Query psy10042
Match_columns 102
No_of_seqs 112 out of 1070
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 16:22:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02654 acetate-CoA ligase 99.8 2.1E-19 4.5E-24 144.1 9.3 99 4-102 12-110 (666)
2 PTZ00237 acetyl-CoA synthetase 99.7 7.5E-18 1.6E-22 134.8 6.9 75 20-102 6-82 (647)
3 PLN03052 acetate--CoA ligase; 99.7 1.5E-17 3.2E-22 135.2 7.7 94 3-102 84-196 (728)
4 PRK03584 acetoacetyl-CoA synth 99.7 7.5E-17 1.6E-21 128.5 7.2 91 1-102 1-105 (655)
5 TIGR01217 ac_ac_CoA_syn acetoa 99.7 9.6E-17 2.1E-21 128.4 7.2 87 4-102 5-105 (652)
6 PRK10524 prpE propionyl-CoA sy 99.7 7.5E-17 1.6E-21 127.7 6.3 74 21-102 1-74 (629)
7 TIGR02188 Ac_CoA_lig_AcsA acet 99.7 2E-16 4.2E-21 125.3 7.7 75 20-102 3-78 (625)
8 PRK00174 acetyl-CoA synthetase 99.6 2.2E-15 4.8E-20 119.6 8.4 87 6-102 2-88 (637)
9 TIGR02316 propion_prpE propion 99.6 2.6E-15 5.5E-20 119.3 6.3 72 23-102 2-73 (628)
10 KOG1175|consensus 99.3 4.7E-12 1E-16 101.9 5.7 78 20-102 9-86 (626)
11 PRK04319 acetyl-CoA synthetase 94.9 0.019 4.2E-07 45.2 2.5 32 71-102 34-65 (570)
12 PF11333 DUF3135: Protein of u 26.8 54 0.0012 20.0 1.8 21 21-41 3-23 (83)
13 cd05885 Ig2_Necl-4 Second immu 23.5 42 0.00091 20.2 0.9 14 66-79 12-25 (80)
No 1
>PLN02654 acetate-CoA ligase
Probab=99.80 E-value=2.1e-19 Score=144.12 Aligned_cols=99 Identities=45% Similarity=0.928 Sum_probs=80.1
Q ss_pred CCCCCChHHHhhcCCCChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhh
Q psy10042 4 SLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICY 83 (102)
Q Consensus 4 ~~~~P~~~~~~~~~~~~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~ 83 (102)
.++.|+..+...+.+..+.+|++||+||+++++.||.++++++.|.+++.-++|++.+.+++.+++.++||+||+||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~ 91 (666)
T PLN02654 12 DLVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICY 91 (666)
T ss_pred cccCCCHHHHhhccCCCHHHHHHHHHHHhcCHHHHHHHHHHhCCeecCCCcceEeccCCCcccCCccccccCCCEeeHHH
Confidence 45777777777777777789999999999999999999999999998850037775433333445678999999999999
Q ss_pred HHhhhhhhcCCCCceeEEC
Q psy10042 84 NLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 84 N~Ldrh~~~~~~~~~Aii~ 102 (102)
||||||+..++++++||+|
T Consensus 92 ~~l~~~~~~~~~~~~Al~~ 110 (666)
T PLN02654 92 NCLDRNVEAGNGDKIAIYW 110 (666)
T ss_pred HHHHHhhccCCCCCEEEEE
Confidence 9999998655689999985
No 2
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.72 E-value=7.5e-18 Score=134.78 Aligned_cols=75 Identities=29% Similarity=0.600 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHhhh-cccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcC-CCCc
Q psy10042 20 TMAKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLG-LGDK 97 (102)
Q Consensus 20 ~~~~y~~l~~~S~~~~~~FW~~~~~~-l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~-~~~~ 97 (102)
++++|++||+||+++|+.||.++|++ +.|+++| ++|++. +++.++||+||+||+++||||||+..+ ++++
T Consensus 6 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~------~~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~ 77 (647)
T PTZ00237 6 DPFDYENDSNYANSNPESFWDEVAKKYVHWDKMY--DKVYSG------DEIYPDWFKGGELNTCYNVLDIHVKNPLKRDQ 77 (647)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHhcCeeeCCc--ccccCC------CCCchhhCCCCeeeHHHHHHHHhhcccCCCCc
Confidence 47899999999999999999999998 8999999 999852 234489999999999999999997532 5799
Q ss_pred eeEEC
Q psy10042 98 VAFYW 102 (102)
Q Consensus 98 ~Aii~ 102 (102)
+||||
T Consensus 78 ~A~~~ 82 (647)
T PTZ00237 78 DALIY 82 (647)
