BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10042
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
+Y+ YK+SI P+ FWG+ K W TP N + + G +SIKW E T N+
Sbjct: 23 QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83 YNLLDRNIRLGLGDKVAFYW 102
N LDR+++ GD+ A W
Sbjct: 79 ANCLDRHLQEN-GDRTAIIW 97
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
+Y+ YK+SI P+ FWG+ K W TP N + + G +SIKW E T N+
Sbjct: 23 QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83 YNLLDRNIRLGLGDKVAFYW 102
N LDR+++ GD+ A W
Sbjct: 79 ANCLDRHLQEN-GDRTAIIW 97
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
+Y+ YK+SI P+ FWG+ K W TP N + + G +SIKW E T N+
Sbjct: 23 QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83 YNLLDRNIRLGLGDKVAFYW 102
N LDR+++ GD+ A W
Sbjct: 79 ANCLDRHLQEN-GDRTAIIW 97
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
+Y+ YK+SI P+ FWG+ K W TP N + + G +SIKW E T N+
Sbjct: 23 QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83 YNLLDRNIRLGLGDKVAFYW 102
N LDR+++ GD+ A W
Sbjct: 79 ANCLDRHLQEN-GDRTAIIW 97
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
+Y+ YK+SI P+ FWG+ K W TP N + + G +SIKW E T N+
Sbjct: 23 QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83 YNLLDRNIRLGLGDKVAFYW 102
N LDR+++ GD+ A W
Sbjct: 79 ANCLDRHLQEN-GDRTAIIW 97
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
+Y+ YK+SI P+ FWG+ K W TP N + + G +SIKW E T N+
Sbjct: 23 QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83 YNLLDRNIRLGLGDKVAFYW 102
N LDR+++ GD+ A W
Sbjct: 79 ANCLDRHLQEN-GDRTAIIW 97
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
+Y+ YK+SI P+ FWG+ K W TP N + + G +SIKW E T N+
Sbjct: 23 QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83 YNLLDRNIRLGLGDKVAFYW 102
N LDR+++ GD+ A W
Sbjct: 79 ANCLDRHLQEN-GDRTAIIW 97
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase
In Complex With Amp
Length = 663
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 21 MAKYQEVYKKSIECPEEFWGQIAKQF-HWETPID---LDRFHSHNFNISNGPISIKWLEG 76
+ YQ ++K+SIE P +F+G A QF +W P D + + + N W
Sbjct: 23 LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNN----AWFLN 78
Query: 77 ATTNICYNLLDRN 89
N CYN +DR+
Sbjct: 79 GQLNACYNCVDRH 91
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 12 LSKKSYISTMAKYQEVYKKSIECPEEFWGQ 41
S + Y++ KYQ +++KS CPE G+
Sbjct: 19 FSNRQYLNHHKKYQHIHQKSFSCPEPACGK 48
>pdb|3AQY|A Chain A, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain
pdb|3AQY|B Chain B, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain
pdb|3AQZ|A Chain A, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain With Laminarihexaoses
pdb|3AQZ|B Chain B, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain With Laminarihexaoses
Length = 106
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 16 SYISTMAKYQEVYKKS--IECPEEFWGQIAKQFHWETPIDLDRFHSHNF--NISNGPISI 71
SY+ AK + +Y K + P++ + A FH + ++D + ++ +I+ P
Sbjct: 2 SYVVPSAKLEAIYPKGLRVSIPDDGFSLFA--FHGKLNEEMDGLEAGHWARDITK-PKEG 58
Query: 72 KWLEGATTNICYNLLDRNIRLGLGDKVAFY 101
+W DRN++L LGDK+ F+
Sbjct: 59 RW----------TFRDRNVKLKLGDKIYFW 78
>pdb|3BJE|A Chain A, Crystal Structure Of Trypanosoma Brucei Nucleoside
Phosphorylase Shows Uridine Phosphorylase Activity
pdb|3BJE|B Chain B, Crystal Structure Of Trypanosoma Brucei Nucleoside
Phosphorylase Shows Uridine Phosphorylase Activity
Length = 349
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 47 HWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICY 83
H P ++ S FN+SNG + +E T+ ICY
Sbjct: 264 HLTVPNMVEELGSLKFNLSNGVEVVTNIEMETSAICY 300
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 11 DLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFH----WE---------------TP 51
D +K Y+ + K Y+ I+ E A FH W+ TP
Sbjct: 252 DYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATIFHAGILWDKETHPWFDLAKVSIKTP 311
Query: 52 IDLDRFHSHNFNISNGPISIKWLEGAT 78
+ D FNI+N P S+ LE +
Sbjct: 312 LSPDVLEKTAFNIANQPASLGLLEAKS 338
>pdb|1U5U|A Chain A, The Structure Of An Allene Oxide Synthase Reveals A Novel
Use For A Catalase Fold
pdb|1U5U|B Chain B, The Structure Of An Allene Oxide Synthase Reveals A Novel
Use For A Catalase Fold
Length = 374
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 11 DLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFH----WE---------------TP 51
D +K Y+ + K Y+ I+ E A FH W+ TP
Sbjct: 252 DYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATIFHAGILWDKETHPWFDLAKVSIKTP 311
Query: 52 IDLDRFHSHNFNISNGPISIKWLEGAT 78
+ D FNI+N P S+ LE +
Sbjct: 312 LSPDVLEKTAFNIANQPASLGLLEAKS 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,262,419
Number of Sequences: 62578
Number of extensions: 126132
Number of successful extensions: 263
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 13
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)