BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10043
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 172/350 (49%), Gaps = 37/350 (10%)
Query: 69 DYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAA 128
+Y + + Y +K K E+ D PE L K +LA + + VV +TGAGISTA+
Sbjct: 4 NYAAGLSPY----ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTAS 59
Query: 129 KIPDYRGTKGIWTLLQQG-KDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLH 187
IPD+RG G+WT+ ++G + A PT THMAL +L R G ++ +VSQN D LH
Sbjct: 60 GIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLH 119
Query: 188 LRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS------- 240
+RSG PR L+E+HGNM VE CA C +Y V D T T R C+
Sbjct: 120 VRSGFPRDKLAELHGNMFVEECAKCK-TQY---VRDTVVGTMGL-KATGRLCTVAKARGL 174
Query: 241 --CGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDR 298
C L DTI+ + + L + A++ + ADL + +G+SL++ R G L
Sbjct: 175 RACRGELRDTILDWEDS---LPDRDLALADEASRNADLSITLGTSLQI-RPSGNLPLAT- 229
Query: 299 PKKERPKLCIVNLQWTPKDDQATLKINGKY-PVLRKYGWLWGLDRPKKERPKLC------ 351
K+ +L IVNLQ T D A L+I+G V+ + GL+ P + P++
Sbjct: 230 -KRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPP 288
Query: 352 ---IVNLQWTPKDDQATLKINGKCDVVFKQ-LMAHLNLDIPAYDKRRDPV 397
+ PK++ T +ING KQ A N PA KR P
Sbjct: 289 LPRPPTPKLEPKEESPT-RINGSIPAGPKQEPCAQHNGSEPASPKRERPT 337
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 28 ELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKK 81
E+ D PE L K +LA + + VV +TGAGISTA+ IPD+R ++ +++
Sbjct: 22 EIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEE 75
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 149/314 (47%), Gaps = 65/314 (20%)
Query: 91 ELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQG-KDI 149
E+ D PE L K +LA + + VV +TGAGISTA+ IPD+RG G+WT+ ++G
Sbjct: 22 EIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPK 81
Query: 150 GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVC 209
+ A PT THMAL +L R G ++ +VSQN D LH+RSG PR L+E+HGNM VE C
Sbjct: 82 FDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEEC 141
Query: 210 AHCDPVKYYWRVFDVTEHTARYAHQTARKCS---------CGEPLLDTIIHFGEKGVLLW 260
A C +Y V D T T R C+ C L DTI+ + + L
Sbjct: 142 AKCK-TQY---VRDTVVGTMGL-KATGRLCTVAKARGLRACRGELRDTILDWEDS---LP 193
Query: 261 PLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQA 320
+ A++ + ADL + +G+SL++ R G L K+ +L IVNLQ T D A
Sbjct: 194 DRDLALADEASRNADLSITLGTSLQI-RPSGNLPLAT--KRRGGRLVIVNLQPTKHDRHA 250
Query: 321 TLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLM 380
L+I +G D V +LM
Sbjct: 251 DLRI--------------------------------------------HGYVDEVMTRLM 266
Query: 381 AHLNLDIPAYDKRR 394
HL L+IPA+D R
Sbjct: 267 KHLGLEIPAWDGPR 280
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 28 ELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKK 81
E+ D PE L K +LA + + VV +TGAGISTA+ IPD+R ++ +++
Sbjct: 22 EIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEE 75
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 110/253 (43%), Gaps = 54/253 (21%)
Query: 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGK-DI----------- 149
K K+ + + ++ V TGAGIST + IPD+RG GI+ Q DI
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 150 -----GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
G + A+P L H+ L KL G ++ V++QN D LH R+G + + E+HGN+
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVI--ELHGNV 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLN 263
C C+ + + V + + C C + I+ FGE L
Sbjct: 120 EEYYCVRCE------KKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGEN------LP 167
Query: 264 WDGANKN---ADRADLILCVGSSLKVLRKYGWLWGLDRPKKERP--------KLCIVNLQ 312
D + + RA L++ +GSSL V P E P KL IVNL
Sbjct: 168 QDALREAIGLSSRASLMIVLGSSLVVY-----------PAAELPLITVRSGGKLVIVNLG 216
Query: 313 WTPKDDQATLKIN 325
TP DD ATLK N
Sbjct: 217 ETPFDDIATLKYN 229
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 110/253 (43%), Gaps = 54/253 (21%)
Query: 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGK-DI----------- 149
K K+ + + ++ V TGAGIST + IPD+RG GI+ Q DI
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 150 -----GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