T ss_pred eEEEE
Confidence 99985
No 3
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.72 E-value=1.5e-17 Score=135.20 Aligned_cols=94 Identities=19% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCCCCCChHHHhhcCC-----------------CChHHHHHHHHHHhhCHHHHHHHHhhh--cccccCCCCCceecccCC
Q psy10042 3 KSLYEPNADLSKKSYI-----------------STMAKYQEVYKKSIECPEEFWGQIAKQ--FHWETPIDLDRFHSHNFN 63 (102)
Q Consensus 3 ~~~~~P~~~~~~~~~~-----------------~~~~~y~~l~~~S~~~~~~FW~~~~~~--l~w~~~~~~~~v~~~~~~ 63 (102)
+++|.|+.+..+.++| ..+++|++||+||+++++.||.+++++ +.|++++ ++|++.+
T Consensus 84 ~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~--~~v~~~~-- 159 (728)
T PLN03052 84 PPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPP--RCILDTS-- 159 (728)
T ss_pred CCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCC--ceeecCC--
Confidence 3789999885554442 135789999999999999999999997 6899998 9998631
Q ss_pred CCCCCCcceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042 64 ISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 64 ~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~ 102 (102)
...++.++||+||+||+|+|||++|+. .+++++||+|
T Consensus 160 -~~~~~~~~wf~g~~ln~~~~~l~~~~~-~~pd~~Ai~~ 196 (728)
T PLN03052 160 -DESNPGGQWLPGAVLNVAECCLTPKPS-KTDDSIAIIW 196 (728)
T ss_pred -CCCCCCCEECCCCEeEHHHHHHHHHhc-cCCCCeEEEE
Confidence 123566899999999999999998764 2579999985
No 4
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.68 E-value=7.5e-17 Score=128.49 Aligned_cols=91 Identities=24% Similarity=0.383 Sum_probs=74.1
Q ss_pred CCCCCCCCChHHHhhcCC------------CChHHHHHHHHHHhhCHHHHHHHHhhh--cccccCCCCCceecccCCCCC
Q psy10042 1 MKKSLYEPNADLSKKSYI------------STMAKYQEVYKKSIECPEEFWGQIAKQ--FHWETPIDLDRFHSHNFNISN 66 (102)
Q Consensus 1 ~~~~~~~P~~~~~~~~~~------------~~~~~y~~l~~~S~~~~~~FW~~~~~~--l~w~~~~~~~~v~~~~~~~~~ 66 (102)
|...+|.|+++..+.++| .++++|+++|+||+++|+.||.++|+. +.|++++ +++++. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~--~~~~~~-----~ 73 (655)
T PRK03584 1 MGDPLWTPSAERIAASRMTAFIRWLAARRGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPY--TVVLAG-----R 73 (655)
T ss_pred CCCCCCCCChhhcccchHHHHHHHHHHHhCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCC--cEeecC-----C
Confidence 677899988775444442 256899999999999999999999987 8999998 999753 1
Q ss_pred CCCcceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042 67 GPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 67 ~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~ 102 (102)
..+.++||+||+||+|+||++ | .+++++||++
T Consensus 74 ~~~~~~wf~~~~~n~~~~~~~-~---~~~~~~Al~~ 105 (655)
T PRK03584 74 RMPGARWFPGARLNYAENLLR-H---RRDDRPAIIF 105 (655)
T ss_pred CCCCCeeCCCCEeeHHHHhhc-c---CCCCCeEEEE
Confidence 245689999999999999997 4 2578999985
No 5
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.67 E-value=9.6e-17 Score=128.42 Aligned_cols=87 Identities=22% Similarity=0.433 Sum_probs=70.8
Q ss_pred CCCCCChHHHhhcCC------------CChHHHHHHHHHHhhCHHHHHHHHhhh--cccccCCCCCceecccCCCCCCCC
Q psy10042 4 SLYEPNADLSKKSYI------------STMAKYQEVYKKSIECPEEFWGQIAKQ--FHWETPIDLDRFHSHNFNISNGPI 69 (102)
Q Consensus 4 ~~~~P~~~~~~~~~~------------~~~~~y~~l~~~S~~~~~~FW~~~~~~--l~w~~~~~~~~v~~~~~~~~~~~~ 69 (102)
.+|.|+.+....++| .++++|+++|+||+++|+.||.++|++ |.|+++| ++|++. ..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~--~~~~~~-----~~~~ 77 (652)
T TIGR01217 5 PLWQPDAQRIAQARMTRFQAWAGEHHGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPC--ARVVDD-----RTMP 77 (652)
