BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10044
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 144/215 (66%), Gaps = 3/215 (1%)
Query: 9 HAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQT 66
H G +F E+ VG GA RVRDLF AK PC+VFIDEID+VG R + H QT
Sbjct: 79 HISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT 138
Query: 67 INQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLY 126
+NQLL EMDGF EG++V+ ATNR D LD ALLRPGRFD ++ V PPD GR++IL+++
Sbjct: 139 LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198
Query: 127 L-GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185
K ++++++++ +A+ T GF GADLEN+VN+AAL AA +G +TMK E A D+V+
Sbjct: 199 TRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIA 258
Query: 186 GPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSE 220
GP RKS L I AYHE GHAVV+ + E
Sbjct: 259 GPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGE 293
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 144/215 (66%), Gaps = 3/215 (1%)
Query: 9 HAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQT 66
H G +F E+ VG GA RVRDLF AK PC+VFIDEID+VG R + H QT
Sbjct: 79 HISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT 138
Query: 67 INQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLY 126
+NQLL EMDGF EG++V+ ATNR D LD ALLRPGRFD ++ V PPD GR++IL+++
Sbjct: 139 LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198
Query: 127 L-GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185
K ++++++++ +A+ T GF GADLEN+VN+AAL AA +G +TMK E A D+V+
Sbjct: 199 TRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIA 258
Query: 186 GPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSE 220
GP RKS L I AYHE GHAVV+ + E
Sbjct: 259 GPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGE 293
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
Query: 10 AQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTI 67
A G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+
Sbjct: 95 ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 154
Query: 68 NQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
NQLL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++
Sbjct: 155 NQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214
Query: 128 -GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186
GK +++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A D+V+M
Sbjct: 215 RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274
Query: 187 PERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITL 229
P +KS + ITAYHE GHA+ A F + ++ H +T+
Sbjct: 275 PAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADG--VHKVTI 315
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
Query: 10 AQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTI 67
A G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+
Sbjct: 104 ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 163
Query: 68 NQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
NQLL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++
Sbjct: 164 NQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223
Query: 128 -GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186
GK +++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A D+V+M
Sbjct: 224 RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 283
Query: 187 PERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITL 229
P +KS + ITAYHE GHA+ A F + ++ H +T+
Sbjct: 284 PAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADG--VHKVTI 324
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 125/181 (69%), Gaps = 3/181 (1%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTIN 68
G +F E+ VG GA RVRD+F+ AK PC++FIDEID+VG +R + H QT+N
Sbjct: 77 SGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 136
Query: 69 QLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG 128
Q+L EMDGF NEG++V+ ATNR D LD ALLRPGRFD +V V PD GR +IL +++
Sbjct: 137 QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196
Query: 129 KI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGP 187
++ ++ +ID +ARGT GF+GADL N+VN+AAL AA V+M E A+DK++MG
Sbjct: 197 RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGL 256
Query: 188 E 188
E
Sbjct: 257 E 257
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 117/189 (61%), Gaps = 8/189 (4%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTI 67
G EF EV+ G GA RVR LFK A+ R PC+V+IDEID+VG KR+ + + ++N QT+
Sbjct: 72 GAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT-MSGFSNTEEEQTL 130
Query: 68 NQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
NQLL EMDG + V+VL +TNR D LD AL+RPGR D V + P RREI + +L
Sbjct: 131 NQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190
Query: 128 GKI---VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184
+ S LA T GF+GAD+ N+ N+AAL AA +G V EYA ++VL