G + A+P L H+ L KL G ++ V++QN D LH R+G + + E++GN+
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVI--ELYGNV 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLN 263
C C+ + + V + + C C + I+ FGE L
Sbjct: 120 EEYYCVRCE------KKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGEN------LP 167
Query: 264 WDGANKN---ADRADLILCVGSSLKVLRKYGWLWGLDRPKKERP--------KLCIVNLQ 312
D + + RA L++ +GSSL V P E P KL IVNL
Sbjct: 168 QDALREAIGLSSRASLMIVLGSSLVVY-----------PAAELPLITVRSGGKLVIVNLG 216
Query: 313 WTPKDDQATLKIN 325
TP DD ATLK N
Sbjct: 217 ETPFDDIATLKYN 229
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 109/253 (43%), Gaps = 54/253 (21%)
Query: 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGK-DI----------- 149
K K+ + + ++ V TGAGIST + IPD+RG GI+ Q DI
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 150 -----GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
G + A+P L H+ L KL G ++ V++QN D LH R+G + + E+ GN+
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVI--ELAGNV 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLN 263
C C+ + + V + + C C + I+ FGE L
Sbjct: 120 EEYYCVRCE------KKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGEN------LP 167
Query: 264 WDGANKN---ADRADLILCVGSSLKVLRKYGWLWGLDRPKKERP--------KLCIVNLQ 312
D + + RA L++ +GSSL V P E P KL IVNL
Sbjct: 168 QDALREAIGLSSRASLMIVLGSSLVVY-----------PAAELPLITVRSGGKLVIVNLG 216
Query: 313 WTPKDDQATLKIN 325
TP DD ATLK N
Sbjct: 217 ETPFDDIATLKYN 229
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 107/243 (44%), Gaps = 33/243 (13%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLL--QQGKDIGNH--------- 152
++ AE + +KH VV+TGAGIS + IP +RG G+W ++ I
Sbjct: 6 RKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWE 65
Query: 153 ------DLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSV 206
D AEP H A+ +L R G VK V++QN D LH R+G R VL E+HG+M
Sbjct: 66 FSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG-SRRVL-ELHGSMDK 123
Query: 207 EVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDT-IIHFGEKGVLLWPLNW 264
C C +D +E + +C CG + ++ FGE L
Sbjct: 124 LDCLDCH------ETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEP---LPQRTL 174
Query: 265 DGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKI 324
A + A D + VGSSL V + KK K+ IVN + T D +KI
Sbjct: 175 FEAIEEAKHCDAFMVVGSSLVVYPAAELPY---IAKKAGAKMIIVNAEPTMADPIFDVKI 231
Query: 325 NGK 327
GK
Sbjct: 232 IGK 234
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 33/202 (16%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN------------ 151
++L + I +K++V TGAG+S + IP +RG G+W + +++ N
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRP-EELANPQAFAKDPEKVW 61
Query: 152 -------HDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ A+P H A +L R G +K +++QN DDLH R+G R+V+ +HG++
Sbjct: 62 KWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSL 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
V C C+ F+V +A + CG L ++ FGE +L P
Sbjct: 120 RVVRCTSCN------NSFEV--ESAPKIPPLPKCDKCGSLLRPGVVWFGE---MLPPDVL 168
Query: 265 DGANKNADRADLILCVGSSLKV 286
D A + +RAD+I+ G+S V
Sbjct: 169 DRAMREVERADVIIVAGTSAVV 190
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 29/203 (14%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTK-GIWT-------------------LL 143
++LA+ I+ KHVV TG+G S + IP +RG+ IW+ +
Sbjct: 36 EELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIW 95
Query: 144 QQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGN 203
+ +DI + D + E H+AL L G++K VV+QN D LH SG + + +HGN
Sbjct: 96 EVIRDISS-DYEI-EINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI--SLHGN 151
Query: 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLN 263
+ VC C+ + ++ + + T+ + HQ +C CG II FGE V+ L
Sbjct: 152 VFEAVCCTCNKIVKLNKI--MLQKTSHFMHQLPPECPCGGIFKPNIILFGE--VVSSDL- 206
Query: 264 WDGANKNADRADLILCVGSSLKV 286
A + + DL+L +G+S V
Sbjct: 207 LKEAEEEIAKCDLLLVIGTSSTV 229
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSN 73
++LA+ I+ KHVV TG+G S + IP +R +
Sbjct: 36 EELAKIIKKCKHVVALTGSGTSAESNIPSFRGS 68
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 33/202 (16%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN------------ 151
