RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10043
(504 letters)
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 285 bits (731), Expect = 1e-94
Identities = 108/217 (49%), Positives = 133/217 (61%), Gaps = 14/217 (6%)
Query: 114 KHVVVYTGAGISTAAKIPDYRGTKGIWTLLQ--QGKDIGNHDLSLAEPTLTHMALYKLYR 171
KH+VV+TGAGIST+A IPD+RG G+WTLL +G+ + AEPTLTHMAL +L R
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELER 60
Query: 172 HGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARY 231
G +K V+SQN D LHLRSGLPR LSE+HGNM +EVC C P V + R
Sbjct: 61 AGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVE-----TRG 115
Query: 232 AHQTARKCS-CGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKY 290
+T R+C CG L DTI+ FGE+ L P NW GA A RADL LC+G+SL+V
Sbjct: 116 DKETGRRCHACGGILKDTIVDFGER---LPPENWMGAAAAACRADLFLCLGTSLQV---T 169
Query: 291 GWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGK 327
+ + +L IVNLQ TPKD A L I+G
Sbjct: 170 PAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHGD 206
Score = 52.3 bits (126), Expect = 1e-07
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 51 KHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSR 88
KH+VV+TGAGIST+A IPD+R ++ L +K + R
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRR 38
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 191 bits (487), Expect = 4e-58
Identities = 71/233 (30%), Positives = 103/233 (44%), Gaps = 34/233 (14%)
Query: 114 KHVVVYTGAGISTAAKIPDYRGTKGIWTLLQ----------QGKDIG--------NHDLS 155
K +VV TGAGIST + IPD+R G+W L +D
Sbjct: 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRYPL 60
Query: 156 LAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPV 215
A+P H AL +L R G +K V++QN D LH R+G P+ + E+HG++ C C
Sbjct: 61 NAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSPK--VIELHGSLFRVRCTKCGKE 118
Query: 216 KYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRA 274
+ A + +C CG L ++ FGE P D A + +A
Sbjct: 119 YPRDELQ------ADIDREEVPRCPKCGGLLRPDVVFFGESL----PEELDEAAEALAKA 168
Query: 275 DLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGK 327
DL+L +G+SL+V Y + + I+NL+ TP D +A L I G
Sbjct: 169 DLLLVIGTSLQV---YPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILGD 218
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 161 bits (409), Expect = 1e-46
Identities = 75/236 (31%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 114 KHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQ-----GKDIGNHDLSL----------- 156
K VVV+TGAGIST + IPD+RG G+WT L + D L
Sbjct: 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRYT 60
Query: 157 ---AEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCD 213
A+P H AL +L R G +K +++QN D LH R+G R+ + E+HG++ C C
Sbjct: 61 PLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCG 120
Query: 214 PVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADR 273
V + + R CG L ++ FGE L +D A +
Sbjct: 121 KEYPRDEVLEREKP--------PRCPKCGGLLRPDVVDFGEA---LPKEWFDRALEALLE 169
Query: 274 ADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKD--DQATLKINGK 327
ADL+L +G+SL V Y L R + + I+N + TP D +A L I G
Sbjct: 170 ADLVLVIGTSLTV---YPAARLLLRAPERGAPVVIINREPTPADALKKADLVILGD 222
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 123 bits (311), Expect = 3e-32
Identities = 74/254 (29%), Positives = 112/254 (44%), Gaps = 55/254 (21%)
Query: 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHD----LSL- 156
+ ++LAE + AK +VV TGAGIS + IPD+R G+W H S
Sbjct: 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWE---------EHRPEDVASPE 52
Query: 157 ----------------------AEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPR 194
A+P H AL +L + G + V++QN D LH R+G +
Sbjct: 53 GFARDPELVWKFYNERRRQLLDAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAG-SK 111
Query: 195 SVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFG 253
+V+ E+HG++ C C + +D+ E Y +C CG L ++ FG
