Query psy10043
Match_columns 504
No_of_seqs 445 out of 2685
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 16:24:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905|consensus 100.0 6.2E-70 1.3E-74 534.6 15.9 291 85-423 27-319 (353)
2 PRK14138 NAD-dependent deacety 100.0 8.1E-55 1.8E-59 431.5 18.7 241 41-385 2-243 (244)
3 PTZ00409 Sir2 (Silent Informat 100.0 1.2E-54 2.5E-59 435.7 17.7 245 38-383 16-262 (271)
4 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.1E-54 2.3E-59 434.2 15.4 237 43-376 1-260 (260)
5 PTZ00410 NAD-dependent SIR2; P 100.0 8.4E-54 1.8E-58 439.5 19.4 287 38-386 15-325 (349)
6 COG0846 SIR2 NAD-dependent pro 100.0 5.5E-54 1.2E-58 424.5 17.0 242 40-384 2-246 (250)
7 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 1.3E-53 2.9E-58 420.7 16.4 225 51-379 1-235 (235)
8 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 2.1E-53 4.5E-58 411.6 13.4 202 114-326 1-205 (206)
9 PRK05333 NAD-dependent deacety 100.0 2.3E-52 4.9E-57 422.8 19.9 252 38-386 7-280 (285)
10 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 2.9E-52 6.3E-57 408.0 14.2 221 47-327 1-222 (222)
11 PRK00481 NAD-dependent deacety 100.0 2.4E-51 5.1E-56 406.2 19.8 238 39-383 2-240 (242)
12 PTZ00408 NAD-dependent deacety 100.0 1.4E-51 3.1E-56 407.5 16.3 228 48-383 2-235 (242)
13 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 1.5E-49 3.2E-54 388.9 16.6 223 51-380 1-224 (224)
14 cd01411 SIR2H SIR2H: Uncharact 100.0 9.6E-50 2.1E-54 390.9 14.8 216 43-326 1-220 (225)
15 cd01407 SIR2-fam SIR2 family o 100.0 1.8E-49 3.8E-54 387.1 15.5 215 51-326 1-217 (218)
16 KOG2682|consensus 100.0 4.3E-49 9.3E-54 377.1 11.4 230 103-386 24-281 (314)
17 KOG2684|consensus 100.0 2.7E-48 5.9E-53 397.8 15.8 259 39-396 77-354 (412)
18 KOG2683|consensus 100.0 3.3E-48 7.2E-53 370.8 13.6 238 89-378 21-304 (305)
19 cd00296 SIR2 SIR2 superfamily 100.0 4.7E-45 1E-49 355.1 15.6 215 51-325 1-220 (222)
20 PF02146 SIR2: Sir2 family; I 100.0 2E-45 4.4E-50 347.6 10.7 175 58-288 1-178 (178)
21 KOG1905|consensus 99.7 1.3E-17 2.9E-22 165.5 7.8 130 1-131 6-135 (353)
22 cd01410 SIRT7 SIRT7: Eukaryoti 99.1 6.5E-11 1.4E-15 115.1 5.1 32 51-82 1-32 (206)
23 KOG2684|consensus 99.1 4.7E-11 1E-15 124.1 3.8 70 102-171 77-151 (412)
24 PRK05333 NAD-dependent deacety 99.1 5.4E-11 1.2E-15 121.0 4.1 43 103-145 9-51 (285)
25 PTZ00409 Sir2 (Silent Informat 99.1 5.1E-11 1.1E-15 120.3 3.2 67 102-169 17-84 (271)
26 cd01409 SIRT4 SIRT4: Eukaryoti 99.1 4.3E-11 9.2E-16 120.3 2.4 38 106-143 1-38 (260)
27 COG0846 SIR2 NAD-dependent pro 99.0 2E-10 4.4E-15 114.5 3.8 65 103-168 2-67 (250)
28 PTZ00410 NAD-dependent SIR2; P 98.9 4.2E-10 9.1E-15 116.9 3.7 67 102-168 16-90 (349)
29 PRK14138 NAD-dependent deacety 98.9 3.8E-10 8.3E-15 112.4 3.3 63 104-168 2-64 (244)
30 PRK00481 NAD-dependent deacety 98.9 5.4E-10 1.2E-14 111.1 3.8 66 103-169 3-68 (242)
31 cd01411 SIR2H SIR2H: Uncharact 98.9 4E-10 8.7E-15 111.0 2.8 39 106-144 1-39 (225)
32 PTZ00408 NAD-dependent deacety 98.9 5E-10 1.1E-14 111.5 1.3 54 111-165 2-55 (242)
33 cd01408 SIRT1 SIRT1: Eukaryoti 98.9 6.6E-10 1.4E-14 110.1 2.0 56 114-169 1-62 (235)
34 KOG2683|consensus 98.9 1.7E-09 3.8E-14 105.1 4.0 50 32-81 27-77 (305)
35 cd01407 SIR2-fam SIR2 family o 98.8 2.3E-09 5E-14 104.9 2.4 56 114-169 1-56 (218)
36 cd01413 SIR2_Af2 SIR2_Af2: Arc 98.8 1.4E-09 3E-14 106.9 0.7 58 111-169 2-59 (222)
37 cd01412 SIRT5_Af1_CobB SIRT5_A 98.7 7.1E-09 1.5E-13 101.8 2.3 54 114-168 1-54 (224)
38 cd00296 SIR2 SIR2 superfamily 98.6 1.2E-08 2.5E-13 99.5 2.2 57 114-170 1-58 (222)
39 KOG2682|consensus 98.6 3.8E-08 8.2E-13 96.0 5.3 65 39-104 23-96 (314)
40 cd01406 SIR2-like Sir2-like: P 98.3 6.8E-07 1.5E-11 88.5 4.2 77 114-190 1-112 (242)
41 PF02146 SIR2: Sir2 family; I 98.1 4.3E-07 9.3E-12 86.1 -0.0 26 121-146 1-27 (178)
42 PF00205 TPP_enzyme_M: Thiamin 92.4 0.5 1.1E-05 42.4 7.3 25 103-127 1-25 (137)
43 cd01406 SIR2-like Sir2-like: P 92.1 0.077 1.7E-06 52.5 1.7 22 51-72 1-22 (242)
44 PRK08322 acetolactate synthase 83.7 2.8 6.1E-05 46.4 7.2 71 266-384 255-325 (547)
45 PRK08979 acetolactate synthase 83.3 2.7 5.8E-05 47.1 6.9 73 266-385 265-337 (572)
46 PRK07979 acetolactate synthase 82.4 3.1 6.8E-05 46.5 7.0 72 266-384 265-336 (574)
47 PRK07789 acetolactate synthase 82.2 2.8 6.1E-05 47.3 6.6 72 266-384 290-361 (612)
48 PRK06154 hypothetical protein; 80.4 4.2 9.1E-05 45.5 7.1 70 266-384 273-342 (565)
49 TIGR02418 acolac_catab acetola 80.3 4.6 0.0001 44.7 7.3 71 266-384 255-325 (539)
50 PRK07525 sulfoacetaldehyde ace 80.0 4.3 9.3E-05 45.6 7.1 21 364-384 313-333 (588)
51 PRK07418 acetolactate synthase 79.8 3.8 8.2E-05 46.3 6.6 21 364-384 334-354 (616)
52 PRK06546 pyruvate dehydrogenas 79.7 3.9 8.3E-05 45.9 6.6 21 364-384 303-323 (578)
53 PRK07524 hypothetical protein; 79.3 4.9 0.00011 44.5 7.1 21 364-384 309-329 (535)
54 PRK06882 acetolactate synthase 79.1 4.8 0.0001 45.0 7.0 21 364-384 316-336 (574)
55 PRK08527 acetolactate synthase 78.4 4.9 0.00011 44.8 6.9 21 364-384 313-333 (563)
56 CHL00099 ilvB acetohydroxyacid 78.3 4.2 9.1E-05 45.7 6.3 21 364-384 327-347 (585)
57 PRK09107 acetolactate synthase 78.3 5.3 0.00011 45.1 7.1 21 364-384 324-344 (595)
58 PF04574 DUF592: Protein of un 78.1 0.5 1.1E-05 43.9 -0.9 50 3-57 104-153 (153)
59 PRK08611 pyruvate oxidase; Pro 77.8 5.7 0.00012 44.6 7.1 21 364-384 306-326 (576)
60 PRK06112 acetolactate synthase 77.7 6 0.00013 44.3 7.3 22 266-287 277-298 (578)
61 TIGR01504 glyox_carbo_lig glyo 77.5 5.1 0.00011 45.1 6.6 20 364-383 313-332 (588)
62 PRK06456 acetolactate synthase 77.2 6.1 0.00013 44.1 7.1 21 364-384 318-338 (572)
63 PRK06725 acetolactate synthase 76.7 6.7 0.00015 44.0 7.3 21 364-384 324-344 (570)
64 PRK08266 hypothetical protein; 76.6 4.9 0.00011 44.5 6.2 21 364-384 305-325 (542)
65 PRK06466 acetolactate synthase 76.5 6 0.00013 44.3 6.8 21 364-384 316-336 (574)
66 PLN02470 acetolactate synthase 76.0 6.7 0.00014 44.0 7.1 21 364-384 323-343 (585)
67 PRK08617 acetolactate synthase 75.4 7 0.00015 43.5 7.0 21 364-384 311-331 (552)
68 PRK08273 thiamine pyrophosphat 74.7 7.4 0.00016 43.8 7.0 69 266-384 265-333 (597)
69 PRK06965 acetolactate synthase 73.7 7.3 0.00016 43.8 6.6 21 364-384 332-352 (587)
70 PRK08327 acetolactate synthase 73.2 6.7 0.00015 43.9 6.2 21 364-384 324-344 (569)
71 PRK11269 glyoxylate carboligas 71.7 9.7 0.00021 42.8 7.0 21 364-384 314-334 (591)
72 PRK08199 thiamine pyrophosphat 71.1 11 0.00023 42.0 7.2 21 364-384 317-337 (557)
73 PRK06048 acetolactate synthase 70.8 11 0.00023 42.2 7.0 21 364-384 317-337 (561)
74 TIGR03457 sulphoacet_xsc sulfo 70.3 12 0.00026 41.9 7.4 21 364-384 309-329 (579)
75 PRK09124 pyruvate dehydrogenas 70.3 10 0.00022 42.5 6.7 21 364-384 304-324 (574)
76 PRK08978 acetolactate synthase 70.0 11 0.00024 41.8 7.0 20 364-383 306-325 (548)
77 TIGR02720 pyruv_oxi_spxB pyruv 69.0 13 0.00029 41.6 7.3 21 364-384 306-326 (575)
78 PRK06276 acetolactate synthase 68.1 15 0.00032 41.3 7.5 21 364-384 313-333 (586)
79 TIGR00118 acolac_lg acetolacta 67.6 13 0.00028 41.4 6.8 21 364-384 311-331 (558)
80 PRK08155 acetolactate synthase 66.9 14 0.00031 41.2 7.0 21 364-384 321-341 (564)
81 PRK05858 hypothetical protein; 66.7 14 0.00031 41.0 6.9 69 267-384 256-324 (542)
82 PRK07064 hypothetical protein; 66.4 14 0.00031 40.8 6.9 21 364-384 307-327 (544)
83 PRK07282 acetolactate synthase 65.9 14 0.00031 41.3 6.8 21 364-384 320-340 (566)
84 smart00834 CxxC_CXXC_SSSS Puta 64.9 4.9 0.00011 28.4 1.9 34 204-246 3-37 (41)
85 COG0028 IlvB Thiamine pyrophos 64.5 14 0.00031 41.4 6.4 21 364-384 309-329 (550)
86 PRK07710 acetolactate synthase 64.0 17 0.00036 40.8 6.8 21 364-384 325-345 (571)
87 KOG1185|consensus 63.7 18 0.00038 40.0 6.6 22 364-385 322-343 (571)
88 TIGR00173 menD 2-succinyl-5-en 61.8 14 0.0003 39.8 5.6 21 364-384 317-337 (432)
89 PRK09259 putative oxalyl-CoA d 60.5 19 0.00042 40.2 6.6 21 364-384 317-337 (569)
90 TIGR03254 oxalate_oxc oxalyl-C 59.9 19 0.0004 40.2 6.3 21 364-384 310-330 (554)
91 COG3383 Uncharacterized anaero 59.5 5.5 0.00012 45.9 2.0 83 233-327 384-474 (978)
92 COG3091 SprT Zn-dependent meta 58.5 2.7 5.8E-05 39.2 -0.5 78 161-246 69-151 (156)
93 cd02750 MopB_Nitrate-R-NarG-li 57.0 6.9 0.00015 42.6 2.2 56 269-325 166-221 (461)
94 PF09723 Zn-ribbon_8: Zinc rib 55.9 8.6 0.00019 27.9 1.9 34 204-246 3-38 (42)
95 PRK06457 pyruvate dehydrogenas 55.8 28 0.0006 38.8 6.8 21 266-286 252-272 (549)
96 cd02755 MopB_Thiosulfate-R-lik 53.6 6.1 0.00013 42.8 1.1 56 270-325 153-208 (454)
97 cd02766 MopB_3 The MopB_3 CD i 52.7 8.2 0.00018 42.5 2.0 55 269-324 153-207 (501)
98 PRK07092 benzoylformate decarb 51.7 34 0.00075 37.8 6.7 21 364-384 316-336 (530)
99 PF07295 DUF1451: Protein of u 51.7 9.4 0.0002 35.5 1.9 29 204-244 110-139 (146)
100 TIGR03393 indolpyr_decarb indo 51.2 18 0.00038 40.2 4.3 21 266-286 265-285 (539)
101 PRK11032 hypothetical protein; 51.1 8.5 0.00018 36.4 1.5 29 204-244 122-151 (160)
102 cd02765 MopB_4 The MopB_4 CD i 50.7 9.6 0.00021 42.7 2.1 56 269-325 155-210 (567)
103 cd02752 MopB_Formate-Dh-Na-lik 50.2 8.5 0.00019 44.1 1.6 55 269-324 165-220 (649)
104 cd02759 MopB_Acetylene-hydrata 46.4 9.2 0.0002 41.7 1.1 56 270-325 157-212 (477)
105 TIGR02605 CxxC_CxxC_SSSS putat 46.3 14 0.00031 27.6 1.8 31 204-243 3-34 (52)
106 cd00368 Molybdopterin-Binding 46.2 11 0.00023 39.1 1.5 55 269-324 152-206 (374)
107 PLN02573 pyruvate decarboxylas 46.2 38 0.00082 38.1 6.0 22 266-287 284-305 (578)
108 cd02762 MopB_1 The MopB_1 CD i 41.2 14 0.00031 40.9 1.6 54 270-325 153-213 (539)
109 COG2331 Uncharacterized protei 41.1 16 0.00034 30.4 1.4 42 205-255 11-58 (82)
110 TIGR01973 NuoG NADH-quinone ox 40.4 17 0.00036 41.1 2.0 55 269-325 358-414 (603)
111 cd02763 MopB_2 The MopB_2 CD i 39.1 18 0.00039 41.7 2.0 56 269-325 151-206 (679)
112 PRK14873 primosome assembly pr 37.6 56 0.0012 37.7 5.6 46 344-392 526-572 (665)
113 TIGR01553 formate-DH-alph form 37.5 18 0.0004 43.5 1.9 55 269-325 217-272 (1009)
114 cd02768 MopB_NADH-Q-OR-NuoG2 M 37.5 23 0.0005 37.0 2.4 52 269-324 144-197 (386)
115 cd02758 MopB_Tetrathionate-Ra 37.4 18 0.00039 42.1 1.7 55 269-324 207-268 (735)
116 TIGR00595 priA primosomal prot 36.4 1.6E+02 0.0034 32.8 8.8 23 263-285 300-322 (505)
117 cd02753 MopB_Formate-Dh-H Form 36.2 19 0.00041 39.5 1.6 56 269-325 152-207 (512)
118 TIGR03479 DMSO_red_II_alp DMSO 36.2 21 0.00046 42.5 2.1 56 269-325 220-275 (912)
119 cd02767 MopB_ydeP The MopB_yde 35.6 20 0.00044 40.4 1.7 44 269-314 159-203 (574)
120 PRK09939 putative oxidoreducta 35.4 20 0.00043 41.9 1.7 45 269-315 204-249 (759)
121 COG3962 Acetolactate synthase 34.8 69 0.0015 35.5 5.4 22 266-287 288-309 (617)
122 cd02771 MopB_NDH-1_NuoG2-N7 Mo 34.0 26 0.00057 37.9 2.2 43 269-313 141-185 (472)
123 cd02770 MopB_DmsA-EC This CD ( 33.9 26 0.00057 39.6 2.3 56 269-324 162-220 (617)
124 cd02754 MopB_Nitrate-R-NapA-li 33.8 22 0.00048 39.5 1.6 54 269-324 153-209 (565)
125 PRK07449 2-succinyl-5-enolpyru 33.8 71 0.0015 35.6 5.6 19 267-285 280-298 (568)
126 cd02760 MopB_Phenylacetyl-CoA- 33.7 22 0.00048 41.5 1.6 56 269-325 169-225 (760)
127 COG2051 RPS27A Ribosomal prote 32.6 21 0.00044 28.9 0.8 36 199-245 12-48 (67)
128 PF00205 TPP_enzyme_M: Thiamin 32.4 29 0.00062 30.9 1.9 21 266-286 70-90 (137)
129 PRK07860 NADH dehydrogenase su 32.3 22 0.00048 41.7 1.4 55 268-324 371-428 (797)
130 PF00384 Molybdopterin: Molybd 32.2 12 0.00025 39.6 -0.8 57 269-325 107-163 (432)
131 PRK15488 thiosulfate reductase 31.9 22 0.00047 41.2 1.3 55 270-324 193-248 (759)
132 COG0549 ArcC Carbamate kinase 31.4 79 0.0017 32.8 4.9 79 24-122 157-235 (312)
133 TIGR01591 Fdh-alpha formate de 31.2 24 0.00053 40.0 1.5 54 269-324 151-205 (671)
134 cd02761 MopB_FmdB-FwdB The Mop 31.1 62 0.0013 34.1 4.5 52 272-325 130-190 (415)
135 PRK00398 rpoP DNA-directed RNA 30.6 32 0.00069 25.2 1.5 28 205-244 2-30 (46)
136 PF07544 Med9: RNA polymerase 30.3 82 0.0018 26.3 4.1 46 4-49 25-70 (83)
137 PRK03363 fixB putative electro 30.1 97 0.0021 32.4 5.5 23 362-384 290-312 (313)
138 PF13678 Peptidase_M85: NFkB-p 29.7 47 0.001 33.3 2.9 28 369-396 179-206 (250)
139 PLN00022 electron transfer fla 29.6 95 0.002 33.1 5.4 23 362-384 331-353 (356)
140 PRK11916 electron transfer fla 29.5 97 0.0021 32.4 5.4 23 362-384 289-311 (312)
141 PRK06266 transcription initiat 29.0 28 0.0006 33.4 1.2 31 206-247 117-148 (178)
142 TIGR02098 MJ0042_CXXC MJ0042 f 28.8 32 0.00069 24.0 1.2 33 206-245 2-35 (38)
143 PRK04940 hypothetical protein; 28.6 34 0.00075 32.9 1.8 63 246-316 26-95 (180)
144 TIGR01706 NAPA periplasmic nit 28.4 40 0.00087 39.7 2.6 56 269-324 202-258 (830)
145 COG3925 N-terminal domain of t 28.4 37 0.00081 29.4 1.7 32 272-314 39-70 (103)
146 PRK13532 nitrate reductase cat 28.1 36 0.00079 40.0 2.2 56 269-324 202-258 (830)
147 cd02757 MopB_Arsenate-R This C 28.0 27 0.00059 38.7 1.1 56 270-325 159-215 (523)
148 PRK05580 primosome assembly pr 27.5 1.5E+02 0.0032 34.3 6.9 23 263-285 468-490 (679)
149 PF13248 zf-ribbon_3: zinc-rib 27.2 37 0.0008 22.0 1.2 10 206-215 2-11 (26)
150 cd02751 MopB_DMSOR-like The Mo 26.8 43 0.00094 37.8 2.5 54 270-325 165-229 (609)
151 TIGR00354 polC DNA polymerase, 26.7 32 0.0007 40.8 1.4 37 199-249 1000-1042(1095)
152 PRK06260 threonine synthase; V 25.9 43 0.00093 35.8 2.1 12 204-215 1-12 (397)
153 TIGR00373 conserved hypothetic 25.7 30 0.00066 32.4 0.8 32 205-247 108-140 (158)
154 TIGR02166 dmsA_ynfE anaerobic 25.1 43 0.00094 39.0 2.1 56 269-324 210-269 (797)
155 cd02764 MopB_PHLH The MopB_PHL 25.1 46 0.00099 36.8 2.2 56 270-325 193-255 (524)
156 PRK08166 NADH dehydrogenase su 24.8 38 0.00082 40.0 1.6 82 269-370 367-449 (847)
157 cd02774 MopB_Res-Cmplx1_Nad11- 24.2 40 0.00088 35.8 1.5 45 267-313 142-188 (366)
158 COG1198 PriA Primosomal protei 23.6 99 0.0021 36.1 4.5 45 346-392 592-637 (730)
159 TIGR03129 one_C_dehyd_B formyl 23.5 95 0.0021 32.7 4.2 52 272-325 136-196 (421)
160 cd02773 MopB_Res-Cmplx1_Nad11 23.4 49 0.0011 34.7 1.9 48 269-318 141-190 (375)
161 PRK04023 DNA polymerase II lar 23.1 42 0.00091 40.2 1.5 37 199-249 1025-1067(1121)
162 PRK14714 DNA polymerase II lar 22.9 42 0.00091 41.1 1.4 37 199-249 1241-1283(1337)
163 PRK13936 phosphoheptose isomer 22.9 92 0.002 29.9 3.6 30 34-64 27-56 (197)
164 cd02769 MopB_DMSOR-BSOR-TMAOR 22.6 50 0.0011 37.4 1.9 52 270-321 167-226 (609)
165 TIGR01701 Fdhalpha-like oxidor 21.9 48 0.001 38.6 1.6 45 269-315 194-239 (743)
166 PF13717 zinc_ribbon_4: zinc-r 21.8 54 0.0012 23.1 1.3 32 206-244 2-34 (36)
167 PF08660 Alg14: Oligosaccharid 21.8 1.7E+02 0.0037 27.7 5.1 32 97-128 76-107 (170)
168 TIGR00509 bisC_fam molybdopter 21.3 55 0.0012 38.1 2.0 53 271-323 165-225 (770)
169 PRK12496 hypothetical protein; 21.0 58 0.0013 30.7 1.7 52 178-246 94-154 (164)
170 KOG1680|consensus 20.5 1.1E+02 0.0025 31.5 3.8 18 50-67 81-98 (290)
171 PRK14990 anaerobic dimethyl su 20.0 71 0.0015 37.4 2.6 57 268-324 226-286 (814)
No 1
>KOG1905|consensus
Probab=100.00 E-value=6.2e-70 Score=534.57 Aligned_cols=291 Identities=51% Similarity=0.745 Sum_probs=259.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHHHHhccceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHH
Q psy10043 85 VKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHM 164 (504)
Q Consensus 85 laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~ 164 (504)
.+.+..+++|+|+++..++.+|+++++++||+|++|||||||+||||||||++|+|+..+++++.+..+|+.|.||.+||
T Consensus 27 ~k~~~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~~~~~df~~ArPt~THm 106 (353)
T KOG1905|consen 27 GKQGRPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKDKFGVDFSEARPTVTHM 106 (353)
T ss_pred ccccCccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCccccCCchhhcCCcchHH
Confidence 44556889999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCC
Q psy10043 165 ALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGE 243 (504)
Q Consensus 165 ~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg 243 (504)
+|.+|++.|++++||||||||||.|+|+|+++++|+|||++.++|.+|..++.+++.++....++..++.++..| +|+.