++L + I +K++V TGAG+S + IP +RG G+W + +++ N
Sbjct: 14 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRP-EELANPQAFAKDPEKVW 72
Query: 152 -------HDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ A+P H A +L R G +K +++QN DDLH R+G R+V+ +HG++
Sbjct: 73 KWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSL 130
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
V C C+ F+V +A + CG L ++ FGE +L P
Sbjct: 131 RVVRCTSCN------NSFEV--ESAPKIPPLPKCDKCGSLLRPGVVWFGE---MLPPDVL 179
Query: 265 DGANKNADRADLILCVGSSLKV 286
D A + +RAD+I+ G+S V
Sbjct: 180 DRAMREVERADVIIVAGTSAVV 201
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 29/203 (14%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTK-GIWT-------------------LL 143
++LA+ I+ KHVV TG+G S + IP +RG+ IW+ +
Sbjct: 11 EELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIW 70
Query: 144 QQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGN 203
+ +DI + D + E H+AL L G++K VV+QN D LH SG + + +HGN
Sbjct: 71 EVIRDISS-DYEI-EINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI--SLHGN 126
Query: 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLN 263
+ VC C+ + ++ + T+ + HQ +C CG II FGE V+ L
Sbjct: 127 VFEAVCCTCNKIVKLNKI--XLQKTSHFXHQLPPECPCGGIFKPNIILFGE--VVSSDL- 181
Query: 264 WDGANKNADRADLILCVGSSLKV 286
A + + DL+L +G+S V
Sbjct: 182 LKEAEEEIAKCDLLLVIGTSSTV 204
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSN 73
++LA+ I+ KHVV TG+G S + IP +R +
Sbjct: 11 EELAKIIKKCKHVVALTGSGTSAESNIPSFRGS 43
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 33/202 (16%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN------------ 151
++L + I +K++V TGAG++ + IP +RG G+W + +++ N
Sbjct: 3 EKLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRP-EELANPQAFAKDPEKVW 61
Query: 152 -------HDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ A+P H A +L R G +K +++QN DDLH R+G R+V+ +HG++
Sbjct: 62 KWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSL 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
V C C+ F+V +A + CG L ++ FGE +L P
Sbjct: 120 RVVRCTSCN------NSFEV--ESAPKIPPLPKCDKCGSLLRPGVVWFGE---MLPPDVL 168
Query: 265 DGANKNADRADLILCVGSSLKV 286
D A + +RAD+I+ G+S V
Sbjct: 169 DRAMREVERADVIIVAGTSAVV 190
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 33/202 (16%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN------------ 151
++L + I +K++V TGAG+S + IP +RG G+W + +++ N
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRP-EELANPQAFAKDPEKVW 61
Query: 152 -------HDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ A+P + A +L R G +K +++QN DDLH R+G R+V+ +HG++
Sbjct: 62 KWYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSL 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
V C C+ F+V +A + CG L ++ FGE +L P
Sbjct: 120 RVVRCTSCN------NSFEV--ESAPKIPPLPKCDKCGSLLRPGVVWFGE---MLPPDVL 168
Query: 265 DGANKNADRADLILCVGSSLKV 286
D A + +RAD+I+ G+S V
Sbjct: 169 DRAMREVERADVIIVAGTSAVV 190
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 33/202 (16%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN------------ 151
++L + I +K++V TGAG+S + IP +RG G+W + +++ N
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRP-EELANPQAFAKDPEKVW 61
Query: 152 -------HDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ A+P H A +L R G +K +++QN DDLH R+G R+V+ +HG++
Sbjct: 62 KWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSL 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
V C C+ F+V +A + CG L ++ GE +L P
Sbjct: 120 RVVRCTSCN------NSFEV--ESAPKIPPLPKCDKCGSLLRPGVVWAGE---MLPPDVL 168
Query: 265 DGANKNADRADLILCVGSSLKV 286
D A + +RAD+I+ G+S V
Sbjct: 169 DRAMREVERADVIIVAGTSAVV 190
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 33/202 (16%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN------------ 151
++L + I +K++V TGAG+S + IP +RG G+W + +++ N
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRP-EELANPQAFAKDPEKVW 61
Query: 152 -------HDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ A+P H A +L R G +K +++QN D LH R+G R+V+ +HG++
Sbjct: 62 KWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAG-SRNVI-HLHGSL 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