Sbjct: 191 KSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVL 250
Query: 185 MGPERKSRL 193
G +KS++
Sbjct: 251 AGTAKKSKI 259
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 121/184 (65%), Gaps = 5/184 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTIN 68
G F E+ VG GA RVRDLF+ AK + P ++FIDEID++G R + + QT+N
Sbjct: 77 GSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN 136
Query: 69 QLLAEMDGF-HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
QLLAEMDGF +N V+VL ATNR + LD AL+RPGRFD +V V PD+ GR EIL +++
Sbjct: 137 QLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196
Query: 128 -GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186
G ++ ++++ +A+ T G GADL N++N+AAL A + V ++L+ A ++ + G
Sbjct: 197 KGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAG 256
Query: 187 PERK 190
E+K
Sbjct: 257 LEKK 260
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Query: 10 AQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTI 67
A G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+
Sbjct: 104 ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 163
Query: 68 NQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
NQLL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++
Sbjct: 164 NQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223
Query: 128 -GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179
GK +++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A
Sbjct: 224 RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Query: 10 AQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTI 67
A G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+
Sbjct: 80 ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 139
Query: 68 NQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
NQLL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++
Sbjct: 140 NQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199
Query: 128 -GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179
GK +++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A
Sbjct: 200 RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G E + +G+GA V+D+FK AK++ P ++FIDEID++ AKRT+++ +T+ Q
Sbjct: 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQ 143
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LLAEMDGF V ++GATNR D LD A+LRPGRFD + VP PD GR EIL ++ K
Sbjct: 144 LLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184
+ ++++++++ +A+ T G GA+L+ + +A + A + +VTM A +K++
Sbjct: 204 MNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTIN 68
+GPE + G+ VR++F A+ PCV+F DE+DS+ R ++ A++ IN
Sbjct: 81 KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 140
Query: 69 QLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG 128
Q+L EMDG + V ++GATNR D +D A+LRPGR D + +P PD R IL L
Sbjct: 141 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200
Query: 129 KI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160
K V+K++D++ LA+ T GF+GADL + +A
Sbjct: 201 KSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 4 HPDTN--HAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL-- 59
H D G E + +G+G+R VR+LF A++ P ++F+DEIDS+G+ R
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG 264
Query: 60 HPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGR 119
+T+ +LL ++DGF ++ + ++ ATNR D LD ALLRPGR D ++ PPP R
Sbjct: 265 DSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR 324
Query: 120 REILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178
EIL ++ K+ +++ I++ +A G +GAD++ + +A + A + HVT + E
Sbjct: 325 AEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFEL 384
Query: 179 ARDKVL 184
A KV+
Sbjct: 385 AVGKVM 390
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTIN 68
+GPE + G+ VR++F A+ PCV+F DE+DS+ R ++ A++ IN
Sbjct: 543 KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 602
Query: 69 QLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG 128
Q+L EMDG + V ++GATNR D +D A+LRPGR D + +P PD R IL L
Sbjct: 603 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662
Query: 129 KI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160
K V+K++D++ LA+ T GF+GADL + +A
Sbjct: 663 KSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQL 70
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + H + ++QL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQL 328
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388
Query: 131 -VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
++ ++D++ +A T G GADL + ++AAL+A
Sbjct: 389 KLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTIN 68
+GPE + G+ VR++F A+ PCV+F DE+DS+ R ++ A++ IN
Sbjct: 543 KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 602
Query: 69 QLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG 128
Q+L EMDG + V ++GATNR D +D A+LRPGR D + +P PD R IL L
Sbjct: 603 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662
Query: 129 KI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160