T Consensus 107 ai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~at~R~ct~~k~~~~rs 186 (353)
T KOG1905|consen 107 AIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLKATGRHCTGRKCRKCRS 186 (353)
T ss_pred HHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeecccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999998877778887777777778888887 6665
Q ss_pred CccccEEEecCCCCCCChhh-HHHHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccce
Q psy10043 244 PLLDTIIHFGEKGVLLWPLN-WDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATL 322 (504)
Q Consensus 244 ~LrP~IV~FGE~~~~~~~~~-~~~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~ 322 (504)
.+ ..++.|++......|.+ |+.|.++.++||++||+||||+|.|.|++.|.+
T Consensus 187 cr-g~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~-------------------------- 239 (353)
T KOG1905|consen 187 CR-GTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKM-------------------------- 239 (353)
T ss_pred cc-cchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhH--------------------------
Confidence 44 44444444432233455 999999999999999999999998777654432
Q ss_pred eecCCCcchhccccccCCCCCCCCCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcCCCCCCCcCCCCccccccC
Q psy10043 323 KINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNLDIPAYDKRRDPVFYHSS 402 (504)
Q Consensus 323 ~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg~~ip~~~~~~d~~~~~~~ 402 (504)
.+.|+|++|||+||||+|..|+++|+|+||+||..||++||++||.|++.+||++.+++
T Consensus 240 ---------------------~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t 298 (353)
T KOG1905|consen 240 ---------------------KKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLT 298 (353)
T ss_pred ---------------------hccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccc
Confidence 23577889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCCCCcch
Q psy10043 403 HLIQPEYHTVRKPMLDLPDEE 423 (504)
Q Consensus 403 ~l~~~e~~~~~~~~~~~~~~~ 423 (504)
.++++|+++.+++.++...++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (353)
T KOG1905|consen 299 LSRPGEEHTIPQPLLKNSVEE 319 (353)
T ss_pred cCCCCcccccccccccccccc
Confidence 999999999999999887665
No 2
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=8.1e-55 Score=431.51 Aligned_cols=241 Identities=30% Similarity=0.380 Sum_probs=197.6
Q ss_pred HHHHHHHHhCCcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhccceeeec
Q psy10043 41 KKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYT 120 (504)
Q Consensus 41 ~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~T 120 (504)
++++++|++|++|||+||||||++||||||||++|+|+++ ++.+.+. ..|..+|+.+|.++.....
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~-~~~~~~~-~~~~~~p~~~w~~~~~~~~------------ 67 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKY-PQNVFDI-DFFYSHPEEFYRFAKEGIF------------ 67 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCC-cccccCH-HHHHhCHHHHHHHHHHhhc------------
Confidence 5788999999999999999999999999999999999875 4566664 7788889888876653210
Q ss_pred CCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCcccc
Q psy10043 121 GAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEV 200 (504)
Q Consensus 121 GAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viEl 200 (504)
.+.+++||.+|++|+.|+++|++.+||||||||||++||. ++|+|+
T Consensus 68 --------------------------------~~~~~~Pn~~H~ala~L~~~g~~~~viTQNIDgLh~~aG~--~~Viel 113 (244)
T PRK14138 68 --------------------------------PMLEAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGS--KKVIEL 113 (244)
T ss_pred --------------------------------ccccCCCCHHHHHHHHHHHcCCceEEEeecccChhhHcCC--CeEEEc
Confidence 1234789999999999999999999999999999999995 479999
Q ss_pred CCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEE
Q psy10043 201 HGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILC 279 (504)
Q Consensus 201 HG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLV 279 (504)
|||++..+|+.|++.+.+.... .......+|.| .|||.|||+||||||.+ +...++.+.+++++||++||
T Consensus 114 HG~~~~~~C~~C~~~~~~~~~~------~~~~~~~~p~Cp~Cgg~lrP~Vv~FgE~~---p~~~~~~~~~~~~~aDl~lv 184 (244)
T PRK14138 114 HGNVEEYYCVRCGKRYTVEDVI------EKLEKSDVPRCDDCSGLIRPNIVFFGEAL---PQDALREAIRLSSKASLMIV 184 (244)
T ss_pred cCCcCeeEECCCCCcccHHHHH------HHHhcCCCCCCCCCCCeECCCEEECCCcC---CHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999753321111 11123458999 99999999999999985 34578899999999999999
Q ss_pred EcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccccCC
Q psy10043 280 VGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTP 359 (504)
Q Consensus 280 vGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~t~ 359 (504)
|||||+|+|+ ..++..+ .++++++++||+++|+
T Consensus 185 iGTSl~V~pa---~~l~~~~--------------------------------------------~~~g~~~i~iN~~~t~ 217 (244)
T PRK14138 185 MGSSLVVYPA---AELPLIT--------------------------------------------VRSGGKLVIVNLGETP 217 (244)
T ss_pred eCcCCeeecH---hHHHHHH--------------------------------------------HHcCCeEEEEcCCCCC
Confidence 9999999743 3222112 1235567888888999
Q ss_pred CCCcccEEEecCHHHHHHHHHHHcCC
Q psy10043 360 KDDQATLKINGKCDVVFKQLMAHLNL 385 (504)
Q Consensus 360 ~d~~adl~i~g~cD~v~~~L~~~Lg~ 385 (504)
.|..+|++|+|+++++|++||+.||+
T Consensus 218 ~d~~~~~~i~~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 218 LDDIATLKYNMDVVEFANRVMSEGGI 243 (244)
T ss_pred CCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999986
No 3
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=1.2e-54 Score=435.71 Aligned_cols=245 Identities=26% Similarity=0.342 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCcccccccCCcccc-cchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhccce
Q psy10043 38 AKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSN-FTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHV 116 (504)
Q Consensus 38 ~~~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~-~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~i 116 (504)
..+++++++|++|++|||||||||||+||||||||+ +|+|++++++.+++. ..|..+|+.+|+++.++..
T Consensus 16 ~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~~~t~-~~f~~~p~~~~~~~~~~~~-------- 86 (271)
T PTZ00409 16 ITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTI-WGFWKYPEKIWEVIRDISS-------- 86 (271)
T ss_pred ccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHHhccH-HHHHHChHHHHHHHHHhhh--------
Confidence 357789999999999999999999999999999998 699999999888885 7788899999887744210
Q ss_pred eeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCC
Q psy10043 117 VVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSV 196 (504)
Q Consensus 117 VV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~ 196 (504)
...++||.+|++|++|+++|++.+||||||||||+|||. ++
T Consensus 87 -------------------------------------~~~a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~ 127 (271)
T PTZ00409 87 -------------------------------------DYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TK 127 (271)
T ss_pred -------------------------------------cccCCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--Cc
Confidence 124689999999999999999999999999999999996 47
Q ss_pred ccccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCCCCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCe
Q psy10043 197 LSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADL 276 (504)
Q Consensus 197 viElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDl 276 (504)
|+|+|||++..+|+.|+......... ...........+|+|.|||.|||+||||||.+ +...++.|.+++++||+
T Consensus 128 V~ElHG~l~~~~C~~C~~~~~~~~~~--~~~~~~~~~~~~P~C~Cgg~lrP~VV~FGE~l---p~~~~~~a~~~~~~aDl 202 (271)
T PTZ00409 128 VIPLHGSVFEARCCTCRKTIQLNKIM--LQKTSHFMHQLPPECPCGGIFKPNVILFGEVI---PKSLLKQAEKEIDKCDL 202 (271)
T ss_pred EEEeccCcCcceeCCCCCCcccCHHH--HhhhhhhccCCCCCCCCCCcccCcEEEeCCcC---CHHHHHHHHHHHHcCCE
Confidence 99999999999999999753321111 00000011234689999999999999999985 34578899999999999
Q ss_pred eEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccc
Q psy10043 277 ILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQ 356 (504)
Q Consensus 277 lLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q 356 (504)
+|||||||+|+|++ .++..+.. +++++++||++
T Consensus 203 llviGTSl~V~pa~---~l~~~a~~--------------------------------------------~g~~vi~IN~~ 235 (271)
T PTZ00409 203 LLVVGTSSSVSTAT---NLCYRAHR--------------------------------------------KKKKIVEVNIS 235 (271)
T ss_pred EEEECCCCcccCHH---HHHHHHHH--------------------------------------------cCCCEEEECCC
Confidence 99999999997543 33222222 34455677777
Q ss_pred cCCCC-CcccEEEecCHHHHHHHHHHHc
Q psy10043 357 WTPKD-DQATLKINGKCDVVFKQLMAHL 383 (504)
Q Consensus 357 ~t~~d-~~adl~i~g~cD~v~~~L~~~L 383 (504)
+|+.+ ..+|++|.|++++++. |.+.|
T Consensus 236 ~t~~~~~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 236 KTYITNRISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred CCCCCCccccEEEECcHHHHHH-HHHHh
Confidence 77766 4579999999999996 33444
No 4
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.1e-54 Score=434.24 Aligned_cols=237 Identities=29% Similarity=0.395 Sum_probs=182.8
Q ss_pred HHHHHHhCCcEEEEccCCcccccccCCcccccchhhh-hhcccccccccccCCChHHHHHHHHHHHHHHHhccceeeecC
Q psy10043 43 LAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRL-KKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTG 121 (504)
Q Consensus 43 l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~-~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TG 121 (504)
|+++|++|++|||||||||||+||||||||++|+|++ +++. + ..+|..+|+.+|.++.......
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~---~-~~~f~~~p~~~~~~~~~~~~~~----------- 65 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPM---T-HQEFMRSPAARQRYWARSFVGW----------- 65 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCC---C-HHHHHhCcHHHHHHHHHHHhhh-----------
Confidence 4678999999999999999999999999999999998 5553 3 2667788887776654332110
Q ss_pred CCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccC
Q psy10043 122 AGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVH 201 (504)
Q Consensus 122 AGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElH 201 (504)
..+..++||.+|++|++|+++|++.+||||||||||++||+ ++|+|+|
T Consensus 66 ------------------------------~~~~~~~Pn~~H~~la~L~~~g~~~~viTQNIDgLh~~aG~--~~vielH 113 (260)
T cd01409 66 ------------------------------PRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGS--RNVVELH 113 (260)
T ss_pred ------------------------------hhhccCCCCHHHHHHHHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEe
Confidence 01235789999999999999999999999999999999997 4799999
Q ss_pred CccceeeccCCCCCcccccccc-hhh----------------h----hhhhhccCCCCC-CCCCCccccEEEecCCCCCC
Q psy10043 202 GNMSVEVCAHCDPVKYYWRVFD-VTE----------------H----TARYAHQTARKC-SCGEPLLDTIIHFGEKGVLL 259 (504)
Q Consensus 202 G~l~~~~C~~C~~~~~~~~~~~-~~~----------------~----~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~ 259 (504)
||++..+|+.|+.........+ ... + ........+|.| .|||.|||+||||||++
T Consensus 114 G~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~VV~FGE~l--- 190 (260)
T cd01409 114 GSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECERCGGVLKPDVVFFGENV--- 190 (260)
T ss_pred eecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccccchhhcccCCCCCCCCCCCEECCCEEECCCCC---
Confidence 9999999999997543110000 000 0 000112347999 99999999999999985
Q ss_pred ChhhHHHHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccC
Q psy10043 260 WPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWG 339 (504)
Q Consensus 260 ~~~~~~~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~ 339 (504)
+...+..|.+++++||++|||||||+|+|++. ++..+.
T Consensus 191 p~~~~~~a~~~~~~aDlllviGTSl~V~pa~~---l~~~a~--------------------------------------- 228 (260)
T cd01409 191 PRDRVVTAAARLAEADALLVLGSSLMVYSGYR---FVLAAA--------------------------------------- 228 (260)
T ss_pred CHHHHHHHHHHHhcCCEEEEeCcCceecchhh---HHHHHH---------------------------------------
Confidence 34578999999999999999999999975332 222221
Q ss_pred CCCCCCCCCceEEeccccCCCCCcccEEEecCHHHHH
Q psy10043 340 LDRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVF 376 (504)
Q Consensus 340 ~~~~~~~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~ 376 (504)
++++++++||+++|+.|..+|++|+|+|++++
T Consensus 229 -----~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 229 -----EAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred -----HCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 23556678888888888889999999999874
No 5
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=8.4e-54 Score=439.54 Aligned_cols=287 Identities=23% Similarity=0.328 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHh--CCcEEEEccCCcccccccCCcccc-cchhhhh------hcccccccccccCCChHHHHHHHHHHHH
Q psy10043 38 AKCKKLAEAIQN--AKHVVVYTGAGISTAAKIPDYRSN-FTIYRLK------KINKVKSRNEELEDKPEILAAKCKQLAE 108 (504)
Q Consensus 38 ~~~~~l~~~l~~--~~~ivv~TGAGiS~~SGiPdfR~~-~g~Wr~~------kpe~laS~l~efeDdPe~l~eki~~Lae 108 (504)
..++.++++|++ +++|||||||||||+||||||||+ +|+|++. .|+++.+. ..|.++|+.+|.++..+.
T Consensus 15 ~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~-~~f~~~P~~f~~~~r~~~- 92 (349)
T PTZ00410 15 PTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSL-TLLREKPEVFYSIAREMD- 92 (349)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCH-HHHHHCHHHHHHHHHHhh-
Confidence 456789999987 689999999999999999999999 5999874 34555553 667788887776653311
Q ss_pred HHHhccceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhh
Q psy10043 109 AIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHL 188 (504)
Q Consensus 109 lI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~ 188 (504)
+|. ..++||.+|++|+.|+++|++.++|||||||||+
T Consensus 93 ------------------------------~~~-------------~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~ 129 (349)
T PTZ00410 93 ------------------------------LWP-------------GHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLER 129 (349)
T ss_pred ------------------------------ccc-------------CcCCCCHHHHHHHHHHhcCCcceEEecchhhhHh
Confidence 110 2468999999999999999999999999999999
Q ss_pred hcCCCCCCccccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHH
Q psy10043 189 RSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGA 267 (504)
Q Consensus 189 rAG~~~~~viElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a 267 (504)
+||++.++|+|+|||+++.+|..|+..+... ..........+|+| .|||.|||+||||||.++ ...+. +
T Consensus 130 rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~------~~~~~~~~~~vP~C~~CgG~lRPdVVlFGE~lp---~~~~~-a 199 (349)
T PTZ00410 130 AAGVPPSLLVEAHGSFSAASCIECHTPYDIE------QAYLEARSGKVPHCSTCGGIVKPDVVFFGENLP---DAFFN-V 199 (349)
T ss_pred hcCCCcccEEEeccCCCeeEeCCCCCCcchh------HHHHHhhcCCCCCCCCCCCccCCcEEecCCcCC---HHHHH-H
Confidence 9999988999999999999999999643211 11011123458999 999999999999999852 33444 8
Q ss_pred HHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCC-Cc-----chhccccc----
Q psy10043 268 NKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGK-YP-----VLRKYGWL---- 337 (504)
Q Consensus 268 ~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~-~p-----~~~~~~~~---- 337 (504)
.+++++||++|||||||+|+|+ +.++..+. .+.++++||++++... -+.+... .+ +..+.|.+
T Consensus 200 ~~~~~~aDllLVIGTSL~V~Pa---a~l~~~a~-~~~pvviIN~e~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~ 272 (349)
T PTZ00410 200 HHDIPEAELLLIIGTSLQVHPF---ALLACVVP-KDVPRVLFNLERVGGL---MFRFPTDPLTTFHADSVAKEGRSSSSS 272 (349)
T ss_pred HHHHHhCCEEEEECcCCcccCH---HHHHHHHh-cCCCEEEECccccCCc---eeeccCCccccchhhhhhhcccCcccc
Confidence 8999999999999999999754 44443333 4578899999987532 1111110 00 00000000
Q ss_pred -cCC---CCCCCCCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcCCC
Q psy10043 338 -WGL---DRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNLD 386 (504)
Q Consensus 338 -~~~---~~~~~~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg~~ 386 (504)
... .......+---.-+....+.+...|+++.|+||+.+..|++.|||.
T Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~~ 325 (349)
T PTZ00410 273 SRSSSDSSTSSSSDGYGQFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGLG 325 (349)
T ss_pred ccccccccccccccccccccccccCccccccceeecccchHHHHHHHHHhCcH
Confidence 000 0000000000001112234566789999999999999999999996
No 6
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=5.5e-54 Score=424.53 Aligned_cols=242 Identities=31% Similarity=0.440 Sum_probs=203.5
Q ss_pred HHHHHHHHHhCCcEEEEccCCcccccccCCcccccchhh-hhhcccccccccccCCChHHHHHHHHHHHHHHHhccceee
Q psy10043 40 CKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYR-LKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVV 118 (504)
Q Consensus 40 ~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr-~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV 118 (504)
++++++++.+|++|||+|||||||+|||||||+.+|+|. +++++.+++. +.|..+|+.+|.++.++....
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~-~~f~~~p~~~~~f~~~~~~~~-------- 72 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASP-SGFRRDPELVWDFYSERLRLL-------- 72 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCH-HHHhhCHHHHHHHHHHHHHhh--------
Confidence 467889999999999999999999999999999999999 9999999996 889999999999988766532
Q ss_pred ecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCcc
Q psy10043 119 YTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198 (504)
Q Consensus 119 ~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~vi 198 (504)
..++||.+|++|++|+++|++.++|||||||||++||+. +|+
T Consensus 73 ------------------------------------~~a~Pn~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~--~Vi 114 (250)
T COG0846 73 ------------------------------------YLAQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGSK--NVI 114 (250)
T ss_pred ------------------------------------hcCCCCHHHHHHHHHhhcCCceEEEecccchHHHHcCCC--cEE
Confidence 226899999999999999999999999999999999986 799
Q ss_pred ccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCC-CccccEEEecCCCCCCChhhHHHHHHHHhcCCe
Q psy10043 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGE-PLLDTIIHFGEKGVLLWPLNWDGANKNADRADL 276 (504)
Q Consensus 199 ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg-~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDl 276 (504)
||||++...+|..|+....... +.. ......+|+| .||+ .|||+||||||.+ +...+..+.+.+++||+
T Consensus 115 ~lHGsl~~~~C~~C~~~~~~~~---~~~---~~~~~~~p~C~~Cg~~~lrP~VV~fGE~l---p~~~~~~~~~~~~~~d~ 185 (250)
T COG0846 115 ELHGSLKRVRCSKCGNQYYDED---VIK---FIEDGLIPRCPKCGGPVLRPDVVWFGEPL---PASFLDEALEALKEADL 185 (250)
T ss_pred EeccceeeeEeCCCcCccchhh---hhh---hcccCCCCcCccCCCccccCCEEEeCCCC---CHHHHHHHHHHhccCCE
Confidence 9999999999999997533221 111 0112258999 9999 9999999999995 33457889999999999
Q ss_pred eEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccc
Q psy10043 277 ILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQ 356 (504)
Q Consensus 277 lLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q 356 (504)
+||+||||+|+|++. + |.+ .+..++++++||..
T Consensus 186 liviGTSl~V~Paa~---~--------p~~------------------------------------~~~~g~~~i~iN~~ 218 (250)
T COG0846 186 LIVIGTSLKVYPAAG---L--------PEL------------------------------------AKRRGAKVIEINLE 218 (250)
T ss_pred EEEECcceEEcChhh---h--------hHH------------------------------------HHhcCCEEEEECCC
Confidence 999999999975432 1 110 12346677888888
Q ss_pred cCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 357 WTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 357 ~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
.|+.+..+|+.|+++|+++++.|++.+.
T Consensus 219 ~~~~~~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 219 PTRLDPIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred cccCcchhHHHHHhhHHHHHHHHHHHhh
Confidence 8888999999999999999999998875
No 7
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=1.3e-53 Score=420.71 Aligned_cols=225 Identities=26% Similarity=0.365 Sum_probs=176.5
Q ss_pred CcEEEEccCCcccccccCCccccc-chhhhh------hcccccccccccCCChHHHHHHHHHHHHHHHhccceeeecCCC
Q psy10043 51 KHVVVYTGAGISTAAKIPDYRSNF-TIYRLK------KINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAG 123 (504)
Q Consensus 51 ~~ivv~TGAGiS~~SGiPdfR~~~-g~Wr~~------kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAG 123 (504)
|+|||||||||||+||||||||++ |+|++. .++++.+. ++|..+|+.+|.++..+.