V C C+ F+V +A + CG L ++ GE +L P
Sbjct: 120 RVVRCTSCN------NSFEV--ESAPKIPPLPKCDKCGSLLRPGVVWAGE---MLPPDVL 168
Query: 265 DGANKNADRADLILCVGSSLKV 286
D A + +RAD+I+ G+S V
Sbjct: 169 DAAMREVERADVIIVAGTSAVV 190
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 55/226 (24%)
Query: 91 ELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGKDI 149
L+D E++ A+ Q VVV GAGIST + IPD+R G+++ LQQ
Sbjct: 10 SLQDVAELIRARACQ---------RVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQ---- 56
Query: 150 GNHDLSLAE----------------------------PTLTHMALYKLYRHGFVKHVVSQ 181
+DL E P +TH L L+ G + + +Q
Sbjct: 57 --YDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQ 114
Query: 182 NCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS- 240
N D L SG+P S L E HG + C C R F + A +C
Sbjct: 115 NIDGLERVSGIPASKLVEAHGTFASATCTVCQ------RPFPGEDIRADVMADRVPRCPV 168
Query: 241 CGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKV 286
C + I+ FGE P + + ADL+L +G+SL+V
Sbjct: 169 CTGVVKPDIVFFGEP----LPQRFLLHVVDFPMADLLLILGTSLEV 210
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 55/226 (24%)
Query: 91 ELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGKDI 149
L+D E++ A+ Q VVV GAGIST + IPD+R G+++ LQQ
Sbjct: 9 SLQDVAELIRARACQ---------RVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQ---- 55
Query: 150 GNHDLSLAE----------------------------PTLTHMALYKLYRHGFVKHVVSQ 181
+DL E P +TH L L+ G + + +Q
Sbjct: 56 --YDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQ 113
Query: 182 NCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS- 240
N D L SG+P S L E HG + C C R F + A +C
Sbjct: 114 NIDGLERVSGIPASKLVEAHGTFASATCTVCQ------RPFPGEDIRADVMADRVPRCPV 167
Query: 241 CGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKV 286
C + I+ FGE P + + ADL+L +G+SL+V
Sbjct: 168 CTGVVKPDIVFFGEP----LPQRFLLHVVDFPMADLLLILGTSLEV 209
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 55/225 (24%)
Query: 92 LEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGKDIG 150
L+D E++ A+ Q VVV GAGIST + IPD+R G+++ LQQ
Sbjct: 4 LQDVAELIRARACQ---------RVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQ----- 49
Query: 151 NHDLSLAE----------------------------PTLTHMALYKLYRHGFVKHVVSQN 182
+DL E P +TH L L+ G + + +QN
Sbjct: 50 -YDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQN 108
Query: 183 CDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-C 241
D L SG+P S L E HG + C C R F + A +C C
Sbjct: 109 IDGLERVSGIPASKLVEAHGTFASATCTVCQ------RPFPGEDIRADVMADRVPRCPVC 162
Query: 242 GEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKV 286
+ I+ FGE P + + ADL+L +G+SL+V
Sbjct: 163 TGVVKPDIVFFGEP----LPQRFLLHVVDFPMADLLLILGTSLEV 203
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 22/130 (16%)
Query: 105 QLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQ-----GKDIGNHDLSLAEP 159
+ + A+ ++V TGAG+ST+ IPD+R ++G ++ ++ +D+ N+++ + +P
Sbjct: 176 HFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDP 235
Query: 160 T----LTHMAL--YKLYR--HGFVKHV---------VSQNCDDLHLRSGLPRSVLSEVHG 202
+ + +M L K+Y H F+K + +QN D+L +G+ L + HG
Sbjct: 236 SVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHG 295
Query: 203 NMSVEVCAHC 212
+ + C C
Sbjct: 296 SFATATCVTC 305
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 3 LDSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGIS 62
L ++ ++K+ + INKV L + + + + A+ ++V TGAG+S
Sbjct: 142 LAKKQTVRLIKDLQRAINKVLCTRLRLSNFFTI-----DHFIQKLHTARKILVLTGAGVS 196
Query: 63 TAAKIPDYRSNFTIY 77
T+ IPD+RS+ Y
Sbjct: 197 TSLGIPDFRSSEGFY 211
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 110 IQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLL----------QQGKDIGNHD------ 153
+Q K ++V TGAG+S + IPD+R GI+ L Q DI
Sbjct: 13 LQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPRPF 72
Query: 154 LSLA--------EPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMS 205
A +P+L H + + G + +QN D L +G+ R + + HG+ +
Sbjct: 73 FKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRII--QCHGSFA 130
Query: 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLL---DTIIHFGEKGVLLWPL 262
C C KY V +C EPL I+ FGE P
