RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10043
(504 letters)
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 274 bits (702), Expect = 7e-89
Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 69/365 (18%)
Query: 69 DYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAA 128
+Y + + Y +K K E+ D PE L K +LA + + VV +TGAGISTA+
Sbjct: 4 NYAAGLSPYA----DKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTAS 59
Query: 129 KIPDYRGTKGIWTLLQQGKDI-GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLH 187
IPD+RG G+WT+ ++G + A PT THMAL +L R G ++ +VSQN D LH
Sbjct: 60 GIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLH 119
Query: 188 LRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVT----EHTARYAHQ-TARKC-SC 241
+RSG PR L+E+HGNM VE CA C Y R V + T R AR +C
Sbjct: 120 VRSGFPRDKLAELHGNMFVEECAKCK--TQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
Query: 242 GEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKK 301
L DTI+ + + L + A++ + ADL + +G+SL++
Sbjct: 178 RGELRDTILDWEDS---LPDRDLALADEASRNADLSITLGTSLQI--------------- 219
Query: 302 ERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKD 361
P L K+ +L IVNLQ T D
Sbjct: 220 --------------------------RPSGN----LP--LATKRRGGRLVIVNLQPTKHD 247
Query: 362 DQATLKINGKCDVVFKQLMAHLNLDIPAYDKRR------DPVFYHSSHLIQPEYHTVRKP 415
A L+I+G D V +LM HL L+IPA+D R P+ + ++P+ + +
Sbjct: 248 RHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPKLEPKEESPTRI 307
Query: 416 MLDLP 420
+P
Sbjct: 308 NGSIP 312
Score = 83.2 bits (206), Expect = 9e-18
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 14 ERLKKI-NKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRS 72
L +K K E+ D PE L K +LA + + VV +TGAGISTA+ IPD+R
Sbjct: 7 AGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRG 66
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 273 bits (700), Expect = 4e-88
Identities = 115/368 (31%), Positives = 167/368 (45%), Gaps = 69/368 (18%)
Query: 69 DYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAA 128
+Y + + Y +K K E+ D PE L K +LA + + VV +TGAGISTA+
Sbjct: 4 NYAAGLSPYA----DKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTAS 59
Query: 129 KIPDYRGTKGIWTLLQQGKDI-GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLH 187
IPD+RG G+WT+ ++G + A PT THMAL +L R G ++ +VSQN D LH
Sbjct: 60 GIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLH 119
Query: 188 LRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVT----EHTARYAHQ-TARKC-SC 241
+RSG PR L+E+HGNM VE CA C Y R V + T R AR +C
Sbjct: 120 VRSGFPRDKLAELHGNMFVEECAKCK--TQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
Query: 242 GEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKK 301
L DTI+ + + L + A++ + ADL + +G+SL++
Sbjct: 178 RGELRDTILDWEDS---LPDRDLALADEASRNADLSITLGTSLQI--------------- 219
Query: 302 ERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKD 361
P L K+ +L IVNLQ T D
Sbjct: 220 --------------------------RPSGN----LP--LATKRRGGRLVIVNLQPTKHD 247
Query: 362 DQATLKINGKCDVVFKQLMAHLNLDIPAYDKRR------DPVFYHSSHLIQPEYHTVRKP 415
A L+I+G D V +LM HL L+IPA+D R P+ + ++P+ + +
Sbjct: 248 RHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPKLEPKEESPTRI 307
Query: 416 MLDLPDEE 423
+P
Sbjct: 308 NGSIPAGP 315
Score = 82.9 bits (205), Expect = 2e-17
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 14 ERLKKI-NKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRS 72
L +K K E+ D PE L K +LA + + VV +TGAGISTA+ IPD+R
Sbjct: 7 AGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRG 66
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 170 bits (434), Expect = 4e-50
Identities = 80/306 (26%), Positives = 116/306 (37%), Gaps = 84/306 (27%)
Query: 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGK-DI----------- 149
K K+ + + ++ V TGAGIST + IPD+RG GI+ Q DI
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 150 -----GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
G + A+P L H+ L KL G ++ V++QN D LH R+G + V+ E+HGN+
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG-SKKVI-ELHGNV 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGEKGVLLWPLN 263
C C+ + + V + + C C + I+ FGE L
Sbjct: 120 EEYYCVRCE------KKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGE------NLP 167
Query: 264 ---WDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQA 320
A + RA L++ +GSSL V
Sbjct: 168 QDALREAIGLSSRASLMIVLGSSLVV---------------------------------- 193
Query: 321 TLKINGKYPVLRKYGWLWGL-DRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQL 379
YP L + KL IVNL TP DD ATLK N +++
Sbjct: 194 -------YPAAE-------LPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRV 239
Query: 380 MAHLNL 385
M +
Sbjct: 240 MEEGGI 245
Score = 61.4 bits (150), Expect = 8e-11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 39 KCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRS 72
K K+ + + ++ V TGAGIST + IPD+R
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRG 35
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 136 bits (344), Expect = 4e-37