K V+K++D++ LA+ T GF+GADL + +A
Sbjct: 663 KSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQL 70
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + H + ++QL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQL 328
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388
Query: 131 -VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
++ ++D++ +A T G GADL + ++AAL+A
Sbjct: 389 KLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 77
+G+ AR +R++F AK+ PC++F+DE+D++G +R + + +T+ +LL +MDGF
Sbjct: 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315
Query: 78 HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNID 136
++ ATNR D LD ALLRPGR D +V +P P+ GR EI ++ K+ + D
Sbjct: 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD 375
Query: 137 VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183
+ + + GF GAD+ N +A A D H+ L A KV
Sbjct: 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQ 69
P+ ++ +G+GA+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +
Sbjct: 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLE 307
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LL ++DGF ++ V VL ATNR D LD ALLR GR D ++ P P R +IL ++ K
Sbjct: 308 LLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK 367
Query: 130 IVS-KNIDVDTLARGTTGFTGADLENMVNQA---ALRAAIDGVPH 170
+ + +I+ LAR T F GA L+ + +A ALR V H
Sbjct: 368 MTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQ 69
G E + +G G R R +FK A + P +VFIDEID++G KR +NS +T+ +
Sbjct: 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE 308
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LL ++DGF V V+ ATN+ + LD AL+RPGR D ++ PD + +++IL ++ K
Sbjct: 309 LLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184
+ +S++++++TL +GAD++ M +A L A + VT + + A+++V+
Sbjct: 369 MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVM 424
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQL 70
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + H + ++QL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQL 328
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388
Query: 131 -VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
++ ++D++ +A T G GADL + ++AAL+A
Sbjct: 389 KLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQL 70
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + H + ++QL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQL 328
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388
Query: 131 -VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
++ ++D++ +A T G GADL + ++AAL+A
Sbjct: 389 KLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQL 70
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + H + ++QL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQL 328
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388
Query: 131 -VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
++ ++D++ +A T G GADL + ++AAL+A
Sbjct: 389 KLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQL 70
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + H + ++QL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQL 328
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388
Query: 131 -VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
++ ++D++ +A T G GADL + ++AAL+A
Sbjct: 389 KLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQ 69
G EF +G+G R VRD+F+ A++ P ++FIDE+DS+ KR ++ + + +
Sbjct: 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE 298
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LL +MDGF Q+ V V+ ATNR D LD ALLRPGR D ++ P RRE L G
Sbjct: 299 LLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF--PSLRDRRE-RRLIFGT 355
Query: 130 IVSK-----NIDVDTLARGTTGFTGADLENMVNQAALRA 163
I SK D+D+L +GA + ++ +A LRA
Sbjct: 356 IASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRA 394
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 21/166 (12%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70
+GPE + VG+ R VR +F+ AK+ PCV+F DE+D++ +R++ + + +NQL
Sbjct: 76 KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG-ASVRVVNQL 134
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLG 128
L EMDG + V ++ ATNR D +D A+LRPGR D + V +PPP R IL
Sbjct: 135 LTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP--ADRLAIL----- 187
Query: 129 KIVSKN-----IDVDTLARGTTG------FTGADLENMVNQAALRA 163
K ++KN +D D G +TGADL +V +A++ A
Sbjct: 188 KTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICA 233
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G E + VG+GAR VR+LF+ A+ + C++F DEID+VG R + +T+ +
Sbjct: 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE 335
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
L+ ++DGF + V+ ATNR + LD ALLRPGR D +V PD GR I ++
Sbjct: 336 LITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186
+ V + I + ++R TGA+L ++ +A + A T K A DKV+ G