Sbjct: 131 TASCLIC---KYKVDCEAVRGDIFNQVVPRCPRCPADEPLAIMKPEIVFFGEN----LPE 183
Query: 263 NWDGANK-NADRADLILCVGSSLKV 286
+ A K + D DL++ +GSSLKV
Sbjct: 184 QFHRAMKYDKDEVDLLIVIGSSLKV 208
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 105 QLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQ-----GKDIGNHDLSLAEP 159
+ + A+ ++V TGAG+ST+ IPD+R ++G ++ ++ +D+ N+++ +P
Sbjct: 38 HFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFXHDP 97
Query: 160 TLTH------MALYKLYR--HGFVKHV---------VSQNCDDLHLRSGLPRSVLSEVHG 202
++ + + K+Y H F+K + +QN D+L +G+ L + HG
Sbjct: 98 SVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQCHG 157
Query: 203 NMSVEVCAHC 212
+ + C C
Sbjct: 158 SFATATCVTC 167
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 3 LDSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGIS 62
L ++ ++K+ + INKV L + + + + A+ ++V TGAG+S
Sbjct: 4 LAKKQTVRLIKDLQRAINKVLCTRLRLSNFFTI-----DHFIQKLHTARKILVLTGAGVS 58
Query: 63 TAAKIPDYRSNFTIY 77
T+ IPD+RS+ Y
Sbjct: 59 TSLGIPDFRSSEGFY 73
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 43/211 (20%)
Query: 113 AKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN-----HDLSLA---------- 157
AKH+V+ +GAG+S + +P +RG G W Q +D+ H+ S
Sbjct: 23 AKHIVIISGAGVSAESGVPTFRGAGGYWRKW-QAQDLATPLAFAHNPSRVWEFYHYRREV 81
Query: 158 ----EPTLTHMAL----YKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVC 209
EP H A+ +L + G V++QN D+LH ++G L E+HG++ C
Sbjct: 82 MGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLEIHGSLFKTRC 139
Query: 210 AHCDPVKYYWRVFDVTEHTARYAHQTARK--------------CSCGEPLLDTIIHFGEK 255
C V ++ + + A + + CG L ++ FGE
Sbjct: 140 TSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGEN 199
Query: 256 GVLLWPLNWDGANKNADRADLILCVGSSLKV 286
L P + ++ DL L VG+S V
Sbjct: 200 ---LDPAILEEVDRELAHCDLCLVVGTSSVV 227
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 43/211 (20%)
Query: 113 AKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN-----HDLSLA---------- 157
AKH+V+ +GAG+S + +P +RG G W Q +D+ H+ S
Sbjct: 19 AKHIVIISGAGVSAESGVPTFRGAGGYWRKW-QAQDLATPLAFAHNPSRVWEFYHYRREV 77
Query: 158 ----EPTLTHMAL----YKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVC 209
EP H A+ +L + G V++QN D+LH ++G L E+HG++ C
Sbjct: 78 XGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLEIHGSLFKTRC 135
Query: 210 AHCDPVKYYWRVFDVTEHTARYAHQTARK--------------CSCGEPLLDTIIHFGEK 255
C V ++ + + A + + CG L ++ FGE
Sbjct: 136 TSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGEN 195
Query: 256 GVLLWPLNWDGANKNADRADLILCVGSSLKV 286
L P + ++ DL L VG+S V
Sbjct: 196 ---LDPAILEEVDRELAHCDLCLVVGTSSVV 223
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 43/211 (20%)
Query: 113 AKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN-----HDLSLA---------- 157
AKH+V+ +GAG+S + +P +RG G W Q +D+ H+ S
Sbjct: 15 AKHIVIISGAGVSAESGVPTFRGAGGYWRKW-QAQDLATPLAFAHNPSRVWEFYHYRREV 73
Query: 158 ----EPTLTHMAL----YKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVC 209
EP H A+ +L + G V++QN D+LH ++G L E+HG++ C
Sbjct: 74 MGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLEIHGSLFKTRC 131
Query: 210 AHCDPVKYYWRVFDVTEHTARYAHQTARK--------------CSCGEPLLDTIIHFGEK 255
C V ++ + + A + + CG L ++ FGE
Sbjct: 132 TSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGEN 191
Query: 256 GVLLWPLNWDGANKNADRADLILCVGSSLKV 286
L P + ++ DL L VG+S V
Sbjct: 192 ---LDPAILEEVDRELAHCDLCLVVGTSSVV 219
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 43/211 (20%)
Query: 113 AKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN-----HDLSLA---------- 157
AKH+V+ +GAG+S + +P +RG G W Q +D+ H+ S
Sbjct: 19 AKHIVIISGAGVSAESGVPTFRGAGGYWRKW-QAQDLATPLAFAHNPSRVWEFYHYRREV 77
Query: 158 ----EPTLTHMAL----YKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVC 209
EP H A+ +L + G V++QN D+LH ++G L E+HG++ C
Sbjct: 78 MGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLEIHGSLFKTRC 135
Query: 210 AHCDPVKYYWRVFDVTEHTARYAHQTARK--------------CSCGEPLLDTIIHFGEK 255
C V ++ + + A + + CG L ++ FGE
Sbjct: 136 TSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGEN 195
Query: 256 GVLLWPLNWDGANKNADRADLILCVGSSLKV 286
L P + ++ DL L VG+S V
Sbjct: 196 ---LDPAILEEVDRELAHCDLCLVVGTSSVV 223