Identities = 77/261 (29%), Positives = 105/261 (40%), Gaps = 69/261 (26%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHD---------- 153
++ AE + +KH VV+TGAGIS + IP +RG G+W +D
Sbjct: 6 RKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWR---------KYDPEEVASISGF 56
Query: 154 ----------------LSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVL 197
AEP H A+ +L R G VK V++QN D LH R+G R VL
Sbjct: 57 KRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG-SRRVL 115
Query: 198 SEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLL--DTIIHFGE 254
E+HG+M C C +D +E + +C CG + ++ FGE
Sbjct: 116 -ELHGSMDKLDCLDCH------ETYDWSEFVEDFNKGEIPRCRKCGSYYVKPR-VVLFGE 167
Query: 255 KGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRP--------KKERPKL 306
L A + A D + VGSSL V P KK K+
Sbjct: 168 ---PLPQRTLFEAIEEAKHCDAFMVVGSSLVV-----------YPAAELPYIAKKAGAKM 213
Query: 307 CIVNLQWTPKDDQATLKINGK 327
IVN + T D +KI GK
Sbjct: 214 IIVNAEPTMADPIFDVKIIGK 234
Score = 54.1 bits (131), Expect = 2e-08
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAKIPDYRS 72
+K AE + +KH VV+TGAGIS + IP +R
Sbjct: 6 RKAAEILAKSKHAVVFTGAGISAESGIPTFRG 37
Score = 36.8 bits (86), Expect = 0.011
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 349 KLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHL 383
K+ IVN + T D +KI GK V +++ +
Sbjct: 212 KMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 136 bits (345), Expect = 7e-37
Identities = 66/269 (24%), Positives = 107/269 (39%), Gaps = 63/269 (23%)
Query: 95 KPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTK-GIWTLLQQGKDIGNHD 153
K + + ++LA+ I+ KHVV TG+G S + IP +RG+ IW+ +D
Sbjct: 27 KKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWS---------KYD 77
Query: 154 --------------------------LSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLH 187
E H+AL L G++K VV+QN D LH
Sbjct: 78 PRIYGTIWGFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLH 137
Query: 188 LRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLD 247
SG V+ +HGN+ VC C+ K + + T+ + HQ +C CG
Sbjct: 138 EASG-NTKVI-SLHGNVFEAVCCTCN--KIVKLNKIMLQKTSHFMHQLPPECPCGGIFKP 193
Query: 248 TIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRP-------- 299
II FGE ++ A + + DL+L +G+S V
Sbjct: 194 NIILFGE---VVSSDLLKEAEEEIAKCDLLLVIGTSSTV-----------STATNLCHFA 239
Query: 300 KKERPKLCIVNLQWTPKDDQ-ATLKINGK 327
K++ K+ +N+ T ++ + + K
Sbjct: 240 CKKKKKIVEINISKTYITNKMSDYHVCAK 268
Score = 58.1 bits (141), Expect = 1e-09
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 32 EPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRS 72
+ + + ++LA+ I+ KHVV TG+G S + IP +R
Sbjct: 27 KKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRG 67
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 132 bits (335), Expect = 9e-36
Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 44/247 (17%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWT------------------LLQQ 145
++L + I +K++V TGAG+S + IP +RG G+W + +
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 62
Query: 146 GKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMS 205
+ A+P H A +L R G +K +++QN DDLH R+G R+V+ +HG++
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLR 120
Query: 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPLNW 264
V C C+ + + C CG L ++ GE +L P
Sbjct: 121 VVRCTSCNNS-FEVESAPKIPPLPK--------CDKCGSLLRPGVVWAGE---MLPPDVL 168
Query: 265 DGANKNADRADLILCVGSSLKVLRKYGWLW---GL-DRPKKERPKLCIVNLQWTPKDDQA 320
D A + +RAD+I+ G+S V L K+ + +N TP A
Sbjct: 169 DRAMREVERADVIIVAGTSAVV-------QPAASLPLIVKQRGGAIIEINPDETPLTPIA 221
Query: 321 TLKINGK 327
+ GK
Sbjct: 222 DYSLRGK 228
Score = 35.2 bits (82), Expect = 0.031
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 349 KLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHL 383
+ +N TP A + GK V +L+ H+
Sbjct: 206 AIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 132 bits (333), Expect = 3e-35
Identities = 58/325 (17%), Positives = 101/325 (31%), Gaps = 91/325 (28%)
Query: 104 KQLAEAIQN--AKHVVVYTGAGISTAAKIPDYRG-TKGIWTLLQQGK-----DIGNHDL- 154
+++A +++ V+ GAGIST+ IPD+R G++ L + K + + D
Sbjct: 9 RKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFF 68
Query: 155 ----------------SLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198
P+ H L +K V +QN D L ++G+ ++
Sbjct: 69 QSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLII 128
Query: 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE--- 254
E HG+ + C C + A + + KC CGE + I+ FGE
Sbjct: 129 EAHGSFAHCHCIGC---GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 185
Query: 255 -------KGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLC 307
W + + L++ VG+SL V P P+
Sbjct: 186 DSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAV-----------YPFASLPEEI 234
Query: 308 IVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQ----WTPKDDQ 363
+ K + NL+ +
Sbjct: 235 -------------------------------------PRKVKRVLCNLETVGDFKANKRP 257
Query: 364 ATLKINGKCDVVFKQLMAHLNLDIP 388
L ++ D +QL+ L
Sbjct: 258 TDLIVHQYSDEFAEQLVEELGWQED 282
Score = 54.0 bits (130), Expect = 3e-08
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 41 KKLAEAIQN--AKHVVVYTGAGISTAAKIPDYRSNFT-IY-RLKKIN 83