Sbjct: 112 NVI-ELHGSLLRARCTKCG------QTYDLDE----YLKPEPPRCPKCGGILRPDVVLFG 160
Query: 254 EKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQW 313
E +L L D A + + ADL + +G+SL V Y ++ K +NL+
Sbjct: 161 E---MLPELAIDEAYEALEEADLFIVIGTSLVV---YPAAGLPYEAREHGAKTVEINLEP 214
Query: 314 TPKDDQATLKINGK 327
TP D L I+GK
Sbjct: 215 TPLDSLFDLVIHGK 228
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 121 bits (305), Expect = 2e-31
Identities = 77/272 (28%), Positives = 116/272 (42%), Gaps = 56/272 (20%)
Query: 105 QLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHD----------- 153
++A+A++ AK +VV TGAGIS + IPD+R G+W+ +D+ +
Sbjct: 4 EVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWD 63
Query: 154 --------LSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMS 205
L LA+P H AL +L G + +++QN D LH R+G + E+HG++
Sbjct: 64 FYSERLRLLYLAQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVI--ELHGSLK 121
Query: 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDT-IIHFGEKGVLLWPLN 263
C+ C Y V E +C CG P+L ++ FGE PL
Sbjct: 122 RVRCSKCGNQYYDEDVIKFIE------DGLIPRCPKCGGPVLRPDVVWFGE------PLP 169
Query: 264 ---WDGANKNADRADLILCVGSSLKV------LRKYGWLWGLDRPKKERPKLCIVNLQWT 314
D A + ADL++ +G+SLKV K+ K+ +NL+ T
Sbjct: 170 ASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELA---------KRRGAKVIEINLEPT 220
Query: 315 PKDDQATLKINGKY-PVLRKYGWLWGLDRPKK 345
D A I G VL L L + K
Sbjct: 221 RLDPIADEVIRGDAGEVLPL--LLEELLKGLK 250
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 116 bits (293), Expect = 5e-30
Identities = 72/247 (29%), Positives = 104/247 (42%), Gaps = 54/247 (21%)
Query: 110 IQNAKHVVVYTGAGISTAAKIPDYRGTKGIWT--LLQQGKDIG--NHD------------ 153
+ ++ VV TGAGIST + IPD+R G+W ++ I +
Sbjct: 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEII 60
Query: 154 --LSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAH 211
L A+P H L +L + G +K +++QN D LH R+G ++V+ E+HG + C +
Sbjct: 61 LGLLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAG-SKNVI-ELHGTLQTAYCVN 118
Query: 212 CDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWD---GAN 268
C +D+ E H+ R CG + ++ FGE PL A
Sbjct: 119 CG------SKYDLEEVKYAKKHEVPRCPKCGGIIRPDVVLFGE------PLPQALLREAI 166
Query: 269 KNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERP--------KLCIVNLQWTPKDDQA 320
+ A ADL + +GSSL V P P KL IVN TP D A
Sbjct: 167 EAAKEADLFIVLGSSLVV-----------YPANLLPLIAKENGAKLVIVNADETPFDYIA 215
Query: 321 TLKINGK 327
L I K
Sbjct: 216 DLVIQDK 222
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 98.5 bits (246), Expect = 4e-24
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 35/189 (18%)
Query: 121 GAGISTAAKIPDYRGTKGIWT-----------------LLQQGKDIGN-HDLSL--AEPT 160
GAGIST + IPD+R G++ L +L A+P
Sbjct: 1 GAGISTESGIPDFRSDDGLYAKLAKEELASPEAFFSNPYLVWDPFYNIARELLPGPAQPN 60
Query: 161 LTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWR 220
H + +L G + +++QN D LH R+G + V E+HG+ + C C
Sbjct: 61 PAHYFIAELEDKGKLLRLITQNIDGLHERAGSKKVV--ELHGSFAKARCVSCHKKYTGET 118
Query: 221 VFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLN--WDGANKNADRADLIL 278
+ + + A + + CG L I+ FGE L + A ++ + ADL++
Sbjct: 119 LPERID-----AAKVPKCDKCGGLLKPDIVFFGE------NLPDKFFRAYEDVEEADLLI 167
Query: 279 CVGSSLKVL 287
+G+SLKV
Sbjct: 168 VIGTSLKVY 176
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 97.2 bits (242), Expect = 7e-23
Identities = 81/249 (32%), Positives = 113/249 (45%), Gaps = 50/249 (20%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGK-DI------------- 149
K+ E + ++ V TGAGIST + IPD+RG +GI+ Q DI
Sbjct: 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRF 61
Query: 150 ---GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSV 206
G + A+P L H+ L KL G ++ V++QN D LH ++G + + E+HGN+
Sbjct: 62 AKEGIFPMLEAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVI--ELHGNVEE 119