T ss_pred CCCCCChhhcccchHHHHHHHHHHhhCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCC--ceeeeC-----CCCC
Confidence 589888765544443 246799999999999999999999997 9999998 999853 1245
Q ss_pred cceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042 70 SIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 70 ~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~ 102 (102)
.++||+||++|+|+|||+ | .++++|++|
T Consensus 78 ~~~wf~~~~~n~~~~~~~-~----~~~~~a~~~ 105 (652)
T TIGR01217 78 GAQWFPGARLNYAENLLR-A----AGTEPALLY 105 (652)
T ss_pred CCEECCCCeeeHHHHHhc-c----CCCCeEEEE
Confidence 689999999999999997 4 257888875
No 6
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.67 E-value=7.5e-17 Score=127.70 Aligned_cols=74 Identities=32% Similarity=0.731 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCceeE
Q psy10042 21 MAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAF 100 (102)
Q Consensus 21 ~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Ai 100 (102)
+.+|+++|+||+++|+.||.++++.|.|++++ ++|++.+ .++.++||+||++|+|+|+|++|+. .+++++||
T Consensus 1 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~--~~~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~A~ 72 (629)
T PRK10524 1 MMSYSEFYQRSIDDPEAFWAEQARRIDWQTPF--TQVLDYS-----NPPFARWFVGGRTNLCHNAVDRHLA-KRPEQLAL 72 (629)
T ss_pred ChhHHHHHHHHhcCHHHHHHHHHHhCCcccCc--hhhccCC-----CCCcCccCCCcEeeHHHHHHHHhhc-cCCCCeEE
Confidence 35799999999999999999999999999998 9998531 2556899999999999999999875 36799999
Q ss_pred EC
Q psy10042 101 YW 102 (102)
Q Consensus 101 i~ 102 (102)
+|
T Consensus 73 ~~ 74 (629)
T PRK10524 73 IA 74 (629)
T ss_pred EE
Confidence 74
No 7
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.66 E-value=2e-16 Score=125.26 Aligned_cols=75 Identities=35% Similarity=0.795 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHhhh-cccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCce
Q psy10042 20 TMAKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKV 98 (102)
Q Consensus 20 ~~~~y~~l~~~S~~~~~~FW~~~~~~-l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~ 98 (102)
++++|++||+||+++|+.||.++++. +.|++++ +++++.+ .++.++||+||+||+|+|||++|+.. +++++
T Consensus 3 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~~-~p~~~ 74 (625)
T TIGR02188 3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPF--TKVLDWS-----FPPFYKWFVGGELNVSYNCVDRHLEA-RPDKV 74 (625)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHhcCceecCC--ceeecCC-----CCCCCeeCCCCEEEHHHHHHHHhhcc-CCCCe
Confidence 47899999999999999999999998 9999998 9998632 24568999999999999999998853 67999
Q ss_pred eEEC
Q psy10042 99 AFYW 102 (102)
Q Consensus 99 Aii~ 102 (102)
|++|
T Consensus 75 Al~~ 78 (625)
T TIGR02188 75 AIIW 78 (625)
T ss_pred EEEE
Confidence 9975
No 8
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.61 E-value=2.2e-15 Score=119.60 Aligned_cols=87 Identities=38% Similarity=0.808 Sum_probs=75.0
Q ss_pred CCCChHHHhhcCCCChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHH
Q psy10042 6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNL 85 (102)
Q Consensus 6 ~~P~~~~~~~~~~~~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~ 85 (102)
++|+....+...| ++.+|.+|+++|+++|+.||.++++.+.|.+++ +++++. +.+..+||+||++|+|+||
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~------~~~~~~w~~~~~~n~~~~~ 72 (637)
T PRK00174 2 FPPPAEFAANALI-DMEQYKALYQESVEDPEGFWAEQAKRLDWFKPF--DTVLDW------NAPFIKWFEDGELNVSYNC 72 (637)
T ss_pred cCCChHHHhhcCC-ChHHHHHHHHHHhcCHHHHHHHHHHhcCeecCC--cccccC------CCCCCccCCCCEeEHHHHH