+K+A +++ V+ GAGIST+ IPD+RS T +Y L ++
Sbjct: 9 RKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLK 55
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 130 bits (330), Expect = 8e-35
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 36/209 (17%)
Query: 104 KQLAEAIQN--AKHVVVYTGAGISTAAKIPDYRG-TKGIWTLLQQGK--------DIGN- 151
+ +AE I+ + VVV GAGIST + IPD+R G+++ LQQ ++
Sbjct: 12 QDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFF 71
Query: 152 -----------HDL--SLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198
+L +P +TH L L+ G + + +QN D L SG+P S L
Sbjct: 72 FHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLV 131
Query: 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGEKGV 257
E HG + C C R F + A +C C + I+ FGE
Sbjct: 132 EAHGTFASATCTVC------QRPFPGEDIRADVMADRVPRCPVCTGVVKPDIVFFGEP-- 183
Query: 258 LLWPLNWDGANKNADRADLILCVGSSLKV 286
L + ADL+L +G+SL+V
Sbjct: 184 -LPQRFLLHV-VDFPMADLLLILGTSLEV 210
Score = 55.5 bits (134), Expect = 1e-08
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 41 KKLAEAIQN--AKHVVVYTGAGISTAAKIPDYRSNFT-IY-RLKKIN 83
+ +AE I+ + VVV GAGIST + IPD+RS + +Y L++ +
Sbjct: 12 QDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYD 58
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 130 bits (329), Expect = 9e-35
Identities = 53/269 (19%), Positives = 97/269 (36%), Gaps = 54/269 (20%)
Query: 100 AAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWT------------------ 141
++ + AKH+V+ +GAG+S + +P +RG G W
Sbjct: 8 SSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPS 67
Query: 142 LLQQGKDIGNHDLSLAEPTLTHMALYKL----YRHGFVKHVVSQNCDDLHLRSGLPRSVL 197
+ + + EP H A+ + + G V++QN D+LH ++G +++L
Sbjct: 68 RVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG-TKNLL 126
Query: 198 SEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTA--------------RKCSCGE 243
E+HG++ C C V ++ + + A + + CG
Sbjct: 127 -EIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGG 185
Query: 244 PLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKV-----LRKYGWLWGLDR 298
L ++ FGE L P + ++ DL L VG+S V G+
Sbjct: 186 LLRPHVVWFGE---NLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGV-- 240
Query: 299 PKKERPKLCIVNLQWTPKDDQATLKINGK 327
+ N + TP ++ G
Sbjct: 241 ------PVAEFNTETTPATNRFRFHFQGP 263
Score = 53.8 bits (130), Expect = 4e-08
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 37 AAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRS 72
++ + AKH+V+ +GAG+S + +P +R
Sbjct: 8 SSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRG 43
Score = 35.3 bits (82), Expect = 0.033
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 349 KLCIVNLQWTPKDDQATLKINGKCDVVFKQLMA 381
+ N + TP ++ G C + +A
Sbjct: 241 PVAEFNTETTPATNRFRFHFQGPCGTTLPEALA 273
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 131 bits (330), Expect = 3e-34
Identities = 59/366 (16%), Positives = 109/366 (29%), Gaps = 110/366 (30%)
Query: 76 IYRLKK-INKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYR 134
I L++ INKV L + I + + A+ ++V TGAG+ST+ IPD+R
Sbjct: 13 IKDLQRAINKVLCTRLRLSNFFTI-----DHFIQKLHTARKILVLTGAGVSTSLGIPDFR 67
Query: 135 GTKGIWTLLQQ-----GKDIGNHDL-----------------SLAEPTLTHMALYKLYRH 172
++G ++ ++ +D+ N+++ + H + L
Sbjct: 68 SSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMK 127
Query: 173 GFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHC-------------------- 212
G + +QN D+L +G+ L + HG+ + C C
Sbjct: 128 GKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPL 187
Query: 213 ---------DPVKYYWRVFDVTEHTARYAHQTARKC-SCGEPLLDTIIHFGEKGVLLWPL 262
+ + + + + L I FGE L
Sbjct: 188 CPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEA---LPNK 244
Query: 263 NWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATL 322
++ DL++C+G+SLKV
Sbjct: 245 FHKSIREDILECDLLICIGTSLKV------------------------------------ 268
Query: 323 KINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAH 382
PV + ++N + L + G CD + +
Sbjct: 269 -----APVSE-------IVNMVPSHVPQVLINRDPVK-HAEFDLSLLGYCDDIAAMVAQK 315
Query: 383 LNLDIP 388
IP
Sbjct: 316 CGWTIP 321
Score = 64.1 bits (156), Expect = 2e-11
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 3 LDSNDSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGIS 62
L ++ ++K+ + INKV L + + + + A+ ++V TGAG+S
Sbjct: 4 LAKKQTVRLIKDLQRAINKVLCTRLRLSNFFTI-----DHFIQKLHTARKILVLTGAGVS 58
Query: 63 TAAKIPDYRS 72
T+ IPD+RS
Sbjct: 59 TSLGIPDFRS 68
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 123 bits (309), Expect = 3e-31
Identities = 67/387 (17%), Positives = 121/387 (31%), Gaps = 93/387 (24%)
Query: 104 KQLAEAIQN--AKHVVVYTGAGISTAAKIPDYRG-TKGIWTLLQQGK-----DIGNHDL- 154
+++A +++ V+ GAGIST+ IPD+R G++ L + K + + D
Sbjct: 17 RKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFF 76
Query: 155 ----------------SLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198
P+ H L +K V +QN D L ++G+ ++
Sbjct: 77 QSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLII 136
Query: 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGE--- 254
E HG+ + C C + A + + KC CGE + I+ FGE