Query: 207 EVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLN-W 264
C C K Y V DV E + +C C + I+ FGE P +
Sbjct: 120 YYCVRCG--KRY-TVEDVIEKLEK---SDVPRCDDCSGLIRPNIVFFGEA----LPQDAL 169
Query: 265 DGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERP--------KLCIVNLQWTPK 316
A + + +A L++ +GSSL V P E P KL IVNL TP
Sbjct: 170 REAIRLSSKASLMIVMGSSLVVY-----------PAAELPLITVRSGGKLVIVNLGETPL 218
Query: 317 DDQATLKIN 325
DD ATLK N
Sbjct: 219 DDIATLKYN 227
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 94.3 bits (235), Expect = 8e-22
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 55/266 (20%)
Query: 106 LAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWT----LLQQGKDIGNHD-------- 153
L + + ++ ++V TGAGIST + IPDYR G+++ + + + +
Sbjct: 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWAR 60
Query: 154 -------LSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSV 206
S A+P H AL L G + +++QN D LH ++G + E+HG++
Sbjct: 61 SFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRN--VVELHGSLHR 118
Query: 207 EVCAHC----------DPVKY---YWR-----------VFDVTEHTARYAHQTARKCSCG 242
VC C D ++ + V E A + + CG
Sbjct: 119 VVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECER--CG 176
Query: 243 EPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKE 302
L ++ FGE + A AD +L +GSSL V Y ++ E
Sbjct: 177 GVLKPDVVFFGEN---VPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFV----LAAAE 229
Query: 303 RPK-LCIVNLQWTPKDDQATLKINGK 327
+ IVN+ T D ATLK++ +
Sbjct: 230 AGLPIAIVNIGPTRADHLATLKVDAR 255
Score = 41.9 bits (99), Expect = 4e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 43 LAEAIQNAKHVVVYTGAGISTAAKIPDYRS 72
L + + ++ ++V TGAGIST + IPDYRS
Sbjct: 1 LQDFVARSRRLLVLTGAGISTESGIPDYRS 30
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 85.7 bits (213), Expect = 4e-19
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 32/191 (16%)
Query: 114 KHVVVYTGAGISTAAKIPDYRGTKGIWT------------------LLQQGKDIGNHDLS 155
+ VVV TGAGIS + IP +R G+W L+ + +
Sbjct: 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATPEAFARDPELVWEFYNWRRRKAL 60
Query: 156 LAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPV 215
A+P H+AL +L R +++QN D LH R+G R+V+ E+HG++ C+ C V
Sbjct: 61 RAQPNPAHLALAELERRLPNVLLITQNVDGLHERAG-SRNVI-ELHGSLFRVRCSSCGYV 118
Query: 216 KYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRAD 275
E R CG L ++ FGE PL A + +AD
Sbjct: 119 GENNEEIPEEELP--------RCPKCGGLLRPGVVWFGES----LPLALLEAVEALAKAD 166
Query: 276 LILCVGSSLKV 286
L L +G+S V
Sbjct: 167 LFLVIGTSGVV 177
Score = 31.0 bits (71), Expect = 0.95
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 51 KHVVVYTGAGISTAAKIPDYR 71
+ VVV TGAGIS + IP +R
Sbjct: 1 RRVVVLTGAGISAESGIPTFR 21
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 85.4 bits (211), Expect = 1e-18
Identities = 69/235 (29%), Positives = 102/235 (43%), Gaps = 46/235 (19%)
Query: 73 NFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPD 132
N I+ KK+ K + LED LA+ I+ K+VV TG+G S + IP
Sbjct: 3 NLMIFFQKKVTKSIT----LED-----------LADMIRKCKYVVALTGSGTSAESNIPS 47
Query: 133 YRGTKG-------------IWTLLQQGKDIGN--HDLSLA---EPTLTHMALYKLYRHGF 174
+RG IW + + I D+S E H+AL L G+
Sbjct: 48 FRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEVIRDISSDYEIELNPGHVALSTLESLGY 107
Query: 175 VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQ 234
+K VV+QN D LH SG + + +HG++ C C ++ + + T+ + HQ
Sbjct: 108 LKFVVTQNVDGLHEESG--NTKVIPLHGSVFEARCCTCRKTIQLNKI--MLQKTSHFMHQ 163
Query: 235 TARKCSCGEPLLDTIIHFGE---KGVLLWPLNWDGANKNADRADLILCVGSSLKV 286
+C CG +I FGE K +L A K D+ DL+L VG+S V
Sbjct: 164 LPPECPCGGIFKPNVILFGEVIPKSLL------KQAEKEIDKCDLLLVVGTSSSV 212
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 78.2 bits (193), Expect = 2e-16
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 47/243 (19%)
Query: 106 LAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWT--LLQQGKDIGNHDLSL------- 156
