Query psy10044
Match_columns 235
No_of_seqs 202 out of 2034
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 16:25:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734|consensus 100.0 1.2E-56 2.6E-61 398.4 16.0 227 3-232 361-588 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 1.9E-50 4.1E-55 369.9 19.6 228 3-232 207-437 (596)
3 KOG0731|consensus 100.0 3.5E-49 7.6E-54 367.4 19.5 227 3-231 368-599 (774)
4 COG1222 RPT1 ATP-dependent 26S 100.0 1.6E-47 3.5E-52 327.5 19.7 184 3-186 209-395 (406)
5 KOG0730|consensus 100.0 2E-44 4.4E-49 327.6 19.2 183 3-186 492-677 (693)
6 PRK10733 hflB ATP-dependent me 100.0 3E-43 6.6E-48 332.0 24.4 228 3-232 209-439 (644)
7 KOG0733|consensus 100.0 1.5E-43 3.2E-48 319.0 18.1 184 3-187 569-773 (802)
8 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-42 3.3E-47 319.4 24.1 228 3-232 112-342 (495)
9 CHL00176 ftsH cell division pr 100.0 8.7E-43 1.9E-47 326.5 22.0 227 3-232 240-469 (638)
10 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.3E-42 2.8E-47 343.1 22.0 216 3-230 1654-1919(2281)
11 KOG0733|consensus 100.0 6.4E-41 1.4E-45 302.0 18.7 210 3-213 247-525 (802)
12 KOG0738|consensus 100.0 5.6E-40 1.2E-44 283.2 16.0 183 3-187 269-473 (491)
13 KOG0736|consensus 100.0 1.2E-39 2.6E-44 299.8 18.6 183 4-186 730-935 (953)
14 KOG0728|consensus 100.0 3.2E-38 7E-43 259.6 15.9 183 3-185 205-390 (404)
15 KOG0727|consensus 100.0 1.5E-36 3.3E-41 250.0 15.2 183 3-185 213-398 (408)
16 KOG0739|consensus 100.0 6.2E-37 1.3E-41 257.0 10.8 161 3-166 190-353 (439)
17 KOG0726|consensus 100.0 4.8E-37 1E-41 257.1 10.0 184 3-186 243-429 (440)
18 COG0464 SpoVK ATPases of the A 100.0 2.5E-35 5.5E-40 271.6 18.9 183 3-186 300-486 (494)
19 KOG0735|consensus 100.0 1.5E-35 3.3E-40 270.9 16.9 163 3-166 725-888 (952)
20 KOG0652|consensus 100.0 1E-35 2.3E-40 246.1 13.6 183 3-185 229-414 (424)
21 KOG0729|consensus 100.0 1.3E-35 2.8E-40 246.2 12.8 189 3-191 235-426 (435)
22 COG1223 Predicted ATPase (AAA+ 100.0 4.6E-35 1E-39 241.8 16.0 180 3-184 175-356 (368)
23 CHL00195 ycf46 Ycf46; Provisio 100.0 1.7E-34 3.6E-39 263.5 20.7 182 3-187 283-467 (489)
24 PTZ00454 26S protease regulato 100.0 1.9E-34 4.2E-39 257.8 20.5 184 3-186 203-389 (398)
25 TIGR01243 CDC48 AAA family ATP 100.0 2E-34 4.3E-39 276.5 21.7 184 3-186 511-713 (733)
26 KOG0737|consensus 100.0 9.6E-35 2.1E-39 250.0 14.4 161 3-166 151-314 (386)
27 PRK03992 proteasome-activating 100.0 3.6E-33 7.9E-38 249.9 20.6 186 3-188 189-377 (389)
28 PTZ00361 26 proteosome regulat 100.0 8.5E-33 1.8E-37 249.1 18.0 184 3-186 241-427 (438)
29 KOG0730|consensus 100.0 4.1E-33 8.8E-38 254.0 14.3 210 3-225 242-455 (693)
30 TIGR01242 26Sp45 26S proteasom 100.0 7.7E-30 1.7E-34 226.9 20.1 181 3-183 180-363 (364)
31 PLN00020 ribulose bisphosphate 100.0 7.1E-30 1.5E-34 222.0 18.1 200 3-213 172-393 (413)
32 KOG0741|consensus 100.0 3.6E-31 7.7E-36 236.0 9.7 181 7-187 285-494 (744)
33 KOG0651|consensus 100.0 4.9E-31 1.1E-35 222.4 8.2 182 3-184 190-374 (388)
34 KOG0740|consensus 100.0 4E-30 8.7E-35 227.9 13.1 182 3-187 210-408 (428)
35 TIGR03689 pup_AAA proteasome A 100.0 5.6E-29 1.2E-33 227.3 19.2 197 5-201 252-497 (512)
36 KOG0732|consensus 100.0 5.5E-28 1.2E-32 231.2 13.9 185 5-190 330-532 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 4.1E-26 8.8E-31 219.2 21.2 209 3-212 236-466 (733)
38 KOG0735|consensus 99.9 1.5E-21 3.1E-26 179.7 12.7 221 4-229 460-692 (952)
39 KOG0736|consensus 99.8 2.6E-20 5.7E-25 172.7 15.5 210 3-215 455-688 (953)
40 COG0464 SpoVK ATPases of the A 99.8 3.8E-18 8.3E-23 157.6 16.0 195 6-202 44-245 (494)
41 KOG0742|consensus 99.7 2.5E-17 5.5E-22 144.2 14.2 172 3-179 408-608 (630)
42 PF00004 AAA: ATPase family as 99.7 2.6E-17 5.7E-22 124.8 11.6 109 3-113 22-132 (132)
43 KOG0744|consensus 99.6 3.3E-15 7.1E-20 127.6 10.4 174 3-180 210-411 (423)
44 CHL00181 cbbX CbbX; Provisiona 99.5 7.2E-13 1.6E-17 114.3 15.8 151 3-163 90-254 (287)
45 TIGR02639 ClpA ATP-dependent C 99.5 3.1E-13 6.6E-18 130.3 13.2 175 3-187 237-433 (731)
46 PRK11034 clpA ATP-dependent Cl 99.5 1E-12 2.2E-17 126.2 16.1 176 2-187 240-437 (758)
47 KOG0743|consensus 99.5 4.5E-13 9.7E-18 119.2 10.6 127 27-156 277-413 (457)
48 TIGR02881 spore_V_K stage V sp 99.4 1E-11 2.3E-16 105.8 14.6 151 3-164 73-239 (261)
49 TIGR02880 cbbX_cfxQ probable R 99.3 1.8E-11 3.9E-16 105.6 12.7 151 4-164 90-254 (284)
50 TIGR03345 VI_ClpV1 type VI sec 99.3 9E-11 1.9E-15 114.6 14.7 168 2-180 241-428 (852)
51 TIGR00763 lon ATP-dependent pr 99.2 8.3E-11 1.8E-15 114.2 13.1 167 3-181 371-584 (775)
52 PRK10865 protein disaggregatio 99.1 2.4E-10 5.2E-15 111.8 9.4 117 3-130 233-357 (857)
53 CHL00095 clpC Clp protease ATP 99.1 1.3E-09 2.9E-14 106.5 13.7 152 3-165 234-403 (821)
54 TIGR03346 chaperone_ClpB ATP-d 99.1 2.9E-09 6.3E-14 104.4 15.0 153 2-165 227-398 (852)
55 PRK00149 dnaA chromosomal repl 98.9 2E-08 4.3E-13 92.1 14.4 166 4-184 178-350 (450)
56 PRK00080 ruvB Holliday junctio 98.9 7.9E-08 1.7E-12 84.5 17.2 141 26-183 92-250 (328)
57 PRK00411 cdc6 cell division co 98.9 4.6E-08 1E-12 87.8 15.1 149 26-185 125-284 (394)
58 TIGR00635 ruvB Holliday juncti 98.9 1.3E-07 2.8E-12 82.1 16.7 131 38-183 81-229 (305)
59 TIGR00362 DnaA chromosomal rep 98.9 5.3E-08 1.2E-12 88.0 14.7 165 4-184 166-338 (405)
60 PF01434 Peptidase_M41: Peptid 98.9 2.5E-09 5.4E-14 88.5 5.4 59 172-232 1-59 (213)
61 TIGR02928 orc1/cdc6 family rep 98.9 9.1E-08 2E-12 85.0 15.0 148 25-184 115-275 (365)
62 PRK14088 dnaA chromosomal repl 98.8 9.5E-08 2.1E-12 87.3 14.7 166 4-184 160-333 (440)
63 COG0466 Lon ATP-dependent Lon 98.8 2.5E-08 5.3E-13 93.5 8.9 174 3-188 374-589 (782)
64 COG2256 MGS1 ATPase related to 98.8 1.6E-07 3.4E-12 83.1 13.2 152 3-185 72-240 (436)
65 TIGR02902 spore_lonB ATP-depen 98.7 8.4E-08 1.8E-12 89.6 11.5 96 83-183 235-332 (531)
66 PRK14086 dnaA chromosomal repl 98.7 5.8E-07 1.3E-11 84.4 14.4 166 4-185 344-517 (617)
67 PRK10787 DNA-binding ATP-depen 98.7 4.1E-07 9E-12 88.4 13.7 169 3-184 373-583 (784)
68 PTZ00112 origin recognition co 98.6 8E-07 1.7E-11 85.8 13.8 169 4-186 816-1009(1164)
69 KOG2004|consensus 98.6 2.1E-07 4.6E-12 87.2 8.2 114 4-129 463-598 (906)
70 PRK13342 recombination factor 98.6 5.2E-06 1.1E-10 75.3 17.0 149 4-184 61-220 (413)
71 PRK14087 dnaA chromosomal repl 98.5 3.2E-06 6.8E-11 77.5 15.3 164 4-183 171-348 (450)
72 COG0542 clpA ATP-binding subun 98.5 2.1E-06 4.5E-11 82.3 14.5 154 2-165 224-395 (786)
73 PRK12422 chromosomal replicati 98.5 2.9E-06 6.2E-11 77.7 14.1 167 4-184 169-344 (445)
74 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.7E-06 3.7E-11 71.6 11.6 153 4-180 66-225 (226)
75 PRK14961 DNA polymerase III su 98.5 6.2E-06 1.4E-10 73.6 14.7 136 24-181 101-242 (363)
76 TIGR02397 dnaX_nterm DNA polym 98.4 6.3E-06 1.4E-10 72.9 13.8 135 24-180 99-239 (355)
77 PRK05563 DNA polymerase III su 98.4 7.7E-06 1.7E-10 76.9 14.6 148 4-179 87-240 (559)
78 PRK06645 DNA polymerase III su 98.4 8.1E-06 1.8E-10 75.7 13.7 151 5-180 97-253 (507)
79 PRK06893 DNA replication initi 98.4 5.2E-06 1.1E-10 69.4 10.9 132 38-180 91-227 (229)
80 PRK07994 DNA polymerase III su 98.3 1.7E-05 3.6E-10 75.4 14.8 148 5-180 88-241 (647)
81 PRK12323 DNA polymerase III su 98.3 1E-05 2.2E-10 76.5 12.4 132 5-160 93-230 (700)
82 PRK07940 DNA polymerase III su 98.3 7.5E-06 1.6E-10 73.8 11.0 112 24-155 99-214 (394)
83 PRK14962 DNA polymerase III su 98.3 1.3E-05 2.8E-10 73.8 12.8 149 6-182 87-241 (472)
84 PRK07003 DNA polymerase III su 98.3 2.1E-05 4.5E-10 75.5 14.1 131 6-160 89-225 (830)
85 PRK14956 DNA polymerase III su 98.3 2.7E-05 5.8E-10 71.5 14.3 135 24-180 103-243 (484)
86 PRK14960 DNA polymerase III su 98.3 2E-05 4.4E-10 74.6 13.8 148 4-179 86-239 (702)
87 PRK05342 clpX ATP-dependent pr 98.3 1.6E-05 3.5E-10 72.0 12.5 161 3-165 132-380 (412)
88 PRK04195 replication factor C 98.2 2.5E-05 5.3E-10 72.4 13.5 149 4-179 64-221 (482)
89 PRK12402 replication factor C 98.2 3.1E-05 6.8E-10 67.8 13.5 121 39-182 126-248 (337)
90 COG0593 DnaA ATPase involved i 98.2 5.2E-05 1.1E-09 68.2 14.7 166 5-186 144-316 (408)
91 PRK14958 DNA polymerase III su 98.2 1.9E-05 4.1E-10 73.5 12.2 148 5-180 88-241 (509)
92 TIGR03015 pepcterm_ATPase puta 98.2 2E-05 4.4E-10 66.9 11.4 135 34-183 119-266 (269)
93 PRK05201 hslU ATP-dependent pr 98.2 5.3E-06 1.1E-10 74.7 7.8 84 39-124 250-345 (443)
94 PRK07764 DNA polymerase III su 98.2 4.3E-05 9.3E-10 74.7 14.2 106 37-160 119-226 (824)
95 PRK13341 recombination factor 98.2 8E-05 1.7E-09 72.0 15.8 153 4-183 77-247 (725)
96 PRK14964 DNA polymerase III su 98.2 3.3E-05 7.2E-10 71.3 12.5 149 3-179 83-237 (491)
97 PRK14951 DNA polymerase III su 98.1 5E-05 1.1E-09 72.0 13.7 134 24-180 106-246 (618)
98 PRK04132 replication factor C 98.1 5E-05 1.1E-09 74.1 13.9 120 4-146 596-723 (846)
99 TIGR00382 clpX endopeptidase C 98.1 4.4E-05 9.6E-10 69.1 12.6 161 3-165 140-386 (413)
100 COG1474 CDC6 Cdc6-related prot 98.1 9.8E-05 2.1E-09 66.0 14.4 134 37-184 122-266 (366)
101 KOG2028|consensus 98.1 9.5E-05 2.1E-09 65.2 13.7 173 6-207 192-389 (554)
102 PRK08727 hypothetical protein; 98.1 3.8E-05 8.2E-10 64.4 11.1 139 27-182 84-230 (233)
103 PRK14953 DNA polymerase III su 98.1 8.2E-05 1.8E-09 68.9 13.8 134 25-180 102-241 (486)
104 TIGR02640 gas_vesic_GvpN gas v 98.1 0.00015 3.3E-09 61.8 14.4 126 39-183 106-257 (262)
105 PRK08903 DnaA regulatory inact 98.1 8E-05 1.7E-09 61.9 12.1 128 38-181 90-224 (227)
106 PRK14959 DNA polymerase III su 98.1 5.7E-05 1.2E-09 71.4 12.2 121 38-180 119-241 (624)
107 TIGR02030 BchI-ChlI magnesium 98.1 0.00012 2.6E-09 64.7 13.6 132 39-184 132-310 (337)
108 PHA02544 44 clamp loader, smal 98.1 5.9E-05 1.3E-09 65.7 11.6 107 4-129 68-175 (316)
109 PRK05642 DNA replication initi 98.0 9.5E-05 2.1E-09 62.0 12.2 152 5-180 74-232 (234)
110 PRK08691 DNA polymerase III su 98.0 0.0001 2.2E-09 70.3 13.1 135 24-180 101-241 (709)
111 TIGR00390 hslU ATP-dependent p 98.0 2.5E-05 5.3E-10 70.5 8.1 84 39-124 248-343 (441)
112 PRK08451 DNA polymerase III su 98.0 0.00023 4.9E-09 66.5 14.6 133 24-179 99-238 (535)
113 PRK13407 bchI magnesium chelat 98.0 0.00022 4.8E-09 62.9 13.8 129 40-183 130-306 (334)
114 PF05496 RuvB_N: Holliday junc 98.0 3.1E-05 6.7E-10 64.2 7.8 133 3-158 74-224 (233)
115 PRK14963 DNA polymerase III su 98.0 0.00023 5E-09 66.2 14.3 148 4-180 84-237 (504)
116 PRK06647 DNA polymerase III su 98.0 0.00021 4.6E-09 67.3 13.9 134 25-180 102-241 (563)
117 PF00308 Bac_DnaA: Bacterial d 98.0 6.5E-05 1.4E-09 62.4 9.4 143 4-161 64-214 (219)
118 PRK09111 DNA polymerase III su 97.9 0.00023 4.9E-09 67.5 14.1 148 5-180 101-254 (598)
119 PRK14965 DNA polymerase III su 97.9 0.00013 2.8E-09 69.0 12.4 146 5-179 88-240 (576)
120 PRK14949 DNA polymerase III su 97.9 0.0003 6.5E-09 68.8 14.9 118 25-160 102-225 (944)
121 PRK08084 DNA replication initi 97.9 0.00013 2.9E-09 61.2 11.1 127 40-180 99-233 (235)
122 TIGR00678 holB DNA polymerase 97.9 8.6E-05 1.9E-09 59.9 9.5 85 25-126 79-167 (188)
123 PRK14970 DNA polymerase III su 97.9 0.00023 5E-09 63.5 13.0 135 24-180 90-230 (367)