Sbjct: 137 EAHGSFAHCHCIGC---GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 193
Query: 255 -------KGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLC 307
W + + L++ VG+SL V P P+
Sbjct: 194 DSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAV-----------YPFASLPEEI 242
Query: 308 IVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQ----WTPKDDQ 363
+ K + NL+ +
Sbjct: 243 -------------------------------------PRKVKRVLCNLETVGDFKANKRP 265
Query: 364 ATLKINGKCDVVFKQLMAHL--NLDIPAYDKRRDPVFYHSSHLIQPEYHTVRKPMLDLPD 421
L ++ D +QL+ L D + + +S + H + LD +
Sbjct: 266 TDLIVHQYSDEFAEQLVEELGWQEDFEKILTAQGGMGDNSKEQLLEIVHDLENLSLDQSE 325
Query: 422 EEYFSKYEDCENLLESFREMENYQNST 448
E K + L E+ +++
Sbjct: 326 HESADKKDKKLQRLNGHDSDEDGASNS 352
Score = 42.3 bits (99), Expect = 2e-04
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 41 KKLAEAIQN--AKHVVVYTGAGISTAAKIPDYRSNFT-IY-RLKKIN 83
+K+A +++ V+ GAGIST+ IPD+RS T +Y L ++
Sbjct: 17 RKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLK 63
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 119 bits (299), Expect = 3e-30
Identities = 69/335 (20%), Positives = 123/335 (36%), Gaps = 74/335 (22%)
Query: 79 LKKINKVKSRNEELEDKPEILAAKCKQLAEAIQN--AKHVVVYTGAGISTAAKIPDYRGT 136
+ + S+ E L D+ + + +A +Q+ + V+ GAGIST+A IPD+R
Sbjct: 12 FSQTLSLGSQKERLLDELTL-----EGVARYMQSERCRRVICLVGAGISTSAGIPDFRSP 66
Query: 137 K-GIWTLLQQGK--------DIGN------------HDL--SLAEPTLTHMALYKLYRHG 173
G++ L++ +I +L +PT+ H + L G
Sbjct: 67 STGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKG 126
Query: 174 FVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAH 233
+ +QN D L +GL + L E HG C ++ + + + E +
Sbjct: 127 LLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSAS-CRHEYPLSWMKEKIF--SE 183
Query: 234 QTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKV-----LR 288
T + C + I+ FGE L + + + DL+L +G+SL+V L
Sbjct: 184 VTPKCEDCQSLVKPDIVFFGES---LPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASL- 239
Query: 289 KYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERP 348
+ + P+L ++N + + D I G G+D K+
Sbjct: 240 -------ISKAPLSTPRL-LINKEKAGQSDPFLGMIMGLGG---------GMDFDSKKA- 281
Query: 349 KLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHL 383
+D + G+CD L L
Sbjct: 282 ----------YRD----VAWLGECDQGCLALAELL 302
Score = 47.1 bits (112), Expect = 7e-06
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 9 IGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQN--AKHVVVYTGAGISTAAK 66
+ L+ + + S+ E L DE + + +A +Q+ + V+ GAGIST+A
Sbjct: 5 MDFLRNLFSQTLSLGSQKERLLDELTL-----EGVARYMQSERCRRVICLVGAGISTSAG 59
Query: 67 IPDYRS 72
IPD+RS
Sbjct: 60 IPDFRS 65
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 114 bits (289), Expect = 1e-29
Identities = 55/248 (22%), Positives = 83/248 (33%), Gaps = 65/248 (26%)
Query: 114 KHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHD-------------------- 153
V+V TGAGIS + I +R G+W H
Sbjct: 2 PRVLVLTGAGISAESGIRTFRAADGLWE---------EHRVEDVATPEGFDRDPELVQAF 52
Query: 154 ---------LSLAEPTLTHMALYKLYRH-GFVKHVVSQNCDDLHLRSGLPRSVLSEVHGN 203
+P H+AL KL G +V+QN D+LH R+G +V+ +HG
Sbjct: 53 YNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG-NTNVI-HMHGE 110
Query: 204 MSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLN 263
+ C+ +V D T C PL ++ FGE PL
Sbjct: 111 LLKVRCSQSG------QVLDWTGDVTP--EDKCHCCQFPAPLRPHVVWFGE-----MPLG 157
Query: 264 WDGANKNADRADLILCVGSSLKVLRKYGWLW---GL-DRPKKERPKLCIVNLQWTPKDDQ 319
D AD+ + +G+S V + G K +NL+ + ++
Sbjct: 158 MDEIYMALSMADIFIAIGTSGHV-------YPAAGFVHEAKLHGAHTVELNLEPSQVGNE 210
Query: 320 ATLKINGK 327
K G
Sbjct: 211 FAEKYYGP 218
Score = 43.7 bits (104), Expect = 5e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 51 KHVVVYTGAGISTAAKIPDYRS 72
V+V TGAGIS + I +R+
Sbjct: 2 PRVLVLTGAGISAESGIRTFRA 23
Score = 32.5 bits (75), Expect = 0.22
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 349 KLCIVNLQWTPKDDQATLKINGKCDVVFKQLMAHL 383
+NL+ + ++ K G V + + L
Sbjct: 196 HTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.1 bits (171), Expect = 9e-13
Identities = 79/488 (16%), Positives = 139/488 (28%), Gaps = 147/488 (30%)
Query: 11 VLKERLKKINKVKSRNEELEDEPEV---LAAK----CKKLAEAIQNAKHVVVYTGAGIST 63
L+E+ KI + +DEP L K L E + + V
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-------L 84
Query: 64 AAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVV--VYTG 121
+ ++ + + L+ N + + +L + + K K+L + A+ + +
Sbjct: 85 NLCLTEFENCY----LEG-NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 122 AGIS---TAAKIPDYRGTKGIWTLL--QQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVK 176
S A G + + Q GN D E L LY+ Y V
Sbjct: 140 KSNSALFRAVG----EGNAQLVAIFGGQ-----GNTDDYFEE--LRD--LYQTYHV-LVG 185
Query: 177 ---HVVSQNCDDL---------HLRSGLP-RSVLSEVHGNMSVEVCAHCDPV-------- 215
++ +L GL L + P+
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVI 244
Query: 216 ---KYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLL-----WPLNWDGA 267
Y VT + R G H +G++ +W+
Sbjct: 245 QLAHYV-----VTAKLLGFTPGELRSYLKG-----ATGH--SQGLVTAVAIAETDSWESF 292
Query: 268 NKNADRADLILCVGSSLKVLRKYGWLW-GLDRPKKERPKLCIVNLQWTPKDDQATLKING 326