L ++NAK +V +TGAG+STA+ IPDYR G++ + + +HD
Sbjct: 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFY 60
Query: 157 -----------AEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMS 205
A+P + H + +L + G V++QN D LH ++G ++V+ E HG++
Sbjct: 61 QFVKENLYFPDAKPNIIHQKMAELEKMGLKA-VITQNIDGLHQKAG-SKNVV-EFHGSLY 117
Query: 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLN-- 263
C C W + + + A CG + I+ + E LN
Sbjct: 118 RIYCTVCGK-TVDWEEYLKSPYHA----------KCGGVIRPDIVLYEE------MLNES 160
Query: 264 -WDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATL 322
+ A + ++ADL++ VG+S V Y + GL ++ L +N + T D ATL
Sbjct: 161 VIEEAIQAIEKADLLVIVGTSFVV---YPFA-GLIDYRQAGANLIAINKEPTQLDSPATL 216
Query: 323 KIN 325
I
Sbjct: 217 VIK 219
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 78.6 bits (194), Expect = 4e-16
Identities = 76/269 (28%), Positives = 105/269 (39%), Gaps = 66/269 (24%)
Query: 106 LAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQ-------QGKD---------- 148
L + ++ + V TGAGIST + IPDYR G W G D
Sbjct: 12 LQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSPPITYQAFMGSDAARRRYWARS 71
Query: 149 -IGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVE 207
+G A+P H AL +L G ++ +V+QN D LH R+G R V+ E+HG +
Sbjct: 72 MVGWPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAG-SRDVI-ELHGRLDGV 129
Query: 208 VCAHCD----------------PVKYYWRVFDVT---------EHTARYAHQTARKC-SC 241
C C P W + E A + H C +C
Sbjct: 130 RCMGCGARHPRAEIQHVLEAANP---EWLALEAAPAPDGDADLEWAA-FDHFRVPACPAC 185
Query: 242 GEPLLDTIIHFGE----KGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGW-LWGL 296
G L ++ FGE + V A D AD +L VGSSL V Y + +W
Sbjct: 186 GGILKPDVVFFGENVPRERV-------AAARAALDAADAVLVVGSSLMVYSGYRFCVWAA 238
Query: 297 DRPKKERPKLCIVNLQWTPKDDQATLKIN 325
+ K P + +NL T D TLK+
Sbjct: 239 QQGK---P-IAALNLGRTRADPLLTLKVE 263
Score = 38.5 bits (90), Expect = 0.005
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 32 EPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSN 73
P+ A L + ++ + V TGAGIST + IPDYR
Sbjct: 1 APDADPAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDR 42
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 76.8 bits (189), Expect = 7e-16
Identities = 58/200 (29%), Positives = 82/200 (41%), Gaps = 38/200 (19%)
Query: 110 IQNAKHVVVYTGAGISTAAKIPDYRGTKGIW------------------TLLQQ--GKDI 149
++ + + + TGAGIS + I +R G+W L+Q+ +
Sbjct: 1 MKACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDAFLRNPALVQRFYNERR 60
Query: 150 GNHDLSLAEPTLTHMALYKL---YRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSV 206
S +P H AL KL YR G V VV+QN D+LH R+G VL +HG
Sbjct: 61 RALLSSSVKPNKAHFALAKLEREYRGGKVV-VVTQNVDNLHERAG-STHVL-HMHG---- 113
Query: 207 EVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDG 266
E+ VFD TE + + + C C L I+ FGE PL D
Sbjct: 114 ELLKVRCTATG--HVFDWTEDVVHGSSR-CKCCGCVGTLRPHIVWFGEM-----PLYMDE 165
Query: 267 ANKNADRADLILCVGSSLKV 286
+ DL + VG+S V
Sbjct: 166 IESVMSKTDLFVAVGTSGNV 185
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 72.3 bits (178), Expect = 2e-14
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 47/204 (23%)
Query: 114 KHVVVYTGAGISTAAKIPDYR--GTKGIWTLLQQGKDIGNHDLSLAE------------- 158
K +VV GAGIST+A IPD+R GT G++ L + ++L E
Sbjct: 1 KKIVVLVGAGISTSAGIPDFRSPGT-GLYANLAR------YNLPYPEAMFDISYFRKNPR 53
Query: 159 ---------------PTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGN 203
P++ H + L G + +QN D L +G+P + E HG+
Sbjct: 54 PFYALAKELYPGQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGS 113
Query: 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLN 263
+ AHC +K + + + + CG + I+ FGE P
Sbjct: 114 FAT---AHC--IKCKHKYPGDWMREDIFNQEVPKCPRCGGLVKPDIVFFGES----LPSR 164
Query: 264 WDGANKN-ADRADLILCVGSSLKV 286
+ + + ADL++ +G+SLKV
Sbjct: 165 FFSHMEEDKEEADLLIVIGTSLKV 188
Score = 44.9 bits (107), Expect = 3e-05