124 PRK11034 clpA ATP-dependent Cl 97.9 0.00012 2.7E-09 71.0 11.6 145 4-162 513-714 (758)
125 PRK14957 DNA polymerase III su 97.9 0.00038 8.2E-09 65.2 13.9 133 26-180 103-241 (546)
126 CHL00081 chlI Mg-protoporyphyr 97.9 0.00042 9.1E-09 61.5 13.4 133 39-185 145-324 (350)
127 PRK14952 DNA polymerase III su 97.9 0.0003 6.5E-09 66.5 13.1 148 5-179 87-240 (584)
128 PRK06305 DNA polymerase III su 97.9 0.00026 5.6E-09 65.0 12.5 122 37-180 120-243 (451)
129 PRK05896 DNA polymerase III su 97.8 0.00021 4.7E-09 67.3 12.0 147 5-179 88-240 (605)
130 PRK09087 hypothetical protein; 97.8 0.00013 2.7E-09 61.0 9.4 127 40-183 89-222 (226)
131 PRK14969 DNA polymerase III su 97.8 0.00031 6.8E-09 65.7 12.5 135 24-180 101-241 (527)
132 COG2255 RuvB Holliday junction 97.8 0.00057 1.2E-08 58.4 12.7 144 25-185 92-253 (332)
133 TIGR01650 PD_CobS cobaltochela 97.8 5.6E-05 1.2E-09 66.2 6.8 147 3-161 88-282 (327)
134 TIGR02639 ClpA ATP-dependent C 97.8 0.0003 6.4E-09 68.5 12.3 143 4-162 509-710 (731)
135 cd00009 AAA The AAA+ (ATPases 97.8 0.00023 4.9E-09 53.5 9.2 95 4-112 47-150 (151)
136 TIGR02903 spore_lon_C ATP-depe 97.8 0.00078 1.7E-08 64.3 14.4 98 82-184 323-431 (615)
137 PRK06620 hypothetical protein; 97.8 0.00027 5.9E-09 58.5 10.0 122 39-180 86-213 (214)
138 TIGR02442 Cob-chelat-sub cobal 97.8 0.00047 1E-08 66.0 12.8 167 4-184 85-305 (633)
139 PRK07133 DNA polymerase III su 97.7 0.00062 1.3E-08 65.5 13.5 134 24-179 100-239 (725)
140 PRK14950 DNA polymerase III su 97.7 0.00076 1.6E-08 64.0 13.4 134 25-180 103-242 (585)
141 PRK14948 DNA polymerase III su 97.7 0.0011 2.3E-08 63.3 14.2 119 22-158 101-225 (620)
142 smart00350 MCM minichromosome 97.7 0.0013 2.7E-08 61.5 14.5 132 39-184 301-505 (509)
143 COG2812 DnaX DNA polymerase II 97.6 0.00033 7.2E-09 64.9 9.7 122 23-162 100-227 (515)
144 PRK05707 DNA polymerase III su 97.6 0.0007 1.5E-08 59.7 10.9 104 24-146 88-195 (328)
145 TIGR02031 BchD-ChlD magnesium 97.6 0.00079 1.7E-08 63.9 11.9 131 40-184 86-259 (589)
146 PRK00440 rfc replication facto 97.6 0.001 2.2E-08 57.8 11.6 119 39-180 103-223 (319)
147 TIGR00764 lon_rel lon-related 97.6 0.00046 1E-08 65.6 10.1 100 82-183 268-391 (608)
148 CHL00195 ycf46 Ycf46; Provisio 97.5 0.003 6.5E-08 58.6 14.3 121 39-179 82-204 (489)
149 PF05621 TniB: Bacterial TniB 97.5 0.00093 2E-08 57.8 10.3 143 25-178 132-284 (302)
150 COG1224 TIP49 DNA helicase TIP 97.5 0.0016 3.4E-08 57.4 11.1 145 22-184 274-433 (450)
151 PLN03025 replication factor C 97.5 0.0012 2.5E-08 58.0 10.4 118 38-178 99-218 (319)
152 PRK14955 DNA polymerase III su 97.4 0.0018 3.9E-08 58.6 11.5 139 24-180 109-254 (397)
153 PRK09112 DNA polymerase III su 97.4 0.0013 2.7E-08 58.6 10.0 93 37-146 140-232 (351)
154 PRK14954 DNA polymerase III su 97.4 0.0046 1E-07 58.9 14.0 138 25-180 110-254 (620)
155 KOG1514|consensus 97.4 0.0016 3.4E-08 61.8 10.5 150 26-187 495-659 (767)
156 PRK06964 DNA polymerase III su 97.3 0.00097 2.1E-08 59.0 8.2 86 24-126 114-203 (342)
157 TIGR03346 chaperone_ClpB ATP-d 97.3 0.004 8.7E-08 61.7 13.3 146 4-163 623-825 (852)
158 PRK07471 DNA polymerase III su 97.3 0.0014 3.1E-08 58.5 9.1 103 25-146 124-230 (365)
159 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0032 7E-08 62.2 12.1 141 4-161 624-828 (852)
160 PRK14971 DNA polymerase III su 97.3 0.0045 9.7E-08 59.1 12.4 134 24-179 103-242 (614)
161 PRK06871 DNA polymerase III su 97.2 0.0025 5.5E-08 56.0 9.5 86 24-126 89-178 (325)
162 TIGR00368 Mg chelatase-related 97.2 0.0086 1.9E-07 55.7 13.4 128 39-181 296-497 (499)
163 PRK07993 DNA polymerase III su 97.2 0.003 6.6E-08 55.8 9.9 84 25-125 91-178 (334)
164 COG1220 HslU ATP-dependent pro 97.1 0.0018 3.9E-08 56.8 7.5 94 27-124 241-346 (444)
165 KOG0741|consensus 97.1 0.0033 7.2E-08 58.0 8.9 119 3-125 562-684 (744)
166 CHL00095 clpC Clp protease ATP 97.0 0.0072 1.6E-07 59.7 11.8 141 4-160 567-778 (821)
167 PRK06090 DNA polymerase III su 97.0 0.0048 1E-07 54.1 9.5 103 3-125 72-178 (319)
168 PRK09862 putative ATP-dependen 97.0 0.016 3.5E-07 53.9 13.4 128 40-181 296-490 (506)
169 COG0714 MoxR-like ATPases [Gen 97.0 0.0024 5.3E-08 56.2 7.6 74 40-127 114-203 (329)
170 PRK08769 DNA polymerase III su 97.0 0.0079 1.7E-07 52.8 10.3 105 24-149 95-203 (319)
171 KOG1942|consensus 97.0 0.013 2.9E-07 50.6 11.2 155 13-185 270-440 (456)
172 PRK11331 5-methylcytosine-spec 97.0 0.0044 9.4E-08 56.7 8.7 73 27-113 259-357 (459)
173 PRK13406 bchD magnesium chelat 97.0 0.011 2.5E-07 55.9 11.8 131 40-184 95-251 (584)
174 smart00382 AAA ATPases associa 96.8 0.0017 3.7E-08 48.1 4.4 86 21-114 61-147 (148)
175 PF05673 DUF815: Protein of un 96.8 0.03 6.6E-07 47.2 12.0 107 4-130 80-210 (249)
176 KOG2680|consensus 96.8 0.043 9.3E-07 47.7 12.9 130 38-185 288-431 (454)
177 PRK05564 DNA polymerase III su 96.7 0.019 4.1E-07 50.1 10.2 103 25-146 76-182 (313)
178 COG1067 LonB Predicted ATP-dep 96.6 0.031 6.8E-07 53.4 11.8 101 82-184 276-400 (647)
179 KOG2227|consensus 96.6 0.019 4.1E-07 52.4 9.7 153 24-187 240-419 (529)
180 COG3267 ExeA Type II secretory 96.6 0.075 1.6E-06 45.0 12.5 137 27-177 119-267 (269)
181 PRK07276 DNA polymerase III su 96.6 0.04 8.6E-07 47.8 11.3 110 24-157 86-199 (290)
182 PRK10865 protein disaggregatio 96.5 0.019 4.1E-07 56.9 10.3 109 4-129 626-781 (857)
183 PRK07399 DNA polymerase III su 96.5 0.037 8.1E-07 48.5 10.8 105 26-149 108-216 (314)
184 PF01637 Arch_ATPase: Archaeal 96.5 0.0067 1.4E-07 49.6 5.8 116 22-147 101-227 (234)
185 PRK13765 ATP-dependent proteas 96.4 0.02 4.4E-07 54.8 9.6 168 3-181 180-398 (637)
186 COG1239 ChlI Mg-chelatase subu 96.4 0.041 8.9E-07 49.6 10.9 75 40-128 146-233 (423)
187 PF07724 AAA_2: AAA domain (Cd 96.4 0.0096 2.1E-07 47.5 6.2 92 4-98 32-136 (171)
188 PF13177 DNA_pol3_delta2: DNA 96.4 0.012 2.5E-07 46.5 6.4 72 25-113 85-160 (162)
189 PRK08058 DNA polymerase III su 96.3 0.019 4.2E-07 50.6 8.0 84 25-125 93-180 (329)
190 PRK14700 recombination factor 96.2 0.07 1.5E-06 46.2 10.6 99 80-186 6-118 (300)
191 PRK13531 regulatory ATPase Rav 96.2 0.17 3.7E-06 46.9 13.6 131 40-185 109-285 (498)
192 COG0470 HolB ATPase involved i 96.0 0.037 8.1E-07 47.9 8.6 102 4-124 73-178 (325)
193 COG0542 clpA ATP-binding subun 96.0 0.017 3.8E-07 56.0 6.7 139 5-160 550-751 (786)
194 PF07728 AAA_5: AAA domain (dy 95.9 0.014 3E-07 44.4 4.7 54 38-105 65-139 (139)
195 KOG0745|consensus 95.8 0.026 5.7E-07 51.1 6.7 109 3-114 250-386 (564)
196 PHA02244 ATPase-like protein 95.8 0.12 2.6E-06 46.3 10.5 76 31-119 174-266 (383)
197 PRK06581 DNA polymerase III su 95.6 0.093 2E-06 44.3 8.6 90 24-130 71-164 (263)
198 PRK08699 DNA polymerase III su 95.6 0.068 1.5E-06 47.1 8.2 86 23-125 94-183 (325)
199 PRK10365 transcriptional regul 95.4 0.096 2.1E-06 47.6 8.9 154 3-180 189-386 (441)
200 KOG0989|consensus 95.4 0.37 8E-06 42.0 11.6 97 40-157 131-229 (346)
201 PRK05917 DNA polymerase III su 95.3 0.26 5.6E-06 42.7 10.7 74 24-114 77-154 (290)
202 PF07693 KAP_NTPase: KAP famil 95.2 0.15 3.3E-06 44.2 9.3 81 37-130 171-266 (325)
203 COG1221 PspF Transcriptional r 94.9 0.074 1.6E-06 48.1 6.3 145 4-165 130-311 (403)
204 COG1219 ClpX ATP-dependent pro 94.8 0.14 3.1E-06 44.8 7.6 110 3-115 121-258 (408)
205 PF05729 NACHT: NACHT domain 94.8 0.26 5.6E-06 37.8 8.6 88 33-129 76-165 (166)
206 TIGR02974 phageshock_pspF psp 94.7 0.23 4.9E-06 43.8 9.0 143 3-163 49-233 (329)
207 PTZ00111 DNA replication licen 94.6 0.92 2E-05 45.2 13.5 38 147-184 768-805 (915)
208 TIGR01818 ntrC nitrogen regula 94.6 0.4 8.7E-06 43.9 10.7 125 39-180 229-381 (463)
209 PRK11361 acetoacetate metaboli 94.4 0.2 4.4E-06 45.7 8.4 124 39-180 238-390 (457)
210 PF00493 MCM: MCM2/3/5 family 94.3 0.12 2.7E-06 45.6 6.3 131 39-183 122-326 (331)
211 TIGR01817 nifA Nif-specific re 94.3 0.57 1.2E-05 44.0 11.1 154 3-177 246-439 (534)
212 PRK05818 DNA polymerase III su 94.3 0.34 7.3E-06 41.3 8.6 59 39-114 89-147 (261)
213 TIGR02915 PEP_resp_reg putativ 94.2 0.13 2.9E-06 46.8 6.7 154 3-177 189-383 (445)
214 KOG1051|consensus 94.2 0.18 3.9E-06 49.9 7.6 147 5-162 244-409 (898)
215 PRK15115 response regulator Gl 94.1 0.5 1.1E-05 43.0 10.2 154 3-180 184-381 (444)
216 PRK07132 DNA polymerase III su 93.9 0.27 5.9E-06 42.8 7.6 71 38-125 90-160 (299)
217 COG2607 Predicted ATPase (AAA+ 93.9 3.3 7.2E-05 35.1 13.6 107 4-130 113-242 (287)
218 PRK05022 anaerobic nitric oxid 93.9 0.89 1.9E-05 42.5 11.5 157 3-177 237-437 (509)
219 PRK11388 DNA-binding transcrip 93.9 0.76 1.6E-05 44.2 11.3 156 4-180 376-568 (638)
220 PRK08485 DNA polymerase III su 93.7 0.29 6.4E-06 40.0 6.9 86 24-125 39-137 (206)
221 KOG2228|consensus 93.6 0.24 5.2E-06 43.7 6.7 95 19-127 113-219 (408)
222 TIGR00602 rad24 checkpoint pro 93.6 1 2.2E-05 43.4 11.3 121 24-161 171-326 (637)
223 PF06068 TIP49: TIP49 C-termin 93.5 0.14 3E-06 45.8 5.1 73 39-129 279-363 (398)
224 PRK11608 pspF phage shock prot 93.5 0.48 1E-05 41.7 8.6 141 3-162 56-239 (326)
225 PF12846 AAA_10: AAA-like doma 93.4 0.24 5.2E-06 42.1 6.4 71 37-120 219-294 (304)
226 TIGR02329 propionate_PrpR prop 93.4 0.92 2E-05 42.7 10.7 159 3-179 262-466 (526)
227 PRK15429 formate hydrogenlyase 93.2 1.1 2.3E-05 43.6 11.1 141 3-162 426-608 (686)
228 KOG2035|consensus 93.1 4.2 9.1E-05 35.2 13.2 121 5-146 89-220 (351)
229 PRK07452 DNA polymerase III su 93.1 1.8 3.8E-05 37.8 11.5 138 27-181 46-197 (326)
230 COG1241 MCM2 Predicted ATPase 93.0 0.9 1.9E-05 43.9 10.1 39 146-184 555-593 (682)
231 PRK15424 propionate catabolism 92.6 1 2.2E-05 42.5 9.7 157 3-177 277-479 (538)
232 PF05707 Zot: Zonular occluden 92.6 0.25 5.4E-06 40.0 5.0 68 38-114 79-146 (193)
233 COG2204 AtoC Response regulato 92.5 0.79 1.7E-05 42.3 8.7 153 4-177 192-385 (464)
234 PRK10820 DNA-binding transcrip 92.2 1.9 4.2E-05 40.4 11.2 152 4-176 255-447 (520)
235 PRK05574 holA DNA polymerase I 91.7 5.9 0.00013 34.5 13.1 129 39-183 77-213 (340)
236 PF12775 AAA_7: P-loop contain 91.5 0.5 1.1E-05 40.5 5.9 82 39-130 101-196 (272)
237 PF13304 AAA_21: AAA domain; P 91.3 0.7 1.5E-05 37.4 6.4 65 20-96 237-303 (303)
238 TIGR01128 holA DNA polymerase 91.2 6.9 0.00015 33.4 12.8 127 39-183 47-178 (302)
239 PRK10923 glnG nitrogen regulat 91.1 1.5 3.3E-05 40.2 9.1 124 39-180 233-385 (469)
240 PRK08116 hypothetical protein; 91.0 0.78 1.7E-05 39.3 6.6 104 4-124 142-257 (268)
241 PF13173 AAA_14: AAA domain 90.6 2.2 4.7E-05 31.8 8.1 94 6-118 31-126 (128)
242 KOG1969|consensus 90.6 5.6 0.00012 38.8 12.2 141 3-165 350-517 (877)
243 PF14516 AAA_35: AAA-like doma 90.1 2.5 5.3E-05 37.3 9.1 110 25-147 111-232 (331)
244 KOG0482|consensus 89.1 3.5 7.6E-05 38.6 9.4 140 40-186 441-641 (721)
245 COG3604 FhlA Transcriptional r 89.1 1.7 3.7E-05 40.3 7.4 149 4-163 274-456 (550)
246 KOG0478|consensus 87.4 9.5 0.00021 37.0 11.3 78 40-128 528-627 (804)
247 PF01078 Mg_chelatase: Magnesi 87.2 0.79 1.7E-05 37.7 3.7 39 40-90 108-157 (206)
248 KOG0480|consensus 86.9 4.5 9.8E-05 38.8 8.8 139 39-187 443-647 (764)
249 PF07726 AAA_3: ATPase family 86.8 1.2 2.7E-05 33.8 4.3 52 40-105 64-129 (131)
