RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10040
         (93 letters)



>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 477

 Score = 26.4 bits (58), Expect = 0.50
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 5/31 (16%)

Query: 3   RYEGELLQG---W--FHGHGVFWRADGMKFE 28
            Y  EL      W   H    FW  +  +F+
Sbjct: 357 EYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 387


>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId:
          219653]}
          Length = 168

 Score = 23.5 bits (50), Expect = 4.9
 Identities = 6/46 (13%), Positives = 10/46 (21%)

Query: 8  LLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPK 53
           +  W+H        +  K         I G G  +          
Sbjct: 11 TIADWYHSLSTVLFPNPNKAPPAPDTTLINGLGRNSANPSAGQLAV 56


>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
          eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
          2287]}
          Length = 91

 Score = 22.3 bits (48), Expect = 9.6
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 66 RKKCLDVVKKAQKVSLMARM 85
          R+K     KK Q++  +  +
Sbjct: 6  RRKKNLQWKKIQRLDKILEL 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.472 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 390,218
Number of extensions: 16293
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 14
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.4 bits)