+ +A + VL + G+ R + P + P + +L+ N
Sbjct: 293 FVSVRKA---------ITVL-----FFIGV-RCYEAYPNTSL-----PPSILEDSLENNE 332
Query: 327 KYP----VLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLK-ING-KCDVV----- 375
P + L + + + + N P Q + +NG K VV
Sbjct: 333 GVPSPMLSIS------NLTQEQVQD-YVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 376 --------FKQLMAHLNLD---IPAYDKRR-------DPVF--YHSSHLIQPEYHTVRKP 415
++ A LD IP + +R+ PV +HS L P + K
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASPFHSHLL-VPASDLINK- 441
Query: 416 MLDLPDEE 423
DL
Sbjct: 442 --DLVKNN 447
Score = 32.3 bits (73), Expect = 0.50
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 41/144 (28%)
Query: 164 MALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFD 223
M LYK + V ++ D+ H + S+L V N PV
Sbjct: 1633 MDLYK--TSKAAQDVWNR-ADN-HFKDTYGFSILDIVINN----------PVN------- 1671
Query: 224 VTEH---------TARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDGAN------ 268
+T H Y+ G+ + I F E +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGLLSAT 1729
Query: 269 KNADRADLILCVG-SSLKVLRKYG 291
+ A + + ++ + L+ G
Sbjct: 1730 QFTQPA--LTLMEKAAFEDLKSKG 1751
Score = 31.9 bits (72), Expect = 0.55
Identities = 45/234 (19%), Positives = 70/234 (29%), Gaps = 95/234 (40%)
Query: 80 KKINKVKSRNEELEDKPEILAAKCKQLAEAIQN-AKHVVVYTG-----AGISTA------ 127
+NK N L P KQ+ ++ N AK++VV +G G++
Sbjct: 351 DYVNKT---NSHL---PA-----GKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKA 398
Query: 128 ------AKIPDYRGTKGIWTLLQQGKDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQ 181
++IP + ++ N L +A P H L K +V
Sbjct: 399 PSGLDQSRIP-FS---------ERKLKFSNRFLPVASPF--HSHLLVPASDLINKDLVKN 446
Query: 182 NCD----DLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTAR 237
N D+ + PV Y T +
Sbjct: 447 NVSFNAKDIQI-------------------------PV--Y--------DTFDGSDLRVL 471
Query: 238 KCSCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVG----SSLKVL 287
S E ++D II P+ W+ + +A IL G S L VL
Sbjct: 472 SGSISERIVDCIIRL--------PVKWETTTQF--KATHILDFGPGGASGLGVL 515
Score = 30.4 bits (68), Expect = 2.1
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 43/128 (33%)
Query: 2 ILDSNDSIGVLKERLKKINKVKSRNEELEDE-------P---------EVLAAKCKKLAE 45
++ + V+ R + R+E P E L +++ +
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 46 AIQ--------NAKH--VVVYTGAG----ISTAAKIPDYRSNFTIYRLKKIN----KVKS 87
N ++ V AG + T + ++ +L+KI+ +
Sbjct: 1836 RTGWLVEIVNYNVENQQYVA---AGDLRALDTVTNVLNF------IKLQKIDIIELQKSL 1886
Query: 88 RNEELEDK 95
EE+E
Sbjct: 1887 SLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 7e-08
Identities = 79/529 (14%), Positives = 144/529 (27%), Gaps = 169/529 (31%)
Query: 2 ILDSNDSIGVLKERLKKINKVKSRNEE-------LEDEPE---------VLAAKCKKLAE 45
+ D SI + KE + I K L + E VL K L
Sbjct: 38 VQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 46 AIQN-AKHVVVYTGAGISTAAKIPDYRSN-----FTIYRLKKINKVKSRNEELEDKPEIL 99
I+ + + T I ++ Y N + + RL+ K+ R LE +P
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKL--RQALLELRPA-- 150
Query: 100 AAKCKQLAEAIQNAKHVVVY--TGAGISTAA-------KIPDYRGTKGIWTLLQQGKDIG 150
K+V++ G+G + A K+ K W ++
Sbjct: 151 --------------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------NLK 190
Query: 151 NHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCD-----------------DLHLRSGLP 193
N + P L KL + + D L
Sbjct: 191 NCN----SPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 194 RS--VLSEVHGNMSVEVCAHCDPVKYYWRVFDV---TEHTARYAHQTARKCSCGEPLLDT 248
VL V + W F++ T R+ T D
Sbjct: 245 NCLLVLLNV-----------QNA--KAWNAFNLSCKILLTTRFKQVT-----------DF 280
Query: 249 IIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCI 308
+ + L D + L +L K +L RP+ ++
Sbjct: 281 LSAATTTHISL------------DHHSMTLTPDEVKSLLLK--YLDC--RPQDLPREVLT 324
Query: 309 VNLQWTPKDDQATLKINGKYPVLRKYGWLWG----LDRPKKERP-KLCIVNLQWTPKDDQ 363
N P +++ +R W ++ K + + L+ P + +
Sbjct: 325 TN----P------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYR 372
Query: 364 ATLKINGKCDVVF-------KQLMAHLNLDIPAYDKRRDPVFYHSSHLI--QPEYHTVRK 414
+ VF L++ + D+ D H L+ QP+ T+
Sbjct: 373 KMFD---RL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 415 PMLDLPDEEYFSKYEDCEN-------LLESFREMENYQNSTVFVKDEDG 456
P + Y EN +++ + + + + + D
Sbjct: 429 PSI------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 53.3 bits (127), Expect = 2e-07
Identities = 74/515 (14%), Positives = 151/515 (29%), Gaps = 152/515 (29%)
Query: 15 RLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVY--TGAGIS--TAAKIPDY 70
RL+ K++ + L E ++ AK+V++ G+G + Y
Sbjct: 133 RLQPYLKLR-----------------QALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 71 R----SNFTIY--RLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAKHVVVYTGAGI 124
+ +F I+ LK N ++ E L+ + ++ N K + A +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 125 STAAKIPDYRG---------TKGIW--------TLLQQGKDIGNHDLSLAEPTLTHMALY 167
K Y W LL + D L+ T TH++L
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTD-FLSAATTTHISL- 291
Query: 168 KLYRHGFVKH--------VVSQNCDDLHLRSGLPRSVLSEVHGN-MSVEVCA---HCDPV 215
+ + D LPR VL+ N + + A
