RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10043
(504 letters)
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 144 bits (364), Expect = 2e-40
Identities = 54/264 (20%), Positives = 92/264 (34%), Gaps = 44/264 (16%)
Query: 100 AAKCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGK------------ 147
++ + AKH+V+ +GAG+S + +P +RG G W Q
Sbjct: 2 SSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPS 61
Query: 148 ------DIGNHDLSLAEPTLTHMALYKLYRH----GFVKHVVSQNCDDLHLRSGLPRSVL 197
+ EP H A+ + G V++QN D+LH ++G L
Sbjct: 62 RVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--L 119
Query: 198 SEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARK--------------CSCGE 243
E+HG++ C C V ++ + + A + + CG
Sbjct: 120 LEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGG 179
Query: 244 PLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKER 303
L ++ FGE L P + ++ DL L VG+S V Y +
Sbjct: 180 LLRPHVVWFGEN---LDPAILEEVDRELAHCDLCLVVGTSSVV---YPAAMFAPQVAARG 233
Query: 304 PKLCIVNLQWTPKDDQATLKINGK 327
+ N + TP ++ G
Sbjct: 234 VPVAEFNTETTPATNRFRFHFQGP 257
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 140 bits (354), Expect = 4e-39
Identities = 65/243 (26%), Positives = 95/243 (39%), Gaps = 29/243 (11%)
Query: 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGK-------------- 147
+ ++ AE + +KH VV+TGAGIS + IP +RG G+W +
Sbjct: 4 EIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAF 63
Query: 148 ---DIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
+ D AEP H A+ +L R G VK V++QN D LH R+G R + +
Sbjct: 64 WEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDK 123
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
+ H + R + + ++ FGE L
Sbjct: 124 LDCLDCHETYDWSEFVEDFNKGEIPRC------RKCGSYYVKPRVVLFGE---PLPQRTL 174
Query: 265 DGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKI 324
A + A D + VGSSL V + KK K+ IVN + T D +KI
Sbjct: 175 FEAIEEAKHCDAFMVVGSSLVVYPAAELPY---IAKKAGAKMIIVNAEPTMADPIFDVKI 231
Query: 325 NGK 327
GK
Sbjct: 232 IGK 234
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 138 bits (347), Expect = 4e-38
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 34/242 (14%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDI-------------- 149
++L + I +K++V TGAG+S + IP +RG G+W + +
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 62
Query: 150 ----GNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMS 205
+ A+P H A +L R G +K +++QN DDLH R+G + +HG++
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVI--HLHGSLR 120
Query: 206 VEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWD 265
V C C+ + + CG L ++ GE +L P D
Sbjct: 121 VVRCTSCNNSFEVESAPKIPPL--------PKCDKCGSLLRPGVVWAGE---MLPPDVLD 169
Query: 266 GANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKIN 325
A + +RAD+I+ G+S V K+ + +N TP A +
Sbjct: 170 RAMREVERADVIIVAGTSAVV---QPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLR 226
Query: 326 GK 327
GK
Sbjct: 227 GK 228
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 137 bits (345), Expect = 7e-38
Identities = 74/243 (30%), Positives = 102/243 (41%), Gaps = 30/243 (12%)
Query: 102 KCKQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQG--------------- 146
K K+ + + ++ V TGAGIST + IPD+RG GI+ Q
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 147 --KDIGNHDLSLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLSEVHGNM 204
G + A+P L H+ L KL G ++ V++QN D LH R+G + + E+HGN+
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKK--VIELHGNV 119
Query: 205 SVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNW 264
C C+ V E C + I+ FGE L
Sbjct: 120 EEYYCVRCEKKYTVEDVIKKLES-----SDVPLCDDCNSLIRPNIVFFGEN---LPQDAL 171
Query: 265 DGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKI 324
A + RA L++ +GSSL V Y + KL IVNL TP DD ATLK
Sbjct: 172 REAIGLSSRASLMIVLGSSLVV---YPAAELPLITVRSGGKLVIVNLGETPFDDIATLKY 228
Query: 325 NGK 327
N
Sbjct: 229 NMD 231
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 129 bits (325), Expect = 3e-35
Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 41/236 (17%)
Query: 114 KHVVVYTGAGISTAAKIPDYRGTKGIWTLLQQGKDIGNHD-------------------- 153
V+V TGAGIS + I +R G+W + +D+ +
Sbjct: 2 PRVLVLTGAGISAESGIRTFRAADGLWEEHRV-EDVATPEGFDRDPELVQAFYNARRRQL 60
Query: 154 -LSLAEPTLTHMALYKLYRHGF-VKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAH 211
+P H+AL KL +V+QN D+LH R+G + +HG + C+
Sbjct: 61 QQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTN--VIHMHGELLKVRCSQ 118
Query: 212 CDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDGANKNA 271
V + + C PL ++ FGE PL D
Sbjct: 119 SGQVLDWTGDVTPEDKC--------HCCQFPAPLRPHVVWFGE-----MPLGMDEIYMAL 165
Query: 272 DRADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQATLKINGK 327
AD+ + +G+S V Y + K +NL+ + ++ K G
Sbjct: 166 SMADIFIAIGTSGHV---YPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGP 218
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 131 bits (330), Expect = 6e-35
Identities = 58/333 (17%), Positives = 108/333 (32%), Gaps = 64/333 (19%)
Query: 79 LKKINKVKSRNEELEDKPEILAAKCKQLAEAIQ--NAKHVVVYTGAGISTAAKIPDYRGT 136
+ + S+ E L D+ + + +A +Q + V+ GAGIST+A IPD+R
Sbjct: 12 FSQTLSLGSQKERLLDELTL-----EGVARYMQSERCRRVICLVGAGISTSAGIPDFRSP 66
Query: 137 KGIWTLLQQGKDIGNHD-----------------------LSLAEPTLTHMALYKLYRHG 173
+ + + +PT+ H + L G
Sbjct: 67 STGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKG 126
Query: 174 FVKHVVSQNCDDLHLRSGLPRSVLSEVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAH 233
+ +QN D L +GL + L E HG C ++ + + + E ++
Sbjct: 127 LLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASC-RHEYPLSWMKEKI--FSE 183
Query: 234 QTARKCSCGEPLLDTIIHFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWL 293
T + C + I+ FGE + + + DL+L +G+SL+V +
Sbjct: 184 VTPKCEDCQSLVKPDIVFFGESL---PARFFSCMQSDFLKVDLLLVMGTSLQV---QPFA 237
Query: 294 WGLDRPKKERPKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIV 353
+ + P+L I + D + +
Sbjct: 238 SLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLG-------------------------G 272
Query: 354 NLQWTPKDDQATLKINGKCDVVFKQLMAHLNLD 386
+ + K + G+CD L L
Sbjct: 273 GMDFDSKKAYRDVAWLGECDQGCLALAELLGWK 305
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 115 bits (289), Expect = 1e-29
Identities = 57/322 (17%), Positives = 98/322 (30%), Gaps = 89/322 (27%)
Query: 104 KQLAEAIQ--NAKHVVVYTGAGISTAAKIPDYRGT-KGIWTLLQQGKDIGNHDL------ 154
+++A ++ V+ GAGIST+ IPD+R G++ L + K +
Sbjct: 9 RKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFF 68
Query: 155 ----------------SLAEPTLTHMALYKLYRHGFVKHVVSQNCDDLHLRSGLPRSVLS 198
P+ H L +K V +QN D L ++G+ ++
Sbjct: 69 QSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLII 128
Query: 199 EVHGNMSVEVCAHCDPVKYYWRVFDVTEHTARYAHQTARKCSCGEPLLDTIIHFGEKGVL 258
E HG+ + C C V Y ++ + CGE + I+ FGE
Sbjct: 129 EAHGSFAHCHCIGCGKV--YPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPD 186
Query: 259 LWPLNWDGANKNAD----------RADLILCVGSSLKVLRKYGWLWGLDRPKKERPKLCI 308
+ W ++ + L++ VG+SL V
Sbjct: 187 SFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAV---------------------- 224
Query: 309 VNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERPKLCIVNLQWTP----KDDQA 364
YP L + K + NL+
Sbjct: 225 -------------------YPF-------ASLPEEIPRKVKRVLCNLETVGDFKANKRPT 258
Query: 365 TLKINGKCDVVFKQLMAHLNLD 386
L ++ D +QL+ L
Sbjct: 259 DLIVHQYSDEFAEQLVEELGWQ 280
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 158
Score = 32.6 bits (74), Expect = 0.043
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 36 LAAKCKKLAEAIQNAKHVVVYTGAGISTAAK 66
L K K +A I+ AK ++ G ++
Sbjct: 5 LLEKGKPVANMIKKAKRPLLIVGPDMTDEMF 35
Score = 32.3 bits (73), Expect = 0.069
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 99 LAAKCKQLAEAIQNAKHVVVYTGAGISTAAK 129
L K K +A I+ AK ++ G ++
Sbjct: 5 LLEKGKPVANMIKKAKRPLLIVGPDMTDEMF 35
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 30.2 bits (67), Expect = 0.36
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
L A + + I N V V G+ + A
Sbjct: 5 EASLNAAVDETLKFIANRDKVAVLVGSKLRAA 36