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 51 KHVVVYTGAGISTAAKIPDYRSNFT-IY-RLKKIN 83
K +VV GAGIST+A IPD+RS T +Y L + N
Sbjct: 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYN 35
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 66.0 bits (161), Expect = 9e-12
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 38/209 (18%)
Query: 106 LAEAIQ--NAKHVVVYTGAGISTAAKIPDYRGT-KGIW-----------------TLLQQ 145
LA I+ N ++V GAGIS AA IPD+R GI+ TLL++
Sbjct: 20 LARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLRE 79
Query: 146 GKDIGNH---DLSL----AEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198
++ ++ L +PT H + L G + +QN D L +G+P S+L
Sbjct: 80 KPEVFYSIAREMDLWPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLV 139
Query: 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGEKGV 257
E HG+ S C C +D+ + CS CG + ++ FGE
Sbjct: 140 EAHGSFSAASCIECHT------PYDIEQAYLEARSGKVPHCSTCGGIVKPDVVFFGEN-- 191
Query: 258 LLWPLNWDGANKNADRADLILCVGSSLKV 286
P + + + A+L+L +G+SL+V
Sbjct: 192 --LPDAFFNVHHDIPEAELLLIIGTSLQV 218
>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone
complex, found in both eukaryotes and archaea, that
binds and stabilizes newly synthesized polypeptides
allowing them to fold correctly. The complex contains
two alpha and four beta subunits, the two subunits being
evolutionarily related. In archaea, there is usually
only one gene for each subunit while in eukaryotes there
two or more paralogous genes encoding each subunit
adding heterogeneity to the structure of the hexamer.
The structure of the complex consists of a double beta
barrel assembly with six protruding coiled-coils.
Length = 129
Score = 34.6 bits (80), Expect = 0.030
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 7 DSIGVLKERLKKINKVKS------RNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAG 60
+ L+ +L + K K + EE ++ L A AE +++ V+V G G
Sbjct: 20 QQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAE-VKDDDKVLVDLGTG 78
Query: 61 ISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNA 113
+ + + K++ ++ + E+LE + E L + +L E +Q
Sbjct: 79 VYVEKSLEEAIEFLK----KRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127
>gnl|CDD|222366 pfam13764, E3_UbLigase_R4, E3 ubiquitin-protein ligase UBR4. This
is a family of E## ubiquitin ligase enzymes.
Length = 794
Score = 33.8 bits (78), Expect = 0.23
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 475 KEEAFDEDKAGGGRESNVRFPP 496
E +F D GGGRESN+R P
Sbjct: 599 TERSFSADSGGGGRESNMRLLP 620
>gnl|CDD|240138 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI). PHI is a
member of the SIS (Sugar ISomerase domain) superfamily.
In the ribulose monophosphate pathway of formaldehyde
fixation, hexulose-6-phosphate synthase catalyzes the
condensation of ribulose-5-phosphate with formadelhyde
to become hexulose-6-phosphate, which is then isomerized
to fructose-6-phosphate by PHI.
Length = 179
Score = 31.8 bits (73), Expect = 0.52
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 90 EELED-KPEILAAKCKQLAEAIQNAKHVVVYTGAG 123
EE+E+ +I + +L AI NAK + VY GAG
Sbjct: 9 EEIENVADKIDEEELDKLISAILNAKRIFVY-GAG 42
Score = 30.6 bits (70), Expect = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 27 EELED-EPEVLAAKCKKLAEAIQNAKHVVVYTGAG 60
EE+E+ ++ + KL AI NAK + VY GAG
Sbjct: 9 EEIENVADKIDEEELDKLISAILNAKRIFVY-GAG 42
>gnl|CDD|131770 TIGR02723, phenyl_P_alpha, phenylphosphate carboxylase, alpha
subunit. Members of this protein family are the alpha
subunit of phenylphosphate carboxylase. Phenol
(methyl-benzene) is converted to phenylphosphate, then
para-carboxylated by this four-subunit enzyme, with the
release of phosphate, to 4-hydroxybenzoate. The enzyme
contains neither biotin nor thiamin pyrophosphate. This
alpha subunit is homologous to the beta subunit and,
more broadly, to UbiD family decarboxylases [Energy
metabolism, Anaerobic].