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQD------LPREVLT---TNPRRLSIIAESIRDGLA 342
Query: 216 KY-YWRVFDVTEHTARYAHQTARKCS--CGEP-----LLDTIIHFGEKGVLLWPLN---- 263
+ W+ H T + S EP + D + F + P
Sbjct: 343 TWDNWK------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHI-PTILLSL 394
Query: 264 -WDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQW---TPKDDQ 319
W K+ + SL +++ KE + I ++ +++
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSL-----------VEKQPKES-TISIPSIYLELKVKLENE 442
Query: 320 ATL--KINGKYPVLRKYGW-------------------LWGLDRPKK--ERPKLCIVNLQ 356
L I Y + + + L ++ P++ + ++ +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFR 501
Query: 357 WTPK----DDQATLKINGKCDVV--FKQLMAHLNLDIPAYDKRRDPV--FYHSSHLIQPE 408
+ + D A + + K ++ + P Y++ + + F L + E
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-----LPKIE 556
Query: 409 YHTVRKPMLDL-------PDEEYFSKYEDCENLLE 436
+ + DL DE +E+ ++
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAI---FEEAHKQVQ 588
Score = 39.8 bits (92), Expect = 0.002
Identities = 69/409 (16%), Positives = 117/409 (28%), Gaps = 136/409 (33%)
Query: 153 DLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHC 212
D E + + ++ FV + +C D+ +P+S+LS+ E H
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCKDV---QDMPKSILSK-------EEIDHI 54
Query: 213 ----DPVKYYWRVFDVTEHTARYAHQ---------------TARKCSCGEPLLDTIIHFG 253
D V R+F Q + K +P + T ++
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 254 EKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRK------YG-------WL------- 293
++ L + N A N R L + +L LR G W+
Sbjct: 115 QRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 294 ------------WGLDRPKKERPKLCIVNLQ---------WTPKDDQAT---LKINGKYP 329
W L+ P+ + LQ WT + D ++ L+I+
Sbjct: 174 YKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 330 VLRKYGWLWGLDRPKKERPKLCIVNLQ--WTPKDDQATLKINGKCDVVF----KQLMAHL 383
LR+ L E C++ L K A N C ++ KQ+ L
Sbjct: 233 ELRRL-----LKSKPYEN---CLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFL 281
Query: 384 NLDIPAYDKRRDPVFYHSSHLIQPEYHT-----VRKPMLDLPDE---------------- 422
+ A + +HS L E + + DLP E
Sbjct: 282 S----AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 423 -------EYFSKY---------EDCENLLESFREMENYQNSTVFVKDED 455
+ + E N+LE + + +VF
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.076
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 24 SRNEELEDEPEVL-------AAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTI 76
++ + L EPE + + ++L A + + A K +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW------REKAKK---DLEEWNQ 125
Query: 77 YRLKKINKVKSRNEELEDK 95
+ +++ K K N +
Sbjct: 126 RQSEQVEKNKINNRIADKA 144
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 34.4 bits (80), Expect = 0.083
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAK 66
+KLA+ ++ + ++ + G+G + A K
Sbjct: 192 RKLAQLLRYSSNIALMCGSGCAGAHK 217
Score = 34.0 bits (79), Expect = 0.13
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAK 129
++LA+ ++ + ++ + G+G + A K
Sbjct: 192 RKLAQLLRYSSNIALMCGSGCAGAHK 217
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 34.5 bits (80), Expect = 0.087
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAK 66
+L + + A+ ++Y G G A K
Sbjct: 203 TRLTQTLLAAERPLIYYGIGARKAGK 228
Score = 33.7 bits (78), Expect = 0.15
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAK 129
+L + + A+ ++Y G G A K
Sbjct: 203 TRLTQTLLAAERPLIYYGIGARKAGK 228
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 32.5 bits (75), Expect = 0.27
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 95 KPEILAAKCKQLAEAIQNAKHVVVYTGAGISTAA 128
KP + C++L + + K +V+ G++T
Sbjct: 72 KPHQIKMVCEELKDILSETKILVISLAVGVTTPL 105
Score = 27.9 bits (63), Expect = 7.9
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAA 65
P + C++L + + K +V+ G++T
Sbjct: 73 PHQIKMVCEELKDILSETKILVISLAVGVTTPL 105
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 32.6 bits (75), Expect = 0.35
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAK 66
E + N+K V+Y G G
Sbjct: 196 DAAVELLNNSKRPVIYAGIGTMGHGP 221
Score = 31.8 bits (73), Expect = 0.59
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAK 129
E + N+K V+Y G G
Sbjct: 196 DAAVELLNNSKRPVIYAGIGTMGHGP 221
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 31.4 bits (72), Expect = 0.71
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
K+ E+++NA+ VV G + +
Sbjct: 211 NTTEQVILSKIEESLKNAQKPVVIAGHEVISF 242
Score = 30.6 bits (70), Expect = 1.2
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
++ E+++NA+ VV G + +
Sbjct: 211 NTTEQVILSKIEESLKNAQKPVVIAGHEVISF 242
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 31.3 bits (72), Expect = 0.88
Identities = 3/33 (9%), Positives = 8/33 (24%)
Query: 32 EPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
+ L A + +K + +
Sbjct: 191 DSACLKAFRDAAENKLAMSKRTALLADFLVLRH 223
Score = 30.6 bits (70), Expect = 1.4
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
L A + +K + +
Sbjct: 192 SACLKAFRDAAENKLAMSKRTALLADFLVLRH 223
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.96
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 16/50 (32%)