Score = 30.2 bits (67), Expect = 0.38
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
L A + + I N V V G+ + A
Sbjct: 5 EASLNAAVDETLKFIANRDKVAVLVGSKLRAA 36
Score = 28.3 bits (62), Expect = 1.6
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 251 HFGEKGVLLWPLNWDGANKNADRADLILCVGSSLKVLRKYGWLWGLDRPK 300
+ G +++ G K AD ++ + GW D K
Sbjct: 67 NALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKK 116
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase
{Oxalobacter formigenes [TaxId: 847]}
Length = 175
Score = 30.3 bits (67), Expect = 0.37
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELED 94
+ A+ I+NAK V+ G G + A + R+ + + ++ ++
Sbjct: 10 ARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDN 63
Score = 28.0 bits (61), Expect = 1.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAKIPDYRGTKGIW 140
+ A+ I+NAK V+ G G + A + R
Sbjct: 10 ARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEET 46
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 161
Score = 29.3 bits (65), Expect = 0.61
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGISTA 64
L A + +K + +
Sbjct: 12 SACLKAFRDAAENKLAMSKRTALLADFLVLRH 43
Score = 29.3 bits (65), Expect = 0.73
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGISTA 127
L A + +K + +
Sbjct: 12 SACLKAFRDAAENKLAMSKRTALLADFLVLRH 43
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 29.1 bits (64), Expect = 0.74
Identities = 9/82 (10%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKPE--- 97
L +A+ +A + + G + A D + + +
Sbjct: 10 DILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFR 69
Query: 98 -ILAAKCKQLAEAIQNAKHVVV 118
++ A +++ ++ V+V
Sbjct: 70 GLMPAGIAAISQLLEGHDVVLV 91
Score = 27.9 bits (61), Expect = 2.1
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
L +A+ +A + + G + A
Sbjct: 10 DILVKALNSASNPAIVLGPDVDAA 33
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 183
Score = 28.5 bits (62), Expect = 1.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 33 PEVLAAKCKKLAEAIQNAKHVVVYTGAGIS 62
PE +L + + A+ ++Y G G
Sbjct: 13 PEPDVQAVTRLTQTLLAAERPLIYYGIGAR 42
Score = 28.5 bits (62), Expect = 1.6
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 96 PEILAAKCKQLAEAIQNAKHVVVYTGAGIS 125
PE +L + + A+ ++Y G G
Sbjct: 13 PEPDVQAVTRLTQTLLAAERPLIYYGIGAR 42
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana),
chloroplast [TaxId: 3702]}
Length = 179
Score = 28.4 bits (62), Expect = 1.5
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAK 66
+++ I +K V+Y G G ++
Sbjct: 10 EQIVRLISESKKPVLYVGGGCLNSSD 35
Score = 28.0 bits (61), Expect = 1.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAK 129
+Q+ I +K V+Y G G ++
Sbjct: 10 EQIVRLISESKKPVLYVGGGCLNSSD 35
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase
MJ1247 {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 177
Score = 28.2 bits (62), Expect = 1.6
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 7 DSIGVLKERLKKINKVKSRNEELEDEPEVLAAKCKKLAEAIQNAKHVVVYTGAGIS 62
+ + ++ + + K + N+E +++ + L + I AK + ++ G G S
Sbjct: 2 EELDIVSNNILILKKFYT-NDEWKNKLD-------SLIDRIIKAKKIFIF-GVGRS 48
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 28.0 bits (61), Expect = 1.9
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTA 64
++A+ I AK+ + G S
Sbjct: 11 DQVAKLIAQAKNPIFLLGLMASQP 34
Score = 27.6 bits (60), Expect = 2.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
Q+A+ I AK+ + G S
Sbjct: 11 DQVAKLIAQAKNPIFLLGLMASQP 34
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 26.8 bits (59), Expect = 2.9
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 423 EYFSKYEDCENLLESFREMENYQNSTVFVKDE--DGVKDEDGVKDEDGVKEEDGKEEAFD 480
E +D + +++ Y F+ D DE+G+ + E F
Sbjct: 32 EIVRHSKDPLAKFQKQSDVDLYAIKEFFLNPPVTDNYNLVWRDPDEEGILKFLCDEHDFS 91
Query: 481 EDK 483
E++
Sbjct: 92 EER 94
>d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2'-N-acetyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 181
Score = 27.5 bits (60), Expect = 3.1