Length = 485
Score = 32.0 bits (72), Expect = 0.90
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 209 CAHCDPVKYYWRVFDVTEHTARYAHQTA--RKCSCGEPLLDTIIHFGEKGVLLWPLNWDG 266
C C+P + VF T TA Y H T RK S G +L LWP++WD
Sbjct: 401 CTRCNPERGI-HVFKNTTGTALYPHATPHDRKYSIGSQVLFDC---------LWPVDWDK 450
Query: 267 AN 268
N
Sbjct: 451 TN 452
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.6 bits (72), Expect = 1.1
Identities = 20/105 (19%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 9 IGVLKERLKKINKVKSRNEELEDEPEVLA---AKCKKLAEAIQNAKHVVVYTGAGISTAA 65
I ++ER+K++ + + R EEL+ + + L + ++ E + AK
Sbjct: 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK----------E 372
Query: 66 KIPDYRSNFTIYRLKKINK----VKSRNEELEDKPEILAAKCKQL 106
++ + T +K+ K ++ EE+E++ + A+ +L
Sbjct: 373 ELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.5 bits (71), Expect = 1.1
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 452 KDEDGVKDEDGVKDEDGVKEEDGKEEAFDEDKAG 485
E K E ++ EE+ EE K G
Sbjct: 305 SPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 30.5 bits (69), Expect = 1.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 9 IGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKI 67
+ + ERLK + K K+ ++LE+E E + + ++ K V +Y+ AA I
Sbjct: 86 LAEVNERLKALEKKKAELKDLEEEREGILRSKQA-----EDGKLVKIYSKMKPDAAAAI 139
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 31.2 bits (71), Expect = 1.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 9 IGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNA 50
+ +KE K++ K+ S NE L+ E E L + + + + IQ A
Sbjct: 65 VAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106
>gnl|CDD|241119 cd12675, RRM2_Nop4p, RNA recognition motif 2 in yeast nucleolar
protein 4 (Nop4p) and similar proteins. This subgroup
corresponds to the RRM2 of Nop4p (also known as Nop77p),
encoded by YPL043W from Saccharomyces cerevisiae. It is
an essential nucleolar protein involved in processing
and maturation of 27S pre-rRNA and biogenesis of 60S
ribosomal subunits. Nop4p has four RNA recognition
motifs (RRMs), also termed RBDs (RNA binding domains) or
RNPs (ribonucleoprotein domains). .
Length = 83
Score = 28.7 bits (64), Expect = 1.5
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 304 PKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQ 363
PKL I NL W+ K KI G+Y +R+ P+K KLC K
Sbjct: 1 PKLIIRNLPWSIKKPVKLKKIFGRYGKVRE------ATIPRKRGGKLCGFAFVTMKKRKN 54
Query: 364 ATLKIN 369
A + +
Sbjct: 55 AEIALE 60
>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit. This family comprises of
several prefoldin subunits. The biogenesis of the
cytoskeletal proteins actin and tubulin involves
interaction of nascent chains of each of the two
proteins with the oligomeric protein prefoldin (PFD) and
their subsequent transfer to the cytosolic chaperonin
CCT (chaperonin containing TCP-1). Electron microscopy
shows that eukaryotic PFD, which has a similar structure
to its archaeal counterpart, interacts with unfolded
actin along the tips of its projecting arms. In its
PFD-bound state, actin seems to acquire a conformation
similar to that adopted when it is bound to CCT.
Length = 120
Score = 29.1 bits (66), Expect = 1.8
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 7 DSIGVLKERLKKINKVKSRNEELE---DEPEVLAAKCKKL---AEAIQNAKHVVVYTGAG 60
+ L+E ++++ K + L+ + EVL L E + + V+V GAG
Sbjct: 10 AELARLREAIEELEKTLETLKTLKKEDEGKEVLVPLGAGLFVKGE-VIDTDKVLVDLGAG 68
Query: 61 ISTAAKIPDYRSNFTIYRLK-KINKVKSRNEELEDKPEILAAKCKQLAEAIQ 111
+ I LK +I +++ + E+LE++ E L + L +Q
Sbjct: 69 YYV-----EKSLEEAIEFLKKRIEELEKQLEKLEEELEKLKDQITTLEANLQ 115
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 29.4 bits (67), Expect = 1.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTA 64
K AE + +AK V+ G G+ +
Sbjct: 2 DKAAELLASAKRPVILAGGGVRRS 25
Score = 29.1 bits (66), Expect = 2.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
+ AE + +AK V+ G G+ +
Sbjct: 2 DKAAELLASAKRPVILAGGGVRRS 25
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 30.6 bits (70), Expect = 1.9
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 44/159 (27%)
Query: 3 LDSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHV-VVYTGAGI 61
LD+ +IG+ +++ +I ++ + ++ P K L +V ++ TG I
Sbjct: 35 LDNGYNIGIDIDKIAEIELLEKGEKPKQEPPPKEIEKDPGL-------PNVSILSTGGTI 87
Query: 62 STAAKIPDYR-----SNFT---IYR----LKKINKVKSR---NEELED-KPEILAAKCKQ 105
A+K+ DYR FT + R L I ++ R N E+ PE +
Sbjct: 88 --ASKV-DYRTGAVTPAFTAEDLLRAVPELLDIANIRGRVLFNILSENMTPEYW----VE 140
Query: 106 LAEAIQN-----AKHVVV--------YTGAGISTAAKIP 131
+AEA+ A VVV YT A +S K P
Sbjct: 141 IAEAVYEEIKNGADGVVVAHGTDTMHYTAAALSFMLKTP 179
>gnl|CDD|238697 cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized
Sir2-like proteins which lack certain key catalytic
residues and conserved zinc binding cysteines; and are
members of the SIR2 superfamily of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation.
