Query psy10042
Match_columns 102
No_of_seqs 112 out of 1070
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 16:23:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ry2_A Acetyl-coenzyme A synth 99.6 1.8E-15 6.2E-20 120.0 7.0 80 20-102 22-103 (663)
2 1pg4_A Acetyl-COA synthetase; 99.5 1E-14 3.5E-19 115.3 8.3 93 4-102 5-97 (652)
3 3etc_A AMP-binding protein; ad 70.8 2 6.9E-05 33.1 2.1 31 71-102 47-77 (580)
4 3c5e_A Acyl-coenzyme A synthet 38.7 12 0.00041 28.6 1.5 33 70-102 28-64 (570)
5 2k19_A Putative piscicolin 126 36.2 11 0.00039 23.1 0.8 9 70-78 3-11 (98)
6 2zrr_A Mundticin KS immunity p 24.3 18 0.0006 22.9 0.2 11 68-78 21-31 (118)
7 1ym0_B Fibrinotic enzyme compo 24.3 20 0.00067 16.3 0.3 12 71-82 3-14 (27)
8 2v7b_A Benzoate-coenzyme A lig 16.7 78 0.0027 23.5 2.4 28 73-102 17-44 (529)
9 2lu7_A Obscurin-like protein 1 11.4 87 0.003 17.2 1.0 12 68-79 24-35 (84)
10 1m06_J J protein, small core p 10.8 74 0.0025 14.4 0.5 8 71-78 15-22 (26)
No 1
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.58 E-value=1.8e-15 Score=120.04 Aligned_cols=80 Identities=29% Similarity=0.526 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHhhh-cccccCCCCCceecccCCCC-CCCCcceecCCCcchhhhHHhhhhhhcCCCCc
Q psy10042 20 TMAKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNIS-NGPISIKWLEGATTNICYNLLDRNIRLGLGDK 97 (102)
Q Consensus 20 ~~~~y~~l~~~S~~~~~~FW~~~~~~-l~w~~~~~~~~v~~~~~~~~-~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~ 97 (102)
.+++|.+||++|+++|+.||.++|+. |.|++++ ++|++.+.+.. ...+..+||+||++|+++|||++|+.. ++++
T Consensus 22 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~-~pd~ 98 (663)
T 1ry2_A 22 GLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPF--DKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALK-TPNK 98 (663)
T ss_dssp --CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECC--SCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTT-CTTS
T ss_pred ChhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCC--ceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHhcc-CCCc
Confidence 46799999999999999999999998 9999998 99997531100 012337999999999999999999864 6899
Q ss_pred eeEEC
Q psy10042 98 VAFYW 102 (102)
Q Consensus 98 ~Aii~ 102 (102)
+||+|
T Consensus 99 ~Al~~ 103 (663)
T 1ry2_A 99 KAIIF 103 (663)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99985
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.55 E-value=1e-14 Score=115.31 Aligned_cols=93 Identities=34% Similarity=0.700 Sum_probs=76.6
Q ss_pred CCCCCChHHHhhcCCCChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhh
Q psy10042 4 SLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICY 83 (102)
Q Consensus 4 ~~~~P~~~~~~~~~~~~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~ 83 (102)
.+++|+....+.+++. ..+|.+||++|+++|+.||.++++.|.|.+++ +++++.+.. .+.+.++||+||++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~wf~~~~~n~~~ 79 (652)
T 1pg4_A 5 HKHAIPANIADRCLIN-PEQYETKYKQSINDPDTFWGEQGKILDWITPY--QKVKNTSFA--PGNVSIKWYEDGTLNLAA 79 (652)
T ss_dssp CCBCCCHHHHHHCSSC-HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCC--SCCEEEECC--TTCCEEEESTTCEECHHH
T ss_pred cccCCCHHHHhhccCC-hHHHHHHHHHHhcCHHHHHHHHHhhCceecCC--cccccCccc--cCCCCCEECCCCChhHHH
Confidence 4567777777777764 56899999999999999999999989999998 999865310 014578999999999999
Q ss_pred HHhhhhhhcCCCCceeEEC
Q psy10042 84 NLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 84 N~Ldrh~~~~~~~~~Aii~ 102 (102)
|+|++|+.. +++++||+|
T Consensus 80 ~~l~~~a~~-~pd~~Al~~ 97 (652)
T 1pg4_A 80 NCLDRHLQE-NGDRTAIIW 97 (652)
T ss_dssp HHTGGGHHH-HTTSEEEEE
T ss_pred HHHHHHhcc-CCCceEEEE
Confidence 999999864 579999984
No 3