250 PF00931 NB-ARC: NB-ARC domain 86.1 3.4 7.3E-05 35.0 7.3 110 24-155 88-202 (287)
251 PF00158 Sigma54_activat: Sigm 85.7 7.6 0.00017 30.7 8.6 89 3-106 49-155 (168)
252 PF12774 AAA_6: Hydrolytic ATP 85.2 6.1 0.00013 33.1 8.2 103 3-124 56-177 (231)
253 smart00763 AAA_PrkA PrkA AAA d 84.8 3.4 7.4E-05 37.0 6.7 75 40-129 238-329 (361)
254 PF14532 Sigma54_activ_2: Sigm 84.6 2.3 5E-05 32.2 5.0 79 5-112 50-136 (138)
255 PF05872 DUF853: Bacterial pro 84.4 1.6 3.5E-05 40.1 4.6 88 24-122 236-330 (502)
256 PF13401 AAA_22: AAA domain; P 83.8 3.5 7.7E-05 30.3 5.7 53 24-89 73-125 (131)
257 COG0606 Predicted ATPase with 83.0 2.3 4.9E-05 39.3 5.0 65 40-118 285-383 (490)
258 KOG1051|consensus 82.4 4.7 0.0001 40.3 7.2 73 5-91 620-710 (898)
259 COG3829 RocR Transcriptional r 82.1 5.8 0.00012 37.3 7.3 163 4-183 296-498 (560)
260 PF13654 AAA_32: AAA domain; P 81.0 7.3 0.00016 36.6 7.7 101 82-184 388-507 (509)
261 PRK13898 type IV secretion sys 80.4 8.7 0.00019 38.1 8.5 99 5-117 607-713 (800)
262 KOG0732|consensus 79.5 1.5 3.2E-05 44.3 2.7 105 9-129 623-728 (1080)
263 cd01120 RecA-like_NTPases RecA 79.0 4 8.7E-05 30.8 4.6 62 28-93 75-138 (165)
264 PRK07952 DNA replication prote 78.8 5.8 0.00013 33.5 5.8 76 4-92 127-205 (244)
265 KOG1968|consensus 77.4 3.8 8.1E-05 40.9 4.8 102 41-161 431-534 (871)
266 PRK04841 transcriptional regul 77.1 19 0.0004 35.8 9.7 107 26-149 108-220 (903)
267 TIGR02237 recomb_radB DNA repa 77.1 3.9 8.6E-05 33.0 4.2 66 25-91 84-149 (209)
268 PLN03210 Resistant to P. syrin 75.9 29 0.00064 35.9 11.0 73 36-129 294-366 (1153)
269 PRK13539 cytochrome c biogenes 75.4 15 0.00032 29.7 7.2 67 31-117 138-204 (207)
270 COG4565 CitB Response regulato 74.8 34 0.00074 28.4 8.9 87 25-128 33-119 (224)
271 PF02969 TAF: TATA box binding 72.6 8.7 0.00019 25.6 4.2 31 151-181 36-66 (66)
272 COG2909 MalT ATP-dependent tra 72.5 20 0.00044 35.6 8.2 109 25-149 115-228 (894)
273 smart00427 H2B Histone H2B. 71.4 23 0.00049 25.1 6.3 60 144-214 28-87 (89)
274 PRK09183 transposase/IS protei 70.5 10 0.00022 32.2 5.3 47 4-51 130-177 (259)
275 COG2874 FlaH Predicted ATPases 70.4 9.7 0.00021 31.7 4.9 71 21-101 106-176 (235)
276 KOG0990|consensus 70.4 29 0.00063 30.7 8.0 74 38-128 131-204 (360)
277 PHA00012 I assembly protein 69.5 9.8 0.00021 33.8 5.0 57 38-101 81-137 (361)
278 cd06161 S2P-M50_SpoIVFB SpoIVF 67.2 7.4 0.00016 31.9 3.7 27 201-231 40-66 (208)
279 PF03969 AFG1_ATPase: AFG1-lik 67.1 14 0.0003 33.1 5.6 40 40-92 129-168 (362)
280 PF05272 VirE: Virulence-assoc 66.1 9.5 0.00021 31.1 4.1 63 40-113 97-169 (198)
281 PRK09361 radB DNA repair and r 65.7 5.8 0.00013 32.5 2.8 84 37-120 106-197 (225)
282 PF14247 DUF4344: Domain of un 64.9 4.8 0.0001 33.5 2.1 14 202-215 95-108 (220)
283 PF04298 Zn_peptidase_2: Putat 64.8 3.7 8.1E-05 34.1 1.4 12 200-211 90-101 (222)
284 PTZ00463 histone H2B; Provisio 64.5 31 0.00067 25.6 6.0 60 144-214 55-114 (117)
285 PF10236 DAP3: Mitochondrial r 64.3 98 0.0021 27.0 11.3 105 26-130 141-280 (309)
286 PF00808 CBFD_NFYB_HMF: Histon 64.2 12 0.00026 24.4 3.6 30 151-180 36-65 (65)
287 COG1106 Predicted ATPases [Gen 63.9 11 0.00024 33.9 4.3 71 20-101 252-322 (371)
288 PLN00158 histone H2B; Provisio 63.8 39 0.00084 25.1 6.4 60 144-214 54-113 (116)
289 COG1373 Predicted ATPase (AAA+ 63.4 78 0.0017 28.7 9.8 76 30-121 86-161 (398)
290 PRK13873 conjugal transfer ATP 63.1 40 0.00087 33.6 8.5 98 4-115 599-704 (811)
291 cd03283 ABC_MutS-like MutS-lik 62.4 18 0.00039 29.3 5.0 61 25-96 92-152 (199)
292 COG1116 TauB ABC-type nitrate/ 61.5 18 0.00039 30.6 4.9 87 13-114 121-220 (248)
293 PF00413 Peptidase_M10: Matrix 61.2 4.4 9.5E-05 30.9 1.2 12 200-211 106-117 (154)
294 PRK08181 transposase; Validate 61.2 25 0.00054 30.1 5.9 75 4-92 134-209 (269)
295 COG2401 ABC-type ATPase fused 60.4 9.3 0.0002 35.1 3.2 54 32-96 519-572 (593)
296 TIGR00929 VirB4_CagE type IV s 60.3 43 0.00093 32.9 8.2 49 36-95 627-675 (785)
297 PRK13853 type IV secretion sys 60.0 37 0.0008 33.7 7.6 96 6-115 593-696 (789)
298 cd07979 TAF9 TATA Binding Prot 60.0 33 0.00071 25.5 5.7 39 147-185 30-68 (117)
299 COG2738 Predicted Zn-dependent 59.4 5.1 0.00011 32.6 1.3 17 142-158 35-51 (226)
300 TIGR02858 spore_III_AA stage I 59.0 41 0.00089 28.8 6.9 66 27-112 183-256 (270)
301 cd01124 KaiC KaiC is a circadi 58.6 47 0.001 25.8 6.8 58 27-93 84-141 (187)
302 COG3899 Predicted ATPase [Gene 58.5 1E+02 0.0022 31.1 10.4 113 33-157 149-262 (849)
303 PRK13830 conjugal transfer pro 58.2 48 0.001 33.1 8.1 97 6-115 617-721 (818)
304 cd04279 ZnMc_MMP_like_1 Zinc-d 58.1 5.6 0.00012 30.8 1.3 12 200-211 105-116 (156)
305 PRK12377 putative replication 58.1 35 0.00075 28.9 6.2 76 4-92 129-206 (248)
306 smart00803 TAF TATA box bindin 57.9 18 0.0004 23.8 3.6 32 150-181 34-65 (65)
307 cd06160 S2P-M50_like_2 Unchara 57.9 14 0.0003 29.8 3.5 28 200-231 42-69 (183)
308 COG1136 SalX ABC-type antimicr 57.7 58 0.0013 27.2 7.3 67 28-112 150-216 (226)
309 COG1485 Predicted ATPase [Gene 57.7 16 0.00035 32.6 4.2 39 40-91 132-170 (367)
310 PF13335 Mg_chelatase_2: Magne 57.7 33 0.00071 24.5 5.1 38 144-181 57-94 (96)
311 TIGR03783 Bac_Flav_CT_G Bacter 57.3 78 0.0017 31.7 9.3 99 4-115 626-735 (829)
312 cd03216 ABC_Carb_Monos_I This 56.8 38 0.00081 26.3 5.9 57 28-96 90-146 (163)
313 PF13481 AAA_25: AAA domain; P 56.5 13 0.00028 29.4 3.2 30 24-53 126-156 (193)
314 cd03286 ABC_MSH6_euk MutS6 hom 56.2 38 0.00081 28.0 6.0 67 24-102 97-163 (218)
315 KOG0479|consensus 56.1 23 0.0005 34.0 5.0 61 40-111 400-481 (818)
316 PRK06585 holA DNA polymerase I 55.5 1.4E+02 0.0031 26.0 12.9 72 107-182 135-209 (343)
317 PRK06526 transposase; Provisio 55.1 31 0.00067 29.2 5.4 43 38-92 159-201 (254)
318 PF13872 AAA_34: P-loop contai 55.1 41 0.00089 29.4 6.2 63 23-89 157-219 (303)
319 COG4555 NatA ABC-type Na+ tran 55.0 45 0.00097 27.8 6.0 69 20-101 131-201 (245)
320 cd01121 Sms Sms (bacterial rad 54.8 20 0.00043 32.3 4.4 30 25-54 145-174 (372)
321 cd04268 ZnMc_MMP_like Zinc-dep 54.4 7.4 0.00016 30.1 1.4 13 199-211 94-106 (165)
322 PRK13541 cytochrome c biogenes 53.5 77 0.0017 25.2 7.3 55 31-97 134-188 (195)
323 cd00076 H4 Histone H4, one of 53.4 33 0.00071 24.1 4.4 34 150-183 45-78 (85)
324 cd03227 ABC_Class2 ABC-type Cl 52.5 32 0.00069 26.6 4.8 47 38-96 99-145 (162)
325 cd01394 radB RadB. The archaea 52.4 23 0.00051 28.7 4.2 89 26-115 92-188 (218)
326 cd03287 ABC_MSH3_euk MutS3 hom 52.4 27 0.00059 28.9 4.6 61 24-96 98-158 (222)
327 KOG3928|consensus 52.4 1.9E+02 0.0042 26.6 11.5 150 3-157 277-458 (461)
328 PRK09694 helicase Cas3; Provis 52.3 23 0.00049 35.7 4.7 52 37-100 438-489 (878)
329 cd04278 ZnMc_MMP Zinc-dependen 51.9 5.9 0.00013 30.7 0.5 12 200-211 108-119 (157)
330 cd01393 recA_like RecA is a b 51.6 20 0.00044 29.1 3.7 56 35-90 111-167 (226)
331 cd06164 S2P-M50_SpoIVFB_CBS Sp 50.2 18 0.00039 30.1 3.2 27 201-231 55-81 (227)
332 PRK13543 cytochrome c biogenes 50.1 68 0.0015 25.9 6.6 56 30-97 147-202 (214)
333 PTZ00015 histone H4; Provision 50.1 37 0.0008 24.7 4.4 34 150-183 62-95 (102)
334 PF00488 MutS_V: MutS domain V 49.9 68 0.0015 26.7 6.6 65 21-97 107-171 (235)
335 cd03281 ABC_MSH5_euk MutS5 hom 49.9 1.4E+02 0.0029 24.4 8.4 56 36-99 106-161 (213)
336 PRK13540 cytochrome c biogenes 49.9 69 0.0015 25.5 6.6 55 30-96 137-191 (200)
337 TIGR01166 cbiO cobalt transpor 49.7 58 0.0013 25.7 6.0 51 31-93 138-188 (190)
338 cd01122 GP4d_helicase GP4d_hel 49.6 29 0.00062 29.2 4.4 57 30-89 132-188 (271)
339 PRK10263 DNA translocase FtsK; 49.4 27 0.00059 36.5 4.8 75 40-125 1142-1218(1355)
340 PF07034 ORC3_N: Origin recogn 49.1 80 0.0017 27.8 7.3 75 38-127 199-279 (330)
341 PF13265 DUF4056: Protein of u 48.9 61 0.0013 27.6 6.0 92 94-186 111-215 (270)
342 COG1066 Sms Predicted ATP-depe 48.6 58 0.0013 29.9 6.2 101 23-127 153-256 (456)
343 cd07981 TAF12 TATA Binding Pro 48.5 51 0.0011 22.1 4.7 34 150-183 34-67 (72)
344 cd03282 ABC_MSH4_euk MutS4 hom 48.4 79 0.0017 25.7 6.7 66 18-97 91-156 (204)
345 cd03240 ABC_Rad50 The catalyti 47.8 44 0.00095 27.1 5.1 64 31-112 132-196 (204)
346 PRK13538 cytochrome c biogenes 47.6 82 0.0018 25.2 6.7 54 31-96 140-193 (204)
347 cd03262 ABC_HisP_GlnQ_permease 47.6 43 0.00094 26.9 5.0 53 31-95 146-198 (213)
348 cd04277 ZnMc_serralysin_like Z 46.8 12 0.00025 29.9 1.5 13 199-211 113-125 (186)
349 PLN00035 histone H4; Provision 46.5 46 0.00099 24.2 4.4 34 150-183 61-94 (103)
350 PF14350 Beta_protein: Beta pr 46.5 1E+02 0.0022 27.1 7.6 83 8-100 126-209 (347)
351 cd03215 ABC_Carb_Monos_II This 45.9 52 0.0011 25.9 5.2 54 31-96 115-168 (182)
352 PRK13537 nodulation ABC transp 45.8 50 0.0011 28.6 5.4 55 31-97 149-203 (306)
353 cd03239 ABC_SMC_head The struc 45.5 1.2E+02 0.0026 24.0 7.2 45 37-93 115-159 (178)
354 smart00235 ZnMc Zinc-dependent 45.4 12 0.00026 28.2 1.3 10 202-211 89-98 (140)
355 PF04465 DUF499: Protein of un 45.1 40 0.00086 34.6 5.1 25 25-53 90-114 (1035)
356 COG1674 FtsK DNA segregation A 45.1 14 0.00031 37.0 2.1 75 39-124 640-715 (858)
357 cd03218 ABC_YhbG The ABC trans 44.7 51 0.0011 26.9 5.1 55 30-96 143-197 (232)
358 TIGR02012 tigrfam_recA protein 44.6 29 0.00063 30.6 3.7 67 24-90 119-190 (321)
359 PRK00409 recombination and DNA 44.5 1.1E+02 0.0023 30.5 8.0 89 25-126 396-497 (782)
360 PRK11629 lolD lipoprotein tran 44.5 43 0.00094 27.4 4.7 55 31-96 156-210 (233)
361 cd03226 ABC_cobalt_CbiO_domain 44.3 50 0.0011 26.4 4.9 53 31-95 137-189 (205)
362 COG1131 CcmA ABC-type multidru 44.2 58 0.0013 28.1 5.5 69 16-97 134-202 (293)
363 TIGR00960 3a0501s02 Type II (G 43.9 54 0.0012 26.4 5.1 53 31-95 149-201 (216)
364 PRK08939 primosomal protein Dn 43.8 44 0.00096 29.1 4.8 75 4-92 184-261 (306)
365 cd03231 ABC_CcmA_heme_exporter 43.7 1.1E+02 0.0024 24.4 6.9 55 31-97 136-190 (201)
366 smart00487 DEXDc DEAD-like hel 43.6 34 0.00073 26.1 3.7 61 39-113 130-190 (201)
367 PRK06921 hypothetical protein; 43.6 62 0.0013 27.5 5.5 43 4-49 146-188 (266)
368 COG3284 AcoR Transcriptional a 43.6 31 0.00067 33.0 3.9 108 40-162 409-539 (606)
369 PRK13891 conjugal transfer pro 43.3 1.4E+02 0.003 30.1 8.6 71 32-115 681-756 (852)
370 TIGR02673 FtsE cell division A 42.6 59 0.0013 26.1 5.1 54 31-96 148-201 (214)
371 cd03292 ABC_FtsE_transporter F 42.3 86 0.0019 25.1 6.0 54 31-96 147-200 (214)
372 smart00534 MUTSac ATPase domai 42.2 90 0.0019 24.7 6.0 47 37-93 77-123 (185)
373 TIGR02746 TraC-F-type type-IV 42.2 76 0.0017 31.3 6.7 67 37-114 636-707 (797)
374 TIGR03740 galliderm_ABC gallid 42.1 88 0.0019 25.4 6.1 55 30-96 134-188 (223)
375 COG1121 ZnuC ABC-type Mn/Zn tr 41.9 88 0.0019 26.7 6.1 56 28-95 147-202 (254)
376 cd06159 S2P-M50_PDZ_Arch Uncha 41.8 20 0.00044 30.6 2.3 19 201-219 120-138 (263)
377 KOG2170|consensus 41.7 2.5E+02 0.0054 24.9 11.7 142 32-187 172-323 (344)
378 TIGR00634 recN DNA repair prot 41.7 1.2E+02 0.0026 28.8 7.7 75 18-112 440-516 (563)
379 cd03235 ABC_Metallic_Cations A 41.6 66 0.0014 25.9 5.3 53 31-95 143-195 (213)
380 PHA00520 packaging NTPase P4 41.5 28 0.0006 30.4 3.0 54 38-91 183-236 (330)
