RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10040
         (93 letters)



>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo
          sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A*
          1muf_A
          Length = 293

 Score = 52.4 bits (126), Expect = 9e-10
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 3  RYEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQDCK 62
            EG  +     G GV+   DG   +G +  G + G       DG   F   +G ++D  
Sbjct: 7  TLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIF---KGQYKDNI 63

Query: 63 M 63
           
Sbjct: 64 R 64



 Score = 44.7 bits (106), Expect = 5e-07
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 2  TRYEGELLQGWFHGHGVFWRADG-MKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQD 60
             +G  + G  +G    +  DG + F+G+++     G   + Y DG        G   +
Sbjct: 29 GVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGG----SLVGEVNE 84



 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 4   YEGELLQGWFHGHGVFWRADGMKFEGEFR-GGRIWGHGLVTYADGTHGFPKNEGYFQDCK 62
           ++G+      HG    +  DG    GE    G + G  +              G F D +
Sbjct: 55  FKGQYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPD--ERTALYGKFIDGE 112

Query: 63  MMK 65
           M++
Sbjct: 113 MIE 115



 Score = 33.6 bits (77), Expect = 0.004
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 19 FWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQDCKM 63
          F+  DG   EG +    + G G+ TY DG       +G + D ++
Sbjct: 1  FF-FDGSTLEGYYVDDALQGQGVYTYEDGG----VLQGTYVDGEL 40



 Score = 30.5 bits (69), Expect = 0.047
 Identities = 10/74 (13%), Positives = 17/74 (22%), Gaps = 14/74 (18%)

Query: 3   RYEGELLQ-GWFHGHGVFWR------------ADGMKFEGEFRGGRIWGHGLVTYADGTH 49
              GE+ + G   G  + +              DG   EG+         G   + +   
Sbjct: 77  SLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHF-ELMP 135

Query: 50  GFPKNEGYFQDCKM 63
           G             
Sbjct: 136 GNSVYHFDKSTSSC 149



 Score = 29.3 bits (66), Expect = 0.13
 Identities = 4/52 (7%), Positives = 8/52 (15%), Gaps = 3/52 (5%)

Query: 3   RYEGELLQGWFHGHGVF---WRADGMKFEGEFRGGRIWGHGLVTYADGTHGF 51
             EG+L        G            +  +           +         
Sbjct: 113 MIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESER 164



 Score = 25.8 bits (57), Expect = 2.0
 Identities = 6/57 (10%), Positives = 10/57 (17%), Gaps = 1/57 (1%)

Query: 4   YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQD 60
           Y  +                            I   G   ++    G P     F +
Sbjct: 140 YHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVG-PNTVMSFYN 195


>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET:
           ARG HEM; 3.20A {Geobacillus stearothermophilus}
          Length = 375

 Score = 28.3 bits (63), Expect = 0.27
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 35  RIWGHGLVTYA-----DGTHGFPKNEGYFQDCKMM 64
           RIW H L+ YA     +G  G   +  + + C+ +
Sbjct: 130 RIWNHQLIRYAGYETEEGIIGDSSSLTFTRACEQL 164


>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
           {Saccharomyces cerevisiae} SCOP: a.118.1.9
          Length = 480

 Score = 27.8 bits (61), Expect = 0.51
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 5/31 (16%)

Query: 3   RYEGELLQG---W--FHGHGVFWRADGMKFE 28
            Y  EL      W   H    FW  +  +F+
Sbjct: 360 EYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390


>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET:
           HGX; 1.75A {Pimelobacter simplex}
          Length = 293

 Score = 27.4 bits (60), Expect = 0.67
 Identities = 11/36 (30%), Positives = 11/36 (30%)

Query: 13  FHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGT 48
           F   G      G    G   G   W  G VT  DG 
Sbjct: 111 FFVEGSPRIESGGDIAGGAAGEPCWVEGTVTDTDGN 146


>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido;
           HET: PCF; 2.65A {Pseudomonas putida}
          Length = 311

 Score = 24.7 bits (53), Expect = 5.7
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 9   LQGWFHGHGVFWRADGMK-FEGEFRGGRIWGHGLVTYADGT 48
           ++G  +  G       ++  +G   G  ++  G V  A+G 
Sbjct: 105 IEGPLYVAGAPLAQGEVRMDDGTDPGVVMFLQGQVFDANGK 145


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.141    0.472 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,558,464
Number of extensions: 81950
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 16
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.3 bits)