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~-~~f~~~p~~~~~~~~~~~---------------- 63 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDI-SYFRKNPRPFYALAKELY---------------- 63 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCH-HHHHHChHHHHHHHHHHh----------------
Confidence 579999999999999999999999 999874 34556664 677788876664433211
Q ss_pred cccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCc
Q psy10043 124 ISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGN 203 (504)
Q Consensus 124 ISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~ 203 (504)
...++||.+|++|++|+++|++.+||||||||||+|||++.++|+|+|||
T Consensus 64 ------------------------------~~~a~Pn~~H~~la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~ 113 (235)
T cd01408 64 ------------------------------PGQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGS 113 (235)
T ss_pred ------------------------------cCcCCCCHHHHHHHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcC
Confidence 02468999999999999999999999999999999999988899999999
Q ss_pred cceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEcc
Q psy10043 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGS 282 (504)
Q Consensus 204 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGT 282 (504)
++..+|..|+..++. .. .........+|+| .|||.|||+||||||.+ +...+..+.+++++||++|||||
T Consensus 114 l~~~~C~~C~~~~~~--~~----~~~~~~~~~~p~C~~Cgg~lrP~Vv~FGE~l---p~~~~~~~~~~~~~aDlllvvGT 184 (235)
T cd01408 114 FATAHCIKCKHKYPG--DW----MREDIFNQEVPKCPRCGGLVKPDIVFFGESL---PSRFFSHMEEDKEEADLLIVIGT 184 (235)
T ss_pred CCccccccCCCcCCH--HH----HHHHHhCCCCccCCCCCCCccCcEEECCCCC---CHHHHHHHHHHHhcCCEEEEECC
Confidence 999999999975321 11 0011122347999 99999999999999985 23456778888999999999999
Q ss_pred cccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccccCCCC-
Q psy10043 283 SLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKD- 361 (504)
Q Consensus 283 SL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~t~~d- 361 (504)
||+|+| +..++..+. . ++++++||+++|+.+
T Consensus 185 Sl~V~p---a~~l~~~~~-~--------------------------------------------~~~~v~iN~~~~~~~~ 216 (235)
T cd01408 185 SLKVAP---FASLPSRVP-S--------------------------------------------EVPRVLINREPVGHLG 216 (235)
T ss_pred CCeecc---HHHHHHHHh-C--------------------------------------------CCcEEEEeCCCCCCCC
Confidence 999974 333322211 1 234566777777777
Q ss_pred -CcccEEEecCHHHHHHHH
Q psy10043 362 -DQATLKINGKCDVVFKQL 379 (504)
Q Consensus 362 -~~adl~i~g~cD~v~~~L 379 (504)
..+|++|+|+|+++|++|
T Consensus 217 ~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 217 KRPFDVALLGDCDDGVREL 235 (235)
T ss_pred CCCcCEEEeCCHHHHHHhC
Confidence 778999999999999875
No 8
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.1e-53 Score=411.58 Aligned_cols=202 Identities=53% Similarity=0.792 Sum_probs=168.0
Q ss_pred cceeeecCCCcccCCCCCCcCCCCccccccccCcc--ccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcC
Q psy10043 114 KHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKD--IGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSG 191 (504)
Q Consensus 114 k~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~--~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG 191 (504)
|++|++|||||||+||||||||++|+|++....+. .....+..++||.+|++|++|+++|++.++|||||||||++||
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~~~~~~~~~~~~~~~~~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG 80 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSG 80 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCCccccChHHHhhhhcCCCCHHHHHHHHHHHCCCCceEEecCccchHhHcC
Confidence 68999999999999999999999999998664211 1112345799999999999999999999999999999999999
Q ss_pred CCCCCccccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHH
Q psy10043 192 LPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKN 270 (504)
Q Consensus 192 ~~~~~viElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~ 270 (504)
++.++|+|+|||++..+|+.|+......... ........+|.| .|||.|||+||||||.+ +...++.|.++
T Consensus 81 ~~~~~vielHG~~~~~~C~~C~~~~~~~~~~-----~~~~~~~~~p~C~~Cgg~lrP~VV~FgE~l---p~~~~~~a~~~ 152 (206)
T cd01410 81 LPREKLSELHGNMFIEVCKSCGPEYVRDDVV-----ETRGDKETGRRCHACGGILKDTIVDFGERL---PPENWMGAAAA 152 (206)
T ss_pred cCcccEEEecCCcCcccCCCCCCccchHHHH-----HHhhcCCCCCcCCCCcCccCCcEEECCCCC---CHHHHHHHHHH
Confidence 9888999999999999999999653221110 011123468999 99999999999999985 34468899999
Q ss_pred HhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecC
Q psy10043 271 ADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKING 326 (504)
Q Consensus 271 ~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~ 326 (504)
+++||++|||||||+|+ |++.++..+..++.++++||++|++.|..++++|++
T Consensus 153 ~~~aDlllviGTSl~V~---pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~~ 205 (206)
T cd01410 153 ACRADLFLCLGTSLQVT---PAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHG 205 (206)
T ss_pred HhcCCEEEEECcCceeh---hHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEeC
Confidence 99999999999999997 455555556678899999999999999999988875
No 9
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.3e-52 Score=422.78 Aligned_cols=252 Identities=28% Similarity=0.372 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhcccee
Q psy10043 38 AKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVV 117 (504)
Q Consensus 38 ~~~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iV 117 (504)
..+++++++|++|++|||||||||||+||||||||++|+|++..+..+ ..|..++...|.++......
T Consensus 7 ~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------- 74 (285)
T PRK05333 7 AALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSPPITY----QAFMGSDAARRRYWARSMVG-------- 74 (285)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccCCcccH----HHHhcCchhhHHHHHHHHhh--------
Confidence 345589999999999999999999999999999999999998766433 33444444444333221110
Q ss_pred eecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCc
Q psy10043 118 VYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVL 197 (504)
Q Consensus 118 V~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~v 197 (504)
+..+..++||.+|++|++|+++|++++||||||||||+|||. ++|
T Consensus 75 ---------------------------------~~~~~~~~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~V 119 (285)
T PRK05333 75 ---------------------------------WPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGS--RDV 119 (285)
T ss_pred ---------------------------------chhcccCCCCHHHHHHHHHHHcCCcccEEecccchhHHHcCC--CCE
Confidence 011235789999999999999999999999999999999995 579
Q ss_pred cccCCccceeeccCCCCCcccccccchhh---------------------hhhhhhccCCCCC-CCCCCccccEEEecCC
Q psy10043 198 SEVHGNMSVEVCAHCDPVKYYWRVFDVTE---------------------HTARYAHQTARKC-SCGEPLLDTIIHFGEK 255 (504)
Q Consensus 198 iElHG~l~~~~C~~C~~~~~~~~~~~~~~---------------------~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~ 255 (504)
+|+|||++..+|+.|+.........+... +........+|+| .|||.|||+||||||.
T Consensus 120 iElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP~C~~Cgg~lrP~Vv~FgE~ 199 (285)
T PRK05333 120 IELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPDGDADLEWAAFDHFRVPACPACGGILKPDVVFFGEN 199 (285)
T ss_pred EeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhcccCCCccccccccccccCCCCCCCCCCCcccCCEEEcCCC
Confidence 99999999999999996532110000000 0000112347999 9999999999999998
Q ss_pred CCCCChhhHHHHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccc
Q psy10043 256 GVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYG 335 (504)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~ 335 (504)
+ +...|..+.+++++||++|||||||.|.|++++... +..
T Consensus 200 l---p~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~---a~~---------------------------------- 239 (285)
T PRK05333 200 V---PRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVW---AAQ---------------------------------- 239 (285)
T ss_pred C---CHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHH---HHH----------------------------------
Confidence 5 345789999999999999999999999876654321 111
Q ss_pred cccCCCCCCCCCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcCCC
Q psy10043 336 WLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNLD 386 (504)
Q Consensus 336 ~~~~~~~~~~~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg~~ 386 (504)
++.++++||+++|+.+..+++.|.|+|+++++.|++.||+.
T Consensus 240 ----------~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 240 ----------QGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred ----------CCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 23455777888888888889999999999999999999975
No 10
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=2.9e-52 Score=407.95 Aligned_cols=221 Identities=31% Similarity=0.409 Sum_probs=186.1
Q ss_pred HHhCCcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhccceeeecCCCccc
Q psy10043 47 IQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGIST 126 (504)
Q Consensus 47 l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt 126 (504)
|++|++|||+||||||++|||||||+++|+|+++.++.+.+. ..|..+|+.+|.++..+...
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~~~~~~~~~-~~f~~~p~~~w~~~~~~~~~----------------- 62 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASI-DYFYRNPEEFWRFYKEIILG----------------- 62 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCCCCHHHhccH-HHHhHCHHHHHHHHHHHhcc-----------------
Confidence 357899999999999999999999999999999988888875 77889999999877654321
Q ss_pred CCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccce
Q psy10043 127 AAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSV 206 (504)
Q Consensus 127 ~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~ 206 (504)
+..++||.+|++|++|+++|++.+||||||||||+|||. ++|+|+|||++.
T Consensus 63 ---------------------------~~~a~Pn~~H~~La~L~~~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~ 113 (222)
T cd01413 63 ---------------------------LLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQT 113 (222)
T ss_pred ---------------------------cCCCCCCHHHHHHHHHHhcCCCeEEEEeccchhhHHcCC--CcEEEccCCcCc
Confidence 124689999999999999999999999999999999995 579999999999
Q ss_pred eeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEccccc
Q psy10043 207 EVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLK 285 (504)
Q Consensus 207 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGTSL~ 285 (504)
.+|+.|+...++... . ......+|.| .|||.|||+||||||.+ +...++.|.+++.+||++|||||||+
T Consensus 114 ~~C~~C~~~~~~~~~------~-~~~~~~~p~C~~Cgg~lrP~Vv~fgE~l---p~~~~~~a~~~~~~~Dl~lvvGTSl~ 183 (222)
T cd01413 114 AYCVNCGSKYDLEEV------K-YAKKHEVPRCPKCGGIIRPDVVLFGEPL---PQALLREAIEAAKEADLFIVLGSSLV 183 (222)
T ss_pred ceECCCCCCcchhHH------H-HhccCCCCcCCCCCCccCCCEEECCCCC---CHHHHHHHHHHHhcCCEEEEEccCCE
Confidence 999999975332211 0 1112458999 99999999999999985 34568899999999999999999999
Q ss_pred ccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCC
Q psy10043 286 VLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGK 327 (504)
Q Consensus 286 V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~ 327 (504)
|+| +..++..+..++.++++||+++++.+..++++|+++
T Consensus 184 V~p---~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 184 VYP---ANLLPLIAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred ecc---HhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 975 444555566788999999999999999999988764
No 11
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.4e-51 Score=406.23 Aligned_cols=238 Identities=31% Similarity=0.424 Sum_probs=196.1
Q ss_pred HHHHHHHHHHhCCcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhccceee
Q psy10043 39 KCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVV 118 (504)
Q Consensus 39 ~~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV 118 (504)
++++++++|++|++|||+||||||++|||||||+.+|+|+++.++.+.+. ..|..+|+.+|.++..+...
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~~~~~~~~~-~~~~~~p~~~w~f~~~~~~~--------- 71 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASP-EGFARDPELVWKFYNERRRQ--------- 71 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCCCHHHhccH-HHHhhCHHHHHHHHHHHHHH---------
Confidence 46789999999999999999999999999999999999999888888775 77889999999877654321
Q ss_pred ecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCcc
Q psy10043 119 YTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198 (504)
Q Consensus 119 ~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~vi 198 (504)
+..++||++|++|++|++.|++++||||||||||++||. ++|+
T Consensus 72 -----------------------------------~~~~~Pn~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~ 114 (242)
T PRK00481 72 -----------------------------------LLDAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAGS--KNVI 114 (242)
T ss_pred -----------------------------------hccCCCCHHHHHHHHHHhcCCCeEEEEeccchhHHHcCC--Ccee
Confidence 124689999999999999999999999999999999996 5799
Q ss_pred ccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCee
Q psy10043 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLI 277 (504)
Q Consensus 199 ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDll 277 (504)
|+||+++..+|+.|+..+... .. . ....|.| .|||.|||+||||||.+ +...+..+.+++++||++
T Consensus 115 elHG~~~~~~C~~C~~~~~~~--~~-------~-~~~~p~C~~Cgg~lrP~Vv~fge~~---~~~~~~~a~~~~~~~dl~ 181 (242)
T PRK00481 115 ELHGSLLRARCTKCGQTYDLD--EY-------L-KPEPPRCPKCGGILRPDVVLFGEML---PELAIDEAYEALEEADLF 181 (242)
T ss_pred eccCCcCceeeCCCCCCcChh--hh-------c-cCCCCCCCCCCCccCCCeEECCCCC---CHHHHHHHHHHHhcCCEE
Confidence 999999999999998643211 10 1 1247889 99999999999999985 345688999999999999
Q ss_pred EEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEecccc
Q psy10043 278 LCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQW 357 (504)
Q Consensus 278 LVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~ 357 (504)
|||||||+|+| +..++..+..+ ++++++||+++
T Consensus 182 lviGTsl~V~p---~~~l~~~~~~~--------------------------------------------~~~~i~iN~~~ 214 (242)
T PRK00481 182 IVIGTSLVVYP---AAGLPYEAREH--------------------------------------------GAKTVEINLEP 214 (242)
T ss_pred EEECCCceEcC---HhHHHHHHHHC--------------------------------------------CCeEEEECCCC
Confidence 99999999964 33333222223 33456666666
Q ss_pred CCCCCcccEEEecCHHHHHHHHHHHc
Q psy10043 358 TPKDDQATLKINGKCDVVFKQLMAHL 383 (504)
Q Consensus 358 t~~d~~adl~i~g~cD~v~~~L~~~L 383 (504)
++.+..+++.|.|++++++++|+++|
T Consensus 215 ~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 215 TPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred CCCCCccCEEEECCHHHHHHHHHHHh
Confidence 66677788999999999999999987
No 12
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.4e-51 Score=407.53 Aligned_cols=228 Identities=25% Similarity=0.357 Sum_probs=181.6
Q ss_pred HhCCcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhccceeeecCCCcccC
Q psy10043 48 QNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127 (504)
Q Consensus 48 ~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt~ 127 (504)
++|++||||||||||++||||||||++|+|++++++++.+. +.|..+|+.+|+++..+...+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~~~~~~~~~-~~f~~~p~~~~~f~~~~~~~~----------------- 63 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATP-DAFLRNPALVQRFYNERRRAL----------------- 63 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCCChhhcCCH-HHHHhCHHHHHHHHHHHHHHh-----------------
Confidence 35899999999999999999999999999999999888885 889999999998876543211
Q ss_pred CCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhc--CCceeEEeecchhhhhhcCCCCCCccccCCccc
Q psy10043 128 AKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRH--GFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMS 205 (504)
Q Consensus 128 SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~--G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~ 205 (504)
.+..++||.+|++|++|++. |++.+||||||||||++||. ++|+|+||+++
T Consensus 64 -------------------------~~~~~~Pn~~H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~ 116 (242)
T PTZ00408 64 -------------------------LSSSVKPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELL 116 (242)
T ss_pred -------------------------ccCCCCCCHHHHHHHHHHHhhcCCcEEEEeecccchhhHcCC--CcEEEecCccc
Confidence 01346899999999999986 88999999999999999996 47999999999
Q ss_pred eeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCC--CCccccEEEecC-CCCCCChhhHHHHHHHHhcCCeeEEEc
Q psy10043 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCG--EPLLDTIIHFGE-KGVLLWPLNWDGANKNADRADLILCVG 281 (504)
Q Consensus 206 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cg--g~LrP~IV~FGE-~~~~~~~~~~~~a~~~~~~aDllLVvG 281 (504)
..+|+.|+...++. +. . ....|.| .|| |.|||+|||||| .. + ++...+++.+||++||||
T Consensus 117 ~~~C~~C~~~~~~~------~~--~--~~~~p~C~~Cg~~g~lrP~vV~FGE~~~---~---~~~~~~~~~~~DlllviG 180 (242)
T PTZ00408 117 KVRCTATGHVFDWT------ED--V--VHGSSRCKCCGCVGTLRPHIVWFGEMPL---Y---MDEIESVMSKTDLFVAVG 180 (242)
T ss_pred eEEECCCCcccCch------hh--h--hcCCCccccCCCCCCCCCCEEEcCCCCC---c---HHHHHHHHHhCCEEEEEc
Confidence 99999999753321 10 1 1236999 998 999999999999 42 2 223445588999999999
Q ss_pred ccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccccCCCC
Q psy10043 282 SSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKD 361 (504)
Q Consensus 282 TSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~t~~d 361 (504)
|||+|+| ++.++..+..++ +++++||+++|+.+
T Consensus 181 TSl~V~p---a~~l~~~a~~~g--------------------------------------------~~vi~IN~~~~~~~ 213 (242)
T PTZ00408 181 TSGNVYP---AAGFVGRAQFYG--------------------------------------------ATTLELNLEEGTNY 213 (242)
T ss_pred cCCcccc---HHHHHHHHHHcC--------------------------------------------CeEEEECCCCCCCC
Confidence 9999974 443333333344 44566666666666
Q ss_pred CcccEEEecCHHHHHHHHHHHc
Q psy10043 362 DQATLKINGKCDVVFKQLMAHL 383 (504)
Q Consensus 362 ~~adl~i~g~cD~v~~~L~~~L 383 (504)
..+|+.|.|++.+++++|++++
T Consensus 214 ~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 214 SQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred ccCCEEEECCHHHHHHHHHHHH
Confidence 6788999999999999998876
No 13
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=1.5e-49 Score=388.94 Aligned_cols=223 Identities=27% Similarity=0.374 Sum_probs=182.2
Q ss_pred CcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhccceeeecCCCcccCCCC
Q psy10043 51 KHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKI 130 (504)
Q Consensus 51 ~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt~SGI 130 (504)
++|||+||||||++|||||||+++|+|+++.++++.+. ..|..+|+.+|.++.+....
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~~~~~~~~~-~~f~~~p~~~w~f~~~~~~~--------------------- 58 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATP-EAFARDPELVWEFYNWRRRK--------------------- 58 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCCChhhcCCH-HHHHHCHHHHHHHHHHHHHH---------------------
Confidence 57999999999999999999999999999988888886 67788999888776654321
Q ss_pred CCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccceeecc
Q psy10043 131 PDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCA 210 (504)
Q Consensus 131 PDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~C~ 210 (504)
+..++||.+|++|++|++++++++||||||||||++||+ ++|+|+||++...+|.
T Consensus 59 -----------------------~~~~~Pn~~H~~L~~L~~~~~~~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~ 113 (224)
T cd01412 59 -----------------------ALRAQPNPAHLALAELERRLPNVLLITQNVDGLHERAGS--RNVIELHGSLFRVRCS 113 (224)
T ss_pred -----------------------ccccCCCHHHHHHHHHHhcCCCeEEEEccchHhhHHhCC--CceEeeCCCcCccccC
Confidence 124689999999999999999999999999999999998 6899999999999999
Q ss_pred CCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEccccccccc
Q psy10043 211 HCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRK 289 (504)
Q Consensus 211 ~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGTSL~V~~~ 289 (504)
.|+...... .......+|.| .|||.|||+||||||.+ |..|+.+.++++++|++|||||||+|.|+
T Consensus 114 ~C~~~~~~~---------~~~~~~~~p~C~~Cgg~lrp~Vv~fge~~----p~~~~~~~~~~~~~dl~lvlGTsl~v~p~ 180 (224)
T cd01412 114 SCGYVGENN---------EEIPEEELPRCPKCGGLLRPGVVWFGESL----PLALLEAVEALAKADLFLVIGTSGVVYPA 180 (224)
T ss_pred CCCCCCCcc---------hhhhccCCCCCCCCCCccCCceEECCCCC----HHHHHHHHHHHHcCCEEEEECcCccchhH
Confidence 999753211 01223468999 99999999999999985 22788999999999999999999999743
Q ss_pred ccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccccCCCCCcccEEEe
Q psy10043 290 YGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 369 (504)
Q Consensus 290 ~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~t~~d~~adl~i~ 369 (504)
..++..+..+ ++++++||+++++.+..+++.|.
T Consensus 181 ---~~l~~~~~~~--------------------------------------------~~~~i~iN~~~~~~~~~~~~~i~ 213 (224)
T cd01412 181 ---AGLPEEAKER--------------------------------------------GARVIEINPEPTPLSPIADFAFR 213 (224)
T ss_pred ---HHHHHHHHHC--------------------------------------------CCeEEEECCCCCCCCCcCCEEEE
Confidence 3332222222 34456667777777777899999
Q ss_pred cCHHHHHHHHH
Q psy10043 370 GKCDVVFKQLM 380 (504)
Q Consensus 370 g~cD~v~~~L~ 380 (504)
|++++++++|+
T Consensus 214 g~~~~~l~~l~ 224 (224)
T cd01412 214 GKAGEVLPALL 224 (224)
T ss_pred CCHHHHHHHhC
Confidence 99999999873
No 14
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=9.6e-50 Score=390.91 Aligned_cols=216 Identities=30% Similarity=0.409 Sum_probs=180.3
Q ss_pred HHHHHHhCCcEEEEccCCcccccccCCcccccchhhh---hhcccccccccccCCChHHHHHHHHHHHHHHHhccceeee
Q psy10043 43 LAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRL---KKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVY 119 (504)
Q Consensus 43 l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~---~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~ 119 (504)
|+++|++|++|||+||||||++|||||||+++|+|+. ..++++.+. +.|..+|+.+|.++.+..