381 cd03247 ABCC_cytochrome_bd The 40.8 1.6E+02 0.0036 22.8 7.3 55 28-95 106-160 (178)
382 PRK10869 recombination and rep 40.7 2.3E+02 0.0049 27.0 9.3 75 18-112 430-506 (553)
383 PRK13644 cbiO cobalt transport 40.7 84 0.0018 26.6 6.0 53 31-95 147-199 (274)
384 PRK10619 histidine/lysine/argi 40.6 61 0.0013 27.0 5.1 54 31-96 163-216 (257)
385 COG4098 comFA Superfamily II D 40.5 45 0.00097 29.9 4.2 50 40-101 204-253 (441)
386 cd00984 DnaB_C DnaB helicase C 40.4 65 0.0014 26.4 5.1 52 34-89 119-170 (242)
387 PF09820 AAA-ATPase_like: Pred 40.2 49 0.0011 28.4 4.4 32 24-55 127-160 (284)
388 TIGR02211 LolD_lipo_ex lipopro 40.1 61 0.0013 26.2 4.9 55 30-95 151-205 (221)
389 cd03269 ABC_putative_ATPase Th 40.0 69 0.0015 25.6 5.1 53 31-95 139-191 (210)
390 cd03276 ABC_SMC6_euk Eukaryoti 39.9 1.2E+02 0.0025 24.4 6.4 52 36-96 129-180 (198)
391 PF04665 Pox_A32: Poxvirus A32 39.9 2.3E+02 0.005 23.9 9.1 73 38-127 98-170 (241)
392 KOG2383|consensus 39.9 42 0.00092 30.7 4.0 40 40-92 195-234 (467)
393 PRK13643 cbiO cobalt transport 39.8 60 0.0013 27.8 5.0 55 30-96 154-208 (288)
394 cd03238 ABC_UvrA The excision 39.7 93 0.002 24.7 5.7 67 28-113 95-163 (176)
395 TIGR01189 ccmA heme ABC export 39.6 1E+02 0.0022 24.5 6.0 54 31-96 138-191 (198)
396 COG2036 HHT1 Histones H3 and H 39.5 69 0.0015 22.8 4.3 36 150-185 51-86 (91)
397 KOG4284|consensus 39.4 34 0.00073 33.3 3.4 66 23-100 150-218 (980)
398 cd00983 recA RecA is a bacter 39.4 54 0.0012 29.0 4.6 67 24-90 119-190 (325)
399 cd03225 ABC_cobalt_CbiO_domain 39.3 68 0.0015 25.7 5.0 54 31-96 145-198 (211)
400 PRK11823 DNA repair protein Ra 39.1 49 0.0011 30.5 4.5 30 25-54 143-172 (446)
401 cd03268 ABC_BcrA_bacitracin_re 38.8 1.1E+02 0.0024 24.4 6.1 54 31-96 137-190 (208)
402 COG1127 Ttg2A ABC-type transpo 38.8 88 0.0019 26.6 5.5 54 28-92 153-206 (263)
403 PRK11231 fecE iron-dicitrate t 38.7 70 0.0015 26.6 5.1 54 31-96 149-202 (255)
404 cd03266 ABC_NatA_sodium_export 38.6 1E+02 0.0022 24.7 6.0 54 31-96 147-200 (218)
405 cd01127 TrwB Bacterial conjuga 38.2 3E+02 0.0065 24.9 9.4 75 37-129 269-351 (410)
406 PF11372 DUF3173: Domain of un 37.8 1E+02 0.0023 20.0 4.6 33 135-169 4-36 (59)
407 cd04327 ZnMc_MMP_like_3 Zinc-d 37.5 20 0.00044 29.0 1.6 11 201-211 94-104 (198)
408 PRK11264 putative amino-acid A 37.4 77 0.0017 26.2 5.2 53 31-95 155-207 (250)
409 cd03228 ABCC_MRP_Like The MRP 37.0 1.1E+02 0.0024 23.6 5.8 53 31-96 107-159 (171)
410 cd03232 ABC_PDR_domain2 The pl 36.9 1.2E+02 0.0026 24.0 6.0 53 29-93 117-169 (192)
411 PRK10908 cell division protein 36.9 82 0.0018 25.5 5.2 54 31-96 148-201 (222)
412 COG1484 DnaC DNA replication p 36.9 1.1E+02 0.0023 25.9 5.9 77 4-93 133-210 (254)
413 PHA00350 putative assembly pro 36.8 56 0.0012 29.7 4.4 64 38-107 81-158 (399)
414 TIGR01188 drrA daunorubicin re 36.8 80 0.0017 27.2 5.3 55 30-96 134-188 (302)
415 PF13175 AAA_15: AAA ATPase do 36.8 83 0.0018 27.8 5.6 43 41-94 372-414 (415)
416 COG1117 PstB ABC-type phosphat 36.7 1.4E+02 0.0031 25.1 6.3 53 26-90 155-207 (253)
417 cd03298 ABC_ThiQ_thiamine_tran 36.6 47 0.001 26.7 3.6 55 31-96 139-193 (211)
418 smart00576 BTP Bromodomain tra 36.4 1E+02 0.0022 20.8 4.7 37 147-183 35-71 (77)
419 PRK06835 DNA replication prote 36.4 1.2E+02 0.0026 26.8 6.3 46 4-51 211-259 (329)
420 cd03219 ABC_Mj1267_LivG_branch 36.3 84 0.0018 25.6 5.2 54 31-96 154-207 (236)
421 PF03215 Rad17: Rad17 cell cyc 36.1 3.7E+02 0.008 25.4 9.8 112 38-164 132-269 (519)
422 PRK04296 thymidine kinase; Pro 36.1 1.5E+02 0.0032 23.6 6.5 58 37-112 77-140 (190)
423 cd06162 S2P-M50_PDZ_SREBP Ster 35.8 28 0.00062 30.0 2.2 26 201-230 137-162 (277)
424 PRK13638 cbiO cobalt transport 35.5 80 0.0017 26.6 5.0 54 31-96 147-200 (271)
425 cd03243 ABC_MutS_homologs The 35.5 1.5E+02 0.0032 23.7 6.4 61 24-97 96-156 (202)
426 PF02291 TFIID-31kDa: Transcri 35.4 61 0.0013 24.6 3.7 37 147-183 41-77 (129)
427 PRK10895 lipopolysaccharide AB 35.3 86 0.0019 25.8 5.1 54 31-96 148-201 (241)
428 TIGR01978 sufC FeS assembly AT 35.3 83 0.0018 25.8 5.0 55 30-96 154-208 (243)
429 cd01125 repA Hexameric Replica 35.2 87 0.0019 25.8 5.1 27 24-50 97-123 (239)
430 PRK09493 glnQ glutamine ABC tr 35.1 92 0.002 25.5 5.2 54 31-96 147-200 (240)
431 COG1618 Predicted nucleotide k 35.0 1.6E+02 0.0035 23.6 6.1 81 30-129 93-174 (179)
432 TIGR02562 cas3_yersinia CRISPR 34.8 49 0.0011 34.0 3.9 50 38-99 593-642 (1110)
433 COG1119 ModF ABC-type molybden 34.7 1.4E+02 0.0031 25.4 6.2 62 29-101 180-242 (257)
434 cd03280 ABC_MutS2 MutS2 homolo 34.6 2.4E+02 0.0051 22.5 7.4 54 25-91 97-150 (200)
435 PF00125 Histone: Core histone 34.5 69 0.0015 21.1 3.6 32 150-181 42-73 (75)
436 PRK07914 hypothetical protein; 34.3 3.1E+02 0.0067 23.8 9.1 107 67-181 81-192 (320)
437 PRK11614 livF leucine/isoleuci 34.2 1.2E+02 0.0026 24.8 5.8 54 31-96 148-201 (237)
438 TIGR03771 anch_rpt_ABC anchore 34.2 93 0.002 25.3 5.1 52 32-95 125-176 (223)
439 PRK09580 sufC cysteine desulfu 34.1 1.3E+02 0.0029 24.7 6.1 55 30-96 155-209 (248)
440 cd03246 ABCC_Protease_Secretio 33.9 1.5E+02 0.0032 23.0 6.0 56 28-95 104-159 (173)
441 cd03241 ABC_RecN RecN ATPase i 33.5 2.4E+02 0.0053 23.8 7.7 43 38-93 192-234 (276)
442 TIGR03873 F420-0_ABC_ATP propo 33.4 1E+02 0.0022 25.7 5.3 54 31-96 148-201 (256)
443 TIGR01277 thiQ thiamine ABC tr 33.4 58 0.0013 26.2 3.7 52 33-95 141-192 (213)
444 PRK11475 DNA-binding transcrip 33.4 2.6E+02 0.0057 22.7 8.2 88 27-129 26-115 (207)
445 cd03251 ABCC_MsbA MsbA is an e 33.4 1.8E+02 0.0039 23.6 6.7 53 30-95 148-200 (234)
446 cd03233 ABC_PDR_domain1 The pl 33.4 1.7E+02 0.0036 23.4 6.4 56 30-95 128-183 (202)
447 cd03267 ABC_NatA_like Similar 33.3 98 0.0021 25.5 5.1 54 31-95 164-217 (236)
448 PRK15056 manganese/iron transp 33.0 1.4E+02 0.0031 25.1 6.1 54 31-96 153-206 (272)
449 COG3950 Predicted ATP-binding 33.0 30 0.00065 31.1 2.0 16 37-52 294-309 (440)
450 PF13191 AAA_16: AAA ATPase do 32.9 30 0.00064 26.8 1.8 15 37-51 149-163 (185)
451 PRK13649 cbiO cobalt transport 32.9 1.2E+02 0.0026 25.6 5.7 54 30-95 155-208 (280)
452 cd03224 ABC_TM1139_LivF_branch 32.7 1E+02 0.0022 24.9 5.0 52 32-95 144-195 (222)
453 TIGR01069 mutS2 MutS2 family p 32.5 1.9E+02 0.004 28.9 7.5 89 25-126 391-492 (771)
454 TIGR01288 nodI ATP-binding ABC 32.5 1E+02 0.0022 26.5 5.3 54 31-96 146-199 (303)
455 PRK13641 cbiO cobalt transport 32.4 97 0.0021 26.4 5.1 54 30-95 155-208 (287)
456 PF09336 Vps4_C: Vps4 C termin 32.3 60 0.0013 21.1 2.9 18 169-186 28-45 (62)
457 cd03279 ABC_sbcCD SbcCD and ot 32.3 2E+02 0.0043 23.2 6.7 46 38-95 151-196 (213)
458 cd03255 ABC_MJ0796_Lo1CDE_FtsE 32.3 67 0.0014 25.9 3.9 54 31-95 151-204 (218)
459 PRK11300 livG leucine/isoleuci 32.2 88 0.0019 25.9 4.7 55 31-96 164-218 (255)
460 COG4619 ABC-type uncharacteriz 32.1 1.6E+02 0.0035 24.0 5.7 73 23-113 137-209 (223)
461 TIGR03864 PQQ_ABC_ATP ABC tran 32.1 1.1E+02 0.0024 25.0 5.2 56 30-96 142-197 (236)
462 PRK09519 recA DNA recombinatio 32.1 63 0.0014 32.2 4.2 62 27-88 127-193 (790)
463 COG1134 TagH ABC-type polysacc 32.0 1.1E+02 0.0024 25.9 5.1 29 23-51 150-178 (249)
464 PF11035 SnAPC_2_like: Small n 31.9 1.7E+02 0.0037 25.8 6.3 47 115-161 25-71 (344)
465 PF00270 DEAD: DEAD/DEAH box h 31.9 55 0.0012 24.7 3.2 30 39-76 120-149 (169)
466 PRK08487 DNA polymerase III su 31.8 3.5E+02 0.0075 23.6 11.1 69 106-180 127-197 (328)
467 PRK13536 nodulation factor exp 31.7 1.1E+02 0.0023 27.1 5.3 55 31-97 183-237 (340)
468 CHL00131 ycf16 sulfate ABC tra 31.7 1.2E+02 0.0025 25.1 5.3 54 30-95 161-214 (252)
469 COG4175 ProV ABC-type proline/ 31.7 1.5E+02 0.0032 26.6 5.9 87 15-115 157-250 (386)
470 PRK13634 cbiO cobalt transport 31.7 61 0.0013 27.7 3.7 56 30-96 155-210 (290)
471 cd01080 NAD_bind_m-THF_DH_Cycl 31.6 1.2E+02 0.0025 24.0 5.0 51 84-143 90-140 (168)
472 PRK10253 iron-enterobactin tra 31.5 69 0.0015 26.9 4.0 56 30-96 153-208 (265)
473 PRK11701 phnK phosphonate C-P 31.4 71 0.0015 26.6 4.0 55 31-96 162-216 (258)
474 TIGR03608 L_ocin_972_ABC putat 31.4 2E+02 0.0044 22.7 6.6 51 31-93 145-195 (206)
475 cd03260 ABC_PstB_phosphate_tra 31.3 1.2E+02 0.0026 24.6 5.3 52 31-95 152-203 (227)
476 PF02463 SMC_N: RecF/RecN/SMC 31.1 91 0.002 25.1 4.5 18 35-52 155-172 (220)
477 cd03256 ABC_PhnC_transporter A 30.9 65 0.0014 26.4 3.7 54 32-96 156-209 (241)
478 cd03230 ABC_DR_subfamily_A Thi 30.8 1.2E+02 0.0025 23.6 4.9 54 30-95 105-158 (173)
479 cd03259 ABC_Carb_Solutes_like 30.8 67 0.0014 25.8 3.6 54 31-95 141-194 (213)
480 PRK13639 cbiO cobalt transport 30.7 1.1E+02 0.0025 25.8 5.2 54 31-96 148-201 (275)
481 cd03301 ABC_MalK_N The N-termi 30.5 64 0.0014 25.9 3.5 54 31-95 141-194 (213)
482 cd01123 Rad51_DMC1_radA Rad51_ 30.3 62 0.0013 26.3 3.4 59 32-90 108-168 (235)
483 TIGR03411 urea_trans_UrtD urea 30.2 1.7E+02 0.0037 23.9 6.1 54 30-96 153-206 (242)
484 cd03250 ABCC_MRP_domain1 Domai 30.2 1.9E+02 0.0041 23.0 6.2 56 30-96 137-192 (204)
485 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 30.2 1.6E+02 0.0036 23.9 5.9 54 31-96 153-206 (224)
486 PF12213 Dpoe2NT: DNA polymera 30.1 75 0.0016 21.5 3.1 64 118-182 5-72 (73)
487 PRK08533 flagellar accessory p 30.1 1.6E+02 0.0035 24.3 5.9 28 24-51 103-130 (230)
488 PRK13645 cbiO cobalt transport 29.9 62 0.0013 27.6 3.4 54 31-95 161-214 (289)
489 PF06144 DNA_pol3_delta: DNA p 29.8 34 0.00073 26.4 1.6 78 40-130 59-140 (172)
490 COG4598 HisP ABC-type histidin 29.8 95 0.0021 25.5 4.1 54 26-90 158-211 (256)
491 TIGR02770 nickel_nikD nickel i 29.5 72 0.0016 26.1 3.7 55 31-96 136-190 (230)
492 TIGR03744 traC_PFL_4706 conjug 29.0 1.8E+02 0.004 29.4 7.0 49 37-96 732-780 (893)
493 cd03252 ABCC_Hemolysin The ABC 28.9 2.1E+02 0.0045 23.3 6.4 53 30-95 148-200 (237)
494 PRK14079 recF recombination pr 28.9 3.8E+02 0.0083 23.7 8.4 46 37-97 289-334 (349)
495 TIGR01184 ntrCD nitrate transp 28.8 77 0.0017 26.0 3.7 53 31-94 125-177 (230)
496 cd03263 ABC_subfamily_A The AB 28.7 1E+02 0.0022 24.8 4.4 53 31-96 144-196 (220)
497 cd03217 ABC_FeS_Assembly ABC-t 28.7 1.7E+02 0.0037 23.3 5.7 55 29-95 113-167 (200)
498 TIGR00611 recf recF protein. A 28.5 3.3E+02 0.0072 24.3 7.9 15 37-51 301-315 (365)
499 KOG0058|consensus 28.3 1.4E+02 0.0029 29.4 5.6 46 30-87 614-660 (716)
500 PF02269 TFIID-18kDa: Transcri 28.3 16 0.00035 26.0 -0.4 47 137-183 21-67 (93)
No 1
>KOG0734|consensus
Probab=100.00 E-value=1.2e-56 Score=398.38 Aligned_cols=227 Identities=62% Similarity=0.952 Sum_probs=219.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+|+|||+.+||+|-++|+|.+.+++|++|..|++++||||||||||+++++|.....+ +.++.+|+||.+|||+..+.+
T Consensus 361 A~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 361 AGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred cCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCc
Confidence 5899999999999999999999999999999999999999999999999999766544 899999999999999999999
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
|+|||+||+|+.||+||.||||||++|.+|.||...|.+||+.|+++. ...++|+.-+|+-|.||||+||+++||.|+.