Sbjct: 396 MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78
+G+ + V++LF+ A++ P ++FIDEIDS+ R+ + A + + L +M G
Sbjct: 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA-ARRIKTEFLVQMQGVG 266
Query: 79 -QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSK--NI 135
N+G++VLGATN LD A+ R RF+ + +P P+ R + L+LG +
Sbjct: 267 VDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEA 324
Query: 136 DVDTLARGTTGFTGADLENMVNQAALR 162
D L R T G++GAD+ +V A ++
Sbjct: 325 DFQELGRKTDGYSGADISIIVRDALMQ 351
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78
+G+ + V++LF+ A++ P ++FIDEIDS+ R+ + A + + L +M G
Sbjct: 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE-AARRIKTEFLVQMQGVG 144
Query: 79 -QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDV 137
N+G++VLGATN LD A+ R RF+ + +P P+ R + L+LG + +
Sbjct: 145 VDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEA 202
Query: 138 D--TLARGTTGFTGADLENMVNQAALR 162
D L R T G++GAD+ +V A ++
Sbjct: 203 DFRELGRKTDGYSGADISIIVRDALMQ 229
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 83/147 (56%), Gaps = 7/147 (4%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF- 77
VG+G + VR LF A+ + P V+FIDEIDS+ ++R + H + + + L ++DG
Sbjct: 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGAT 215
Query: 78 -HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK--IVSKN 134
+ ++V+GATNR ++D+A R R + +P P+ + R++I+ + K
Sbjct: 216 TSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSE 273
Query: 135 IDVDTLARGTTGFTGADLENMVNQAAL 161
+++ + + + F+GAD+ + +A+L
Sbjct: 274 EEIEQIVQQSDAFSGADMTQLCREASL 300
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTIN-QLLAEMDGF 77
+G+ + V+ LF A++ P ++FIDE+D++ R A++ I +LL +M+G
Sbjct: 100 WMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG--ESEASRRIKTELLVQMNGV 157
Query: 78 -HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK--IVSKN 134
+ ++GV+VLGATN LD A+ R RF+ + +P PD R + ++ +G V
Sbjct: 158 GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTK 215
Query: 135 IDVDTLARGTTGFTGADLENMVNQAALR 162
D TL T G++G+D+ +V A ++
Sbjct: 216 EDYRTLGAMTEGYSGSDIAVVVKDALMQ 243
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 7/146 (4%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79
VG+G + VR LF A++ P ++FID++DS+ +R H + + + L E DG
Sbjct: 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQS 247
Query: 80 --NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVS--KNI 135
++ V+V+GATNR +LD+A+LR RF V V P+ R +L L K S
Sbjct: 248 AGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK 305
Query: 136 DVDTLARGTTGFTGADLENMVNQAAL 161
++ LAR T G++G+DL + AAL
Sbjct: 306 ELAQLARMTDGYSGSDLTALAKDAAL 331
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 10/148 (6%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79
VG G + VR LF A+ P ++FIDE+DS+ ++R++S H + + + L E DG
Sbjct: 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPG 153
Query: 80 N---EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNID 136
N + +VVL ATNR +LD+A LR RF V V PD R +L+ L K S +D
Sbjct: 154 NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LD 210
Query: 137 VDT---LARGTTGFTGADLENMVNQAAL 161
+ LA+ T G++G+DL + AAL
Sbjct: 211 TEALRRLAKITDGYSGSDLTALAKDAAL 238
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTIN-QLLAEMDGF 77
+G+ + V+ LF A++ P ++FID++D++ R A++ I +LL +M+G
Sbjct: 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGV 148
Query: 78 -HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK--IVSKN 134
+ ++GV+VLGATN LD A+ R RF+ + +P PD R + ++ +G V
Sbjct: 149 GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTK 206
Query: 135 IDVDTLARGTTGFTGADLENMVNQAALR 162
D TL T G++G+D+ +V A ++
Sbjct: 207 EDYRTLGAMTEGYSGSDIAVVVKDALMQ 234
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTIN-QLLAEMDGF 77
+G+ + V+ LF A++ P ++FID++D++ R A++ I +LL +M+G
Sbjct: 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGV 181
Query: 78 -HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG---KIVSK 133
+ ++GV+VLGATN LD A+ R RF+ + +P PD R + ++ +G +++K
Sbjct: 182 GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTK 239
Query: 134 NIDVDTLARGTTGFTGADLENMVNQAALR 162
D TL T G++G+D+ +V A ++
Sbjct: 240 E-DYRTLGAMTEGYSGSDIAVVVKDALMQ 267
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTIN-QLLAEMDGF 77
+G+ + V+ LF A++ P ++FID++D++ R A++ I +LL +M+G
Sbjct: 109 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGV 166
Query: 78 -HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK--IVSKN 134
+ ++GV+VLGATN LD A+ R RF+ + +P PD R + ++ +G V
Sbjct: 167 GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTK 224
Query: 135 IDVDTLARGTTGFTGADLENMVNQAALR 162
D TL T G++G+D+ +V A ++
Sbjct: 225 EDYRTLGAMTEGYSGSDIAVVVKDALMQ 252
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 112 PPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPH 170
PPP+ R +IL ++ K +++ I++ +A G +GA+++ + +A A + H