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~------------ 67 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSH-DFLEREPEKFYQFVKENL------------ 67 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecH-HHHHHCHHHHHHHHHHHh------------
Confidence 4678899999999999999999999999999999988 467777774 778888988887664421
Q ss_pred cCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccc
Q psy10043 120 TGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSE 199 (504)
Q Consensus 120 TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viE 199 (504)
.+.+++||.+|++|++|++.| +.+||||||||||++||. ++|+|
T Consensus 68 ---------------------------------~~~~~~Pn~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~e 111 (225)
T cd01411 68 ---------------------------------YFPDAKPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAGS--KNVVE 111 (225)
T ss_pred ---------------------------------hCCCCCCCHHHHHHHHHHHcC-CcEEEEeccchhhhhcCC--CcEEE
Confidence 012468999999999999988 899999999999999995 57999
Q ss_pred cCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeE
Q psy10043 200 VHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLIL 278 (504)
Q Consensus 200 lHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllL 278 (504)
+||+++..+|+.|+....+. + ...+|+| .|||.|||+||||||.+ +...++.+.+++++||++|
T Consensus 112 lHG~~~~~~C~~C~~~~~~~------~------~~~~p~C~~Cgg~lrP~vv~fge~~---~~~~~~~~~~~~~~~Dlll 176 (225)
T cd01411 112 FHGSLYRIYCTVCGKTVDWE------E------YLKSPYHAKCGGVIRPDIVLYEEML---NESVIEEAIQAIEKADLLV 176 (225)
T ss_pred eCCCcCeeEeCCCCCccchh------h------cCCCCCCCCCCCEeCCCEEEcCCCC---CHHHHHHHHHHHhcCCEEE
Confidence 99999999999998643221 1 1237999 99999999999999985 3456889999999999999
Q ss_pred EEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecC
Q psy10043 279 CVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKING 326 (504)
Q Consensus 279 VvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~ 326 (504)
||||||.|+| +.+++... .++.++++||+++++.+..+++++++
T Consensus 177 viGTSl~v~p---~~~l~~~~-~~~~~~i~iN~~~~~~~~~~~~~~~~ 220 (225)
T cd01411 177 IVGTSFVVYP---FAGLIDYR-QAGANLIAINKEPTQLDSPATLVIKD 220 (225)
T ss_pred EECcCCeehh---HHHHHHHH-hCCCeEEEECCCCCCCCcchhehhcc
Confidence 9999999975 44444333 35889999999999999999988876
No 15
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=1.8e-49 Score=387.07 Aligned_cols=215 Identities=33% Similarity=0.448 Sum_probs=179.1
Q ss_pred CcEEEEccCCcccccccCCcccccchhhhhhccccc-ccccccCCChHHHHHHHHHHHHHHHhccceeeecCCCcccCCC
Q psy10043 51 KHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVK-SRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAK 129 (504)
Q Consensus 51 ~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~la-S~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt~SG 129 (504)
|+|||+||||||++|||||||+++|+|+++.+..+. +. ..|..+|+.+|.++..+..
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~--------------------- 58 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSP-EAFRRDPELFWGFYRERRY--------------------- 58 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCChhhccCCH-HHHHHCHHHHHHHHHHhhh---------------------
Confidence 589999999999999999999999999998887776 54 6678888888877765432
Q ss_pred CCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccceeec
Q psy10043 130 IPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVC 209 (504)
Q Consensus 130 IPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~C 209 (504)
+..++||.+|++|++|+++|++.+||||||||||++||++ +|+|+||+++..+|
T Consensus 59 ------------------------~~~~~Pn~~H~~L~~L~~~~~~~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C 112 (218)
T cd01407 59 ------------------------PLNAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSP--KVIELHGSLFRVRC 112 (218)
T ss_pred ------------------------hccCCCCHHHHHHHHHHhcCCCeeEEEeccchhHHHcCCC--CEEECcCCcCccee
Confidence 1246899999999999999999999999999999999986 79999999999999
Q ss_pred cCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEcccccccc
Q psy10043 210 AHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLR 288 (504)
Q Consensus 210 ~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGTSL~V~~ 288 (504)
+.|++........ .......+|.| .||+.|||+||||||.+ +.. |+++.+++.+||++|||||||+|+|
T Consensus 113 ~~C~~~~~~~~~~------~~~~~~~~p~C~~Cg~~lrP~Vv~fgE~~---p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p 182 (218)
T cd01407 113 TKCGKEYPRDELQ------ADIDREEVPRCPKCGGLLRPDVVFFGESL---PEE-LDEAAEALAKADLLLVIGTSLQVYP 182 (218)
T ss_pred CCCcCCCcHHHHh------HhhccCCCCcCCCCCCccCCCeEECCCCC---cHH-HHHHHHHHhcCCEEEEeCCCccccc
Confidence 9999753221100 11234568999 99999999999999985 233 9999999999999999999999975
Q ss_pred cccccccCCCCccCCCeEEEEcCCCCCCCcccceeecC
Q psy10043 289 KYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKING 326 (504)
Q Consensus 289 ~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~ 326 (504)
+ ..++..+..++.++++||+++++.+..++++++|
T Consensus 183 ~---~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~~ 217 (218)
T cd01407 183 A---AGLPLYAPERGAPVVIINLEPTPADRKADLVILG 217 (218)
T ss_pred H---HHHHHHHHHCCCeEEEECCCCCCCCccceEEEeC
Confidence 4 4444445557889999999999999888887765
No 16
>KOG2682|consensus
Probab=100.00 E-value=4.3e-49 Score=377.15 Aligned_cols=230 Identities=26% Similarity=0.372 Sum_probs=186.8
Q ss_pred HHHHHHHHHh--ccceeeecCCCcccCCCCCCcCCC-CccccccccCcccc-----c-----------------cccccC
Q psy10043 103 CKQLAEAIQN--AKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGKDIG-----N-----------------HDLSLA 157 (504)
Q Consensus 103 i~~LaelI~~--Ak~iVV~TGAGISt~SGIPDFRg~-~Glw~~~~~~~~~~-----~-----------------~~~~~a 157 (504)
++.++.+++. .++++++.||||||++||||||+| .|+|++++++..+. . -...+.
T Consensus 24 lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyPgnf 103 (314)
T KOG2682|consen 24 LEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYPGNF 103 (314)
T ss_pred HHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCCCCc
Confidence 4556666664 578999999999999999999999 59999998764321 0 112578
Q ss_pred CCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccceeecc-CCCCCcccccccchhhhhhhhhccCC
Q psy10043 158 EPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCA-HCDPVKYYWRVFDVTEHTARYAHQTA 236 (504)
Q Consensus 158 ~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~C~-~C~~~~~~~~~~~~~~~~~~~~~~~~ 236 (504)
+||.+||+|+.|+++|.+.++||||||+|++.||++.+.++|.||++...+|+ .|++.++. ....+......+
T Consensus 104 kPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~------e~~ka~i~~~~v 177 (314)
T KOG2682|consen 104 KPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPL------EWMKAKIMSEVV 177 (314)
T ss_pred CchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCH------HHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999 59975331 111222334568
Q ss_pred CCC-CCCCCccccEEEecCCCCCCChhhH-HHHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCC
Q psy10043 237 RKC-SCGEPLLDTIIHFGEKGVLLWPLNW-DGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWT 314 (504)
Q Consensus 237 P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~-~~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t 314 (504)
|+| .|+|++||+||||||++ |..+ +....+...+||+|||||||+|+ |++++....+.+.|++ +||+++.
T Consensus 178 pkC~vC~~lVKP~IVFfGE~L----P~rF~e~~~~D~~~~dl~lV~GTSL~V~---PFAsLpe~vp~~v~Rl-LiNre~~ 249 (314)
T KOG2682|consen 178 PKCEVCQGLVKPDIVFFGESL----PARFFECMQSDFLKVDLLLVMGTSLQVQ---PFASLPEKVPLSVPRL-LINREKA 249 (314)
T ss_pred CCCchhhccccccEEEecCCc----cHHHHHHHhhcccccceEEEeccceeee---ecccchhhhhhcCcee-Eeccccc
Confidence 999 99999999999999995 3444 45667888999999999999995 7888888888888886 8999875
Q ss_pred CCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcCCC
Q psy10043 315 PKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNLD 386 (504)
Q Consensus 315 ~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg~~ 386 (504)
.-.. +. ....|+.++|+||..+++|+++|||+
T Consensus 250 Gp~~--------------------------------------~~--~r~rDv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 250 GPFL--------------------------------------GM--IRYRDVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred Cccc--------------------------------------cC--cccccchhhccHHHHHHHHHHHhCcH
Confidence 4100 00 11346899999999999999999996
No 17
>KOG2684|consensus
Probab=100.00 E-value=2.7e-48 Score=397.77 Aligned_cols=259 Identities=25% Similarity=0.364 Sum_probs=193.3
Q ss_pred HHHHHHHHHHhCCcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhccceee
Q psy10043 39 KCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVV 118 (504)
Q Consensus 39 ~~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV 118 (504)
.+..+..++++||+|||+||||||+++|||||||.+|+|++.+...+.++ .+++|.+-
T Consensus 77 t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp-~~mFd~~~--------------------- 134 (412)
T KOG2684|consen 77 TLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSP-QAMFDISY--------------------- 134 (412)
T ss_pred cHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCH-HHhccchh---------------------
Confidence 35678888999999999999999999999999999999999887666665 44444432
Q ss_pred ecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCcc
Q psy10043 119 YTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198 (504)
Q Consensus 119 ~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~vi 198 (504)
||...-.|.++.. ........|++.|.||+.|+++|++.++|||||||||++||+..++++
T Consensus 135 --------------fr~d~~~F~~~a~-----~l~~~~~~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lV 195 (412)
T KOG2684|consen 135 --------------FRDDPSIFYRFAR-----ELKPPSNNPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLV 195 (412)
T ss_pred --------------hhcccHHHHHHHH-----HhcCCccCCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceE
Confidence 2222111111110 001123349999999999999999999999999999999999999999
Q ss_pred ccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCC------------------CccccEEEecCCCCCC
Q psy10043 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGE------------------PLLDTIIHFGEKGVLL 259 (504)
Q Consensus 199 ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg------------------~LrP~IV~FGE~~~~~ 259 (504)
+||||+.++.|+.|+...++.+.+. ......+|.| .|.+ .|||+||||||.+|
T Consensus 196 q~HGSf~t~sCt~C~~k~~~~~~~~------~~~~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP-- 267 (412)
T KOG2684|consen 196 QCHGSFKTASCTKCGYKKPFEELRE------DIRNQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLP-- 267 (412)
T ss_pred EeccccceeeecccccccChHHHHH------HHhcCcCccCcccccccccccCccccccccCccccccceEEecCCCC--
Confidence 9999999999999997765544433 2345678999 9965 89999999999963
Q ss_pred ChhhHHHHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccC
Q psy10043 260 WPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWG 339 (504)
Q Consensus 260 ~~~~~~~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~ 339 (504)
+..+.........+||+|||||||+|.| +..++....+..|. |+||+++.
T Consensus 268 -~~~~~~~~~d~d~~DllIviGTSLKV~p---V~~iv~~~~~~vpq-IliNr~~v------------------------- 317 (412)
T KOG2684|consen 268 -DSFHIGVGADLDECDLLIVIGTSLKVRP---VAEIVKSFPAKVPQ-ILINRDPV------------------------- 317 (412)
T ss_pred -hHHHhhhhccccccceEEEeCCcccccc---HHHHHhhhcccCcE-EEecCccc-------------------------
Confidence 3334445556678899999999999964 44444444444444 46665532
Q ss_pred CCCCCCCCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcCCCCCCCcCCCCc
Q psy10043 340 LDRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNLDIPAYDKRRDP 396 (504)
Q Consensus 340 ~~~~~~~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg~~ip~~~~~~d~ 396 (504)
+ ...+|+.+.|+||+++..|++.+||..|.-+-....
T Consensus 318 -------------------~-h~efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~~l~ 354 (412)
T KOG2684|consen 318 -------------------P-HAEFDVELLGDCDDVIRLLCQKCGWLKPLLSLNDLK 354 (412)
T ss_pred -------------------c-ccccChhhccchHHHHHHHHhhccccchHhhhhhhh
Confidence 2 234678889999999999999999998765543333
No 18
>KOG2683|consensus
Probab=100.00 E-value=3.3e-48 Score=370.79 Aligned_cols=238 Identities=28% Similarity=0.415 Sum_probs=190.2
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhccceeeecCCCcccCCCCCCcCCCC-cccccccc--C------------------c
Q psy10043 89 NEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTK-GIWTLLQQ--G------------------K 147 (504)
Q Consensus 89 l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~-Glw~~~~~--~------------------~ 147 (504)
.....+.++...+.+.++..++..++++.|+|||||||+||||||||++ |+|.+..- - .
T Consensus 21 ~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~hqdf~rSs~~RqRYWaRn 100 (305)
T KOG2683|consen 21 RKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQHQDFVRSSRCRQRYWARN 100 (305)
T ss_pred ccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchHHHHhhhhHHHHHHHHHh
Confidence 3566677778889999999999999999999999999999999999998 99985321 0 1
Q ss_pred cccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccceeeccCCCCCcc---cccc---
Q psy10043 148 DIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKY---YWRV--- 221 (504)
Q Consensus 148 ~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~C~~C~~~~~---~~~~--- 221 (504)
...|..|..++||++|+||+.|++.|+++++||||||+||.|||+. .+.|+||+.+.+.|++|+...+ |...
T Consensus 101 f~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~--~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~ 178 (305)
T KOG2683|consen 101 FVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSR--MVTELHGSAYQVKCLSCGYIEPRQTFQDRLKY 178 (305)
T ss_pred hcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhcccc--ceeeeccceEEEEecccCcccchHHHHHHHHh
Confidence 2357789999999999999999999999999999999999999974 5999999999999999996521 1110
Q ss_pred ----c--------------chhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEcc
Q psy10043 222 ----F--------------DVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGS 282 (504)
Q Consensus 222 ----~--------------~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGT 282 (504)
| |+...........+|.| +|||.|||+|+||||+. +....+.+.+.+.+||-+||+||
T Consensus 179 ~NP~fke~~~~~~~~~pDgDv~lpl~~e~gF~IPeC~~CgG~lKpdV~fFGdnv---n~dkv~~~~~~v~e~dg~LvlGs 255 (305)
T KOG2683|consen 179 LNPGFKEAIVSPGHQRPDGDVELPLEFEEGFQIPECEKCGGLLKPDVTFFGDNV---NKDKVTFCMEKVKECDGFLVLGS 255 (305)
T ss_pred cCcchhhhccCccccCCCCCeecchhhhhcccCCcccccCCccCCceEEecCCC---ChHHHHHHHHHHhccCceEEech
Confidence 1 00001111233568999 99999999999999995 35677788999999999999999
Q ss_pred cccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCCCceEEeccccCCCCC
Q psy10043 283 SLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDD 362 (504)
Q Consensus 283 SL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~~~l~ivN~q~t~~d~ 362 (504)
||.|+++|++... +... +..++|||..+|+.|+
T Consensus 256 SL~v~Sg~r~i~~---a~~~--------------------------------------------k~pi~IvNIGpTRaD~ 288 (305)
T KOG2683|consen 256 SLMVLSGFRFIRH---AHEK--------------------------------------------KKPIAIVNIGPTRADD 288 (305)
T ss_pred hHHHHHHHHHHHH---HHhh--------------------------------------------cCcEEEEecCCcchhh
Confidence 9999998876532 2111 2234777777777888
Q ss_pred cccEEEecCHHHHHHH
Q psy10043 363 QATLKINGKCDVVFKQ 378 (504)
Q Consensus 363 ~adl~i~g~cD~v~~~ 378 (504)
.|+++|..+|.||+.+
T Consensus 289 ~a~lKl~~r~gdvl~~ 304 (305)
T KOG2683|consen 289 MATLKLNYRIGEVLKE 304 (305)
T ss_pred eeeeeecchHhhhhhc
Confidence 8888888888888764
No 19
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=4.7e-45 Score=355.13 Aligned_cols=215 Identities=33% Similarity=0.438 Sum_probs=178.4
Q ss_pred CcEEEEccCCcccccccCCccccc-chhhhhhccccc-ccccccCCChHHHHHHHHHHHHHHHhccceeeecCCCcccCC
Q psy10043 51 KHVVVYTGAGISTAAKIPDYRSNF-TIYRLKKINKVK-SRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAA 128 (504)
Q Consensus 51 ~~ivv~TGAGiS~~SGiPdfR~~~-g~Wr~~kpe~la-S~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt~S 128 (504)
+++|+|||||||++|||||||+.+ |+|+........ + ...+.++|+.+|.++.++..
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------- 59 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFS-PEAFRRDPELFWLFYKERRY-------------------- 59 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCC-HHHHHHCHHHHHHHHHHHHh--------------------
Confidence 579999999999999999999999 999988766554 4 36778888888877766543
Q ss_pred CCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccceee
Q psy10043 129 KIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEV 208 (504)
Q Consensus 129 GIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~ 208 (504)
....++||.+|++|++|+++|++.++||||||+||++||++.++|+++||++...+
T Consensus 60 ------------------------~~~~~~P~~~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~ 115 (222)
T cd00296 60 ------------------------TPLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVR 115 (222)
T ss_pred ------------------------hhCcCCCCHHHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccE
Confidence 12357899999999999999999999999999999999999889999999999999
Q ss_pred ccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEccccccc
Q psy10043 209 CAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVL 287 (504)
Q Consensus 209 C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGTSL~V~ 287 (504)
|..|+....+... ......|.| .|+|.|||+||+|||.++ ...|..+.+++.+||++|||||||+|.
T Consensus 116 C~~C~~~~~~~~~---------~~~~~~p~C~~C~~~l~p~v~~fge~~~---~~~~~~~~~~~~~~d~llviGtSl~v~ 183 (222)
T cd00296 116 CTSCGKEYPRDEV---------LEREKPPRCPKCGGLLRPDVVDFGEALP---KEWFDRALEALLEADLVLVIGTSLTVY 183 (222)
T ss_pred ECCCCCCcchhhh---------hhccCCCCCCCCCCcccCceEECCCCCC---HHHHHHHHHHHhcCCEEEEECCCcccc
Confidence 9999965332111 112468999 999999999999999863 225889999999999999999999996
Q ss_pred ccccccccCCCCccCCCeEEEEcCCCCCCC--cccceeec
Q psy10043 288 RKYGWLWGLDRPKKERPKLCIVNLQWTPKD--DQATLKIN 325 (504)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~liiIN~~~t~~d--~~a~~~i~ 325 (504)
|+..++..+..++.++++||++++..+ ..+++.+.
T Consensus 184 ---~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~ 220 (222)
T cd00296 184 ---PAARLLLRAPERGAPVVIINREPTPADALKKADLVIL 220 (222)
T ss_pred ---CHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEe
Confidence 455555556667889999999999988 56666554
No 20
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=2e-45 Score=347.60 Aligned_cols=175 Identities=32% Similarity=0.479 Sum_probs=133.7
Q ss_pred cCCcccccccCCccc-ccchhhhhhcccccccccccCCChHHHHH-HHHHHHHHHHhccceeeecCCCcccCCCCCCcCC
Q psy10043 58 GAGISTAAKIPDYRS-NFTIYRLKKINKVKSRNEELEDKPEILAA-KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRG 135 (504)
Q Consensus 58 GAGiS~~SGiPdfR~-~~g~Wr~~kpe~laS~l~efeDdPe~l~e-ki~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg 135 (504)
|||||++|||||||| ++|+|++.++..+.+. ..++++|...|. ++..+.+..
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~~~~l~~~-~~~~~~~~~~~~~f~~~~~~~~------------------------- 54 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYKPEELATP-EAFFSDPEFVWEKFYRFRRKVI------------------------- 54 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCHHHHHSSH-HHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred CCccchhhCCCccccCCCCcceeeeccccccc-cccccccchhhhHHHHHhhhhc-------------------------
Confidence 899999999999999 9999999888777664 667777777776 333333220
Q ss_pred CCccccccccCccccccccccCCCCHHHHHHHHHHhcCCceeEEeecchhhhhhcCCCCCCccccCCccceeeccCCCCC
Q psy10043 136 TKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPV 215 (504)
Q Consensus 136 ~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~~~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~C~~C~~~ 215 (504)
...++||.+|++|++|++.|++.+||||||||||++||++ +|+|+|||++..+|+.|+..
T Consensus 55 ------------------~~~a~Pn~~H~~La~L~~~g~~~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~ 114 (178)
T PF02146_consen 55 ------------------SKDAEPNPGHRALAELEKKGKLKRVITQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKE 114 (178)
T ss_dssp ------------------TCTS---HHHHHHHHHHHTTSEEEEEES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBE
T ss_pred ------------------cccCCCChhHHHHHHHHHhhhhccceecccchhhhcccch--hhHHHHhhhceeeecCCCcc
Confidence 0167999999999999999999999999999999999997 89999999999999999975
Q ss_pred cccccccchhhhhhhhhccCCCCC-CCCCCccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEcccccccc
Q psy10043 216 KYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLR 288 (504)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGTSL~V~~ 288 (504)
...... .........|+| .||+.|||+||||||.+ + ..+..|.+++++|||+|||||||+|+|
T Consensus 115 ~~~~~~------~~~~~~~~~~~C~~C~~~lrp~vv~fgE~~---~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 115 YDREDI------VDSIDEEEPPRCPKCGGLLRPDVVLFGESL---P-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp EEGHHH------HHHHHTTSSCBCTTTSCBEEEEE--BTSB----S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ccchhh------cccccccccccccccCccCCCCeeecCCCC---H-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 332111 112234567899 99999999999999995 2 578899999999999999999999964
No 21
>KOG1905|consensus
Probab=99.71 E-value=1.3e-17 Score=165.45 Aligned_cols=130 Identities=35% Similarity=0.431 Sum_probs=108.1
Q ss_pred CCCCchhHHHHHHHHHhhhhccccccccccCChHHHHHHHHHHHHHHHhCCcEEEEccCCcccccccCCcccccchhhhh
Q psy10043 1 MILDSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLK 80 (504)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~ 80 (504)
+|..++.++...+++..+..+.+++.+|.+|+|+.++.++++||+++++|+++||+|||||||+||||||||++|+|+..