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.79 E-value=2 Score=33.06 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=25.7
Q ss_pred ceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042 71 IKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 71 ~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~ 102 (102)
.+|.....+|+++.+|++++.. .++++|+++
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a~~-~pd~~Al~~ 77 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYARD-SPEKLAMIW 77 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHHHH-CTTCEEEEE
T ss_pred CCCCCcccchHHHHHHHHHHhh-CCCCEEEEE
Confidence 4677778899999999988864 589999974
No 4
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=38.75 E-value=12 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=25.7
Q ss_pred cceecCCCcchhhhHHhhhhhhc----CCCCceeEEC
Q psy10042 70 SIKWLEGATTNICYNLLDRNIRL----GLGDKVAFYW 102 (102)
Q Consensus 70 ~~~WF~gg~lN~a~N~Ldrh~~~----~~~~~~Aii~ 102 (102)
...|+..+.+|++..+|++++.. ..++++|+++
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~ 64 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWW 64 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEE
Confidence 35789999999999999887753 1578999873
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=36.16 E-value=11 Score=23.05 Aligned_cols=9 Identities=33% Similarity=1.099 Sum_probs=7.5
Q ss_pred cceecCCCc
Q psy10042 70 SIKWLEGAT 78 (102)
Q Consensus 70 ~~~WF~gg~ 78 (102)
..+||.||+
T Consensus 3 ~lKWfsGG~ 11 (98)
T 2k19_A 3 KLKWFSGGK 11 (98)
T ss_dssp SCCCCSCCS
T ss_pred CceeccCCH
Confidence 359999997
No 6
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=24.30 E-value=18 Score=22.92 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=1.7
Q ss_pred CCcceecCCCc
Q psy10042 68 PISIKWLEGAT 78 (102)
Q Consensus 68 ~~~~~WF~gg~ 78 (102)
+...+||.||+
T Consensus 21 M~~LKWFsGGk 31 (118)
T 2zrr_A 21 MSNLKWFSGGD 31 (118)
T ss_dssp ---------CC
T ss_pred cccceeccCCH
Confidence 44579999997
No 7
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=24.29 E-value=20 Score=16.33 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=9.4
Q ss_pred ceecCCCcchhh
Q psy10042 71 IKWLEGATTNIC 82 (102)
Q Consensus 71 ~~WF~gg~lN~a 82 (102)
+-|++||+--++
T Consensus 3 pvwypggqcgvs 14 (27)
T 1ym0_B 3 PVWYPGGQCGVS 14 (27)
T ss_dssp CCSCTTSCCSCC
T ss_pred ceeccCCcccce
Confidence 469999987655
No 8
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=16.72 E-value=78 Score=23.48 Aligned_cols=28 Identities=21% Similarity=0.010 Sum_probs=16.2
Q ss_pred ecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042 73 WLEGATTNICYNLLDRNIRLGLGDKVAFYW 102 (102)
Q Consensus 73 WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~ 102 (102)
.++.+.+|....+|++++. .++++|+++
T Consensus 17 ~~~p~~~~~~~~~l~~~~~--~p~~~A~~~ 44 (529)
T 2v7b_A 17 EAPPALFNFAAYLFRLNET--RAGKTAYID 44 (529)
T ss_dssp -----CCCHHHHHHHHTGG--GTTSEEEEC
T ss_pred ecCccceeHHHHHHHhhhc--cCCceEEEe
Confidence 4556677877777766554 578888763
No 9
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=11.40 E-value=87 Score=17.22 Aligned_cols=12 Identities=8% Similarity=0.440 Sum_probs=9.2
Q ss_pred CCcceecCCCcc
Q psy10042 68 PISIKWLEGATT 79 (102)
Q Consensus 68 ~~~~~WF~gg~l 79 (102)
.+..+||.+|+.
T Consensus 24 ~p~v~W~k~g~~ 35 (84)
T 2lu7_A 24 GGPVRWYKDGER 35 (84)
T ss_dssp STTCEEEETTEE
T ss_pred CcEEEEEECCEE
Confidence 456899998864
No 10
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=10.83 E-value=74 Score=14.38 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=6.0
Q ss_pred ceecCCCc
Q psy10042 71 IKWLEGAT 78 (102)
Q Consensus 71 ~~WF~gg~ 78 (102)
--|++||.
T Consensus 15 rlwyvggt 22 (26)
T 1m06_J 15 RLWYVGGS 22 (26)
T ss_dssp CCCCSSSC
T ss_pred EEEEEcce
Confidence 36999885
Done!