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 171 VTMKYLEYARDKV 183
VT + E A KV
Sbjct: 61 VTQEDFEXAVAKV 73
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 114 PDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVT 172
P+ R +IL ++ K+ +++ I++ +A G +GA+++ + +A + A + HVT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 173 MKYLEYARDKVL 184
+ E A KV+
Sbjct: 71 QEDFEMAVAKVM 82
>pdb|2Z3T|A Chain A, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|B Chain B, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|C Chain C, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|D Chain D, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3U|A Chain A, Crystal Structure Of Chromopyrrolic Acid Bound Cytochrome
P450 Stap (Cyp245a1)
pdb|3A1L|A Chain A, Crystal Structure Of 11,11'-Dichlorochromopyrrolic Acid
Bound Cytochrome P450 Stap (Cyp245a1)
Length = 425
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 135 IDVDTLARGTTGF-------TGADLENMVNQAALRAAIDGVPHV--TMKYLEYARDKVLM 185
+DV A GF GA L + LRA +DG+P + +EYA D V
Sbjct: 345 LDVHRAAERQVGFGLGIHYCLGATLARAEAEIGLRALLDGIPALGRGAHEVEYADDMVFH 404
Query: 186 GPER 189
GP R
Sbjct: 405 GPTR 408
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 59 LHPYANQTINQLLAEMDGFHQNEGVVVL----GATNRRDDLDKALLRPGRFDIEVNVPPP 114
L YA + ++ E H N+G V+L A NR ++ KA+ D VPP
Sbjct: 223 LQEYAFSMLTEI-TERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDF--YVPPK 279
Query: 115 DYTGRREILDLYLGKIVSKN 134
++ G + +LG ++ KN
Sbjct: 280 EFCGDNGAMIAWLGLLMHKN 299
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 59 LHPYANQTINQLLAEMDGFHQNEGVVVL----GATNRRDDLDKALLRPGRFDIEVNVPPP 114
L YA + ++ E H N+G V+L A NR ++ KA+ D VPP
Sbjct: 228 LQEYAFSMLTEI-TERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDF--YVPPK 284
Query: 115 DYTGRREILDLYLGKIVSKN 134
++ G + +LG ++ KN
Sbjct: 285 EFCGDNGAMIAWLGLLMHKN 304
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 ANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREI 122
A + I + LAE G NE + L A ++ + + L DIE VP +
Sbjct: 428 AFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGL------DIEAEVPAVKDMLEAGV 481
Query: 123 LDLYLGK 129
LD YLGK
Sbjct: 482 LDTYLGK 488
>pdb|1T2N|A Chain A, Structure Of A Thermostable Triple Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANR 107
>pdb|3D2A|A Chain A, Structure Of 1-17a4, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANR 107
>pdb|1T4M|A Chain A, Structure Of A Thermostable Double Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANR 107
>pdb|2QXT|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXT|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXU|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|C Chain C, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|D Chain D, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|E Chain E, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|F Chain F, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|G Chain G, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|H Chain H, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
Length = 179
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 56 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANR 105
>pdb|1I6W|A Chain A, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1ISP|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase At 1.3a
Resolution
pdb|1R4Z|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R4Z|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
Length = 181
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANR 107
>pdb|3QZU|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
pdb|3QZU|B Chain B, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
Length = 181
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANR 107
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 114 PDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVT 172
PD GR I ++ + V + I + ++R TGA+L ++ +A + A T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 173 MKYLEYARDKVLMGPERKS 191
K A DKV+ G ++ S
Sbjct: 68 EKDFLKAVDKVISGYKKFS 86
>pdb|3QMM|A Chain A, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3QMM|B Chain B, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKYLDGGNKVANVVTLGGANR 107
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKYLDGGNKVANVVTLGGANR 107
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 43 FIDEI-DSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91
F+ ++ D GAK+ + V H + +DG ++ VV LG NR
Sbjct: 58 FVQKVLDETGAKKVDIVAHSMGGANTLYYIKYLDGGNKVANVVTLGGANR 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,237,621
Number of Sequences: 62578
Number of extensions: 299059
Number of successful extensions: 719
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 59
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)