T Consensus 6 ~l~~s~~~v~~~~~~s~~~~~~k~~~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~ 85 (353)
T KOG1905|consen 6 YLTVSSMSVNYAHGLSIRLEKGKQGRPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQ 85 (353)
T ss_pred hhhccchhhhhhcccchhhhcccccCccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hcccccccccccCCChHHHHHHHHHHHHHHHhccceeeecCCCcccCCCCC
Q psy10043 81 KINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIP 131 (504)
Q Consensus 81 kpe~laS~l~efeDdPe~l~eki~~LaelI~~Ak~iVV~TGAGISt~SGIP 131 (504)
...+-+...++-+..|......+-+|.+. .--+|+|.--=-|+-.-||||
T Consensus 86 ~kG~~~~~~df~~ArPt~THmai~~Lhr~-gll~~viSQNvDGLhlrsGlP 135 (353)
T KOG1905|consen 86 QKGKDKFGVDFSEARPTVTHMAIVALHRA-GLLKHVISQNVDGLHLRSGLP 135 (353)
T ss_pred hcCccccCCchhhcCCcchHHHHHHHHHc-chhhhhhhccccchhhccCCC
Confidence 65443444566677777666555444332 224677766667888888888
No 22
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.10 E-value=6.5e-11 Score=115.09 Aligned_cols=32 Identities=53% Similarity=0.824 Sum_probs=29.6
Q ss_pred CcEEEEccCCcccccccCCcccccchhhhhhc
Q psy10043 51 KHVVVYTGAGISTAAKIPDYRSNFTIYRLKKI 82 (504)
Q Consensus 51 ~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kp 82 (504)
|+||||||||||++||||||||++|+|++.++
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~~ 32 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPE 32 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCCc
Confidence 57999999999999999999999999988654
No 23
>KOG2684|consensus
Probab=99.09 E-value=4.7e-11 Score=124.06 Aligned_cols=70 Identities=27% Similarity=0.450 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhccceeeecCCCcccCCCCCCcCCCCccccccccC-----ccccccccccCCCCHHHHHHHHHHh
Q psy10043 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQG-----KDIGNHDLSLAEPTLTHMALYKLYR 171 (504)
Q Consensus 102 ki~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~-----~~~~~~~~~~a~Pn~~H~~La~L~~ 171 (504)
.+..+..++..+|||||+||||||+++|||||||.+|+|..++.. +.++...+..-.|...|.++..|..
T Consensus 77 t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~~ 151 (412)
T KOG2684|consen 77 TLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELKP 151 (412)
T ss_pred cHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhcC
Confidence 345667788999999999999999999999999999999988762 2234445566778888888888754
No 24
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=99.09 E-value=5.4e-11 Score=121.03 Aligned_cols=43 Identities=37% Similarity=0.643 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccceeeecCCCcccCCCCCCcCCCCcccccccc
Q psy10043 103 CKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQ 145 (504)
Q Consensus 103 i~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~ 145 (504)
+..+++++++++++|++|||||||+||||||||++|+|++.+.
T Consensus 9 l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~~~ 51 (285)
T PRK05333 9 LDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSPP 51 (285)
T ss_pred HHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccCCc
Confidence 3467888999999999999999999999999999999987653
No 25
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=99.08 E-value=5.1e-11 Score=120.34 Aligned_cols=67 Identities=27% Similarity=0.416 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhccceeeecCCCcccCCCCCCcCCC-CccccccccCccccccccccCCCCHHHHHHHHH
Q psy10043 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKL 169 (504)
Q Consensus 102 ki~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~-~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L 169 (504)
.+..+++++++++++|++|||||||+||||||||+ +|+|+++.... +.........|...+.+.+++
T Consensus 17 ~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~-~~t~~~f~~~p~~~~~~~~~~ 84 (271)
T PTZ00409 17 TLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKI-YGTIWGFWKYPEKIWEVIRDI 84 (271)
T ss_pred cHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHH-hccHHHHHHChHHHHHHHHHh
Confidence 45678899999999999999999999999999998 69999765321 112222344677777776553
No 26
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.07 E-value=4.3e-11 Score=120.31 Aligned_cols=38 Identities=39% Similarity=0.746 Sum_probs=35.2
Q ss_pred HHHHHHhccceeeecCCCcccCCCCCCcCCCCcccccc
Q psy10043 106 LAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLL 143 (504)
Q Consensus 106 LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~ 143 (504)
|++++++++++|++|||||||+||||||||++|+|++.
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~ 38 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRT 38 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCC
Confidence 35778899999999999999999999999999999984
No 27
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=99.00 E-value=2e-10 Score=114.50 Aligned_cols=65 Identities=32% Similarity=0.573 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccceeeecCCCcccCCCCCCcCCCCcccc-ccccCccccccccccCCCCHHHHHHHH
Q psy10043 103 CKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWT-LLQQGKDIGNHDLSLAEPTLTHMALYK 168 (504)
Q Consensus 103 i~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~-~~~~~~~~~~~~~~~a~Pn~~H~~La~ 168 (504)
+..+++++..+++|||+|||||||+|||||||+.+|+|. ++... ++...++....|.....+...
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~-~l~s~~~f~~~p~~~~~f~~~ 67 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPE-DLASPSGFRRDPELVWDFYSE 67 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHH-HHhCHHHHhhCHHHHHHHHHH
Confidence 356778889999999999999999999999999999999 44332 222333333366555544433
No 28
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=98.94 E-value=4.2e-10 Score=116.88 Aligned_cols=67 Identities=30% Similarity=0.404 Sum_probs=48.9
Q ss_pred HHHHHHHHHHh--ccceeeecCCCcccCCCCCCcCCC-CccccccccCc--c---ccccccccCCCCHHHHHHHH
Q psy10043 102 KCKQLAEAIQN--AKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGK--D---IGNHDLSLAEPTLTHMALYK 168 (504)
Q Consensus 102 ki~~LaelI~~--Ak~iVV~TGAGISt~SGIPDFRg~-~Glw~~~~~~~--~---~~~~~~~~a~Pn~~H~~La~ 168 (504)
.++.++++|+. +++|||+|||||||+||||||||+ +|+|+++.+.. . ++...+....|...+++.+.
T Consensus 16 ~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~ 90 (349)
T PTZ00410 16 TFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIARE 90 (349)
T ss_pred HHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHH
Confidence 45678888887 579999999999999999999999 59999875421 1 12223344567666666544
No 29
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=98.94 E-value=3.8e-10 Score=112.42 Aligned_cols=63 Identities=32% Similarity=0.499 Sum_probs=46.4
Q ss_pred HHHHHHHHhccceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHH
Q psy10043 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYK 168 (504)
Q Consensus 104 ~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~ 168 (504)
+.++++++++++||++||||||++||||||||++|+|++... .+....+....|...+.+.+.
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~--~~~~~~~~~~~p~~~w~~~~~ 64 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQ--NVFDIDFFYSHPEEFYRFAKE 64 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcc--cccCHHHHHhCHHHHHHHHHH
Confidence 457888999999999999999999999999999999987532 222223334456555544443
No 30
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=98.93 E-value=5.4e-10 Score=111.06 Aligned_cols=66 Identities=33% Similarity=0.570 Sum_probs=47.8
Q ss_pred HHHHHHHHHhccceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHH
Q psy10043 103 CKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKL 169 (504)
Q Consensus 103 i~~LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L 169 (504)
++.+++++++++++||+|||||||+|||||||+.+|+|+++... .+.........|...+.+...+
T Consensus 3 l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~~~~-~~~~~~~~~~~p~~~w~f~~~~ 68 (242)
T PRK00481 3 IEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPE-DVASPEGFARDPELVWKFYNER 68 (242)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCCCHH-HhccHHHHhhCHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999864321 1112222234555555555443
No 31
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=98.93 E-value=4e-10 Score=110.95 Aligned_cols=39 Identities=46% Similarity=0.855 Sum_probs=35.6
Q ss_pred HHHHHHhccceeeecCCCcccCCCCCCcCCCCccccccc
Q psy10043 106 LAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQ 144 (504)
Q Consensus 106 LaelI~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~ 144 (504)
|++++++++++|++|||||||+|||||||+++|+|+.++
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~ 39 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIY 39 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcC
Confidence 356788899999999999999999999999999999864
No 32
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=98.88 E-value=5e-10 Score=111.51 Aligned_cols=54 Identities=26% Similarity=0.519 Sum_probs=38.7
Q ss_pred HhccceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHH
Q psy10043 111 QNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMA 165 (504)
Q Consensus 111 ~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~ 165 (504)
++++++||+|||||||+||||||||++|+|+++.... +...+.....|.....+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~~~~~-~~~~~~f~~~p~~~~~f 55 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENHRVED-VATPDAFLRNPALVQRF 55 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCCChhh-cCCHHHHHhCHHHHHHH
Confidence 3579999999999999999999999999998764422 22222233445544444
No 33
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=98.87 E-value=6.6e-10 Score=110.13 Aligned_cols=56 Identities=32% Similarity=0.412 Sum_probs=39.1
Q ss_pred cceeeecCCCcccCCCCCCcCCCC-ccccccccCcc-----ccccccccCCCCHHHHHHHHH
Q psy10043 114 KHVVVYTGAGISTAAKIPDYRGTK-GIWTLLQQGKD-----IGNHDLSLAEPTLTHMALYKL 169 (504)
Q Consensus 114 k~iVV~TGAGISt~SGIPDFRg~~-Glw~~~~~~~~-----~~~~~~~~a~Pn~~H~~La~L 169 (504)
|++|++|||||||+||||||||++ |+|+++++... +.........|...+.+.+.+
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~ 62 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKEL 62 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHH
Confidence 589999999999999999999999 99998654321 122223344565544444443
No 34
>KOG2683|consensus
Probab=98.85 E-value=1.7e-09 Score=105.11 Aligned_cols=50 Identities=38% Similarity=0.529 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHHHHhCCcEEEEccCCcccccccCCccccc-chhhhhh
Q psy10043 32 EPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNF-TIYRLKK 81 (504)
Q Consensus 32 ~~~~~~~~~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~-g~Wr~~k 81 (504)
.++..++.+++|..++-.+.+++|+|||||||+||||||||++ |+|.+..
T Consensus 27 ~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~ 77 (305)
T KOG2683|consen 27 ADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSA 77 (305)
T ss_pred CCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecC
Confidence 3444557899999999999999999999999999999999998 9997543
No 35
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=98.78 E-value=2.3e-09 Score=104.92 Aligned_cols=56 Identities=34% Similarity=0.485 Sum_probs=39.9
Q ss_pred cceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHH
Q psy10043 114 KHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKL 169 (504)
Q Consensus 114 k~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L 169 (504)
|+||++|||||||+|||||||+++|+|++++..............|...+.+...+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 56 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRER 56 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCChhhccCCHHHHHHCHHHHHHHHHHh
Confidence 58999999999999999999999999998765321112222234565556555554
No 36
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=98.78 E-value=1.4e-09 Score=106.91 Aligned_cols=58 Identities=29% Similarity=0.542 Sum_probs=42.1
Q ss_pred HhccceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHHH
Q psy10043 111 QNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKL 169 (504)
Q Consensus 111 ~~Ak~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L 169 (504)
++++++||+||||||++|||||||+++|+|++.... .+....+....|...+.+.+++
T Consensus 2 ~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~~~~-~~~~~~~f~~~p~~~w~~~~~~ 59 (222)
T cd01413 2 TKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPE-EVASIDYFYRNPEEFWRFYKEI 59 (222)
T ss_pred CCCCeEEEEECchhhhhhCCCCccCcCCCcCCCCHH-HhccHHHHhHCHHHHHHHHHHH
Confidence 468999999999999999999999999999876432 1222222344566666666554
No 37
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=98.68 E-value=7.1e-09 Score=101.78 Aligned_cols=54 Identities=30% Similarity=0.565 Sum_probs=38.4
Q ss_pred cceeeecCCCcccCCCCCCcCCCCccccccccCccccccccccCCCCHHHHHHHH
Q psy10043 114 KHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYK 168 (504)
Q Consensus 114 k~iVV~TGAGISt~SGIPDFRg~~Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~ 168 (504)
|++|++|||||||+|||||||+++|+|+++... .+....+....|...+.+.+.
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~~~~-~~~~~~~f~~~p~~~w~f~~~ 54 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPE-ELATPEAFARDPELVWEFYNW 54 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCCChh-hcCCHHHHHHCHHHHHHHHHH
Confidence 589999999999999999999999999876542 122222234456555555444
No 38
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=98.63 E-value=1.2e-08 Score=99.50 Aligned_cols=57 Identities=39% Similarity=0.572 Sum_probs=42.0
Q ss_pred cceeeecCCCcccCCCCCCcCCCC-ccccccccCccccccccccCCCCHHHHHHHHHH
Q psy10043 114 KHVVVYTGAGISTAAKIPDYRGTK-GIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLY 170 (504)
Q Consensus 114 k~iVV~TGAGISt~SGIPDFRg~~-Glw~~~~~~~~~~~~~~~~a~Pn~~H~~La~L~ 170 (504)
|++|++||||||++|||||||+.+ |+|+.+...............|...+.+.+++.
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERR 58 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHH
Confidence 589999999999999999999998 999987653221122233445777777766654
No 39
>KOG2682|consensus
Probab=98.62 E-value=3.8e-08 Score=96.01 Aligned_cols=65 Identities=31% Similarity=0.447 Sum_probs=50.4
Q ss_pred HHHHHHHHHHh--CCcEEEEccCCcccccccCCccccc-chhhhhhc------ccccccccccCCChHHHHHHHH
Q psy10043 39 KCKKLAEAIQN--AKHVVVYTGAGISTAAKIPDYRSNF-TIYRLKKI------NKVKSRNEELEDKPEILAAKCK 104 (504)
Q Consensus 39 ~~~~l~~~l~~--~~~ivv~TGAGiS~~SGiPdfR~~~-g~Wr~~kp------e~laS~l~efeDdPe~l~eki~ 104 (504)
.++.+|++++. .++++|+.||||||++||||||||+ |+|.+..+ +-+.. +++|..+|+-++....
T Consensus 23 ~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFe-l~yF~~nP~PF~tLAk 96 (314)
T KOG2682|consen 23 TLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFE-LSYFKKNPEPFFTLAK 96 (314)
T ss_pred hHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhc-cHHhhcCCchHHHHHH
Confidence 37788888884 7789999999999999999999996 89987643 33333 4778888877764433
No 40
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.26 E-value=6.8e-07 Score=88.49 Aligned_cols=77 Identities=27% Similarity=0.407 Sum_probs=53.9
Q ss_pred cceeeecCCCcccCCCCCCcCCC-CccccccccCc-----------c--------------cc--------ccccccCCC
Q psy10043 114 KHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGK-----------D--------------IG--------NHDLSLAEP 159 (504)
Q Consensus 114 k~iVV~TGAGISt~SGIPDFRg~-~Glw~~~~~~~-----------~--------------~~--------~~~~~~a~P 159 (504)
+++|++.|||+|.++|+|++++- ..++..+.... . .. .......+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 47899999999999999998863 22222211100 0 00 001235689
Q ss_pred CHHHHHHHHHHhcCC-ceeEEeecchhhhhhc
Q psy10043 160 TLTHMALYKLYRHGF-VKHVVSQNCDDLHLRS 190 (504)
Q Consensus 160 n~~H~~La~L~~~G~-l~~viTQNIDgLh~rA 190 (504)
+..|.+|+.|-..+. ...+||+|.|.|.++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 999999999977654 6789999999998876
No 41
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=98.15 E-value=4.3e-07 Score=86.08 Aligned_cols=26 Identities=54% Similarity=1.003 Sum_probs=20.9
Q ss_pred CCCcccCCCCCCcCC-CCccccccccC
Q psy10043 121 GAGISTAAKIPDYRG-TKGIWTLLQQG 146 (504)
Q Consensus 121 GAGISt~SGIPDFRg-~~Glw~~~~~~ 146 (504)
||||||+|||||||| ++|+|+++...
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~~~ 27 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYKPE 27 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCHHH
T ss_pred CCccchhhCCCccccCCCCcceeeecc
Confidence 899999999999999 89999987653
No 42
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=92.38 E-value=0.5 Score=42.42 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccceeeecCCCcccC
Q psy10043 103 CKQLAEAIQNAKHVVVYTGAGISTA 127 (504)
Q Consensus 103 i~~LaelI~~Ak~iVV~TGAGISt~ 127 (504)
++++++++.++++.++++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 3577889999999999999887643
No 43
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=92.05 E-value=0.077 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.907 Sum_probs=20.0
Q ss_pred CcEEEEccCCcccccccCCccc
Q psy10043 51 KHVVVYTGAGISTAAKIPDYRS 72 (504)
Q Consensus 51 ~~ivv~TGAGiS~~SGiPdfR~ 72 (504)
+++|+|.|||+|..+|+|++++
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~ 22 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKT 22 (242)
T ss_pred CCEEEEecCccccccCCCChHH
Confidence 4789999999999999999875
No 44
>PRK08322 acetolactate synthase; Reviewed
Probab=83.68 E-value=2.8 Score=46.44 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=45.2
Q ss_pred HHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCC
Q psy10043 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKK 345 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~ 345 (504)
.+...+++||++|++||++.-.+. ..|. .....+++.||.++...+
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~--~~~~----~~~~~~~i~id~d~~~~~---------------------------- 300 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPP--FFMN----PNGDKKVIHINFLPAEVD---------------------------- 300 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccc--cccC----CCCCCeEEEEeCCHHHcC----------------------------
Confidence 355678899999999999875421 1111 112345666665432110
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
.....++.|.||.-.++++|.+.|.
T Consensus 301 --------------~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 301 --------------PVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred --------------CCcCCCeEEecCHHHHHHHHHHhcc
Confidence 0112468899999999999998874
No 45
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.34 E-value=2.7 Score=47.07 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCC
Q psy10043 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKK 345 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~ 345 (504)
.+.+.+++||++|+|||++.......+.. . ....++|.||.++...
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~----~-~~~~~~i~id~d~~~i----------------------------- 310 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEK----Y-CPNATILHIDIDPSSI----------------------------- 310 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhh----c-CCCCeEEEEECCHHHh-----------------------------
Confidence 45567889999999999986642111100 0 1123555555443211
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcCC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLNL 385 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg~ 385 (504)
.+....++.|.||..+++++|.+.|..
T Consensus 311 -------------~~~~~~~~~i~~D~~~~l~~L~~~l~~ 337 (572)
T PRK08979 311 -------------SKTVRVDIPIVGSADKVLDSMLALLDE 337 (572)
T ss_pred -------------CCccCCceEEecCHHHHHHHHHHhhhh
Confidence 011225799999999999999998853
No 46
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.38 E-value=3.1 Score=46.49 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=44.9
Q ss_pred HHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCC
Q psy10043 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKK 345 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~ 345 (504)
.+.+.+++||++|++||++.......+... ....++|.||.++....
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~-----~~~~~~i~id~d~~~i~---------------------------- 311 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKY-----CPNATVLHIDIDPTSIS---------------------------- 311 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhc-----CCCCeEEEEECCHHHhC----------------------------
Confidence 455678899999999999866421111000 11235666665442110
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
+....++.|.||+-.++++|.+.|.
T Consensus 312 --------------~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 312 --------------KTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred --------------CcccCCeEEecCHHHHHHHHHHhhh
Confidence 0112578999999999999998774
No 47
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=82.18 E-value=2.8 Score=47.31 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCC
Q psy10043 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKK 345 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~ 345 (504)
.+.+.+++||++|++||+|.......+.. . ....++|.||.++...
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~----~-~~~~~~i~Id~d~~~i----------------------------- 335 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDS----F-APDAKVIHADIDPAEI----------------------------- 335 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh----c-CCCCcEEEEECCHHHh-----------------------------
Confidence 45678889999999999986531111100 0 1123455555543210
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
.+....++.|.||+.+++++|.+.|.
T Consensus 336 -------------~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 336 -------------GKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred -------------CCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 01122578999999999999999874
No 48
>PRK06154 hypothetical protein; Provisional
Probab=80.41 E-value=4.2 Score=45.54 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCC
Q psy10043 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKK 345 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~ 345 (504)
.+.+.+++||++|++||+|.-.. +. +. .....++|.||.++...
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~-~~--~~----~~~~~~vI~id~d~~~~----------------------------- 316 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSY-YG--LP----MPEGKTIIHSTLDDADL----------------------------- 316 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccc-cC--cc----CCCCCeEEEEECCHHHh-----------------------------
Confidence 45567889999999999986531 11 11 01124555565543211
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
.+....++.|.||+..++++|++.|.
T Consensus 317 -------------~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 317 -------------NKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred -------------ccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 01112468899999999999999875
No 49
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=80.29 E-value=4.6 Score=44.73 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=44.1
Q ss_pred HHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCC
Q psy10043 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKK 345 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~ 345 (504)
.+.+.+++||++|++|+++.-+. +..|. .....++|.||.++....
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~--~~~~~----~~~~~~~i~id~d~~~~~---------------------------- 300 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYE--PRNWN----SENDATIVHIDVEPAQID---------------------------- 300 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccC--ccccC----cCCCCeEEEEeCChHHcC----------------------------
Confidence 34567889999999999975431 11111 111245666665543210
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
.....++.|.||.-.+++.|.+.|.
T Consensus 301 --------------~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 301 --------------NNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred --------------CccCCCeEEecCHHHHHHHHHHhhc
Confidence 0112468899999999999988774
No 50
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=80.02 E-value=4.3 Score=45.58 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.8
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|.+.|.
T Consensus 313 ~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 313 VSVGICGDAKAVARELLARLA 333 (588)
T ss_pred CCceEecCHHHHHHHHHHhhh
Confidence 578899999999999999885
No 51
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=79.83 E-value=3.8 Score=46.33 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.6
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-.++++|.+.|.
T Consensus 334 ~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 334 PDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred CCeEEecCHHHHHHHHHHhhh
Confidence 578999999999999998874
No 52
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=79.75 E-value=3.9 Score=45.93 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=18.6
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|++.|+
T Consensus 303 ~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 303 VDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred CCeEEEcCHHHHHHHHHHhhc
Confidence 468899999999999999886
No 53
>PRK07524 hypothetical protein; Provisional
Probab=79.27 E-value=4.9 Score=44.50 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.8
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+..++++|.+.|.
T Consensus 309 ~~~~i~~D~~~~L~~L~~~l~ 329 (535)
T PRK07524 309 PALALVGDARAALEALLARLP 329 (535)
T ss_pred CCceEecCHHHHHHHHHHhcc
Confidence 568999999999999999875
No 54
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.13 E-value=4.8 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.4
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-++++.|++.|.