Confidence 4677777777777 578999999999999999999999999999998 999853 2567899999999999999
Q ss_pred hhhhhhcCCCCceeEEC
Q psy10042 86 LDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 86 Ldrh~~~~~~~~~Aii~ 102 (102)
|++|+.. .++++||+|
T Consensus 73 l~~~~~~-~p~~~Al~~ 88 (637)
T PRK00174 73 LDRHLKT-RGDKVAIIW 88 (637)
T ss_pred HHHhhcc-CCCCeEEEE
Confidence 9998753 579999984
No 9
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.58 E-value=2.6e-15 Score=119.35 Aligned_cols=72 Identities=38% Similarity=0.816 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 23 ~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~ 102 (102)
+|+++|+||+++|+.||.++++.|.|++++ +++++. ..++.++||+||++|+|+|+|++|+.. +++++||++
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~--~~~~~~-----~~~~~~~wf~~~~~n~~~~~l~~~~~~-~p~~~Al~~ 73 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPP--QRILDY-----SNPPFARWFAGGRTNLCHNALDRHLDE-RGEQLALVT 73 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHhCCeecCC--cccccC-----CCCCcCccCCCCEeeHHHHHHHHHhCc-CCCCeEEEE
Confidence 599999999999999999999999999998 999853 125568999999999999999998753 579999974
No 10
>KOG1175|consensus
Probab=99.28 E-value=4.7e-12 Score=101.94 Aligned_cols=78 Identities=44% Similarity=0.846 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCcee
Q psy10042 20 TMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVA 99 (102)
Q Consensus 20 ~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~A 99 (102)
++++|+++|++|+++++.||..+++.+.|..+. .+.. .+.+.+.+.++||+|+.+|+||||++||...+.++++|
T Consensus 9 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a 83 (626)
T KOG1175|consen 9 SLSSYREFYRFSVEDPERFWGEVAKELHWKFPW--PRCN---KDENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVA 83 (626)
T ss_pred CHHHHHHHHhhcccCHHHHHHHhhhhhhcccCc--cccc---cccccCCCCccccccchhhhhHhhhhhhhhhcCCCCcE
Confidence 578999999999999999999999987776553 3111 11234567899999999999999999998765678999
Q ss_pred EEC
Q psy10042 100 FYW 102 (102)
Q Consensus 100 ii~ 102 (102)
++|
T Consensus 84 ~~~ 86 (626)
T KOG1175|consen 84 IIF 86 (626)
T ss_pred EEE
Confidence 886
No 11
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=94.93 E-value=0.019 Score=45.25 Aligned_cols=32 Identities=41% Similarity=0.702 Sum_probs=27.3
Q ss_pred ceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042 71 IKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 71 ~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~ 102 (102)
.+||+++++|+++++|++|+....++++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 65 (570)
T PRK04319 34 FSWLETGKVNIAYEAIDRHADGGRKDKVALRY 65 (570)
T ss_pred hccCCCCceeHHHHHHHHhhccCCCCceEEEE
Confidence 48999999999999999988644578999863
No 12
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=26.75 E-value=54 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhCHHHHHHH
Q psy10042 21 MAKYQEVYKKSIECPEEFWGQ 41 (102)
Q Consensus 21 ~~~y~~l~~~S~~~~~~FW~~ 41 (102)
+.++++|...+.++|++|=.-
T Consensus 3 lp~FD~L~~LA~~dPe~fe~l 23 (83)
T PF11333_consen 3 LPDFDELKELAQNDPEAFEQL 23 (83)
T ss_pred CCCHHHHHHHHHhCHHHHHHH
Confidence 457888888899999998753
No 13
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=23.49 E-value=42 Score=20.18 Aligned_cols=14 Identities=7% Similarity=0.472 Sum_probs=10.4
Q ss_pred CCCCcceecCCCcc
Q psy10042 66 NGPISIKWLEGATT 79 (102)
Q Consensus 66 ~~~~~~~WF~gg~l 79 (102)
+.++.++||.|++-
T Consensus 12 kP~a~i~W~k~~~~ 25 (80)
T cd05885 12 KPAATLRWYRDRKE 25 (80)
T ss_pred cCCCeEEEEECCEE
Confidence 33457899999873
Done!