Query: 182 NCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPV---KYY-----WRVFD 223
C + P+ V G++ VCA C V K WR F
Sbjct: 26 EC-----KVYPPKIVERFSEGDV---VCALCGLVLSDKLVDTRSEWRTFS 67
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 31.0 bits (71), Expect = 1.2
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
E + ++AK+ V+ A S
Sbjct: 194 AESEKEVIDTILVLDKDAKNPVILADACCSRH 225
Score = 30.2 bits (69), Expect = 1.8
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
E + ++AK+ V+ A S
Sbjct: 194 AESEKEVIDTILVLDKDAKNPVILADACCSRH 225
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 30.6 bits (70), Expect = 1.2
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAK 66
+++ I +K V+Y G G ++
Sbjct: 205 EQIVRLISESKKPVLYVGGGCLNSSD 230
Score = 30.2 bits (69), Expect = 1.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAK 129
+Q+ I +K V+Y G G ++
Sbjct: 205 EQIVRLISESKKPVLYVGGGCLNSSD 230
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 30.6 bits (70), Expect = 1.3
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
L A ++ + I N V V G+ + A
Sbjct: 192 EASLNAAVEETLKFIANRDKVAVLVGSKLRAA 223
Score = 30.2 bits (69), Expect = 1.8
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
L A ++ + I N V V G+ + A
Sbjct: 192 EASLNAAVEETLKFIANRDKVAVLVGSKLRAA 223
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 30.7 bits (70), Expect = 1.3
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
+ LAA ++ A+++A V+ +
Sbjct: 205 RDALAACADEVLAAMRSATSPVLMVCVEVRRY 236
Score = 30.3 bits (69), Expect = 1.6
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
+ LAA ++ A+++A V+ +
Sbjct: 205 RDALAACADEVLAAMRSATSPVLMVCVEVRRY 236
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 30.6 bits (70), Expect = 1.4
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
L A ++ + V+ G+ + A
Sbjct: 192 HTSLKAAVDATVALLEKSASPVMLLGSKLRAA 223
Score = 30.2 bits (69), Expect = 1.6
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
L A ++ + V+ G+ + A
Sbjct: 192 HTSLKAAVDATVALLEKSASPVMLLGSKLRAA 223
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 41 KKLAEAIQNAKHVVVYTGAGI--STAAK 66
+ A + AKH V+ GA S A
Sbjct: 207 DQAAALLAEAKHPVLVVGAAAIRSGAVP 234
Score = 29.4 bits (67), Expect = 3.0
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 104 KQLAEAIQNAKHVVVYTGAGI--STAAK 129
Q A + AKH V+ GA S A
Sbjct: 207 DQAAALLAEAKHPVLVVGAAAIRSGAVP 234
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar,
3-hexulose-6-phosphate isomerase structural genomics;
HET: CME CIT; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.80.1.3
Length = 180
Score = 28.8 bits (65), Expect = 2.6
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 11 VLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGIS 62
L I +K E + ++ L + I AK + + G G S
Sbjct: 6 ELDIVSNNILILKKFYTNDEWKNKL-----DSLIDRIIKAKKIFI-FGVGRS 51
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.8 bits (67), Expect = 2.9
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 12 LKERLKKINK----VKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA-AK 66
L+ RLKK K ++ +LE E L + +L I K + + A A+
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 67 IPDYRSNFTIYRLKKINKVKSRNEELEDKPEILAAKCKQLAEAIQN 112
+ D S LKKI +++S +L++ E A + + ++
Sbjct: 1104 LEDETSQKNNA-LKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 29.4 bits (67), Expect = 3.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTA 64
++A+ I AK+ + G S
Sbjct: 198 DQVAKLIAQAKNPIFLLGLMASQP 221
Score = 28.6 bits (65), Expect = 5.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
Q+A+ I AK+ + G S
Sbjct: 198 DQVAKLIAQAKNPIFLLGLMASQP 221
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 28.4 bits (63), Expect = 3.9
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 202 GNMSVEVCAHCDPV---KYYWRVFDVTEHTARYAHQTARKCS-CGEPLLDTIIHFGEKG 256
G++S + CA C ++ D Y H KCS C L D K
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMD------SYWHSRCLKCSSCQAQLGDIGTSSYTKS 53
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 29.0 bits (66), Expect = 3.9
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTA 64
L +A+ +A + + G + A
Sbjct: 191 DILVKALNSASNPAIVLGPDVDAA 214
Score = 28.3 bits (64), Expect = 7.6
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
L +A+ +A + + G + A
Sbjct: 191 DILVKALNSASNPAIVLGPDVDAA 214
>3k1i_C HP1076, putative uncharacterized protein; CO-chaperone, chaperone,
flagellar system, helicobacter PYLO flagellum; 2.70A
{Helicobacter pylori}
Length = 178
Score = 28.3 bits (62), Expect = 4.0
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 2 ILDSNDSIG---VLKERLKKI-NKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYT 57
+ + N+S+G VL+ KK+ NK ++ + ++ + +++ E Q + T
Sbjct: 44 MKNINESVGALQVLQIACKKLFNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDT 103
Query: 58 GAGISTAAKIPDYRSNFTIYR-LKKINKVKSRNEELEDKPEILAAKCKQLAEAIQNAK 114
I+ +I + + L + V LE+K + L+E++ N K
Sbjct: 104 QLNIAINDEI----FSMIVVNPLDLLENVGEFQAYLEEKLNEIKELLGYLSESLSNPK 157
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 29.0 bits (66), Expect = 4.1
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTA 64