T Consensus 316 ~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 316 AYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred CceEEecCHHHHHHHHHHHhh
Confidence 468999999999999998773
No 55
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.42 E-value=4.9 Score=44.82 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.3
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+.+++++|.+.|.
T Consensus 313 ~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 313 ADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred CCeEEecCHHHHHHHHHHhhh
Confidence 468899999999999998773
No 56
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=78.28 E-value=4.2 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.4
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+..++++|++.|.
T Consensus 327 ~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 327 PQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred CCeEEecCHHHHHHHHHHHhh
Confidence 468999999999999998774
No 57
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.28 E-value=5.3 Score=45.05 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=18.4
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+..++++|++.|.
T Consensus 324 ~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 324 VDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred CCeEEecCHHHHHHHHHHhhh
Confidence 578999999999999998774
No 58
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=78.07 E-value=0.5 Score=43.88 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=23.4
Q ss_pred CCchhHHHHHHHHHhhhhccccccccccCChHHHHHHHHHHHHHHHhCCcEEEEc
Q psy10043 3 LDSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYT 57 (504)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~l~~~~~ivv~T 57 (504)
+|..++++.++....+++|.++.+-..-+. ..++.+.+.|++|++|+|+|
T Consensus 104 Le~~~~~~lIk~Lq~Am~kVls~R~RL~~f-----~Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 104 LEKKQIVRLIKDLQKAMNKVLSTRIRLPNF-----NTIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp -EEEEE---B-EE--------------TT-------SHHHHHHHHHH-SSEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----CcHHHHHHHHHhcCceEEeC
Confidence 356677888888888999998877666554 45778999999999999998
No 59
>PRK08611 pyruvate oxidase; Provisional
Probab=77.84 E-value=5.7 Score=44.55 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=18.2
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|.+.|.
T Consensus 306 ~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 306 VNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred CCeeEecCHHHHHHHHHHhcc
Confidence 468899999999999998875
No 60
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=77.72 E-value=6 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.3
Q ss_pred HHHHHHhcCCeeEEEccccccc
Q psy10043 266 GANKNADRADLILCVGSSLKVL 287 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~ 287 (504)
.+.+.+++||++|++||++...
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~ 298 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQN 298 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 4667788999999999998654
No 61
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=77.49 E-value=5.1 Score=45.11 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.7
Q ss_pred ccEEEecCHHHHHHHHHHHc
Q psy10043 364 ATLKINGKCDVVFKQLMAHL 383 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~L 383 (504)
.++.|.||.-.++++|.+.|
T Consensus 313 ~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 313 PDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred CCeEEEeCHHHHHHHHHHHh
Confidence 46899999999999999876
No 62
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=77.15 E-value=6.1 Score=44.12 Aligned_cols=21 Identities=14% Similarity=0.525 Sum_probs=18.5
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-.++++|++.|.
T Consensus 318 ~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 318 VDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred CCeEEecCHHHHHHHHHHHhh
Confidence 568899999999999998874
No 63
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.67 E-value=6.7 Score=43.96 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=18.6
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|.+.|+
T Consensus 324 ~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 324 VEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred CCeEEecCHHHHHHHHHHhcc
Confidence 578999999999999998875
No 64
>PRK08266 hypothetical protein; Provisional
Probab=76.64 E-value=4.9 Score=44.48 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.1
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+..++++|++.|.
T Consensus 305 ~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 305 PDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred CCceEecCHHHHHHHHHHhhh
Confidence 468899999999999998774
No 65
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.46 E-value=6 Score=44.28 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.5
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+..+++.|.+.|.
T Consensus 316 ~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 316 ADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred CCeEEecCHHHHHHHHHHHhh
Confidence 578999999999999988774
No 66
>PLN02470 acetolactate synthase
Probab=76.05 E-value=6.7 Score=44.05 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.0
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...+++.|.+.|.
T Consensus 323 ~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 323 PHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred CCeEEecCHHHHHHHHHHhhh
Confidence 468899999999999988774
No 67
>PRK08617 acetolactate synthase; Reviewed
Probab=75.44 E-value=7 Score=43.45 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.0
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+..+++.|.+.+.
T Consensus 311 ~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 311 PERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred CCeEEeCCHHHHHHHHHHhhh
Confidence 468899999999999988764
No 68
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=74.68 E-value=7.4 Score=43.84 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=43.7
Q ss_pred HHHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCC
Q psy10043 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKK 345 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~ 345 (504)
.+.+.+++|||+|++||++... .+ . +.....++|-||.++....
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~---~~---~--~~~~~~~~i~Id~d~~~~~---------------------------- 308 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYS---EF---L--PKEGQARGVQIDIDGRMLG---------------------------- 308 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHH---hc---C--CCCCCCeEEEEeCCHHHcC----------------------------
Confidence 4556788999999999997431 11 1 1112346666665542110
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
+....++.|.||.-.++++|++.|.
T Consensus 309 --------------~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 309 --------------LRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred --------------CCCCCCceEecCHHHHHHHHHHhhh
Confidence 0111357789999999999998875
No 69
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.72 E-value=7.3 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.3
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-+++++|++.|.
T Consensus 332 ~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 332 VDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred CCeEEecCHHHHHHHHHHhhh
Confidence 578999999999999998773
No 70
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=73.16 E-value=6.7 Score=43.90 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.0
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|.+.|.
T Consensus 324 ~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 324 CDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred eeEEEecCHHHHHHHHHHHHh
Confidence 579999999999999999885
No 71
>PRK11269 glyoxylate carboligase; Provisional
Probab=71.72 E-value=9.7 Score=42.82 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=18.2
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...+++.|.+.|.
T Consensus 314 ~~~~i~~D~~~~l~~L~~~l~ 334 (591)
T PRK11269 314 PDLGIVSDAKAALELLVEVAR 334 (591)
T ss_pred CCeEEEeCHHHHHHHHHHHhh
Confidence 468899999999999998873
No 72
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=71.11 E-value=11 Score=42.03 Aligned_cols=21 Identities=19% Similarity=0.014 Sum_probs=17.9
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|.+.+.
T Consensus 317 ~~~~i~~D~~~~l~~L~~~~~ 337 (557)
T PRK08199 317 PDLAIVADPAAFAAALAALEP 337 (557)
T ss_pred CCeEEecCHHHHHHHHHhccc
Confidence 468999999999999988654
No 73
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=70.75 E-value=11 Score=42.18 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.7
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-.++++|.+.|.
T Consensus 317 ~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 317 VDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred CCeEEEeCHHHHHHHHHHhcc
Confidence 478999999999999999875
No 74
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=70.34 E-value=12 Score=41.92 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=18.6
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||.-.++++|++.|.
T Consensus 309 ~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 309 VTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred CCeeEecCHHHHHHHHHHhhh
Confidence 568899999999999999884
No 75
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=70.26 E-value=10 Score=42.47 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.7
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||.-.++.+|.+.|.
T Consensus 304 ~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 304 VDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred CCeEEEccHHHHHHHHHHhhh
Confidence 468899999999999988774
No 76
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=69.97 E-value=11 Score=41.79 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=16.9
Q ss_pred ccEEEecCHHHHHHHHHHHc
Q psy10043 364 ATLKINGKCDVVFKQLMAHL 383 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~L 383 (504)
.++.|.||...++++|.+.+
T Consensus 306 ~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 306 AHVALQGDLNALLPALQQPL 325 (548)
T ss_pred CCeEEecCHHHHHHHHHHhc
Confidence 56889999999999998765
No 77
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=69.03 E-value=13 Score=41.64 Aligned_cols=21 Identities=5% Similarity=0.268 Sum_probs=18.2
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+..++++|.+.|.
T Consensus 306 ~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 306 TDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred CCeEEecCHHHHHHHHHHhcc
Confidence 468899999999999988775
No 78
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=68.06 E-value=15 Score=41.29 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.5
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||.-.+++.|++.|.
T Consensus 313 ~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 313 VDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred CceEEecCHHHHHHHHHHhhh
Confidence 468999999999999999874
No 79
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=67.61 E-value=13 Score=41.45 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.6
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-+++++|.+.|.
T Consensus 311 ~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 311 VDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred CCeEEecCHHHHHHHHHHhhh
Confidence 478999999999999999874
No 80
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=66.86 E-value=14 Score=41.15 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.9
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||.-+++++|.+.|.
T Consensus 321 ~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 321 PHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred CCeEEecCHHHHHHHHHHhhc
Confidence 468899999999999988764
No 81
>PRK05858 hypothetical protein; Provisional
Probab=66.73 E-value=14 Score=40.99 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=43.7
Q ss_pred HHHHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCC
Q psy10043 267 ANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKE 346 (504)
Q Consensus 267 a~~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~ 346 (504)
+.+.+++||++|++||++.....+. +. ....++|.|+.++....
T Consensus 256 ~~~~l~~aD~vl~vG~~~~~~~~~~--~~-----~~~~~~i~id~d~~~~~----------------------------- 299 (542)
T PRK05858 256 RGKALGEADVVLVVGVPMDFRLGFG--VF-----GGTAQLVHVDDAPPQRA----------------------------- 299 (542)
T ss_pred HHHHHHhCCEEEEECCCCccccccc--cc-----CCCCEEEEECCCHHHhc-----------------------------
Confidence 4567889999999999875431111 11 11246666665542210
Q ss_pred CCceEEeccccCCCCCcccEEEecCHHHHHHHHHHHcC
Q psy10043 347 RPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 347 ~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
+....++.|.|++-.++++|.+.|.
T Consensus 300 -------------~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (542)
T PRK05858 300 -------------HHRPVAAGLYGDLSAILSALAGAGG 324 (542)
T ss_pred -------------CCCCCceEEeCCHHHHHHHHHHhcc
Confidence 0012468899999999999988775
No 82
>PRK07064 hypothetical protein; Provisional
Probab=66.37 E-value=14 Score=40.85 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.2
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-.++++|.+.|.
T Consensus 307 ~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 307 NDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred CCceEecCHHHHHHHHHHhhh
Confidence 468899999999999998774
No 83
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=65.90 E-value=14 Score=41.28 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.7
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...+++.|.+.|.
T Consensus 320 ~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 320 TDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred CCeEEecCHHHHHHHHHHhhc
Confidence 468899999999999988774
No 84
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=64.92 E-value=4.9 Score=28.37 Aligned_cols=34 Identities=15% Similarity=0.375 Sum_probs=20.8
Q ss_pred cceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCcc
Q psy10043 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLL 246 (504)
Q Consensus 204 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~Lr 246 (504)
++..+|..|++.++..... .......| .||+.++
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~---------~~~~~~~CP~Cg~~~~ 37 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKI---------SDDPLATCPECGGDVR 37 (41)
T ss_pred CEEEEcCCCCCEEEEEEec---------CCCCCCCCCCCCCcce
Confidence 3566999999754322111 11346789 9998654
No 85
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=64.52 E-value=14 Score=41.41 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.2
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|.+.+.
T Consensus 309 ~~~~i~gD~~~~l~~L~~~l~ 329 (550)
T COG0028 309 VDVPIVGDAKATLEALLEELK 329 (550)
T ss_pred CCeeEeccHHHHHHHHHHhhh
Confidence 679999999999999999885
No 86
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=63.95 E-value=17 Score=40.75 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=18.3
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||...++++|.+.++
T Consensus 325 ~~~~i~~D~~~~l~~L~~~~~ 345 (571)
T PRK07710 325 TEIPIVADAKQALQVLLQQEG 345 (571)
T ss_pred CCeEEecCHHHHHHHHHHhhh
Confidence 468999999999999988775
No 87
>KOG1185|consensus
Probab=63.71 E-value=18 Score=39.95 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred ccEEEecCHHHHHHHHHHHcCC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLNL 385 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg~ 385 (504)
.|+.|.||...++.+|.++|+-
T Consensus 322 ~~v~i~gDig~~~~~L~e~l~~ 343 (571)
T KOG1185|consen 322 PDVAIQGDIGLFVLQLVEELQD 343 (571)
T ss_pred CCceeeecHHHHHHHHHHHhcC
Confidence 5789999999999999999974
No 88
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=61.77 E-value=14 Score=39.83 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.2
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-.++++|.+.+.
T Consensus 317 ~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 317 ATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred ceEEEEECHHHHHHHhhhccC
Confidence 468999999999999988773
No 89
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=60.52 E-value=19 Score=40.19 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.3
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-.++++|++.|.
T Consensus 317 ~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 317 IAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred CceeEecCHHHHHHHHHHHhh
Confidence 468899999999999998874
No 90
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=59.89 E-value=19 Score=40.16 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.3
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.||+-+++++|.+.|.
T Consensus 310 ~~~~i~~D~~~~l~~L~~~l~ 330 (554)
T TIGR03254 310 IAAPVVGDIGSVVQALLSAAK 330 (554)
T ss_pred CceEEecCHHHHHHHHHHHhh
Confidence 468899999999999999874
No 91
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=59.53 E-value=5.5 Score=45.87 Aligned_cols=83 Identities=24% Similarity=0.366 Sum_probs=59.1
Q ss_pred ccCCCCC--CCCCC----ccccEEEecCCCCCCChhhHHHHHHHHhcCCeeEEEccccccccccccc-ccCCCCcc-CCC
Q psy10043 233 HQTARKC--SCGEP----LLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWL-WGLDRPKK-ERP 304 (504)
Q Consensus 233 ~~~~P~C--~Cgg~----LrP~IV~FGE~~~~~~~~~~~~a~~~~~~aDllLVvGTSL~V~~~~~~~-~~~~~~~~-~~~ 304 (504)
...+-.| -|..+ |-+.+=.++.+. .++.+..+|++|+|||.-+=. .|.. ..+.++.+ ++.
T Consensus 384 tNNVDncsR~CqsPa~~gL~rTvG~g~dsg----------si~dve~ad~vliIG~N~te~--HPV~asr~kra~k~~G~ 451 (978)
T COG3383 384 TNNVDNCSRYCQSPATDGLFRTVGSGADSG----------SIEDVEGADLVLIIGANPTEG--HPVLASRLKRAHKLRGQ 451 (978)
T ss_pred cCCcccchhhccCcccccchheeeccCCCC----------CHHHHhhCCeEEEEcCCCCcc--CccHHHHHHHHHHhcCC
Confidence 4456677 67653 566677777763 235678999999999975432 3332 33455555 889
Q ss_pred eEEEEcCCCCCCCcccceeecCC
Q psy10043 305 KLCIVNLQWTPKDDQATLKINGK 327 (504)
Q Consensus 305 ~liiIN~~~t~~d~~a~~~i~~~ 327 (504)
|||++.+.++.....|++.++-+
T Consensus 452 KliV~D~R~~emaerAdlf~~pk 474 (978)
T COG3383 452 KLIVIDPRKHEMAERADLFLHPK 474 (978)
T ss_pred eEEEeccchhHHHHhhhcccCCC
Confidence 99999999999988888887754
No 92
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=58.55 E-value=2.7 Score=39.23 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=48.3
Q ss_pred HHHHHHHHHHh----cCCceeEEeecchhhhhhcCCCCCCccccCCccceeeccCCCCCcccccccchhhhhhhhhccCC
Q psy10043 161 LTHMALYKLYR----HGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTA 236 (504)
Q Consensus 161 ~~H~~La~L~~----~G~l~~viTQNIDgLh~rAG~~~~~viElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~ 236 (504)
.+|+-+-.+-. +|+....+-|.|+||.-..-.+. .+..+-|..+..+|. |+....-.+..+ ....+..
T Consensus 69 LaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~~-~~~~v~~~~~~Y~C~-C~q~~l~~RRhn------~~~~g~~ 140 (156)
T COG3091 69 LAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQF-EVQSVRRTTYPYRCQ-CQQHYLRIRRHN------TVRRGEV 140 (156)
T ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccchH-HHhhccccceeEEee-cCCccchhhhcc------cccccce
Confidence 36666555433 36667777888999887664432 355667888999999 996421111111 1112235
Q ss_pred CCC-CCCCCcc
Q psy10043 237 RKC-SCGEPLL 246 (504)
Q Consensus 237 P~C-~Cgg~Lr 246 (504)
-+| +|+|.|+
T Consensus 141 YrC~~C~gkL~ 151 (156)
T COG3091 141 YRCGKCGGKLV 151 (156)
T ss_pred EEeccCCceEE
Confidence 689 9999875
No 93
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=56.96 E-value=6.9 Score=42.55 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=40.5
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.++.+||++|++|+...+.......+ +..+++++.++++|++..+.....++..+.
T Consensus 166 ~d~~~ad~il~~G~N~~~~~~~~~~~-l~~ar~~GaklividPr~s~ta~~Ad~~l~ 221 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTRTPDAHF-LTEARYNGAKVVVVSPDYSPSAKHADLWVP 221 (461)
T ss_pred hHHhcCcEEEEECCChHHccCchHHH-HHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence 45689999999999976642111112 223556788999999999998888887664
No 94
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=55.86 E-value=8.6 Score=27.94 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=20.8
Q ss_pred cceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCC-Ccc
Q psy10043 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGE-PLL 246 (504)
Q Consensus 204 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg-~Lr 246 (504)
++..+|.+|+..++....+ .......| .||+ .++
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~---------~~~~~~~CP~Cg~~~~~ 38 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQSI---------SEDDPVPCPECGSTEVR 38 (42)
T ss_pred CEEEEeCCCCCEEEEEEEc---------CCCCCCcCCCCCCCceE
Confidence 4567999999754332111 11346789 9998 443
No 95
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=55.75 E-value=28 Score=38.80 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.3
Q ss_pred HHHHHHhcCCeeEEEcccccc
Q psy10043 266 GANKNADRADLILCVGSSLKV 286 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V 286 (504)
.+.+.+++||++|++||++..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~ 272 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPY 272 (549)
T ss_pred HHHHHHHhCCEEEEECCCCCh
Confidence 455678899999999999854
No 96
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=53.60 E-value=6.1 Score=42.82 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 270 NADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 270 ~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.+.+||++|++|+-.......+....+..+.+++.++++|++..+.....|++.|.
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 45689999999998765421121222223456788999999999998888887653
No 97
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=52.69 E-value=8.2 Score=42.49 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=40.2
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i 324 (504)
+.+.+||++|++|+...+... .....+..+..++.+||+|++..+.....|++.+
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p-~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l 207 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNI-HLMRIIQEARKRGAKVVVIDPYRTATAARADLHI 207 (501)
T ss_pred HHHhcCCEEEEECCChhhhch-hHHHHHHHHHHCCCEEEEECCCCCccHHHhCeee
Confidence 467899999999999776311 1111223356778999999999999888888765
No 98
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=51.70 E-value=34 Score=37.82 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.0
Q ss_pred ccEEEecCHHHHHHHHHHHcC
Q psy10043 364 ATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 364 adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++.|.|++-.++++|.+.|.
T Consensus 316 ~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 316 MGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred CCCcccCCHHHHHHHHHHhhc
Confidence 457788999899999988775
No 99
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=51.66 E-value=9.4 Score=35.50 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=19.9
Q ss_pred cceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCC
Q psy10043 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEP 244 (504)
Q Consensus 204 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~ 244 (504)
....+|.+|++...+. ....+|.| +||+.
T Consensus 110 ~G~l~C~~Cg~~~~~~------------~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELT------------HPERLPPCPKCGHT 139 (146)
T ss_pred CceEecccCCCEEEec------------CCCcCCCCCCCCCC
Confidence 4567999999753221 12358999 99975
No 100
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=51.17 E-value=18 Score=40.23 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=17.4
Q ss_pred HHHHHHhcCCeeEEEcccccc
Q psy10043 266 GANKNADRADLILCVGSSLKV 286 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V 286 (504)
.+.+.+++||++|++||+|.-
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~ 285 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTD 285 (539)
T ss_pred HHHHHHhhCCEEEEECCcccc
Confidence 455678899999999999864
No 101
>PRK11032 hypothetical protein; Provisional
Probab=51.11 E-value=8.5 Score=36.36 Aligned_cols=29 Identities=24% Similarity=0.661 Sum_probs=19.8
Q ss_pred cceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCC
Q psy10043 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEP 244 (504)
Q Consensus 204 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~ 244 (504)
+...+|.+|++...+ .....+|.| +||+.
T Consensus 122 ~G~LvC~~Cg~~~~~------------~~p~~i~pCp~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHLAF------------YTPEVLPLCPKCGHD 151 (160)
T ss_pred cceEEecCCCCEEEe------------cCCCcCCCCCCCCCC
Confidence 456799999975321 122458999 99974
No 102
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=50.68 E-value=9.6 Score=42.68 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
..+.+||++|++|+...+.... ....+..+++++.++|+|++..+.....|++.|.
T Consensus 155 ~D~~~ad~il~~G~Np~~s~~~-~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 155 TDWVNAKTIIIWGSNILETQFQ-DAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred hHHhcCcEEEEECCChHHccch-hHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 4567999999999997665211 1222223556889999999999998888887654
No 103
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=50.17 E-value=8.5 Score=44.06 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=38.4
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccC-CCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKE-RPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~-~~~liiIN~~~t~~d~~a~~~i 324 (504)
.++++||+||++|+-........+.++. .++.+ +.+||+|.+..+.....|++.+
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~-~Ak~~~GaklIvVDPR~t~Ta~~AD~~l 220 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWIL-EAKEKNGAKLIVVDPRFTRTAAKADLYV 220 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHH-HHHHcCCCeEEEEcCCCCchhHhcCEee
Confidence 4578899999999987654111122222 23444 8899999999999888888654
No 104
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=46.44 E-value=9.2 Score=41.66 Aligned_cols=56 Identities=18% Similarity=-0.000 Sum_probs=39.6
Q ss_pred HHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 270 NADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 270 ~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
++.+||++|++|+-............+..++.++.++++|++..+.....++..|.