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 43/211 (20%)
Query: 113 AKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGN-----HDLSLA---------- 157
AKH+V+ +GAG+S + +P +RG G W Q +D+ H+ S
Sbjct: 21 AKHIVIISGAGVSAESGVPTFRGAGGYWRKW-QAQDLATPLAFAHNPSRVWEFYHYRREV 79
Query: 158 ----EPTLTHMAL----YKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVC 209
EP H A+ +L + G V++QN D+LH ++G L E+HG++ C
Sbjct: 80 MGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLEIHGSLFKTRC 137
Query: 210 AHCDPVKYYWRVFDVTEHTARYAHQTARK--------------CSCGEPLLDTIIHFGEK 255
C V ++ + + A + + CG L ++ FGE
Sbjct: 138 TSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGEN 197
Query: 256 GVLLWPLNWDGANKNADRADLILCVGSSLKV 286
L P + ++ DL L VG+S V
Sbjct: 198 ---LDPAILEEVDRELAHCDLCLVVGTSSVV 225
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 112 NAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGK-----DIGNHDLSLAEPTLTHMA 165
NAK V+ GAGIST+ IPD+R G++ L + K + + D ++P +
Sbjct: 20 NAK-VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL 78
Query: 166 LYKLYRHGF-----------------VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEV 208
+LY F +K V +QN D L ++G+ ++ E HG+ +
Sbjct: 79 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCH 138
Query: 209 CAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE 254
C C V Y +VF A + + KC CGE + I+ FGE
Sbjct: 139 CIGCGKV-YPPQVF--KSKLAEHPIKDFVKCDVCGELVKPAIVFFGE 182
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 30/168 (17%)
Query: 112 NAKHVVVYTGAGISTAAKIPDYR--GTKGIWTLLQQGK-----DIGNHDLSLAEPTLTHM 164
NAK V+ GAGIST+ IPD+R GT G++ L + K + + D ++P +
Sbjct: 28 NAK-VIFMVGAGISTSCGIPDFRSPGT-GLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 85
Query: 165 ALYKLYRHGF-----------------VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVE 207
+LY F +K V +QN D L ++G+ ++ E HG+ +
Sbjct: 86 LAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 145
Query: 208 VCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE 254
C C V Y +VF A + + KC CGE + I+ FGE
Sbjct: 146 HCIGCGKV-YPPQVF--KSKLAEHPIKDFVKCDVCGELVKPAIVFFGE 190
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 112 NAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGK-----DIGNHDLSLAEPTLTHMA 165
NAK V+ GAGIST+ IPD+R G++ L + K + + D ++P +
Sbjct: 27 NAK-VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL 85
Query: 166 LYKLYRHGF-----------------VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEV 208
+LY F +K V +QN D L ++G+ ++ E HG+ +
Sbjct: 86 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCH 145
Query: 209 CAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE 254
C C V Y +VF A + + KC CGE + I+ FGE
Sbjct: 146 CIGCGKV-YPPQVFK--SKLAEHPIKDFVKCDVCGELVKPAIVFFGE 189
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 112 NAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGK-----DIGNHDLSLAEPTLTHMA 165
NAK V+ GAGIST+ IPD+R G++ L + K + + D ++P +
Sbjct: 38 NAK-VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL 96
Query: 166 LYKLYRHGF-----------------VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEV 208
+LY F +K V +QN D L ++G+ ++ E HG+ +
Sbjct: 97 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCH 156
Query: 209 CAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE 254
C C V Y +VF A + + KC CGE + I+ FGE
Sbjct: 157 CIGCGKV-YPPQVFK--SKLAEHPIKDFVKCDVCGELVKPAIVFFGE 200
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 31/200 (15%)
Query: 111 QNAKHVVVYTGAGISTAAKIPDYRG-TKGIWTLLQQ--------------GKDIGNHDLS 155
+ + V+ GAGIST+A IPD+R + G++ L++ K +
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 156 LAE--------PTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVE 207
LA+ PT+ H + L G + +QN D L +GL + L E HG
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 208 VCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGEKGVLLWPLNWDG 266
C Y ++ + + KC C + I+ FGE L +
Sbjct: 161 HCVSASCRHEY----PLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGES---LPARFFSC 213
Query: 267 ANKNADRADLILCVGSSLKV 286
+ + DL+L +G+SL+V
Sbjct: 214 MQSDFLKVDLLLVMGTSLQV 233