Length = 242
Score = 30.1 bits (68), Expect = 2.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 114 KHVVVYTGAGISTAAKIPDYRG-TKGIWTLLQQGKDIG-------NHDLSLAE 158
VV++ GAG+S ++ +PD++ I + L D N L LAE
Sbjct: 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAE 53
Score = 28.9 bits (65), Expect = 5.3
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 51 KHVVVYTGAGISTAAKIPDYRS 72
VV++ GAG+S ++ +PD+++
Sbjct: 1 GRVVIFVGAGVSVSSGLPDWKT 22
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 30.3 bits (69), Expect = 2.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTA 64
+K AE + AK V+ G G+ A
Sbjct: 191 RKAAELLAEAKRPVILAGGGVRRA 214
Score = 28.8 bits (65), Expect = 8.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
++ AE + AK V+ G G+ A
Sbjct: 191 RKAAELLAEAKRPVILAGGGVRRA 214
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 30.1 bits (68), Expect = 3.3
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 453 DEDGVKDEDGVKDEDGVKEEDGKEEAFDEDKAGGGRESNVRFPPGAD 499
ED +D + D+D ++ G +ED G R +R PP D
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEED--GNMRRRLIRTPPRVD 77
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 30.1 bits (68), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 41 KKLAEAIQNAKHVVVYTGAGI--STAAKI 67
KK AEAI+ AK + Y G G S A++
Sbjct: 194 KKAAEAIKEAKKPLFYLGGGAILSNASEE 222
>gnl|CDD|216819 pfam01973, MAF_flag10, Protein of unknown function DUF115. This
family of archaebacterial proteins has no known
function.
Length = 170
Score = 29.1 bits (66), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 269 KNADRADLILCVGSSLKVLRKYG 291
KN D+A +I+ S+LK L K+G
Sbjct: 45 KNRDKA-VIIAADSALKALLKHG 66
>gnl|CDD|183347 PRK11866, PRK11866, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 279
Score = 29.0 bits (65), Expect = 6.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 98 ILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTL 142
IL A K LAE ++VVV +G G S + +P++ T GI +
Sbjct: 18 ILEALRKALAELGIPPENVVVVSGIGCS--SNLPEFLNTYGIHGI 60
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.3 bits (66), Expect = 6.4
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 12 LKERLKKINK--------VKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGA---- 59
L+E ++++ K + E E E L K +KL ++ + +
Sbjct: 499 LREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLK 558
Query: 60 -----GISTAAKIPDYRSNFTI--YRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQ 111
++ + + R +++ +++ R +EL+ K + L + QL E +Q
Sbjct: 559 EELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQ 617
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 29.1 bits (66), Expect = 6.4
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
Query: 82 INKVKSRNEELEDKPEILAA-KC---------KQLAEAIQNAKHVVVYTGAGISTAAKIP 131
N+++ + +L +KP I+ K ++L +A+ A V+ IS +
Sbjct: 263 RNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFY--LISALTR-- 318
Query: 132 DYRGTKGIWTLLQQGKDIGNHDLSLAEP 159
+G+ LL+ ++ + AE
Sbjct: 319 -----EGLDELLRALAELLEETKAEAEA 341
>gnl|CDD|178324 PLN02723, PLN02723, 3-mercaptopyruvate sulfurtransferase.
Length = 320
Score = 28.6 bits (64), Expect = 6.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 34 EVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKI 67
E AA L I+N VVVY G GI +AA++
Sbjct: 89 EAFAAAVSALG--IENKDGVVVYDGKGIFSAARV 120
Score = 28.2 bits (63), Expect = 9.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 97 EILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKI 130
E AA L I+N VVVY G GI +AA++
Sbjct: 89 EAFAAAVSALG--IENKDGVVVYDGKGIFSAARV 120
>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of
ubiquitin-like proteins related to the E.coli
hypothetical protein ygdL. The common reaction mechanism
catalyzed by E1-like enzymes begins with a nucleophilic
attack of the C-terminal carboxylate of the
ubiquitin-like substrate, on the alpha-phosphate of an
ATP molecule bound at the active site of the activating
enzymes, leading to the formation of a high-energy
acyladenylate intermediate and subsequently to the
formation of a thiocarboxylate at the C termini of the
substrate. The exact function of this family is unknown.