T Consensus 157 d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 157 DWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 56799999999999766421011122223455788999999999998888887654
No 105
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=46.27 E-value=14 Score=27.58 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=19.1
Q ss_pred cceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCC
Q psy10043 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGE 243 (504)
Q Consensus 204 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg 243 (504)
++..+|.+|+..++.+..+. ......| .||+
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~---------~~~~~~CP~Cg~ 34 (52)
T TIGR02605 3 IYEYRCTACGHRFEVLQKMS---------DDPLATCPECGG 34 (52)
T ss_pred CEEEEeCCCCCEeEEEEecC---------CCCCCCCCCCCC
Confidence 35679999997644332211 1235679 9997
No 106
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=46.21 E-value=11 Score=39.12 Aligned_cols=55 Identities=27% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i 324 (504)
..+.+||++|++|+........ ....+..+..++.++++|++..+.....++..+
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~-~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i 206 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPV-LAARLRRAKKRGAKLIVIDPRRTETAAKADEWL 206 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChH-HHHHHHHHHHCCCeEEEEcCCCCcchHhhCEee
Confidence 3467999999999987665211 122233345578899999999988777777654
No 107
>PLN02573 pyruvate decarboxylase
Probab=46.20 E-value=38 Score=38.11 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=17.8
Q ss_pred HHHHHHhcCCeeEEEccccccc
Q psy10043 266 GANKNADRADLILCVGSSLKVL 287 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~ 287 (504)
.+.+.+++||++|++||+|.-.
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~ 305 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDY 305 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCc
Confidence 4556778999999999998654
No 108
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.20 E-value=14 Score=40.88 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.2
Q ss_pred HHhcCCeeEEEcccccccccccccc-------cCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 270 NADRADLILCVGSSLKVLRKYGWLW-------GLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 270 ~~~~aDllLVvGTSL~V~~~~~~~~-------~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
++.+||++|++|+-..+.. +..+ .+..+++++.++++|++..+.....|+..|.
T Consensus 153 D~~~ad~il~~G~N~~~s~--~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ 213 (539)
T cd02762 153 DIDRTDYLLILGANPLQSN--GSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF 213 (539)
T ss_pred hhhhCCEEEEEecChHhhC--CccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence 5689999999999877642 2111 1223456788999999999998888887653
No 109
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.13 E-value=16 Score=30.38 Aligned_cols=42 Identities=26% Similarity=0.529 Sum_probs=25.6
Q ss_pred ceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCcc-----ccEEEecCC
Q psy10043 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLL-----DTIIHFGEK 255 (504)
Q Consensus 205 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~Lr-----P~IV~FGE~ 255 (504)
+...|..|+.. |++-+ .+.....-.| .||+.|| +.|+|=|-.
T Consensus 11 Y~Y~c~~cg~~------~dvvq---~~~ddplt~ce~c~a~~kk~l~~vgi~fKGSG 58 (82)
T COG2331 11 YSYECTECGNR------FDVVQ---AMTDDPLTTCEECGARLKKLLNAVGIVFKGSG 58 (82)
T ss_pred eEEeecccchH------HHHHH---hcccCccccChhhChHHHHhhccceEEEecce
Confidence 45689999974 33322 1223345579 9998764 666665543
No 110
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=40.42 E-value=17 Score=41.11 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHhcCCeeEEEccccccccccccc-ccCCCCccCC-CeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWL-WGLDRPKKER-PKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~-~~~~~~~~~~-~~liiIN~~~t~~d~~a~~~i~ 325 (504)
..+.+||++|++|+..... .|.. ..+..+.+++ .++++||+..+.....|+.++.
T Consensus 358 ~di~~ad~il~~G~N~~~s--~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~ 414 (603)
T TIGR01973 358 ADIEEADLVLLVGADLRQE--APLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLV 414 (603)
T ss_pred HHHHhCCEEEEEccCchhh--hHHHHHHHHHHHhcCCcEEEEECCccccchhhhcccee
Confidence 4577899999999987654 2322 1122233344 8999999999888888887653
No 111
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=39.13 E-value=18 Score=41.72 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=38.3
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.++.+||++|++|+..... ..+....+..++.++.++|+||+..+.....|+..|.
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~-~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHH-SNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred hHHHhCCEEEEECCCCccc-CchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 4677999999999853321 1122222223456788999999999988888887653
No 112
>PRK14873 primosome assembly protein PriA; Provisional
Probab=37.63 E-value=56 Score=37.70 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=23.5
Q ss_pred CCCCCceEEeccccCCCCCcccEEEecCHHHHHHHHH-HHcCCCCCCCcC
Q psy10043 344 KKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLM-AHLNLDIPAYDK 392 (504)
Q Consensus 344 ~~~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~-~~Lg~~ip~~~~ 392 (504)
...+++++|.+ +|........+.+|-+.+...-+ ++=-...|+|.+
T Consensus 526 ~~~~G~V~iq~---~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~ 572 (665)
T PRK14873 526 RADGGQVVVVA---ESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVR 572 (665)
T ss_pred CCCCCEEEEEe---CCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCcee
Confidence 34567777763 23222233344556666665544 333344677664
No 113
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=37.54 E-value=18 Score=43.53 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHhcCCeeEEEccccccccccccc-ccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWL-WGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~-~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.++.+||+||++|+-.... .|.. ..+..++.++.+||+||+..+.....|++.+.
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es--~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ 272 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAEN--HPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAP 272 (1009)
T ss_pred HHHHhCCEEEEECCChhhh--ChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeC
Confidence 4578999999999987654 2221 11223556789999999999988888887653
No 114
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=37.47 E-value=23 Score=37.05 Aligned_cols=52 Identities=27% Similarity=0.312 Sum_probs=34.6
Q ss_pred HHHhcCCeeEEEccccccccccccc-ccCCCC-ccCCCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWL-WGLDRP-KKERPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~-~~~~~~-~~~~~~liiIN~~~t~~d~~a~~~i 324 (504)
..+.+||++|++|+.+... .|.. ..+... ..++.++++|++..+.. .++..+
T Consensus 144 ~di~~ad~il~~G~n~~~~--~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~ 197 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKE--APLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTY 197 (386)
T ss_pred HHHhhCCEEEEEcCCcchh--chHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEE
Confidence 4567999999999988654 2322 112223 23488999999988777 556544
No 115
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=37.39 E-value=18 Score=42.06 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHhcCCeeEEEcccccccccccc---cccCCCCc-cCCCeEEEEcCCCCCCC---cccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGW---LWGLDRPK-KERPKLCIVNLQWTPKD---DQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~---~~~~~~~~-~~~~~liiIN~~~t~~d---~~a~~~i 324 (504)
.++.+||++|++||....... +. ...+..++ +++.++|+|++..+... ..++++|
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~-~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wl 268 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGN-PFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWV 268 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCC-CcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEE
Confidence 456799999999999876521 11 12222233 36789999999998876 6777665
No 116
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.37 E-value=1.6e+02 Score=32.77 Aligned_cols=23 Identities=4% Similarity=0.096 Sum_probs=17.6
Q ss_pred hHHHHHHHHhcCCeeEEEccccc
Q psy10043 263 NWDGANKNADRADLILCVGSSLK 285 (504)
Q Consensus 263 ~~~~a~~~~~~aDllLVvGTSL~ 285 (504)
.++...+.+.+-+.=|+|||.+.
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCccc
Confidence 34667778877778888999974
No 117
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=36.23 E-value=19 Score=39.48 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=39.4
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.++.+||++|++|+........ ....+..+..++.+++.|++..+.....++..|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~-~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPV-IARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHH-HHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 3567999999999987654211 1122233456789999999999988888887654
No 118
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=36.19 E-value=21 Score=42.47 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
..+.+||+||++|+-..+... +....+..++.++.+||+|++..+.....||+.|.
T Consensus 220 ~D~~na~~Il~~G~Np~~t~~-~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlp 275 (912)
T TIGR03479 220 DDWFNADYIIMWGSNPSVTRI-PDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLP 275 (912)
T ss_pred hhhhcCcEEEEecCChHHcCC-chHHHHHHHHhcCCeEEEECCCCChhhhhCCeecC
Confidence 456789999999998766421 12222334567889999999999998888887653
No 119
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=35.59 E-value=20 Score=40.36 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHhcCCeeEEEcccccccccccc-cccCCCCccCCCeEEEEcCCCC
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGW-LWGLDRPKKERPKLCIVNLQWT 314 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~-~~~~~~~~~~~~~liiIN~~~t 314 (504)
+++.+||+||++|+-.... .|. ...+..+++++.+||+||+.++
T Consensus 159 ~Di~~ad~Il~~G~Np~~~--~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTN--HPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhh--cHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 4677999999999986553 222 2223346678899999999765
No 120
>PRK09939 putative oxidoreductase; Provisional
Probab=35.43 E-value=20 Score=41.89 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHhcCCeeEEEcccccccccccc-cccCCCCccCCCeEEEEcCCCCC
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGW-LWGLDRPKKERPKLCIVNLQWTP 315 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~-~~~~~~~~~~~~~liiIN~~~t~ 315 (504)
+++.+||++|++|+-.... .|. ...+..+++++.+||+||+..+.
T Consensus 204 ~Di~~ad~Ili~G~Np~~~--hP~~~~~l~~a~~rGakiIvIDPr~~~ 249 (759)
T PRK09939 204 EDFEKCDLVICIGHNPGTN--HPRMLTSLRALVKRGAKMIAINPLQER 249 (759)
T ss_pred HHHhhCCEEEEeCCChHHH--HHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 4678999999999986653 232 12223356678999999997753
No 121
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=34.85 E-value=69 Score=35.48 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=18.7
Q ss_pred HHHHHHhcCCeeEEEccccccc
Q psy10043 266 GANKNADRADLILCVGSSLKVL 287 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V~ 287 (504)
.|-..+.+|||+|-|||-++=.
T Consensus 288 AAN~~A~~ADlVigiGTR~~DF 309 (617)
T COG3962 288 AANRAAEEADLVIGIGTRLQDF 309 (617)
T ss_pred HHHhhhhhcCEEEEeccccccc
Confidence 5667889999999999998764
No 122
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=34.04 E-value=26 Score=37.94 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=24.2
Q ss_pred HHHhcCCeeEEEccccccccccccc--ccCCCCccCCCeEEEEcCCC
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWL--WGLDRPKKERPKLCIVNLQW 313 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~--~~~~~~~~~~~~liiIN~~~ 313 (504)
.++.+||++|++|+-+... +|.+ ++.....+++.+++++++.+
T Consensus 141 ~di~~ad~il~~G~n~~~~--~p~~~~~~~~a~~~~~~~~v~~~~~~ 185 (472)
T cd02771 141 RDIESADAVLVLGEDLTQT--APRIALALRQAARRKAVELAALSGIP 185 (472)
T ss_pred HHHHhCCEEEEEeCCcccc--chHHHHHHHHHHHcCCcEEEEcCCCc
Confidence 3567899999999987663 2321 11111234455665555543
No 123
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.86 E-value=26 Score=39.57 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=38.2
Q ss_pred HHHhcCCeeEEEcccccccccc--cccccCCCCccCCCeEEEEcCCCCCCCc-ccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKY--GWLWGLDRPKKERPKLCIVNLQWTPKDD-QATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~--~~~~~~~~~~~~~~~liiIN~~~t~~d~-~a~~~i 324 (504)
.++.+||++|+.|+-..+.... .....+..++.++.++|+|++..+.... .|++.|
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i 220 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWI 220 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEE
Confidence 4567899999999987664210 0111223355678899999999988775 677654
No 124
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.83 E-value=22 Score=39.52 Aligned_cols=54 Identities=26% Similarity=0.325 Sum_probs=37.9
Q ss_pred HHHhcCCeeEEEccccccccccccc-ccCCCCccC--CCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWL-WGLDRPKKE--RPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~-~~~~~~~~~--~~~liiIN~~~t~~d~~a~~~i 324 (504)
.++.+||++|++|+-..... |.. ..+..+..+ +.++|+|++..+.....|+..|
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~--~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l 209 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECH--PILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHL 209 (565)
T ss_pred HHHhhCCEEEEECCChhhhh--hHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeee
Confidence 35679999999999876541 211 112223344 8899999999999888888765
No 125
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=33.76 E-value=71 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.9
Q ss_pred HHHHHhcCCeeEEEccccc
Q psy10043 267 ANKNADRADLILCVGSSLK 285 (504)
Q Consensus 267 a~~~~~~aDllLVvGTSL~ 285 (504)
+.+.+++||++|++||++.
T Consensus 280 ~~~~l~~aD~vl~vG~~l~ 298 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPT 298 (568)
T ss_pred hhhhcCCCCEEEEeCCCCC
Confidence 4466789999999999984
No 126
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.73 E-value=22 Score=41.53 Aligned_cols=56 Identities=9% Similarity=0.015 Sum_probs=39.6
Q ss_pred HHHhcCCeeEEEcccccccccccc-cccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGW-LWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~-~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.++.+||++|++|+...... .+. ...+..+..++.++|+|++..+.....|+..|.
T Consensus 169 ~D~~~ad~Il~~G~Np~~s~-~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlp 225 (760)
T cd02760 169 ADTPLANYVISFGSNVEASG-GPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVP 225 (760)
T ss_pred chHhcCCEEEEECCCchHhc-CcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeC
Confidence 45679999999999975431 111 112223455788999999999998888887764
No 127
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=32.60 E-value=21 Score=28.91 Aligned_cols=36 Identities=28% Similarity=0.549 Sum_probs=25.0
Q ss_pred ccCCccceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCc
Q psy10043 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPL 245 (504)
Q Consensus 199 ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~L 245 (504)
+.+|.+-...|..|+...- .|+. ..+.-+| .||..|
T Consensus 12 ~p~s~Fl~VkCpdC~N~q~---vFsh--------ast~V~C~~CG~~l 48 (67)
T COG2051 12 EPRSRFLRVKCPDCGNEQV---VFSH--------ASTVVTCLICGTTL 48 (67)
T ss_pred CCCceEEEEECCCCCCEEE---Eecc--------CceEEEecccccEE
Confidence 7889999999999996421 2322 2345689 998653
No 128
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=32.45 E-value=29 Score=30.90 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=17.9
Q ss_pred HHHHHHhcCCeeEEEcccccc
Q psy10043 266 GANKNADRADLILCVGSSLKV 286 (504)
Q Consensus 266 ~a~~~~~~aDllLVvGTSL~V 286 (504)
.+.+.+++||++|++||++.-
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~~ 90 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLSD 90 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSST
T ss_pred HHHHHhcCCCEEEEECCCCcc
Confidence 566778999999999999855
No 129
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=32.29 E-value=22 Score=41.65 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=35.7
Q ss_pred HHHHhcCCeeEEEccccccccccccc--ccCCCCccCCCeEEEEcCCCCCC-Ccccceee
Q psy10043 268 NKNADRADLILCVGSSLKVLRKYGWL--WGLDRPKKERPKLCIVNLQWTPK-DDQATLKI 324 (504)
Q Consensus 268 ~~~~~~aDllLVvGTSL~V~~~~~~~--~~~~~~~~~~~~liiIN~~~t~~-d~~a~~~i 324 (504)
.+++.+||++|++|+..... .|.. ++.....+++.++++||+..+.. ...++..+
T Consensus 371 ~~Die~ad~ill~G~N~~~~--~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l 428 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEE--SPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLL 428 (797)
T ss_pred HHHHHhCCEEEEEeCChhhh--hHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhcee
Confidence 45678999999999987764 2322 22222235788999999987763 33445443
No 130
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=32.22 E-value=12 Score=39.65 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHhcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.++.+||++|++|+..................+++.++|.|++..+.....++..|.
T Consensus 107 ~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~ 163 (432)
T PF00384_consen 107 EDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIP 163 (432)
T ss_dssp HGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEE
T ss_pred ceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhcccccc
Confidence 367899999999998766521111122233556679999999998876666776554
No 131
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=31.91 E-value=22 Score=41.22 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=37.8
Q ss_pred HHhcCCeeEEEcccccccccccccccCCCCc-cCCCeEEEEcCCCCCCCcccceee
Q psy10043 270 NADRADLILCVGSSLKVLRKYGWLWGLDRPK-KERPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 270 ~~~~aDllLVvGTSL~V~~~~~~~~~~~~~~-~~~~~liiIN~~~t~~d~~a~~~i 324 (504)
++.+||+||++|+-..+....+....+..++ .++.++|+|++..+.....+++.|
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l 248 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWH 248 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeee
Confidence 4679999999999876531111111122333 578899999999998888888664
No 132
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=31.38 E-value=79 Score=32.84 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=51.5
Q ss_pred cccccccCChHHHHHHHHHHHHHHHhCCcEEEEccCCcccccccCCcccccchhhhhhcccccccccccCCChHHHHHHH
Q psy10043 24 SRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKC 103 (504)
Q Consensus 24 ~~~~e~~~~~~~~~~~~~~l~~~l~~~~~ivv~TGAGiS~~SGiPdfR~~~g~Wr~~kpe~laS~l~efeDdPe~l~eki 103 (504)
++-+.+..||...+..-.+..+.|-++.++||..|.| |||..+..+| +.. .++..|.- ...
T Consensus 157 rG~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGG-----GIPVv~~~~~-~~G---------VeAVIDKD----las 217 (312)
T COG0549 157 RGYRRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGG-----GIPVVEEGAG-LQG---------VEAVIDKD----LAS 217 (312)
T ss_pred CCeeEecCCCCCccchhHHHHHHHHhCCCEEEEeCCC-----CcceEecCCC-cce---------eeEEEccH----HHH
Confidence 3345678888887765556666777789999999988 8999998876 221 23332221 111
Q ss_pred HHHHHHHHhccceeeecCC
Q psy10043 104 KQLAEAIQNAKHVVVYTGA 122 (504)
Q Consensus 104 ~~LaelI~~Ak~iVV~TGA 122 (504)
..|++. -+|.-++++|+.
T Consensus 218 alLA~~-i~AD~liILTdV 235 (312)
T COG0549 218 ALLAEQ-IDADLLIILTDV 235 (312)
T ss_pred HHHHHH-hcCCEEEEEecc
Confidence 234443 468889999864
No 133
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=31.24 E-value=24 Score=40.03 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHHhcCCeeEEEcccccccccccc-cccCCCCccCCCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGW-LWGLDRPKKERPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~-~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i 324 (504)
.++.+||++|++|+..... .|. ...+..+.+++.++++|++..+.....++..|
T Consensus 151 ~di~~ad~il~~G~n~~~~--~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i 205 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAES--HPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHI 205 (671)
T ss_pred HHHHhCCEEEEECCChhhc--cCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCccc
Confidence 3577899999999987654 221 12223345678899999999988777777654
No 134
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=31.11 E-value=62 Score=34.14 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=35.6
Q ss_pred hcCCeeEEEcccccccccccccc----cC-----CCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 272 DRADLILCVGSSLKVLRKYGWLW----GL-----DRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 272 ~~aDllLVvGTSL~V~~~~~~~~----~~-----~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.+||++|++|+-..+. .|... .. ....+++.++++|++..+.....++..+.
T Consensus 130 ~~ad~il~~G~n~~~~--~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~ 190 (415)
T cd02761 130 NRADVIVYWGTNPMHA--HPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQ 190 (415)
T ss_pred hcCCEEEEEcCCcccc--ccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEe
Confidence 4799999999987764 23221 00 11124567999999999888777776654
No 135
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=30.63 E-value=32 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=17.0
Q ss_pred ceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCC
Q psy10043 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEP 244 (504)
Q Consensus 205 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~ 244 (504)
...+|.+|+....+. . .....+| .||+.
T Consensus 2 ~~y~C~~CG~~~~~~------~------~~~~~~Cp~CG~~ 30 (46)
T PRK00398 2 AEYKCARCGREVELD------E------YGTGVRCPYCGYR 30 (46)
T ss_pred CEEECCCCCCEEEEC------C------CCCceECCCCCCe
Confidence 356899999753221 1 1125689 99974
No 136
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.32 E-value=82 Score=26.27 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.8
Q ss_pred CchhHHHHHHHHHhhhhccccccccccCChHHHHHHHHHHHHHHHh
Q psy10043 4 DSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQN 49 (504)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~l~~ 49 (504)
+.+..++.|++|+++.+......|.+..++++.+..++.+.+-++.
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999988887777766553
No 137
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=30.10 E-value=97 Score=32.42 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.4
Q ss_pred CcccEEEecCHHHHHHHHHHHcC
Q psy10043 362 DQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 362 ~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
+.+|+-|-||.=+++++|.+++.
T Consensus 290 ~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 290 QYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred hhCCeeEeeeHHHHHHHHHHHhh
Confidence 56899999999999999999863
No 138
>PF13678 Peptidase_M85: NFkB-p65-degrading zinc protease
Probab=29.73 E-value=47 Score=33.34 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=25.0
Q ss_pred ecCHHHHHHHHHHHcCCCCCCCcCCCCc
Q psy10043 369 NGKCDVVFKQLMAHLNLDIPAYDKRRDP 396 (504)
Q Consensus 369 ~g~cD~v~~~L~~~Lg~~ip~~~~~~d~ 396 (504)
+|..+-..+++|.+|||.||.+..-.||
T Consensus 179 lGPTEILA~rVa~El~w~IP~F~~Y~~p 206 (250)
T PF13678_consen 179 LGPTEILAQRVAQELGWNIPDFKGYADP 206 (250)
T ss_pred cChHHHHHHHHHHHcCCCCccccCcCCH
Confidence 5999999999999999999998766666
No 139
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=29.58 E-value=95 Score=33.11 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=20.7
Q ss_pred CcccEEEecCHHHHHHHHHHHcC
Q psy10043 362 DQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 362 ~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
.++|+-|-||.=+++++|.++|.
T Consensus 331 ~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 331 QVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred hhcCeeEeeeHHHHHHHHHHHHH
Confidence 56899999999999999999875
No 140
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=29.48 E-value=97 Score=32.40 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred CcccEEEecCHHHHHHHHHHHcC
Q psy10043 362 DQATLKINGKCDVVFKQLMAHLN 384 (504)
Q Consensus 362 ~~adl~i~g~cD~v~~~L~~~Lg 384 (504)
+.+|+-|-||.=+++++|.+.|.
T Consensus 289 ~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 289 NYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred hhCCeeEeeeHHHHHHHHHHHhh
Confidence 56899999999999999998863
No 141
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=29.03 E-value=28 Score=33.35 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=20.7
Q ss_pred eeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccc
Q psy10043 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLD 247 (504)
Q Consensus 206 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP 247 (504)
...|+.|+..+.+. + +. .....| .||+.|..