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 5679999999999999999999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEec
Q psy10044 162 RAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLS 232 (235)
Q Consensus 162 ~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
+|+.++...+++++++.|.+++.+|+++++..++++-+.++||||+|||+++.+.+.+- |+||.+|.|-
T Consensus 520 kAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~--PlhKaTImPR 588 (752)
T KOG0734|consen 520 KAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAM--PLHKATIMPR 588 (752)
T ss_pred HHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCc--cccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999998 9999999984
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-50 Score=369.88 Aligned_cols=228 Identities=48% Similarity=0.748 Sum_probs=216.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+++||+++|+|+|+.+|+|.+.+++|++|.+|++++||||||||+|+++..|+.. +++.+..+.+|++|.+|||+..+
T Consensus 207 A~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 207 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred cCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 6899999999999999999999999999999999999999999999999999632 44667778999999999999998
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
..|++|++||+|+-+||||+||||||++|.++.||...|.+|++.|..+. ...++|+..+|+.|+||||+|+.+++++|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEA 366 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998776 56899999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEec
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLS 232 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
+..|++++...+++.+|++|++++..|+++++....++.+.++||||+|||+++++++..+ +.|+++|+|-
T Consensus 367 al~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d--~v~KvtIiPr 437 (596)
T COG0465 367 ALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDAD--PVHKVTIIPR 437 (596)
T ss_pred HHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCc--ccceeeeccC
Confidence 9999999999999999999999999999998887777778899999999999999999999 9999999995
No 3
>KOG0731|consensus
Probab=100.00 E-value=3.5e-49 Score=367.36 Aligned_cols=227 Identities=46% Similarity=0.686 Sum_probs=215.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccC---CCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT---NSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~---~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+|+||+.+++|+|+++++|....+++++|..|+.++|||+||||||+++..|+ ..+.+.+....+|++|.+|||+..
T Consensus 368 AgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 368 AGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred cCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 68999999999999999999999999999999999999999999999999995 334566778899999999999999
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
+..|+|+|+||+++.||+||+||||||++|.++.|+..+|.+|++.|+++.. .+++|+.++|.+|+||||+||.++|+
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999998873 47889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEe
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNL 231 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~ 231 (235)
+|+..|++++...|+..+|+.|+++++.|.+.+++....+++..+||||+|||+++|++.+.+ |+.+++|+|
T Consensus 528 eaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~d--pl~kvsIiP 599 (774)
T KOG0731|consen 528 EAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHAD--PLLKVSIIP 599 (774)
T ss_pred HHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccC--cceeEEecc
Confidence 999999999999999999999999999999888888888889999999999999999999999 999999999
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=327.51 Aligned_cols=184 Identities=41% Similarity=0.638 Sum_probs=176.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
|++.|+.|.||+|+.+|.|++.+.+|++|+.|+.++||||||||||+++.+|.+. +++.+..+++-+||++|||+...
T Consensus 209 T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 209 TDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred cCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 6889999999999999999999999999999999999999999999999999754 34567789999999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|-||+|||+++.|||||+||||||+.|+||+||.++|.+||+.|.+++ ...++||+.||+.|+|+|||||+++|.+|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
.+.|+++.+..+|++||.+|.+++...
T Consensus 369 Gm~AiR~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 369 GMFAIRERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred hHHHHHhccCeecHHHHHHHHHHHHhc
Confidence 999999999999999999999999764
No 5
>KOG0730|consensus
Probab=100.00 E-value=2e-44 Score=327.64 Aligned_cols=183 Identities=36% Similarity=0.599 Sum_probs=173.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
++++|+.|+|+++.+||+|++|+.|+++|++|++.+||||||||||+++..|++.. +....++++++|++|||+....+
T Consensus 492 ~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 492 AGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred hcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccccCc
Confidence 68999999999999999999999999999999999999999999999999998443 47789999999999999999999
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
|+|||+||+|+.||+||+||||||+.|++|+|+.+.|.+||+.+++++ ...++|+.+||+.|+||||+||.++|++|..
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 5678999999999999999999999999999
Q ss_pred HHHHcC--CCCCcHHHHHHHHHHhhCC
Q psy10044 162 RAAIDG--VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 162 ~a~~~~--~~~i~~~~~~~al~~~~~~ 186 (235)
.|.+++ ...|+.++|++|++...++
T Consensus 651 ~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 651 LALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHhcccccccHHHHHHHHHhhccc
Confidence 999985 4579999999999998554
No 6
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3e-43 Score=331.96 Aligned_cols=228 Identities=46% Similarity=0.730 Sum_probs=211.3
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.++||+.++++++.+++.|.++.+++.+|+.|+..+||||||||+|+++.+|+.. +.+....++++++|.+||++..+
T Consensus 209 ~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 209 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred cCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 4789999999999999999999999999999999999999999999999888642 33445678999999999999888
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+++||+|||+|+.||+|++||||||++|++++|+.++|.+||+.++.+. ...++++..+|+.|.||||+||.++|++|
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEA 368 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887 46788999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEec
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLS 232 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
+..|++++...|+..||+.|++++.++.+++......+.++.++|||+|||+++++++... ++++++|+|.
T Consensus 369 a~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~--~~~~v~i~pr 439 (644)
T PRK10733 369 ALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHD--PVHKVTIIPR 439 (644)
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCC--ceeEEEEecc
Confidence 9999999999999999999999999988776666667778889999999999999999998 9999999986
No 7
>KOG0733|consensus
Probab=100.00 E-value=1.5e-43 Score=319.02 Aligned_cols=184 Identities=38% Similarity=0.592 Sum_probs=169.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+|++|+.|.|++|++||+||+|+.+|.+|..||..+||||||||+|+|+++|+... +....+++|+||++|||++...+
T Consensus 569 ag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 569 AGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred ccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccc
Confidence 68999999999999999999999999999999999999999999999999998765 56678999999999999999999
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhc--Cc-cCCCCCHHHHHhcCC--CCCHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG--KI-VSKNIDVDTLARGTT--GFTGADLENMVN 157 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~--~~-~~~~~~l~~la~~t~--G~s~~di~~l~~ 157 (235)
|+||||||+||-||||++||||||+.+++++|+.++|.+||+.+.+ +. ...++|++.+|+.+. |||||||..+|+
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999997 33 678999999999876 999999999999
Q ss_pred HHHHHHHHcC-------C------C---CCcHHHHHHHHHHhhCCc
Q psy10044 158 QAALRAAIDG-------V------P---HVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 158 ~A~~~a~~~~-------~------~---~i~~~~~~~al~~~~~~~ 187 (235)
+|.+.|.++. . . .++..+|++|++++.++.
T Consensus 728 eAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 728 EASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 9999988751 0 1 367889999999997764
No 8
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.5e-42 Score=319.43 Aligned_cols=228 Identities=47% Similarity=0.732 Sum_probs=209.2
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+++||+.++++++.++|.|+++++++.+|+.|+..+||||||||+|+++.+++.. ..+....+++++||.+||++..+
T Consensus 112 ~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 112 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred cCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 4789999999999999999999999999999999999999999999999887642 22345668999999999999888
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+++||+|||+|+.|||+++||||||+.|++++|+.++|.+||+.++.+. ...++++..+|+.|.|||++||+++|++|
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999876 44678999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEec
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLS 232 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
+..|.+++...|+.+||+.|++++..+.+......+.+.++.+|+||+|||+++++++... ++++++|.|.
T Consensus 272 ~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~--~v~~vsi~pr 342 (495)
T TIGR01241 272 ALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDAD--PVHKVTIIPR 342 (495)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCC--ceEEEEEeec
Confidence 9999999999999999999999999987766666677778889999999999999998888 8999999885
No 9
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=8.7e-43 Score=326.52 Aligned_cols=227 Identities=45% Similarity=0.685 Sum_probs=207.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.++||+.+++++|.+++.|.+.+.++.+|+.|+..+||||||||+|+++.+|+.. +.+.....++++||.+||++..+
T Consensus 240 ~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 240 AEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred hCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 4789999999999999999999999999999999999999999999999887532 23445678899999999999888
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|+||+|||+++.+|+|++||||||++|++++|+.++|.+||+.++... ...+.++..+|+.|.|||++||+++|++|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999775 45678899999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEec
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLS 232 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
+..|.+++...++.+||+.|++++..|.++.. ....+.++++||||+||||++++++..+ ++++++|+|.
T Consensus 400 al~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~--~v~kvtI~pr 469 (638)
T CHL00176 400 AILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHD--PVQKVTLIPR 469 (638)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCC--ceEEEEEeec
Confidence 99999999999999999999999999876554 4456667889999999999999999998 9999999996
No 10
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.3e-42 Score=343.05 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=184.0
Q ss_pred CCCeeEEeccchhhhhh-----------------------------------------ccHHH--HHHHHHHHHHhhCCC
Q psy10044 3 THPDTNHAQGPEFDEVL-----------------------------------------VGQGA--RRVRDLFKAAKDRTP 39 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~-----------------------------------------~g~~~--~~i~~~F~~A~~~~P 39 (235)
+++||+.|++++|++++ +++++ .+|+.+|+.|++++|
T Consensus 1654 s~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SP 1733 (2281)
T CHL00206 1654 SYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSP 1733 (2281)
T ss_pred cCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCC
Confidence 68999999999999754 23333 449999999999999
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC---CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH---QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~---~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
|||||||||+++.+.+ ....+++|+++||+.. ...+|+||||||+|+.|||||+||||||++|+++.|+.
T Consensus 1734 CIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~ 1806 (2281)
T CHL00206 1734 CIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLI 1806 (2281)
T ss_pred eEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCc
Confidence 9999999999987521 1234889999999863 45689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh--cCc-cC-CCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCC
Q psy10044 117 TGRREILDLYL--GKI-VS-KNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSR 192 (235)
Q Consensus 117 ~~R~~il~~~l--~~~-~~-~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~ 192 (235)
.+|++++..++ .+. .. ..++++.+|+.|.|||||||+++|++|+..|+++++..|+.++++.|++++++|.+.+..
T Consensus 1807 p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~ 1886 (2281)
T CHL00206 1807 PQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR 1886 (2281)
T ss_pred hhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc
Confidence 99999988654 333 22 346899999999999999999999999999999999999999999999999999754332
Q ss_pred CCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEE
Q psy10044 193 LPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLN 230 (235)
Q Consensus 193 ~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~ 230 (235)
..+.+ .+++||+||||+++++..++ |++|+||.
T Consensus 1887 --~~~~~-~ia~yEiGhAvvq~~L~~~~--pv~kISIy 1919 (2281)
T CHL00206 1887 --SVQDH-GILFYQIGRAVAQNVLLSNC--PIDPISIY 1919 (2281)
T ss_pred --Ccchh-hhhhhHHhHHHHHHhccCCC--CcceEEEe
Confidence 22222 35999999999999999999 99999994
No 11
>KOG0733|consensus
Probab=100.00 E-value=6.4e-41 Score=302.03 Aligned_cols=210 Identities=33% Similarity=0.487 Sum_probs=189.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC--
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN-- 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-- 80 (235)
.|+||+.|+++++++.+.|++|++|+++|++|+.++|||+||||||++.++|... +..-.++++.+||+.||++...
T Consensus 247 l~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-qreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 247 LGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-QREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred cCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-HHHHHHHHHHHHHHhhhccccccc
Confidence 5899999999999999999999999999999999999999999999999999764 3556789999999999999544
Q ss_pred --CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 81 --EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 81 --~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
.+|+||||||+||.|||||+|+||||+.|.++.|+..+|.+||+..++++ +..++|+.+||+.|+||.||||.++|.
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 67999999999999999999999999999999999999999999999987 678999999999999999999999999
Q ss_pred HHHHHHHHc----------------CC----------------------------------------------CCCcHHH
Q psy10044 158 QAALRAAID----------------GV----------------------------------------------PHVTMKY 175 (235)
Q Consensus 158 ~A~~~a~~~----------------~~----------------------------------------------~~i~~~~ 175 (235)
+|+..|+++ +. -.|+.+|
T Consensus 406 ~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eD 485 (802)
T KOG0733|consen 406 EAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFED 485 (802)
T ss_pred HHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHH
Confidence 999888754 00 0377899
Q ss_pred HHHHHHHhhCCcc--cCCCCCchhhhHHHHHHHHHHHHHH
Q psy10044 176 LEYARDKVLMGPE--RKSRLPDEETNMITAYHEGGHAVVA 213 (235)
Q Consensus 176 ~~~al~~~~~~~~--~~~~~~~~e~~~~~a~~e~gha~~~ 213 (235)
|+.|+..++++.. .....++..|.+++|+.+.-..+--
T Consensus 486 F~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~ 525 (802)
T KOG0733|consen 486 FEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNM 525 (802)
T ss_pred HHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHH
Confidence 9999999999884 4467889999999999988665533
No 12
>KOG0738|consensus
Probab=100.00 E-value=5.6e-40 Score=283.25 Aligned_cols=183 Identities=30% Similarity=0.429 Sum_probs=170.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC--
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN-- 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-- 80 (235)
.|..||.|+.+.+.++|-|++|+.||-+|+.|+.++|++|||||||+||.+|++.++|+.++++.++||.+|||+...
T Consensus 269 c~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e 348 (491)
T KOG0738|consen 269 CGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE 348 (491)
T ss_pred hcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999433
Q ss_pred --CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 81 --EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 81 --~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
..|+|+|+||.||+||.||+| ||.+.|++|+|+.++|..+++..+... ..++++++.||+.++||||+||.++|+
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 239999999999999999999 999999999999999999999999887 678999999999999999999999999
Q ss_pred HHHHHHHHcC-----------------CCCCcHHHHHHHHHHhhCCc
Q psy10044 158 QAALRAAIDG-----------------VPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 158 ~A~~~a~~~~-----------------~~~i~~~~~~~al~~~~~~~ 187 (235)
+|+++++++. ..+++.+||+.|+.++.++.
T Consensus 427 eAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 427 EASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred HHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 9999988741 23699999999999997763
No 13
>KOG0736|consensus
Probab=100.00 E-value=1.2e-39 Score=299.83 Aligned_cols=183 Identities=36% Similarity=0.552 Sum_probs=168.0
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCC-ccHHHHHHHHHHHhcCCC--CC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFH--QN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~-~~~~~~~~~ll~~ld~~~--~~ 80 (235)
++.|++|+|++|++||+|++|+|+|++|++||..+||||||||+|++.++|+.++++ ....+++++||.+|||+. ..
T Consensus 730 sL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 730 SLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred eeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 578999999999999999999999999999999999999999999999999977655 478899999999999997 56
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCC-CHHHHHHHHHHHhcCc-cCCCCCHHHHHhcC-CCCCHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPP-DYTGRREILDLYLGKI-VSKNIDVDTLARGT-TGFTGADLENMVN 157 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P-~~~~R~~il~~~l~~~-~~~~~~l~~la~~t-~G~s~~di~~l~~ 157 (235)
.+|+||||||+||.|||||+||||||+.++++++ +.+.+..+|+...++. ++.++|+.++|+++ +.|||||+.++|.
