RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10042
         (102 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 92.0 bits (228), Expect = 6e-24
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 5   LYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNI 64
            +   A+++ +  I    +Y+  YK+SI  P+ FWG+  K   W TP         N + 
Sbjct: 2   KHAIPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSF 56

Query: 65  SNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           + G +SIKW E  T N+  N LDR+++   GD+ A  W
Sbjct: 57  APGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIW 93


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 73.7 bits (180), Expect = 2e-17
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 24  YQEVYKKSIECPEEFWGQIAKQF-HWETPIDLDRFHSHNFNISNGPI-SIKWLEGATTNI 81
           YQ ++K+SIE P +F+G  A QF +W  P   D+    +         +  W      N 
Sbjct: 3   YQRLHKESIEDPAKFFGSKATQFLNWSKPF--DKVFIPDPKTGRPSFQNNAWFLNGQLNA 60

Query: 82  CYNLLDRNIRLGLGDKVAFYW 102
           CYN +DR+      +K A  +
Sbjct: 61  CYNCVDRHALKT-PNKKAIIF 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.437 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,204
Number of extensions: 17089
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 6
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)