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 9 IGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQN--AKHVVVYTGAGISTAAK 66
+ L+ + + S+ E L DE + + +A +Q+ + V+ GAGIST+A
Sbjct: 5 MDFLRNLFSQTLSLGSQKERLLDELTL-----EGVARYMQSERCRRVICLVGAGISTSAG 59
Query: 67 IPDYRSNFT 75
IPD+RS T
Sbjct: 60 IPDFRSPST 68
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 31/200 (15%)
Query: 111 QNAKHVVVYTGAGISTAAKIPDYRG-TKGIWTLLQQ--------------GKDIGNHDLS 155
+ + V+ GAGIST+A IPD+R + G++ L++ K +
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 156 LAE--------PTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVE 207
LA+ PT+ H + L G + +QN D L +GL + L E HG
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 208 VCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGEKGVLLWPLNWDG 266
C Y ++ + + KC C + I+ FGE L +
Sbjct: 161 HCVSASCRHEY----PLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGES---LPARFFSC 213
Query: 267 ANKNADRADLILCVGSSLKV 286
+ + DL+L +G+SL+V
Sbjct: 214 MQSDFLKVDLLLVMGTSLQV 233
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 9 IGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQN--AKHVVVYTGAGISTAAK 66
+ L+ + + S+ E L DE + + +A +Q+ + V+ GAGIST+A
Sbjct: 5 MDFLRNLFSQTLSLGSQKERLLDELTL-----EGVARYMQSERCRRVICLVGAGISTSAG 59
Query: 67 IPDYRSNFT 75
IPD+RS T
Sbjct: 60 IPDFRSPST 68
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 112 NAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGK-----DIGNHDLSLAEPTLTHMA 165
NAK V+ GAGIST+ IPD+R G++ L + K + + D ++P +
Sbjct: 38 NAK-VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL 96
Query: 166 LYKLYRHGF-----------------VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEV 208
+LY F +K V +QN D L ++G+ ++ E HG+ +
Sbjct: 97 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCH 156
Query: 209 CAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE 254
C C V Y +VF A + + KC CGE + I+ FGE
Sbjct: 157 CIGCGKV-YPPQVFK--SKLAEHPIKDFVKCDVCGELVKPAIVFFGE 200
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 112 NAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGK-----DIGNHDLSLAEPTLTHMA 165
NAK V+ GAGIST+ IPD+R G++ L + K + + D ++P +
Sbjct: 30 NAK-VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL 88
Query: 166 LYKLYRHGF-----------------VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEV 208
+LY F +K V +QN D L ++G+ ++ E HG+ +
Sbjct: 89 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCH 148
Query: 209 CAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE 254
C C V Y +VF A + + KC CGE + I+ FGE
Sbjct: 149 CIGCGKV-YPPQVF--KSKLAEHPIKDFVKCDVCGELVKPAIVFFGE 192
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 42/202 (20%)
Query: 116 VVVYTGAGISTAAKIPDYRGTKGIW------------------TLLQQGKDIGNHDLSLA 157
V+V TGAGIS + I +R G+W L+Q + L
Sbjct: 4 VLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP 63
Query: 158 E--PTLTHMALYKLYRH-GFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDP 214
E P H+AL KL G +V+QN D+LH R+G + + +HG + C+
Sbjct: 64 EIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG--NTNVIHMHGELLKVRCSQSGQ 121
Query: 215 VKYYWRVFDVTEHTARYAHQTARKCSCGE---PLLDTIIHFGEKGVLLWPLNWDGANKNA 271
V + DVT KC C + PL ++ FGE PL D
Sbjct: 122 VLDW--TGDVTPED---------KCHCCQFPAPLRPHVVWFGE-----MPLGMDEIYMAL 165
Query: 272 DRADLILCVGSSLKVLRKYGWL 293
AD+ + +G+S V G++
Sbjct: 166 SMADIFIAIGTSGHVYPAAGFV 187
>pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 546
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 130 IPDYRGTKGIWTLLQQGKDIG-NHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHL 188
+PD R K I L+ + + NH L+ P MAL+ L+ ++ + + H
Sbjct: 358 LPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLF------ALMDEADEYKHT 411
Query: 189 RSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTAR-----YAHQTARKCSCGE 243
L R + ++ + + + V YY + D+ + TA+ ++ ++ S G+
Sbjct: 412 LKQLIRRRETTLYRELGMPPLRDENAVDYY-TLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470
Query: 244 PLLDTIIHFGEKGVLLWPLNWDGANKNADRADL 276
L E G++L P G+N+ + RA L
Sbjct: 471 MLFRIA---DETGIVLLPGRGFGSNRPSGRASL 500
>pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|B Chain B, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|C Chain C, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|D Chain D, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|E Chain E, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|F Chain F, R487a Mutant Of L-Aspartate Beta-Decarboxylase
Length = 546
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 130 IPDYRGTKGIWTLLQQGKDIG-NHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHL 188
+PD R K I L+ + + NH L+ P MAL+ L+ ++ + + H
Sbjct: 358 LPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLF------ALMDEADEYKHT 411
Query: 189 RSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTAR-----YAHQTARKCSCGE 243
L R + ++ + + + V YY + D+ + TA+ ++ ++ S G+
Sbjct: 412 LKQLIRRRETTLYRELGMPPLRDENAVDYY-TLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470
Query: 244 PLLDTIIHFGEKGVLLWPLNWDGANKNADRADL 276
L E G++L P G+N+ + RA L
Sbjct: 471 MLFRIA---DETGIVLLPGAGFGSNRPSGRASL 500
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 344 KKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNLDIPAYDKRRDPVFYHSSH 403
+++ KL N++W DD+ T+K+ + + ++ + H+ LD+P ++ V H++
Sbjct: 127 REDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPER----VVEHAAK 182
Query: 404 LIQPEYHTVRKPMLDLPDEEYFSKYEDCEN----LLESFREMENY 444
++P +F Y C N L E RE ++Y
Sbjct: 183 ALKP--------------GGFFVAYTPCSNQVMRLHEKLREFKDY 213
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 344 KKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNLDIPAYDKRRDPVFYHSSH 403
+++ KL N++W DD+ T+K+ + + ++ + H+ LD+P ++ V H++
Sbjct: 127 REDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPER----VVEHAAK 182
Query: 404 LIQPEYHTVRKPMLDLPDEEYFSKYEDCEN----LLESFREMENY 444
++P +F Y C N L E RE ++Y
Sbjct: 183 ALKP--------------GGFFVAYTPCSNQVMRLHEKLREFKDY 213
>pdb|2HV2|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|C Chain C, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|D Chain D, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|E Chain E, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|F Chain F, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
Length = 400
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 107 AEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMA- 165
A Q H V Y AGI A P+YRG GI + ++ DL+ + L+++A
Sbjct: 64 ATPFQVNFHGVRYPXAGIGYVASYPEYRGEGGISAIXKEXL----ADLAKQKVALSYLAP 119
Query: 166 -LYKLYRH 172
Y YR
Sbjct: 120 FSYPFYRQ 127
>pdb|1S5N|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
Length = 386
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 131 PDYRGTKGIWTLLQQGKD-IGNHDLSLAEPTLTHMALYKLYRHGFVKH 177
P+ R T G+WT+ QG+D G+ +P T L +L HG H
Sbjct: 6 PEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFH 53
>pdb|1S5M|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
pdb|1MUW|A Chain A, The 0.86 Angstrom Structure Of Xylose Isomerase
Length = 386
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 131 PDYRGTKGIWTLLQQGKD-IGNHDLSLAEPTLTHMALYKLYRHGFVKH 177
P+ R T G+WT+ QG+D G+ +P T L +L HG H
Sbjct: 6 PEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFH 53
>pdb|1XYA|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYA|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|2GYI|A Chain A, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
pdb|2GYI|B Chain B, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
Length = 386
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 131 PDYRGTKGIWTLLQQGKD-IGNHDLSLAEPTLTHMALYKLYRHGFVKH 177
P+ R T G+WT+ QG+D G+ +P T L +L HG H
Sbjct: 6 PEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFH 53
>pdb|1XYL|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYL|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
Length = 386
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 131 PDYRGTKGIWTLLQQGKD-IGNHDLSLAEPTLTHMALYKLYRHGFVKH 177
P+ R T G+WT+ QG+D G+ +P T L +L HG H
Sbjct: 6 PEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFH 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,233,216
Number of Sequences: 62578
Number of extensions: 638139
Number of successful extensions: 1719
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 104
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)