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCS 889 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHH
Confidence 7899999999999999999999999999999998 7888999999999888 68899999999998 4899999999999
Q ss_pred HHHHHHHHcC-----------------CCCCcHHHHHHHHHHhhCC
Q psy10044 158 QAALRAAIDG-----------------VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 158 ~A~~~a~~~~-----------------~~~i~~~~~~~al~~~~~~ 186 (235)
+|...|+++. .-.++++||.+|.+++.++
T Consensus 890 dA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 890 DAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 9999988651 1148999999999999775
No 14
>KOG0728|consensus
Probab=100.00 E-value=3.2e-38 Score=259.62 Aligned_cols=183 Identities=35% Similarity=0.582 Sum_probs=172.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCC--CCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
|-+.|+.||||+|+.+|.|++.+.+|++|-.|+.++|+|||+||||+++..|.. .++++...+..-++|+++||+...
T Consensus 205 t~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 205 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred cceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 568899999999999999999999999999999999999999999999999853 344667788899999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.++-||.+||+.+-|||||+||||+|+.|+||+|+.+.|.+||+.+-+++ +...+|+..+|+++.|.||++++.+|.+|
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999998887 67889999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
.+.|.++.+-.+|++||+-|..++..
T Consensus 365 gm~alrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 365 GMYALRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred hHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999999999999999999998865
No 15
>KOG0727|consensus
Probab=100.00 E-value=1.5e-36 Score=250.00 Aligned_cols=183 Identities=35% Similarity=0.557 Sum_probs=171.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+.+.|+.|.||+|+.+|.|++.+.+|++|..|+.++|+||||||+|++..+|-+. +.+.+..+++-++|++|||+...
T Consensus 213 t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 213 TTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred cchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 4678999999999999999999999999999999999999999999999998533 23456788999999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|-||.+||+.+.|||||+||||+|+.|+||+|+..+++-+|....+++ +.+++|++.+..+-+..|++||.++|++|
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqea 372 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEA 372 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
.+.|+++++..+.+.||++|.....-
T Consensus 373 gm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 373 GMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred hHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 99999999999999999999887743
No 16
>KOG0739|consensus
Probab=100.00 E-value=6.2e-37 Score=257.04 Aligned_cols=161 Identities=30% Similarity=0.539 Sum_probs=149.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-CCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-HQNE 81 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-~~~~ 81 (235)
++..|++||.|+|+++|+|++|+.++++|+.||.++|+||||||||++|+.|+.+. +...+++..+||.+|.|+ +.+.
T Consensus 190 AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 190 ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHhhhccccCCC
Confidence 46789999999999999999999999999999999999999999999999987654 566899999999999999 5567
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
+|+|+|+||-||.||.|++| ||++.|++|+|+...|..+|+.++... ...+.|+..|+++|+||||+||.-+|++|
T Consensus 269 gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDa 346 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDA 346 (439)
T ss_pred ceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhh
Confidence 89999999999999999999 999999999999999999999999876 45677999999999999999999999999
Q ss_pred HHHHHHc
Q psy10044 160 ALRAAID 166 (235)
Q Consensus 160 ~~~a~~~ 166 (235)
++..++.
T Consensus 347 lmePvRk 353 (439)
T KOG0739|consen 347 LMEPVRK 353 (439)
T ss_pred hhhhHHH
Confidence 8877654
No 17
>KOG0726|consensus
Probab=100.00 E-value=4.8e-37 Score=257.07 Aligned_cols=184 Identities=33% Similarity=0.568 Sum_probs=172.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCC--CCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+.+.|+.|-||+|..+|.|++.+.+|++|+.|..++|||+||||||+++.+|-+ +++.....+..-+||+++||+...
T Consensus 243 TSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred cchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc
Confidence 467899999999999999999999999999999999999999999999999853 334456667778999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
..|-||.|||+.+.|||||+||||+|+.|+|+.||...++.||+.+.+++ +..+++++.+...-+.+||+||+++|.+|
T Consensus 323 gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEa 402 (440)
T KOG0726|consen 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEA 402 (440)
T ss_pred CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 77899999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
.+.|.++.+..++++||..|.+++.+.
T Consensus 403 GllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 403 GLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999775
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=271.65 Aligned_cols=183 Identities=38% Similarity=0.601 Sum_probs=170.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
++.+|+.+++++++++|+|+++++|+++|..|++.+||||||||+|+++..|+.... ....++++++|.+|+++....+
T Consensus 300 ~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 300 SRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred CCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCccCc
Confidence 589999999999999999999999999999999999999999999999999976542 2337899999999999999999
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc---cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI---VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~---~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
|+||+|||+|+.+|+|++||||||+.+++++|+.++|.+||+.++.+. ...++++..+++.|+||||+||..+|++|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999864 24689999999999999999999999999
Q ss_pred HHHHHHcC-CCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDG-VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~-~~~i~~~~~~~al~~~~~~ 186 (235)
.+.+.++. ...++++||..|+++..++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 459 ALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 99999988 7789999999999997665
No 19
>KOG0735|consensus
Probab=100.00 E-value=1.5e-35 Score=270.89 Aligned_cols=163 Identities=39% Similarity=0.653 Sum_probs=153.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+++.|+.|+|++|+++|.|.+|.++|++|++|+..+|||+||||+|++.++|+.+. .....+++|+||++|||...-.+
T Consensus 725 ~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 725 SNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred CCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhccccccce
Confidence 57899999999999999999999999999999999999999999999999997543 45678999999999999999899
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
|+|+|+|.+|+.|||||+||||+|+.++.+.|++.+|.+|++.+-+.. ...++|++.+|.+|+|||||||..++-.|-+
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998866 6789999999999999999999999999987
Q ss_pred HHHHc
Q psy10044 162 RAAID 166 (235)
Q Consensus 162 ~a~~~ 166 (235)
.|+.+
T Consensus 884 ~avh~ 888 (952)
T KOG0735|consen 884 AAVHE 888 (952)
T ss_pred HHHHH
Confidence 77643
No 20
>KOG0652|consensus
Probab=100.00 E-value=1e-35 Score=246.08 Aligned_cols=183 Identities=36% Similarity=0.564 Sum_probs=172.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
++..|+.+-++.|+.||.|++.+.+|..|..|+..+|+||||||+|+++.+|.++. +.....+..-++|+++||+.++
T Consensus 229 T~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 229 TNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred ccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 57889999999999999999999999999999999999999999999999997543 3456778889999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
..|-|||+||+.+-|||||+|.||+|+.|+||.|+.+.|.+|++.+-+++ ..+++++++||+.|++|.|++.+++|-+|
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhh
Confidence 99999999999999999999999999999999999999999999999888 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
.+.|.+++...++.+||.+++..+..
T Consensus 389 GMiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 389 GMIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred hHHHHhcccccccHHHHHHHHHHHHH
Confidence 99999999999999999999888754
No 21
>KOG0729|consensus
Probab=100.00 E-value=1.3e-35 Score=246.16 Aligned_cols=189 Identities=35% Similarity=0.513 Sum_probs=175.9
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+++.|+.|-||+|+.+|+|++.+.+|++|+.|+..+.|||||||+|++++.|-+. +++.+..+..-++++++||+...
T Consensus 235 tdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr 314 (435)
T KOG0729|consen 235 TDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 314 (435)
T ss_pred cCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC
Confidence 5788999999999999999999999999999999999999999999999998644 45667788889999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.++-|+.+||+|+.|||||+||||+|+.++|++|+.+.|..||+.|.+.+ ...++-++-+|+.++.-||++|+.+|.+|
T Consensus 315 gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvctea 394 (435)
T KOG0729|consen 315 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEA 394 (435)
T ss_pred CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998877 56788899999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCcccCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPERKS 191 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~ 191 (235)
.+.|++..+...|.+||..|+.+++.|..+.+
T Consensus 395 gmfairarrk~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 395 GMFAIRARRKVATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988765443
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=241.80 Aligned_cols=180 Identities=34% Similarity=0.533 Sum_probs=168.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+++||+.|++.+|...++|++.++|+++|+.|++.+|||+||||+|+++-+|..+.-......++|.||++|||++.+.+
T Consensus 175 ~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 175 AKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred cCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 57899999999999999999999999999999999999999999999999998766566788899999999999999999
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHH-HHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLEN-MVNQAA 160 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~-l~~~A~ 160 (235)
|+.||+||+|+.||||+++ ||...|+|.+|+.++|.+|++.|..++ ..-+.++..++.+|.||||+||.. ++..|+
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aL 332 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTAL 332 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999988 556788999999999999999964 566788
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 161 LRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
+.|+.+++..++.+|++.|+++..
T Consensus 333 h~Ai~ed~e~v~~edie~al~k~r 356 (368)
T COG1223 333 HRAIAEDREKVEREDIEKALKKER 356 (368)
T ss_pred HHHHHhchhhhhHHHHHHHHHhhc
Confidence 999999999999999999999853
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.7e-34 Score=263.51 Aligned_cols=182 Identities=22% Similarity=0.304 Sum_probs=166.2
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.|+||+.++++.+.++|+|+++++++++|+.|+..+||||||||+|.++.++...+++...++++++|+..|+. .+.+
T Consensus 283 ~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~ 360 (489)
T CHL00195 283 WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSP 360 (489)
T ss_pred hCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCc
Confidence 47899999999999999999999999999999999999999999999998765555566788999999999985 4568
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc---CCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV---SKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~---~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
|+||||||+++.|||+++||||||+.+++++|+.++|.+||+.++.+.. ..+.++..+|+.|+||||+||+++|.+|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998762 3578999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
+..|..+++ .++.+||..|+.++.|..
T Consensus 441 ~~~A~~~~~-~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 441 MYIAFYEKR-EFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHcCC-CcCHHHHHHHHHhcCCCc
Confidence 999988774 589999999999998853
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=257.83 Aligned_cols=184 Identities=33% Similarity=0.539 Sum_probs=170.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+.+|+.+.++++.++|.|++++.++++|..|+..+||||||||+|+++.+|.+.. .+....+++.+|+.+++++...
T Consensus 203 l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 203 TTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred cCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 46889999999999999999999999999999999999999999999998875332 2335667899999999999888
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+++||+|||+++.||||++||||||+.|++++|+.++|..||+.++.+. ...++++..++..|+||||+||+++|++|
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEA 362 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999877 56789999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
.+.|.++++..|+.+||++|++++...
T Consensus 363 ~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 363 GMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999999999998665
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-34 Score=276.53 Aligned_cols=184 Identities=37% Similarity=0.607 Sum_probs=169.4
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
++.+|+.++++++.++|+|+++++++.+|+.|+..+||||||||+|+++..|+....+....+++++||.+||++....+
T Consensus 511 ~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 511 SGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred cCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 57899999999999999999999999999999999999999999999999887655555678899999999999988889
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
++||+|||+|+.||||++||||||+.|++++|+.++|.+||+.++.+. ...++|+..+|+.|+||||+||+++|++|..
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~ 670 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAM 670 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877 4678999999999999999999999999999
Q ss_pred HHHHcC------------------CCCCcHHHHHHHHHHhhCC
Q psy10044 162 RAAIDG------------------VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 162 ~a~~~~------------------~~~i~~~~~~~al~~~~~~ 186 (235)
.|+++. ...++.+||+.|++++.++
T Consensus 671 ~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 671 AALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred HHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 888741 1269999999999998665
No 26
>KOG0737|consensus
Probab=100.00 E-value=9.6e-35 Score=250.00 Aligned_cols=161 Identities=33% Similarity=0.524 Sum_probs=151.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+|++|+.|+.+.+.++|+|++++.++.+|..|.+.+||||||||+|++++.| ..++++....+.++|+..+||+..+.+
T Consensus 151 aga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~ 229 (386)
T KOG0737|consen 151 AGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDS 229 (386)
T ss_pred cCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCC
Confidence 5899999999999999999999999999999999999999999999999999 667788888999999999999966554
Q ss_pred --eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 83 --VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 83 --v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
|+|+||||+|.+||.|++| |+.+.++++.|+..+|..||+.+|++- ..+++|+.++|++|+||||+||+++|+.|
T Consensus 230 ~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 230 ERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred ceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999886 56899999999999999999999999999
Q ss_pred HHHHHHc
Q psy10044 160 ALRAAID 166 (235)
Q Consensus 160 ~~~a~~~ 166 (235)
+...+++
T Consensus 308 a~~~ire 314 (386)
T KOG0737|consen 308 ALRPIRE 314 (386)
T ss_pred hHhHHHH
Confidence 8877653
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.6e-33 Score=249.92 Aligned_cols=186 Identities=42% Similarity=0.636 Sum_probs=170.4
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCC--CccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~~ 80 (235)
++.+|+.++++++.++|.|++++.++.+|+.|+..+||||||||+|+++.++++... +....+.+.+++.+++++...
T Consensus 189 ~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 189 TNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred hCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 467899999999999999999999999999999999999999999999988764432 234567788999999999888
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.++.||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++.+. ...++++..+|..|+||||+||+++|++|
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA 348 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEA 348 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887 45678999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCcc
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPE 188 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~ 188 (235)
.+.|++++...|+.+||.+|+.++.++..
T Consensus 349 ~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 349 GMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999987643
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.5e-33 Score=249.06 Aligned_cols=184 Identities=33% Similarity=0.565 Sum_probs=168.9
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
++.+|+.+.+++|.++|.|++++.++.+|..|+..+||||||||+|+++.+|... +......+.+.++|.+++++...
T Consensus 241 l~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 241 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 3578999999999999999999999999999999999999999999999887532 22334567788999999999878
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.++.||+|||+++.||++++||||||+.|+|++|+.++|.+||+.++.+. ...++++..++..|+||||+||+++|++|
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA 400 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEA 400 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887 56789999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
.+.|.++++..|+.+||..|++++...
T Consensus 401 ~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 401 GLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 999999999999999999999998654
No 29
>KOG0730|consensus
Probab=100.00 E-value=4.1e-33 Score=254.05 Aligned_cols=210 Identities=30% Similarity=0.431 Sum_probs=187.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC-CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~-P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+++.++.++++++++++.|++++++|.+|+.|.+.+ |+||||||+|+++++|..... ...+++.++++.||++....
T Consensus 242 ~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~ 319 (693)
T KOG0730|consen 242 YGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDA 319 (693)
T ss_pred hCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcC
Confidence 468899999999999999999999999999999999 999999999999999876543 57899999999999999889
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc-CCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV-SKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~-~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
+++||++||+|+.|||+++| ||||+.++++.|+..+|.+|++.+..++. .+++++..+|..|.||+|+||.++|.+|.
T Consensus 320 ~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~ 398 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREAS 398 (693)
T ss_pred cEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999998884 45799999999999999999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhhCCcccC--CCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCcc
Q psy10044 161 LRAAIDGVPHVTMKYLEYARDKVLMGPERK--SRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTH 225 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al~~~~~~~~~~--~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~ 225 (235)
..+.++ ++++|..|+..+.++..+. ...+...|.+++++.+.... +.++.+||++
T Consensus 399 ~~~~r~-----~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e-----lq~~V~~p~~ 455 (693)
T KOG0730|consen 399 LQATRR-----TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE-----LQQAVEWPLK 455 (693)
T ss_pred HHHhhh-----hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH-----HHHHHhhhhh
Confidence 999987 8999999999999887443 45677888888777776444 4444455554
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=7.7e-30 Score=226.91 Aligned_cols=181 Identities=43% Similarity=0.649 Sum_probs=164.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+.+|+.+.++++...|.|+++..++.+|+.|+...|+||||||+|.++.++.+.. ......+.+..++.+++++...
T Consensus 180 l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 180 TNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred CCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 36789999999999999999999999999999999999999999999998775432 2334567788999999998777
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.++.||+|||+++.+|++++||||||+.|+++.|+.++|.+||+.++.+. ...++++..+++.|+||||+||.++|++|
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A 339 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEA 339 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998776 34568999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.+.|+++++..|+.+||..|+.++
T Consensus 340 ~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 340 GMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHhCCCccCHHHHHHHHHHh
Confidence 999999999999999999999875
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=7.1e-30 Score=222.02 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=154.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhh-----CCCeEEEEccccccccccCCCCCCccHHHHH-HHHHHHhcC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD-----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDG 76 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~-----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~-~~ll~~ld~ 76 (235)
.|++|+.+++++|.++|+|++|++||++|..|+. .+||||||||||++++++++. +....++++ .+|++.||+
T Consensus 172 lg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~-~~tv~~qiV~~tLLnl~D~ 250 (413)
T PLN00020 172 MGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT-QYTVNNQMVNGTLMNIADN 250 (413)
T ss_pred cCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC-CcchHHHHHHHHHHHHhcC
Confidence 4889999999999999999999999999999975 469999999999999998643 344445565 799999886
Q ss_pred C------------CCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcC
Q psy10044 77 F------------HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGT 144 (235)
Q Consensus 77 ~------------~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t 144 (235)
. ....+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++......|+..|++.+
T Consensus 251 p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f 328 (413)
T PLN00020 251 PTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLVDTF 328 (413)
T ss_pred CccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcC
Confidence 3 23567999999999999999999999999965 589999999999999988755678899999999
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHH
Q psy10044 145 TG----FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVA 213 (235)
Q Consensus 145 ~G----~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~ 213 (235)
+| |+|+--..+..++....+.+- ..+.+-. +..-+.+....+.. ....+-.+-|.|+.++.