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 119 YTGAGISTAAKIPDYRGTKGIWTLLQQGKDI--GNHDLSLAEPTLTHMALYKLYRHGFV 175
+ A D+RG + + LL + + G + L + LY G++
Sbjct: 76 LRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYA--SRGWL 132
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase
oxygenase subunit TouE {Pseudomonas stutzeri [TaxId:
316]}
Length = 322
Score = 27.9 bits (62), Expect = 3.1
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 283 SLKVLRKYGWLWGLDRPKKERPKLCIVNLQWTPKDDQA 320
+LK L+ + L G R E ++ NL + + +
Sbjct: 1 ALKPLKTWSHLAGNRRRPSEY-EVVSTNLHYFTDNPER 37
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 171
Score = 27.3 bits (59), Expect = 3.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 42 KLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNF 74
K A+ I AK V+Y GAGI A P
Sbjct: 2 KAADLINLAKKPVLYVGAGILNHADGPRLLKEL 34
Score = 26.2 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 105 QLAEAIQNAKHVVVYTGAGISTAAKIPD 132
+ A+ I AK V+Y GAGI A P
Sbjct: 2 KAADLINLAKKPVLYVGAGILNHADGPR 29
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 177
Score = 26.9 bits (58), Expect = 4.4
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAKIPDYRSNFTIYRLKKINKVKSRNEELEDKP 96
+ A + AKH V+ GA + +P R+ + I ++
Sbjct: 10 DQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHE 65
Score = 26.5 bits (57), Expect = 5.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTA 127
Q A + AKH V+ GA +
Sbjct: 10 DQAAALLAEAKHPVLVVGAAAIRS 33
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus
viridans [TaxId: 1377]}
Length = 177
Score = 26.9 bits (58), Expect = 4.7
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 41 KKLAEAIQNAKHVVVYTGAGISTAAK 66
E + N+K V+Y G G
Sbjct: 12 DAAVELLNNSKRPVIYAGIGTMGHGP 37
Score = 26.2 bits (56), Expect = 7.0
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 104 KQLAEAIQNAKHVVVYTGAGISTAAK 129
E + N+K V+Y G G
Sbjct: 12 DAAVELLNNSKRPVIYAGIGTMGHGP 37
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 26.7 bits (58), Expect = 7.6
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 376 FKQLMAHLNLDIPAYDKRRDPVFYHSSHLIQPEYHTVRKPMLDLPDEEYFSKYED 430
F++L+ + + HL P + ++D D + ++
Sbjct: 260 FRELIIEFSKMARDPQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMDDVVDADE 314
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 138
Score = 25.9 bits (57), Expect = 7.6
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 21/83 (25%)
Query: 339 GLDRPKKERPKLCIVNLQWTPKD----------DQATLKINGKCDVVFKQLMAHLNLDIP 388
L+ K R + NLQW P+ + + + K + F++ + ++ I
Sbjct: 57 DLNEDIKPRVLIAASNLQWRPESTSRVPTLFAGNFSVFSASPK-EAHFQERVTNMKHAIE 115
Query: 389 AYDKRRDPVFYHS-----SHLIQ 406
D FY +++
Sbjct: 116 NIDT-----FYKEAEKKLIQVLK 133
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia
coli [TaxId: 562]}
Length = 368
Score = 26.7 bits (58), Expect = 8.1
Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 10/139 (7%)
Query: 304 PKLCIVNLQWTPKDDQATLKINGKYPVLRKYGWLWGLDRPKKERP--KLCIVNLQWTPKD 361
P + + +A + ++ L RP ++ +++ T
Sbjct: 188 PDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMDTPLTLSH 247
Query: 362 DQATLKINGKCDVVFKQLMAHLNLDIPAYDKRRDPVFYHSSHLIQPEYHTVRKPMLDLPD 421
Q AH L + + + + Q + + + D
Sbjct: 248 AVNM--------AGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHT 299
Query: 422 EEYFSKYEDCENLLESFRE 440
+ ED LLE
Sbjct: 300 GDRRPLTEDTLRLLEKIAP 318
>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease,
C-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 97
Score = 25.2 bits (55), Expect = 8.9
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 389 AYDKRRDPVFYHSSHLIQPEYHTVRKPMLDL 419
Y++ + HS +L++ + +L
Sbjct: 32 LYERGANIDKEHSVYLVKVFPEDSSFLLSEL 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,009,819
Number of extensions: 101203
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 57
Length of query: 504
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,185,626
Effective search space: 492034790
Effective search space used: 492034790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.7 bits)