T Consensus 117 ~Y~Cp~C~~rytf~------e--A~---~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 117 FFFCPNCHIRFTFD------E--AM---EYGFRCPQCGEMLEE 148 (178)
T ss_pred EEECCCCCcEEeHH------H--Hh---hcCCcCCCCCCCCee
Confidence 45899999754322 1 11 236789 99999876
No 142
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=28.75 E-value=32 Score=23.99 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=17.9
Q ss_pred eeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCc
Q psy10043 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPL 245 (504)
Q Consensus 206 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~L 245 (504)
...|++|+..+. +... .+.......+| +|+..+
T Consensus 2 ~~~CP~C~~~~~------v~~~-~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 2 RIQCPNCKTSFR------VVDS-QLGANGGKVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEEE------eCHH-HcCCCCCEEECCCCCCEE
Confidence 368999997522 2111 11112224679 998765
No 143
>PRK04940 hypothetical protein; Provisional
Probab=28.63 E-value=34 Score=32.91 Aligned_cols=63 Identities=16% Similarity=-0.043 Sum_probs=35.1
Q ss_pred cccEEEecCCCC-CCChhhHHHHHHHHhc----C--CeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCCCC
Q psy10043 246 LDTIIHFGEKGV-LLWPLNWDGANKNADR----A--DLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPK 316 (504)
Q Consensus 246 rP~IV~FGE~~~-~~~~~~~~~a~~~~~~----a--DllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t~~ 316 (504)
.|++-+. .++ ..+...+....+.+.+ . +=+++|||||== |=+.|+ +...+-+-++||+--.+.
T Consensus 26 ~p~~~~~--~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGG---yyA~~L---a~~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 26 DPDVRLI--SYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGG---YWAERI---GFLCGIRQVIFNPNLFPE 95 (180)
T ss_pred CCCCeEE--ECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHH---HHHHHH---HHHHCCCEEEECCCCChH
Confidence 5777665 333 3344445544444431 2 457899999843 222333 223455668999876553
No 144
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=28.38 E-value=40 Score=39.68 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHhcCCeeEEEcccccccccccccccCC-CCccCCCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLD-RPKKERPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~-~~~~~~~~liiIN~~~t~~d~~a~~~i 324 (504)
+.+.+||++|++|+...+.....+.++.. +...++.++|+|++..+.....|++.|
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~l 258 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIGI 258 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCeee
Confidence 46789999999999876641111112211 112368899999999888877777654
No 145
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=28.35 E-value=37 Score=29.35 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=23.4
Q ss_pred hcCCeeEEEcccccccccccccccCCCCccCCCeEEEEcCCCC
Q psy10043 272 DRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWT 314 (504)
Q Consensus 272 ~~aDllLVvGTSL~V~~~~~~~~~~~~~~~~~~~liiIN~~~t 314 (504)
.+|||+||.|+|+-= .+.-.|.+++|+..+..
T Consensus 39 ~dAeLviV~G~sipn-----------d~~l~GKkv~i~d~~~A 70 (103)
T COG3925 39 NDAELVIVFGSSIPN-----------DSALNGKKVWIGDIERA 70 (103)
T ss_pred CcccEEEEeccccCC-----------CccccCceEEEecHHHH
Confidence 579999999999733 24456778888776644
No 146
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=28.13 E-value=36 Score=39.99 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=37.1
Q ss_pred HHHhcCCeeEEEcccccccccccccccCC-CCccCCCeEEEEcCCCCCCCcccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLWGLD-RPKKERPKLCIVNLQWTPKDDQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~~~~-~~~~~~~~liiIN~~~t~~d~~a~~~i 324 (504)
+.+.+||++|++|+...+.....+..+.. +...++.++|+|++..+.....+++.|
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l 258 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGI 258 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeee
Confidence 46789999999999876531111111111 112467899999999888877777654
No 147
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.96 E-value=27 Score=38.73 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHhcCCeeEEEcccccccc-cccccccCCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 270 NADRADLILCVGSSLKVLR-KYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 270 ~~~~aDllLVvGTSL~V~~-~~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
++.+||+||++|+.....- ..+....+..++.++.++|+|++..+.....|+..|.
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~ 215 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLP 215 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeC
Confidence 4579999999998865421 0111111112345789999999999988888887664
No 148
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.54 E-value=1.5e+02 Score=34.33 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=17.0
Q ss_pred hHHHHHHHHhcCCeeEEEccccc
Q psy10043 263 NWDGANKNADRADLILCVGSSLK 285 (504)
Q Consensus 263 ~~~~a~~~~~~aDllLVvGTSL~ 285 (504)
..+.+.+.+.+-+.=|+|||.+.
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhh
Confidence 35566777877777788999873
No 149
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.19 E-value=37 Score=22.01 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=7.3
Q ss_pred eeeccCCCCC
Q psy10043 206 VEVCAHCDPV 215 (504)
Q Consensus 206 ~~~C~~C~~~ 215 (504)
...|++|+..
T Consensus 2 ~~~Cp~Cg~~ 11 (26)
T PF13248_consen 2 EMFCPNCGAE 11 (26)
T ss_pred cCCCcccCCc
Confidence 3579999963
No 150
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.82 E-value=43 Score=37.77 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHh-cCCeeEEEccccccccccccc---------ccCCCCccCCCeEEEEcCCCCCCCc-ccceeec
Q psy10043 270 NAD-RADLILCVGSSLKVLRKYGWL---------WGLDRPKKERPKLCIVNLQWTPKDD-QATLKIN 325 (504)
Q Consensus 270 ~~~-~aDllLVvGTSL~V~~~~~~~---------~~~~~~~~~~~~liiIN~~~t~~d~-~a~~~i~ 325 (504)
.+. +||+||++|+...... +.. ..+..++.++.++|+|++..+.... .|++.|.
T Consensus 165 D~~~~ad~il~wG~N~~~~~--~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 165 DIAEHSDLVVLFGANPLKTR--QGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred hHHhcCCEEEEECCCHHHhc--CCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 344 5999999999876542 211 2233455678899999999988876 6787653
No 151
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=26.66 E-value=32 Score=40.83 Aligned_cols=37 Identities=32% Similarity=0.760 Sum_probs=24.9
Q ss_pred ccCCccc-----eeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccE
Q psy10043 199 EVHGNMS-----VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTI 249 (504)
Q Consensus 199 ElHG~l~-----~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~I 249 (504)
.|-||++ ..+|++|+.. |.|. ...-.| +|||.+-++|
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~k--YRR~------------PL~G~C~kCGg~lilTV 1042 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTK--YRRI------------PLVGKCLKCGNNLTLTV 1042 (1095)
T ss_pred HhhhhHhhhhccceeecccCCc--cccC------------CCCCcccccCCeEEEEE
Confidence 3559987 4589999975 3221 123579 9999877654
No 152
>PRK06260 threonine synthase; Validated
Probab=25.93 E-value=43 Score=35.80 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.1
Q ss_pred cceeeccCCCCC
Q psy10043 204 MSVEVCAHCDPV 215 (504)
Q Consensus 204 l~~~~C~~C~~~ 215 (504)
|+..+|..|+..
T Consensus 1 ~~~~~C~~cg~~ 12 (397)
T PRK06260 1 MYWLKCIECGKE 12 (397)
T ss_pred CCEEEECCCCCC
Confidence 356889999964
No 153
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=25.68 E-value=30 Score=32.37 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=20.1
Q ss_pred ceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccc
Q psy10043 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLD 247 (504)
Q Consensus 205 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP 247 (504)
....|+.|+..+.+. + +. .....| .||+.|..
T Consensus 108 ~~Y~Cp~c~~r~tf~------e--A~---~~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 108 MFFICPNMCVRFTFN------E--AM---ELNFTCPRCGAMLDY 140 (158)
T ss_pred CeEECCCCCcEeeHH------H--HH---HcCCcCCCCCCEeee
Confidence 346899999754322 1 11 136789 99998653
No 154
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=25.14 E-value=43 Score=38.98 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHhcCCeeEEEccccccccc--ccc-cccCCCCccCCCeEEEEcCCCCCCC-cccceee
Q psy10043 269 KNADRADLILCVGSSLKVLRK--YGW-LWGLDRPKKERPKLCIVNLQWTPKD-DQATLKI 324 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~--~~~-~~~~~~~~~~~~~liiIN~~~t~~d-~~a~~~i 324 (504)
.++.+||++|++|+...+... ... ..+......++.+||+|++..+... ..|+..|
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l 269 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWI 269 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEE
Confidence 457889999999999876511 011 1122222356889999999988764 3677653
No 155
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=25.12 E-value=46 Score=36.83 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHhcCCeeEEEccccccccccc--ccccCCCCccCC-----CeEEEEcCCCCCCCcccceeec
Q psy10043 270 NADRADLILCVGSSLKVLRKYG--WLWGLDRPKKER-----PKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 270 ~~~~aDllLVvGTSL~V~~~~~--~~~~~~~~~~~~-----~~liiIN~~~t~~d~~a~~~i~ 325 (504)
++.+||++|++|+.....-..+ ....+...++++ .++++|++..+.....+++.+.
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~ 255 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLA 255 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceec
Confidence 4679999999999876541001 111111222333 4999999999998888887764
No 156
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=24.76 E-value=38 Score=39.96 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=46.6
Q ss_pred HHHhcCCeeEEEcccccccccccccc-cCCCCccCCCeEEEEcCCCCCCCcccceeecCCCcchhccccccCCCCCCCCC
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWLW-GLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKER 347 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~~-~~~~~~~~~~~liiIN~~~t~~d~~a~~~i~~~~p~~~~~~~~~~~~~~~~~~ 347 (504)
..+.+||++|++|+.+... +|.++ .+.++..++.++++|++..+..... ++. .......
T Consensus 367 ~di~~ad~Ilv~G~N~~~~--~p~~~~~i~~a~~~gaklividpr~~~~~~~---------~~~---------~~g~~~~ 426 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQT--AARVALAVRQAVKGKAREMAAAQKVADWQIA---------AVR---------NIGQRAK 426 (847)
T ss_pred HHHHhCCEEEEEeCChHHh--hHHHHHHHHHHHHcCCceEeeccccccchhh---------hhh---------hcccccC
Confidence 4567899999999998763 23221 1233455778998888654321100 000 0001122
Q ss_pred CceEEeccccCCCCCcccEEEec
Q psy10043 348 PKLCIVNLQWTPKDDQATLKING 370 (504)
Q Consensus 348 ~~l~ivN~q~t~~d~~adl~i~g 370 (504)
.++++++...|.....+|+.+.-
T Consensus 427 ~~l~vv~~~~t~~a~~Ad~~l~~ 449 (847)
T PRK08166 427 SPLFITNVDETRLDDIAAWTYRA 449 (847)
T ss_pred cceEEecCchhhHHHHHhhhhcC
Confidence 35788888777766667765543
No 157
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=24.22 E-value=40 Score=35.81 Aligned_cols=45 Identities=31% Similarity=0.395 Sum_probs=31.0
Q ss_pred HHHHHhcCCeeEEEccccccccccccccc-CCCC-ccCCCeEEEEcCCC
Q psy10043 267 ANKNADRADLILCVGSSLKVLRKYGWLWG-LDRP-KKERPKLCIVNLQW 313 (504)
Q Consensus 267 a~~~~~~aDllLVvGTSL~V~~~~~~~~~-~~~~-~~~~~~liiIN~~~ 313 (504)
.++.+++||++|+|||-+... .|.+.. +.++ .+.+.++++|++..
T Consensus 142 sl~die~ad~illiG~n~~~e--~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 142 SLKNLDKSDLCLLIGSNLRVE--SPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CHHHHhhCCEEEEEcCCcchh--hHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 345788999999999999886 444322 1122 24467899998766
No 158
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.58 E-value=99 Score=36.11 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCCceEEeccccCCCCCcccEEEecCHHHHHHHHHH-HcCCCCCCCcC
Q psy10043 346 ERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMA-HLNLDIPAYDK 392 (504)
Q Consensus 346 ~~~~l~ivN~q~t~~d~~adl~i~g~cD~v~~~L~~-~Lg~~ip~~~~ 392 (504)
..+.++|-..++ ........+.+|.+.+.++=|+ +=-...|+|.+
T Consensus 592 ~~G~VvIQT~~P--~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~ 637 (730)
T COG1198 592 KPGEVVIQTYNP--DHPAIQALKRGDYEAFYEQELAERKELGLPPFSR 637 (730)
T ss_pred CCCeEEEEeCCC--CcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhh
Confidence 445667765544 2222345567788887776553 22344788875
No 159
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=23.53 E-value=95 Score=32.72 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=34.6
Q ss_pred hcCCeeEEEcccccccccccccc--c-------CCCCccCCCeEEEEcCCCCCCCcccceeec
Q psy10043 272 DRADLILCVGSSLKVLRKYGWLW--G-------LDRPKKERPKLCIVNLQWTPKDDQATLKIN 325 (504)
Q Consensus 272 ~~aDllLVvGTSL~V~~~~~~~~--~-------~~~~~~~~~~liiIN~~~t~~d~~a~~~i~ 325 (504)
.+||++|++|+..... +|... + ......++.++++|++..+.....++..+.
T Consensus 136 ~~ad~il~~G~n~~~~--~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHA--HPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCcccc--CchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 3699999999987653 22111 0 011114667999999999888777776553
No 160
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=23.41 E-value=49 Score=34.75 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=30.1
Q ss_pred HHHhcCCeeEEEccccccccccccc--ccCCCCccCCCeEEEEcCCCCCCCc
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGWL--WGLDRPKKERPKLCIVNLQWTPKDD 318 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~~--~~~~~~~~~~~~liiIN~~~t~~d~ 318 (504)
..+.+||++|++|+-.... .|.+ ++.....+++.++++|++..+....
T Consensus 141 ~di~~ad~il~~G~N~~~~--~p~~~~~~~~~~~~~g~kli~idp~~~~t~~ 190 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFE--APVLNARIRKAWLHGGLKVGVIGPPVDLTYD 190 (375)
T ss_pred HHHhhCCEEEEEcCCcchh--chHHHHHHHHHHHcCCCEEEEEcCccccchh
Confidence 3568899999999987543 2222 1111123457899999887655433
No 161
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.10 E-value=42 Score=40.16 Aligned_cols=37 Identities=32% Similarity=0.700 Sum_probs=25.1
Q ss_pred ccCCccc-----eeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccE
Q psy10043 199 EVHGNMS-----VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTI 249 (504)
Q Consensus 199 ElHG~l~-----~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~I 249 (504)
.|-||++ ..+|++|+.. |.|. ...-.| +|||.+-++|
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~k--YRR~------------PL~G~C~kCGg~lilTV 1067 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAK--YRRP------------PLSGKCPKCGGNLILTV 1067 (1121)
T ss_pred hhhhhhhhhcccceeecccCcc--cccC------------CCCCcCccCCCeEEEEE
Confidence 3559987 4589999975 3221 123579 9999987764
No 162
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.90 E-value=42 Score=41.08 Aligned_cols=37 Identities=32% Similarity=0.714 Sum_probs=24.9
Q ss_pred ccCCccc-----eeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCccccE
Q psy10043 199 EVHGNMS-----VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTI 249 (504)
Q Consensus 199 ElHG~l~-----~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~LrP~I 249 (504)
.|-||++ ..+|++|+.. |.|. ...-.| +|||.+-++|
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~k--yRR~------------PL~G~C~kCGg~iilTv 1283 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTK--YRRM------------PLAGKCRKCGGRIILTV 1283 (1337)
T ss_pred hhhhhhhhhhccceeecccCcc--cccC------------CCCCcccccCCeEEEEE
Confidence 4559987 4589999975 3221 123579 9999877654
No 163
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.87 E-value=92 Score=29.93 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCcccc
Q psy10043 34 EVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64 (504)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~ivv~TGAGiS~~ 64 (504)
+.+++.++.+++.+.++++|.++ |.|-|..
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~-G~G~S~~ 56 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC-GNGGSAA 56 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE-eCcHhHH
Confidence 55678888999999999998887 9887753
No 164
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.64 E-value=50 Score=37.38 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=35.2
Q ss_pred HHhcCCeeEEEccccccccc--------ccccccCCCCccCCCeEEEEcCCCCCCCcccc
Q psy10043 270 NADRADLILCVGSSLKVLRK--------YGWLWGLDRPKKERPKLCIVNLQWTPKDDQAT 321 (504)
Q Consensus 270 ~~~~aDllLVvGTSL~V~~~--------~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a~ 321 (504)
.+.+||++|+.|+-..+... .+....+..++.++.+||+|++..+.....++
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~ad 226 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELG 226 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhc
Confidence 35799999999998665310 01111122355678999999999998877664
No 165
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=21.94 E-value=48 Score=38.63 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHhcCCeeEEEcccccccccccc-cccCCCCccCCCeEEEEcCCCCC
Q psy10043 269 KNADRADLILCVGSSLKVLRKYGW-LWGLDRPKKERPKLCIVNLQWTP 315 (504)
Q Consensus 269 ~~~~~aDllLVvGTSL~V~~~~~~-~~~~~~~~~~~~~liiIN~~~t~ 315 (504)
+++.+||++|++|+-.... .|. ...+..+++++.+||+||+..+.
T Consensus 194 ~Di~~ad~Il~~G~Np~~~--~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTN--HPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccc--cHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 4677999999999987654 222 22233466788999999997654
No 166
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.79 E-value=54 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.559 Sum_probs=17.4
Q ss_pred eeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCC
Q psy10043 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEP 244 (504)
Q Consensus 206 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~ 244 (504)
...|.+|+..+ .+.+. .+......-+| +|+..
T Consensus 2 ~i~Cp~C~~~y------~i~d~-~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 2 IITCPNCQAKY------EIDDE-KIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EEECCCCCCEE------eCCHH-HCCCCCcEEECCCCCCE
Confidence 35799999753 33221 12223334578 88764
No 167
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=21.76 E-value=1.7e+02 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhccceeeecCCCcccCC
Q psy10043 97 EILAAKCKQLAEAIQNAKHVVVYTGAGISTAA 128 (504)
Q Consensus 97 e~l~eki~~LaelI~~Ak~iVV~TGAGISt~S 128 (504)
..++..+..+.-+.+....+|+.||||++...
T Consensus 76 ~~l~~~~~~~~il~r~rPdvii~nGpg~~vp~ 107 (170)
T PF08660_consen 76 TTLRAFLQSLRILRRERPDVIISNGPGTCVPV 107 (170)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCceeeHH
Confidence 34445556666666777899999999988754
No 168
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=21.35 E-value=55 Score=38.07 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=36.2
Q ss_pred HhcCCeeEEEccccccccc-------ccccccCCCCccCCCeEEEEcCCCCCCCccc-cee
Q psy10043 271 ADRADLILCVGSSLKVLRK-------YGWLWGLDRPKKERPKLCIVNLQWTPKDDQA-TLK 323 (504)
Q Consensus 271 ~~~aDllLVvGTSL~V~~~-------~~~~~~~~~~~~~~~~liiIN~~~t~~d~~a-~~~ 323 (504)
+.+||++|+.|+...+... .+....+..+++++.++|+|++..+.....+ ++.
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~ 225 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEW 225 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeE
Confidence 5789999999999766411 0111122235567899999999999887764 554
No 169
>PRK12496 hypothetical protein; Provisional
Probab=20.99 E-value=58 Score=30.71 Aligned_cols=52 Identities=13% Similarity=0.403 Sum_probs=27.9
Q ss_pred EEe--ecchhhhhhcCCCCCCccccCCc------cceeeccCCCCCcccccccchhhhhhhhhccCCCCC-CCCCCcc
Q psy10043 178 VVS--QNCDDLHLRSGLPRSVLSEVHGN------MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLL 246 (504)
Q Consensus 178 viT--QNIDgLh~rAG~~~~~viElHG~------l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~P~C-~Cgg~Lr 246 (504)
++| .++-..-..-|++ +..+|+. -...+|..|+.. |+.. ...-.| .||..++
T Consensus 94 lvtDD~~~~~vA~~lgi~---v~~~~~~~i~~~~~w~~~C~gC~~~------~~~~--------~~~~~C~~CG~~~~ 154 (164)
T PRK12496 94 LYTDDYGIQNVAKKLNIK---FENIKTKGIKKVIKWRKVCKGCKKK------YPED--------YPDDVCEICGSPVK 154 (164)
T ss_pred EECcHHHHHHHHHHcCCe---EeccccccchhheeeeEECCCCCcc------ccCC--------CCCCcCCCCCChhh
Confidence 455 2333444455663 5555521 124579999964 2211 112369 9998865
No 170
>KOG1680|consensus
Probab=20.47 E-value=1.1e+02 Score=31.46 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.9
Q ss_pred CCcEEEEccCCccccccc
Q psy10043 50 AKHVVVYTGAGISTAAKI 67 (504)
Q Consensus 50 ~~~ivv~TGAGiS~~SGi 67 (504)
+-.++||||+|-|.+||-
T Consensus 81 s~~viVltG~gksFcsG~ 98 (290)
T KOG1680|consen 81 SVGVIVLTGSGKSFCSGA 98 (290)
T ss_pred cccEEEEEcCCCcccccc
Confidence 566999999999999985
No 171
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=20.04 E-value=71 Score=37.41 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=37.4
Q ss_pred HHHHhcCCeeEEEccccccccccc--ccccCCCCc-cCCCeEEEEcCCCCCCCc-ccceee
Q psy10043 268 NKNADRADLILCVGSSLKVLRKYG--WLWGLDRPK-KERPKLCIVNLQWTPKDD-QATLKI 324 (504)
Q Consensus 268 ~~~~~~aDllLVvGTSL~V~~~~~--~~~~~~~~~-~~~~~liiIN~~~t~~d~-~a~~~i 324 (504)
..++.+||++|++|+...+..... +...+..++ +++.++|+|++..+.... .|+..|
T Consensus 226 ~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l 286 (814)
T PRK14990 226 PSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWI 286 (814)
T ss_pred HHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEE
Confidence 346778999999999977641110 111122233 467899999999888763 677654
Done!