T Consensus 329 ~gq~~Df~GAlrar~yd~~v~~~i~~~----g~~~~~~---~l~~~~~~~p~f~~-~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 329 PGQPLDFFGALRARVYDDEVRKWIAEV----GVENLGK---KLVNSKKGPPTFEP-PKMTLEKLLEYGNMLVR 393 (413)
T ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHh----hHHHHHH---HHhcCCCCCCCCCC-CCCCHHHHHHHHHHHHH
Confidence 87 688888888888877665432 1222222 22222121222222 22345577889998865
No 32
>KOG0741|consensus
Probab=99.97 E-value=3.6e-31 Score=236.00 Aligned_cols=181 Identities=34% Similarity=0.513 Sum_probs=160.6
Q ss_pred eEEeccchhhhhhccHHHHHHHHHHHHHhh----CC----CeEEEEccccccccccCCCCC-CccHHHHHHHHHHHhcCC
Q psy10044 7 TNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RT----PCVVFIDEIDSVGAKRTNSVL-HPYANQTINQLLAEMDGF 77 (235)
Q Consensus 7 ~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~----P~Il~iDeiD~l~~~r~~~~~-~~~~~~~~~~ll~~ld~~ 77 (235)
-=.|+|++++++|+|++|.+||++|..|.+ .. =-||+|||||++|.+|++..+ ......++|+||..|||+
T Consensus 285 PKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV 364 (744)
T KOG0741|consen 285 PKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV 364 (744)
T ss_pred CcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH
Confidence 345899999999999999999999999953 11 259999999999999986654 556789999999999999
Q ss_pred CCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-----cCCCCCHHHHHhcCCCCCHHHH
Q psy10044 78 HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-----VSKNIDVDTLARGTTGFTGADL 152 (235)
Q Consensus 78 ~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-----~~~~~~l~~la~~t~G~s~~di 152 (235)
..-++++|||-||+.|.||+||+|||||..++++.+||++.|.+|++.+..++ ...++|+++||..|-.||||+|
T Consensus 365 eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEl 444 (744)
T KOG0741|consen 365 EQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAEL 444 (744)
T ss_pred HhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHH
Confidence 99999999999999999999999999999999999999999999999998765 5689999999999999999999
Q ss_pred HHHHHHHHHHHHHc----C-----------CCCCcHHHHHHHHHHhhCCc
Q psy10044 153 ENMVNQAALRAAID----G-----------VPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 153 ~~l~~~A~~~a~~~----~-----------~~~i~~~~~~~al~~~~~~~ 187 (235)
+.+|+.|...|.-+ + +-.++.+||..|++.+.|..
T Consensus 445 eglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 445 EGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred HHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 99999998777643 1 12489999999999988754
No 33
>KOG0651|consensus
Probab=99.97 E-value=4.9e-31 Score=222.42 Aligned_cols=182 Identities=32% Similarity=0.511 Sum_probs=168.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.|++|+.++.+.|.++|.||+.+.||+.|..|+...|||||+||||++++++.+.. .+....+.+-+++++||++...
T Consensus 190 mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l 269 (388)
T KOG0651|consen 190 MGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL 269 (388)
T ss_pred cCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc
Confidence 37899999999999999999999999999999999999999999999999985432 2345667888999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|-+|+|||+|+.|||||+||||+|+.+++|+|+...|..|++.+-..+ ....++.+.+.+.++||.|+|+.+.|++|
T Consensus 270 ~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEa 349 (388)
T KOG0651|consen 270 HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEA 349 (388)
T ss_pred ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999988777 67889999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
.+.|.++.+..+-.+++..++.++.
T Consensus 350 g~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 350 GMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred cccccchhhHHHhHHHHHHHHHHHH
Confidence 9999999999999999999987773
No 34
>KOG0740|consensus
Probab=99.97 E-value=4e-30 Score=227.90 Aligned_cols=182 Identities=29% Similarity=0.452 Sum_probs=162.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC--CC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH--QN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--~~ 80 (235)
+++.|+.+++++|.++|+|++|+.|+.+|..|+..+|+|+||||+|.++.+|+ +..++...++..+||.++++.. .+
T Consensus 210 ~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs-~~e~e~srr~ktefLiq~~~~~s~~~ 288 (428)
T KOG0740|consen 210 SGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS-DNEHESSRRLKTEFLLQFDGKNSAPD 288 (428)
T ss_pred hcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC-CcccccchhhhhHHHhhhccccCCCC
Confidence 57899999999999999999999999999999999999999999999999994 4456778899999999999884 44
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
++|+||||||+|+.+|.|++| ||.+.+++|+|+.+.|..+|+.++.+. ...+.|+..+++.|+|||++||.++|.+
T Consensus 289 drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 289 DRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 689999999999999999999 999999999999999999999999776 3356789999999999999999999999
Q ss_pred HHHHHHHc-------------CCCCCcHHHHHHHHHHhhCCc
Q psy10044 159 AALRAAID-------------GVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 159 A~~~a~~~-------------~~~~i~~~~~~~al~~~~~~~ 187 (235)
|++--.+. +.+.++..||..|.+.+.++.
T Consensus 367 a~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred hhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 97543332 335688899999999887764
No 35
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=5.6e-29 Score=227.33 Aligned_cols=197 Identities=29% Similarity=0.458 Sum_probs=160.1
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..|+.++++++.++|+|+++++++.+|+.|+.. .||||||||+|+++.+|+...++...++++++||.+||++...
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 458899999999999999999999999999864 6999999999999998875544555678899999999999888
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cC----------CCCCHHHHHh-------
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VS----------KNIDVDTLAR------- 142 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~----------~~~~l~~la~------- 142 (235)
.+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++... .. ...++..+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998753 11 1112222222
Q ss_pred ----------------------cCCCCCHHHHHHHHHHHHHHHHHc----CCCCCcHHHHHHHHHHhhCCcccCCCCC-c
Q psy10044 143 ----------------------GTTGFTGADLENMVNQAALRAAID----GVPHVTMKYLEYARDKVLMGPERKSRLP-D 195 (235)
Q Consensus 143 ----------------------~t~G~s~~di~~l~~~A~~~a~~~----~~~~i~~~~~~~al~~~~~~~~~~~~~~-~ 195 (235)
.++.+||++|+++|.+|...|+++ +...++.+|+..|+.......+.-.... .
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~ 491 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNP 491 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCH
Confidence 256799999999999999888865 4568999999999988765543333322 3
Q ss_pred hhhhHH
Q psy10044 196 EETNMI 201 (235)
Q Consensus 196 ~e~~~~ 201 (235)
++|.++
T Consensus 492 ~~w~~~ 497 (512)
T TIGR03689 492 DDWARI 497 (512)
T ss_pred HHHhhh
Confidence 446555
No 36
>KOG0732|consensus
Probab=99.95 E-value=5.5e-28 Score=231.25 Aligned_cols=185 Identities=35% Similarity=0.497 Sum_probs=163.8
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeE
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 84 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 84 (235)
+.|+.=++++.+++|+|+.+++++.+|+.|+++.|+|||+||||-|.+.|+... ......++++||..|||+...+.|+
T Consensus 330 isffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsRgqVv 408 (1080)
T KOG0732|consen 330 ISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSRGQVV 408 (1080)
T ss_pred cchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCCCceE
Confidence 457788999999999999999999999999999999999999999999986543 3345679999999999999999999
Q ss_pred EEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy10044 85 VLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGTTGFTGADLENMVNQAALR 162 (235)
Q Consensus 85 vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t~G~s~~di~~l~~~A~~~ 162 (235)
||||||+|+.+||||+||||||+.++|++|+.+.|..|+..+..+.. ....-+..+|+.|.||-|+||+++|.+|++.
T Consensus 409 vigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 409 VIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALI 488 (1080)
T ss_pred EEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999987763 2233477899999999999999999999999
Q ss_pred HHHcCCC----------------CCcHHHHHHHHHHhhCCcccC
Q psy10044 163 AAIDGVP----------------HVTMKYLEYARDKVLMGPERK 190 (235)
Q Consensus 163 a~~~~~~----------------~i~~~~~~~al~~~~~~~~~~ 190 (235)
+.++.-+ .+...||-.|+.+..++..+.
T Consensus 489 ~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 489 ALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred hhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 9876322 378889999999998876543
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=4.1e-26 Score=219.20 Aligned_cols=209 Identities=35% Similarity=0.515 Sum_probs=177.4
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.+.+|+.++++++.++|.|+++++++.+|+.|....|+||||||+|.++.++.... .....+++++|+..|+++....+
T Consensus 236 ~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 236 AGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred hCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhccccCCC
Confidence 36789999999999999999999999999999999999999999999998876443 23346789999999999988889
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
++||++||.++.+|++++|||||++.++++.|+.++|.+||+.+.... ...+.+++.+++.|.||+++|+..+|++|.+
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776 4567899999999999999999999999998
Q ss_pred HHHHcC-------------------CCCCcHHHHHHHHHHhhCCcccC--CCCCchhhhHHHHHHHHHHHHH
Q psy10044 162 RAAIDG-------------------VPHVTMKYLEYARDKVLMGPERK--SRLPDEETNMITAYHEGGHAVV 212 (235)
Q Consensus 162 ~a~~~~-------------------~~~i~~~~~~~al~~~~~~~~~~--~~~~~~e~~~~~a~~e~gha~~ 212 (235)
.+.++. ...++.+||..|+..+.++.... ...+...|.++++..++...+-
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~ 466 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELR 466 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHH
Confidence 876541 12478999999999988765322 2344556666766666655543
No 38
>KOG0735|consensus
Probab=99.86 E-value=1.5e-21 Score=179.66 Aligned_cols=221 Identities=17% Similarity=0.237 Sum_probs=176.9
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccC-CCCCCccHHHHHHHHHHHhc-CC-CCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT-NSVLHPYANQTINQLLAEMD-GF-HQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~-~~~~~~~~~~~~~~ll~~ld-~~-~~~ 80 (235)
.+++..++|+.+-..-.....+.++.+|..|.+++|+||++|++|.|++..+ .++........++.|++++- .+ ..+
T Consensus 460 ~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~ 539 (952)
T KOG0735|consen 460 IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRN 539 (952)
T ss_pred ceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccC
Confidence 4678899999999888888899999999999999999999999999999433 22333445566677776543 22 455
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
..+.|||+.+....|+|-|..|++|+.++.++.|+..+|.+||+..+++.. ...-|++-++.+|+||...|+..++.+
T Consensus 540 ~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeR 619 (952)
T KOG0735|consen 540 RKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVER 619 (952)
T ss_pred cEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHH
Confidence 668999999999999999999999999999999999999999999998763 223356669999999999999999999
Q ss_pred HHHHHHHc----CCCCCcHHHHHHHHHHhhCCcccCC---CCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEE
Q psy10044 159 AALRAAID----GVPHVTMKYLEYARDKVLMGPERKS---RLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITL 229 (235)
Q Consensus 159 A~~~a~~~----~~~~i~~~~~~~al~~~~~~~~~~~---~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~ 229 (235)
|...|..+ +.+.+|.++|.++++.+.|..-+.. +-..-.|.++++++|+.. .+++..+||.+|-.|
T Consensus 620 ai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~-----~l~~~i~~P~kyp~i 692 (952)
T KOG0735|consen 620 AIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK-----VLEEVIEWPSKYPQI 692 (952)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH-----HHHHHHhccccchHH
Confidence 99888832 3347899999999999998764433 333356778888888744 455566798887543
No 39
>KOG0736|consensus
Probab=99.84 E-value=2.6e-20 Score=172.67 Aligned_cols=210 Identities=20% Similarity=0.289 Sum_probs=172.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.|+|++.++|.++++...+.+|.++..+|.+|+.++|+|||+-++|.|+.++.++. .-.....++.++..-+...+..+
T Consensus 455 lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge-d~rl~~~i~~~ls~e~~~~~~~~ 533 (953)
T KOG0736|consen 455 LGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE-DARLLKVIRHLLSNEDFKFSCPP 533 (953)
T ss_pred hCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch-hHHHHHHHHHHHhcccccCCCCc
Confidence 58999999999999999999999999999999999999999999999997665522 22233344444442222246678
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
++||++|++.+.+++.+++ -|-++|.++.|+.+||.+||+.|+... ..+++.+..+|.+|.|||.+|+.+++.+...
T Consensus 534 ~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~ 611 (953)
T KOG0736|consen 534 VIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSL 611 (953)
T ss_pred eEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchH
Confidence 9999999999999999999 899999999999999999999999887 5678999999999999999999999987633
Q ss_pred HHHH---cC-----------------CCCCcHHHHHHHHHHhhCCc---ccCCCCCchhhhHHHHHHHHHHHHHHhh
Q psy10044 162 RAAI---DG-----------------VPHVTMKYLEYARDKVLMGP---ERKSRLPDEETNMITAYHEGGHAVVAFF 215 (235)
Q Consensus 162 ~a~~---~~-----------------~~~i~~~~~~~al~~~~~~~---~~~~~~~~~e~~~~~a~~e~gha~~~~~ 215 (235)
.+.. .. ...++++||.+|+.+..... -...+++...|.+++++.|....|...+
T Consensus 612 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTI 688 (953)
T KOG0736|consen 612 AAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTI 688 (953)
T ss_pred HHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHh
Confidence 2221 11 14699999999999776433 2467899999999999999988876543
No 40
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.8e-18 Score=157.56 Aligned_cols=195 Identities=38% Similarity=0.493 Sum_probs=167.7
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEE
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVV 85 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 85 (235)
+++.+++++..++|+|+++.+++.+|+.|+..+|+++++|++|.+.+.+.. ........++.+++..+++++... +++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~~~~-v~~ 121 (494)
T COG0464 44 EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLKRGQ-VIV 121 (494)
T ss_pred cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccc-cccchhhHHHHHHHHhcccccCCc-eEE
Confidence 347889999999999999999999999999999999999999999999887 445667889999999999998444 999
Q ss_pred EEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy10044 86 LGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAA 164 (235)
Q Consensus 86 IatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~ 164 (235)
++.||++..+|+++++||||+..++++.|+...|.++++...... ...+.++..++..+.|++++|+..+|.++...+.
T Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 201 (494)
T COG0464 122 IGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALREL 201 (494)
T ss_pred EeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776 3457899999999999999999999999988888
Q ss_pred HcC------CCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHH
Q psy10044 165 IDG------VPHVTMKYLEYARDKVLMGPERKSRLPDEETNMIT 202 (235)
Q Consensus 165 ~~~------~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~ 202 (235)
++. ...++.+++.++++++.+........+...|.+++
T Consensus 202 ~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~dig 245 (494)
T COG0464 202 RRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIG 245 (494)
T ss_pred HhhhccCcccccccHHHHHHHHHhcCcccccccCCCCcceehhh
Confidence 764 33589999999999997741112233344555543
No 41
>KOG0742|consensus
Probab=99.75 E-value=2.5e-17 Score=144.17 Aligned_cols=172 Identities=26% Similarity=0.365 Sum_probs=135.7
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC-CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~-P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
||+.+-.+.|.+.. ..-.++...|.++|+.|++.. .-+|||||.|+|+..|.....++..+..+|.||-.-.. ...
T Consensus 408 SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd--qSr 484 (630)
T KOG0742|consen 408 SGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSR 484 (630)
T ss_pred cCCceehhcCCCcc-ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc--ccc
Confidence 57777777777754 334478899999999998754 57999999999999998777788888999999977653 456
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc-C----C-------------------CCC-
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV-S----K-------------------NID- 136 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~-~----~-------------------~~~- 136 (235)
+++++.+||+|.++|.|+-. |||..++||+|..++|..++..|+.++. . . ..+
T Consensus 485 divLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t 562 (630)
T KOG0742|consen 485 DIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDT 562 (630)
T ss_pred ceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchH
Confidence 78999999999999999999 9999999999999999999999997651 0 1 001
Q ss_pred ---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 137 ---VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 137 ---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
+.+.|++|+||||++|..++...-..+.....-+++...|++-
T Consensus 563 ~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~ 608 (630)
T KOG0742|consen 563 GRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDER 608 (630)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 5668899999999999999975443334344445566555543
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.74 E-value=2.6e-17 Score=124.83 Aligned_cols=109 Identities=35% Similarity=0.569 Sum_probs=97.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC-CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC-
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN- 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~-P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~- 80 (235)
.+.+|+.++++++.+.+.+++++.++.+|+.|+..+ ||||||||+|.++.+. +.........+++.|+..++.....