Length = 231
Score = 28.7 bits (65), Expect = 6.8
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 19/69 (27%)
Query: 11 VLKERLKKIN---KVKSRNEELEDE--PEVLA--------------AKCKKLAEAIQNAK 51
V+ ER++ IN +V + E L + ++L AK +A +
Sbjct: 69 VMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKI 128
Query: 52 HVVVYTGAG 60
V+ GAG
Sbjct: 129 PVISSMGAG 137
>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed.
Length = 140
Score = 28.0 bits (63), Expect = 6.9
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 1 MILDSNDSIGVLKERLKKINKVKSRNEELEDEPEVL---AAKCKKLAEAIQNAKHVVVYT 57
+ S + + KE L+++ + + E L A A+ +++ V+V
Sbjct: 31 ELQASINELDTAKETLEEL-------KSKGEGKETLVPIGAGSFVKAK-VKDKDKVIVSL 82
Query: 58 GAGISTAAKIPDYRSNFTIYRLKKINKVKSR-NEELEDKPEILAAKCKQLAEAIQNA 113
GAG S A K D R +++ K + E L+ LA++ QLA+ +Q
Sbjct: 83 GAGYS-AEKDLDEAIEILDKRKEELEKALEKLEEALQK----LASRIAQLAQELQQL 134
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.3 bits (66), Expect = 7.1
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 12 LKERLKK----INKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHV---VVYTGAGISTA 64
+ERL K I+K+ + EELE E E + KL E K + +
Sbjct: 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
Query: 65 AKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAK 114
R YR +K+ K+K EL+ + + L + ++L+E + +
Sbjct: 380 FAE--TRDELKDYR-EKLEKLKREINELKRELDRLQEELQRLSEELADLN 426
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 29.0 bits (65), Expect = 7.7
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 4 DSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGIST 63
+ ++ E L++ K+K R EL + E AK + L A + A
Sbjct: 305 EELTTVRQENEELEEEYKIKKRTVELLPDAENNVAKLQALVVASSER----LLELAQQWE 360
Query: 64 AAKIP---DYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQ 111
A + P +YRS + K NK +L D+ + L K ++L +Q
Sbjct: 361 AHRTPLIDEYRS----LKEKNRNKEDETQRQL-DEIKKLRNKIEELESELQ 406
>gnl|CDD|233764 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
subunit, pyruvate/2-ketoisovalerate family. A number of
anaerobic and microaerophilic species lack pyruvate
dehydrogenase and have instead a four subunit,
oxygen-sensitive pyruvate oxidoreductase, with either
ferredoxins or flavodoxins used as the acceptor. Several
related four-subunit enzymes may exist in the same
species. This model describes a subfamily of beta
subunits, representing mostly pyruvate and
2-ketoisovalerate specific enzymes.
Length = 287
Score = 28.2 bits (63), Expect = 9.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 98 ILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTL 142
IL+A + LAE + + VVV +G G S AK P Y G L
Sbjct: 12 ILSALQRALAELNLDPEQVVVVSGIGCS--AKTPHYVNVNGFHGL 54
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 27.6 bits (62), Expect = 9.3
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 13 KERL-KKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKH 52
ERL I ++K++ E+LE E +L AK ++L + ++ +
Sbjct: 66 IERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQ 106
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.5 bits (64), Expect = 9.4
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 7 DSIGVLK------ERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAG 60
++ GV K E +K+ + + E LED E L + +KL + A+ Y
Sbjct: 163 EAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE---RY---- 215
Query: 61 ISTAAKIPDYRSNFTIYRLKKINKVKSRN-EELEDKPEILAAKCKQLAEAIQ 111
A++ + + +LK++ K EEL E L ++L EA +
Sbjct: 216 QELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEK 267
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 28.3 bits (64), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 28 ELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYR 71
+E+EP AA+ ++ + AK V+Y G G+ A +P R
Sbjct: 174 TVENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALR 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,206,787
Number of extensions: 2591026
Number of successful extensions: 3497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3403
Number of HSP's successfully gapped: 114
Length of query: 504
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 403
Effective length of database: 6,457,848
Effective search space: 2602512744
Effective search space used: 2602512744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)