+ ++ A+ V+ G+ S
Sbjct: 195 DQALALLRKAERPVIVLGSEASRT 218
Score = 28.3 bits (64), Expect = 6.5
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
Q ++ A+ V+ G+ S
Sbjct: 195 DQALALLRKAERPVIVLGSEASRT 218
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 29.2 bits (65), Expect = 4.2
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 417 LDLPDEEYFSKY--EDCENLLESFREMENYQNSTVFVKDEDGVKDEDGVKDEDGVKEEDG 474
LD D +Y ++ C N ++F +N +V D E VK D + D
Sbjct: 239 LDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298
Query: 475 KEEAFDEDKAGGGRESNVRFPP 496
K D K G R+ P
Sbjct: 299 KTPVLDGRKKDGKDSKFTRYVP 320
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia
coli} SCOP: c.46.1.2 c.46.1.2
Length = 280
Score = 28.3 bits (64), Expect = 5.2
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 32 EPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAA 65
PE A ++L + KH++VY + +A
Sbjct: 70 RPETFAVAMRELG--VNQDKHLIVYDEGNLFSAP 101
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.4 bits (64), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 41 KKLAEAIQNAKHVVVYTGAGI 61
K A+ I AK V+Y GAGI
Sbjct: 280 NKAADLINLAKKPVLYVGAGI 300
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 28.7 bits (65), Expect = 5.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 41 KKLAEAIQNAKHVVVYTGAGI--STAAK 66
++ A + AK+ V+ G G+ S ++
Sbjct: 196 REAAAQLVAAKNPVILAGGGVARSGGSE 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase,
ATP complex, calcium stimulation, RECA, DMC1; HET: DNA
ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1
c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A*
1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A*
3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Length = 322
Score = 28.4 bits (63), Expect = 6.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 27 EELEDEPEVLAAKCKKLAEA-IQNAKHVVVYTGAGISTAAKIPD 69
+ L D P V + +KL EA + + T ++ I +
Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISE 46
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix
bundle, carboxylate bridge, metalloenzyme,
oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri}
SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B
3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B
3rne_B 3rnf_B* 3rng_B 2ind_B*
Length = 322
Score = 28.1 bits (62), Expect = 6.8
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 283 SLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWG 339
+LK L+ + L G R E + NL + + + +++ P+ Y
Sbjct: 1 ALKPLKTWSHLAGNRRRPSEYEVVS-TNLHYFTDNPERPWELDSNLPMQTWYKKYCF 56
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4
Length = 157
Score = 27.4 bits (60), Expect = 7.6
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 24 SRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKIN 83
S L K + N ++VV+ + D + T+ LK
Sbjct: 61 SPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDWFSSAK-----DLQIGTTLRSLKDAL 115
Query: 84 KVKSRNEELEDKPEIL 99
L ++P +L
Sbjct: 116 FKWESKTVLRNEPLVL 131
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.0 bits (63), Expect = 8.0
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 95 KPEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
KP + ++ E + A+ V+ G G+ A
Sbjct: 208 KPAASRMQIEKAVEMLIQAERPVIVAGGGVINA 240
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 27.5 bits (60), Expect = 8.6
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 28 ELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGI-----STAAKIPDY-----RSNFTIY 77
E + KK+ E I+ V + + I R + +
Sbjct: 135 EALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQQVLEQREREDT--F 192
Query: 78 RLKKINKVKSRNEELEDK 95
RLK+I E E+
Sbjct: 193 RLKRIKGKIEAREAEEEG 210
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 27.9 bits (62), Expect = 8.9
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 29 LEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSR 88
+ D PE + K +K A A+ V + + FT++R K +
Sbjct: 263 IHDSPEEIRQKLRK---AFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTY 319
Query: 89 N--EELED---KPEILAAKCK-QLAEAIQN 112
EEL+ + ++ K +AE + N
Sbjct: 320 TTFEELKRDFAEGKLHPLDLKNAVAEYLIN 349
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 27.9 bits (63), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTA 64
+ A+ I+NAK V+ G G + A
Sbjct: 204 ARAADLIKNAKRPVIMLGKGAAYA 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 27.5 bits (62), Expect = 9.9
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 174 FVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ Q DLHL +GLP + V G++
Sbjct: 6 LLAFSAKQGASDLHLSAGLP--PMIRVDGDV 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,116,958
Number of extensions: 514617
Number of successful extensions: 1452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1382
Number of HSP's successfully gapped: 114
Length of query: 504
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 406
Effective length of database: 3,965,535
Effective search space: 1610007210
Effective search space used: 1610007210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)