T Consensus 22 l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~ 100 (132)
T PF00004_consen 22 LGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSLLDNPSSKN 100 (132)
T ss_dssp TTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHHHHTTTTTS
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccccccccccceeeeccccccccc
Confidence 478999999999999999999999999999999988 9999999999999988 3344566778999999999988655
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCC
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~ 113 (235)
.++++|+|||.++.+|++++| |||+..|++++
T Consensus 101 ~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 101 SRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 679999999999999999998 89999999874
No 43
>KOG0744|consensus
Probab=99.61 E-value=3.3e-15 Score=127.57 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=138.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC-----CeEEEEccccccccccCC---CCCCccHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT-----PCVVFIDEIDSVGAKRTN---SVLHPYANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~-----P~Il~iDeiD~l~~~r~~---~~~~~~~~~~~~~ll~~l 74 (235)
++..++.+++..+.++|++|+.+.+..+|++..... =..++|||+++++..|.+ .+..+..-+++|.+|++|
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744|consen 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred ccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Confidence 355789999999999999999999999999886422 246789999999998842 234456789999999999
Q ss_pred cCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc------CC-------------CC
Q psy10044 75 DGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV------SK-------------NI 135 (235)
Q Consensus 75 d~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~------~~-------------~~ 135 (235)
|.+++..+|++.+|+|-.+.||.|+.. |-|-+.++++|+...|.+|++.++..+. .. +.
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~ 367 (423)
T KOG0744|consen 290 DRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKA 367 (423)
T ss_pred HHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHh
Confidence 999999999999999999999999999 9999999999999999999999885531 00 01
Q ss_pred CHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 136 DVDTLARG-TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 136 ~l~~la~~-t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
....+... +.|.||+-|+.+=-.|...-. ....++..+|..|+
T Consensus 368 ~~~~~~~~~~~gLSGRtlrkLP~Laha~y~--~~~~v~~~~fl~al 411 (423)
T KOG0744|consen 368 LRNILIELSTVGLSGRTLRKLPLLAHAEYF--RTFTVDLSNFLLAL 411 (423)
T ss_pred HHHHHHHHhhcCCccchHhhhhHHHHHhcc--CCCccChHHHHHHH
Confidence 12223333 589999999988765543322 23578888888775
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.51 E-value=7.2e-13 Score=114.35 Aligned_cols=151 Identities=19% Similarity=0.234 Sum_probs=113.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.+.+++.++++++.+.|+|+++.+++.+|+.|. +.||||||+|.++..++. .......+..|+..|+.. ..+
T Consensus 90 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~--~~~ 161 (287)
T CHL00181 90 KKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ--RDD 161 (287)
T ss_pred CCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC--CCC
Confidence 345799999999999999999999999998874 489999999999764321 233466788888888853 356
Q ss_pred eEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHh----c--CCCCC-
Q psy10044 83 VVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLAR----G--TTGFT- 148 (235)
Q Consensus 83 v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~----~--t~G~s- 148 (235)
++||++++... .++|++++ ||+..|+|++++.+++.+|++.++.+. ...+.....+.. . .+.|.
T Consensus 162 ~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GN 239 (287)
T CHL00181 162 LVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFAN 239 (287)
T ss_pred EEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCcc
Confidence 77877775321 34699999 999999999999999999999999764 112222322222 2 34566
Q ss_pred HHHHHHHHHHHHHHH
Q psy10044 149 GADLENMVNQAALRA 163 (235)
Q Consensus 149 ~~di~~l~~~A~~~a 163 (235)
++++++++++|...-
T Consensus 240 aR~vrn~ve~~~~~~ 254 (287)
T CHL00181 240 ARSVRNALDRARMRQ 254 (287)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999886543
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=3.1e-13 Score=130.29 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=128.6
Q ss_pred CCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+..++.++++.+. .+|.|+.+.+++++|+.+++..|+||||||+|.|++.+...+++.. .-+.|...+. +
T Consensus 237 ~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~---~~~~L~~~l~----~ 309 (731)
T TIGR02639 237 KNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD---ASNLLKPALS----S 309 (731)
T ss_pred cCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH---HHHHHHHHHh----C
Confidence 47889999999998 5899999999999999998888999999999999986543322211 2233333333 4
Q ss_pred CCeEEEEecCCC-----CcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc------cCCCCCHHHHHhcCCCCC-
Q psy10044 81 EGVVVLGATNRR-----DDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI------VSKNIDVDTLARGTTGFT- 148 (235)
Q Consensus 81 ~~v~vIatTn~~-----~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~------~~~~~~l~~la~~t~G~s- 148 (235)
+.+.+||+||.. ..+|+|+.| ||+ .|+++.|+.+++.+|++.....+ ...+..+..++..+..|-
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 679999999963 368999999 997 79999999999999999877553 112333666777666554
Q ss_pred ----HHHHHHHHHHHHHHHHHc----CCCCCcHHHHHHHHHHhhCCc
Q psy10044 149 ----GADLENMVNQAALRAAID----GVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 149 ----~~di~~l~~~A~~~a~~~----~~~~i~~~~~~~al~~~~~~~ 187 (235)
|.---.++++|......+ ....++.+|+..++.+...-+
T Consensus 387 ~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP 433 (731)
T TIGR02639 387 DRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIP 433 (731)
T ss_pred cccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCC
Confidence 444456667765433322 234699999999999886443
No 46
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=1e-12 Score=126.16 Aligned_cols=176 Identities=17% Similarity=0.229 Sum_probs=129.4
Q ss_pred CCCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 2 VTHPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 2 ~s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+.+..++.++.+.++ .+|.|+.+.+++.+|+.+++..|+||||||+|.+++.++..+.. ....+.|...+ .
T Consensus 240 l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~---~d~~nlLkp~L----~ 312 (758)
T PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ---VDAANLIKPLL----S 312 (758)
T ss_pred hcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH---HHHHHHHHHHH----h
Confidence 356778888888777 57899999999999999998889999999999999876432222 12222222222 3
Q ss_pred CCCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCH-----HHHHhc-----
Q psy10044 80 NEGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDV-----DTLARG----- 143 (235)
Q Consensus 80 ~~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l-----~~la~~----- 143 (235)
+..+.+||+||.++ ..|++|.| ||+ .|+++.|+.+++..||+.+..++ ...++++ ..++..
T Consensus 313 ~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 56799999999865 57999999 996 79999999999999999887665 2333432 222322
Q ss_pred CCCCCHHHHHHHHHHHHHHHH----HcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 144 TTGFTGADLENMVNQAALRAA----IDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~----~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
+..+-|.....++++|..... ...+..++.+|+.+.+.+....+
T Consensus 390 ~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred cCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 345677889999999875432 22344689999999988876554
No 47
>KOG0743|consensus
Probab=99.45 E-value=4.5e-13 Score=119.19 Aligned_cols=127 Identities=24% Similarity=0.363 Sum_probs=94.8
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCC-----C-ccHHHHHHHHHHHhcCCCCCC--CeEEEEecCCCCcccHH
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL-----H-PYANQTINQLLAEMDGFHQNE--GVVVLGATNRRDDLDKA 98 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~-----~-~~~~~~~~~ll~~ld~~~~~~--~v~vIatTn~~~~ld~a 98 (235)
++.++..+.. .|||+|+|||+-+.-++.... . ....-.++.||+.+||+-... --++|.|||+++.||||
T Consensus 277 Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPA 354 (457)
T KOG0743|consen 277 LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPA 354 (457)
T ss_pred HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHh
Confidence 7777766644 389999999998764432211 1 123457899999999995544 46778899999999999
Q ss_pred hhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCC--CCHHHHHHHH
Q psy10044 99 LLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTG--FTGADLENMV 156 (235)
Q Consensus 99 l~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G--~s~~di~~l~ 156 (235)
|+||||+|.+|+++..+.++-+.++..||.--... .=..++.+..+| .||||+....
T Consensus 355 LlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h-~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 355 LLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDH-RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCc-chhHHHHHHhhcCccCHHHHHHHH
Confidence 99999999999999999999999999999653211 113344433333 7999987654
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.39 E-value=1e-11 Score=105.75 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=108.7
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+..+++.++++++.+.|+|+++.+++++|+.|. ++||||||+|.|.... +.......++.++..|+.. ..+
T Consensus 73 ~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~--~~~ 143 (261)
T TIGR02881 73 SKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN--RNE 143 (261)
T ss_pred cCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc--CCC
Confidence 455899999999999999999999999998884 5899999999996421 1222355778888888864 345
Q ss_pred eEEEEecCCC-----CcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhc---------CCC
Q psy10044 83 VVVLGATNRR-----DDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARG---------TTG 146 (235)
Q Consensus 83 v~vIatTn~~-----~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~---------t~G 146 (235)
+++|++++.. ..++|++++ ||+..++|+.++.+++.+|++.++.... .++.-+..+++. ...
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~ 221 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREF 221 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCC
Confidence 5666554322 247899999 9999999999999999999999986541 122123333221 112
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy10044 147 FTGADLENMVNQAALRAA 164 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~ 164 (235)
-.++.+.++++.|.....
T Consensus 222 gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 222 SNARYVRNIIEKAIRRQA 239 (261)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 356778888887765443
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.33 E-value=1.8e-11 Score=105.56 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=112.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
.-+|+.++++++.+.|.|+++.+++.+|+.|. +++|||||+|.+...+.. ......+.+.|+..|+. ...++
T Consensus 90 ~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~--~~~~~ 161 (284)
T TIGR02880 90 KGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMEN--QRDDL 161 (284)
T ss_pred cceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhc--CCCCE
Confidence 34899999999999999999999999999874 489999999999754321 23345677888888874 34567
Q ss_pred EEEEecCC--CC---cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhc------CCCCC-H
Q psy10044 84 VVLGATNR--RD---DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARG------TTGFT-G 149 (235)
Q Consensus 84 ~vIatTn~--~~---~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~------t~G~s-~ 149 (235)
+||++++. ++ .++|++.+ ||+..|+||+++.+++..|++.++.+.. .+...+..+.+. -+.+. +
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 88887754 23 24899999 9999999999999999999999997741 111112233322 13343 7
Q ss_pred HHHHHHHHHHHHHHH
Q psy10044 150 ADLENMVNQAALRAA 164 (235)
Q Consensus 150 ~di~~l~~~A~~~a~ 164 (235)
++++++++.|.....
T Consensus 240 R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 240 RSIRNAIDRARLRQA 254 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998865544
No 50
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.26 E-value=9e-11 Score=114.60 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=119.6
Q ss_pred CCCCeeEEeccchhhh--hhccHHHHHHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 2 VTHPDTNHAQGPEFDE--VLVGQGARRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 2 ~s~~~~~~v~~s~l~~--~~~g~~~~~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
+.+..++.++.+.+.. .|.|+.+.+++.+|+.++. ..++||||||+|.+.+.++..+... ..+.|+-.+
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~n~Lkp~l---- 312 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD----AANLLKPAL---- 312 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc----HHHHhhHHh----
Confidence 4567789999888873 6899999999999999975 4689999999999998765322111 223333333
Q ss_pred CCCCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc------CCCCCHHHHHhcCCCC
Q psy10044 79 QNEGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV------SKNIDVDTLARGTTGF 147 (235)
Q Consensus 79 ~~~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~------~~~~~l~~la~~t~G~ 147 (235)
.++.+.+||||+..+ .+|+||.| ||. .|+++.|+.+++..||+.+...+. ..+..+..++..+.+|
T Consensus 313 ~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 313 ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 256799999998643 59999999 996 899999999999999877765431 1233466777777665
Q ss_pred -----CHHHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHH
Q psy10044 148 -----TGADLENMVNQAALRAAI-DGVPHVTMKYLEYAR 180 (235)
Q Consensus 148 -----s~~di~~l~~~A~~~a~~-~~~~~i~~~~~~~al 180 (235)
-|.---.++.+|...... ....+...+++++.+
T Consensus 390 i~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 390 IPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 456667777887654443 344455555555444
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.24 E-value=8.3e-11 Score=114.19 Aligned_cols=167 Identities=21% Similarity=0.248 Sum_probs=112.5
Q ss_pred CCCeeEEeccchhh---------hhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFD---------EVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 73 (235)
Q Consensus 3 s~~~~~~v~~s~l~---------~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ 73 (235)
.+.+|+.++++.+. ..|.|....++.+.|..|....| ||||||||.+..+..++ ..+.|+..
T Consensus 371 l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ 441 (775)
T TIGR00763 371 LNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEV 441 (775)
T ss_pred hcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHh
Confidence 36788888765432 35788888889999999877666 88999999998643211 23556666
Q ss_pred hcC-----CC--------CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC-------ccC-
Q psy10044 74 MDG-----FH--------QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK-------IVS- 132 (235)
Q Consensus 74 ld~-----~~--------~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~-------~~~- 132 (235)
+|. +. ..+++++|+|||.++.+|++|++ ||+ .|+|+.|+.+++..|++.++.. +..
T Consensus 442 ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~ 518 (775)
T TIGR00763 442 LDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPD 518 (775)
T ss_pred cCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 653 11 12578999999999999999999 996 7999999999999999988722 111
Q ss_pred ----CCCCHHHHHh-cCCCCCHHHHHHH----HHHHHHHHHHcCC--------CCCcHHHHHHHHH
Q psy10044 133 ----KNIDVDTLAR-GTTGFTGADLENM----VNQAALRAAIDGV--------PHVTMKYLEYARD 181 (235)
Q Consensus 133 ----~~~~l~~la~-~t~G~s~~di~~l----~~~A~~~a~~~~~--------~~i~~~~~~~al~ 181 (235)
++..+..+++ .|..+..++|++. |+.++......+. -.++.++++.-+.
T Consensus 519 ~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 519 ELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred eEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 1122445555 3444555665554 4444443332222 2578887777654
No 52
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.11 E-value=2.4e-10 Score=111.83 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=92.1
Q ss_pred CCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 3 THPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 3 s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
.|.+++.++.+.+. .+|.|+.+.+++.+|+.+.+ ..|+||||||+|.+.+.+++.+.. ... +.|.-.+ .
T Consensus 233 ~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~-d~~---~~lkp~l----~ 304 (857)
T PRK10865 233 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM-DAG---NMLKPAL----A 304 (857)
T ss_pred CCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch-hHH---HHhcchh----h
Confidence 47899999998887 56899999999999998654 568999999999999876543322 122 2222222 3
Q ss_pred CCCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 80 NEGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 80 ~~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
++.+.+||||+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+...+
T Consensus 305 ~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 305 RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 57899999999876 48999999 998 58899999999999999887554
No 53
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.09 E-value=1.3e-09 Score=106.45 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=110.2
Q ss_pred CCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+.+++.++.+.++ .+|.|+.+.+++.+|+.++...|+||||||+|.|++..+..+. .... +.|...+. +
T Consensus 234 ~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~~a---~lLkp~l~----r 305 (821)
T CHL00095 234 EDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-IDAA---NILKPALA----R 305 (821)
T ss_pred cCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-ccHH---HHhHHHHh----C
Confidence 46889999999988 5789999999999999998888999999999999987643322 1112 22222222 5
Q ss_pred CCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc------cCCCCCHHHHHhcCCCCC-
Q psy10044 81 EGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI------VSKNIDVDTLARGTTGFT- 148 (235)
Q Consensus 81 ~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~------~~~~~~l~~la~~t~G~s- 148 (235)
+.+.+||+|+..+ ..|+++.+ ||. .|+++.|+.++...|++.....+ ...+..+..++..+.+|.
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 6789999999764 58999999 997 58999999999999998765432 112223566666666654
Q ss_pred ----HHHHHHHHHHHHHHHHH
Q psy10044 149 ----GADLENMVNQAALRAAI 165 (235)
Q Consensus 149 ----~~di~~l~~~A~~~a~~ 165 (235)
|.---.++.+|......
T Consensus 383 ~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred cccCchHHHHHHHHHHHHHHh
Confidence 45555677776654443
No 54
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.07 E-value=2.9e-09 Score=104.43 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=110.8
Q ss_pred CCCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhhC-CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 2 VTHPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 2 ~s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~~-~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
+.+.+++.++.+.+. .+|.|+.+++++.+|+.+... .|+||||||+|.|++.++..+. ....+.|.- .-
T Consensus 227 l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~----~d~~~~Lk~----~l 298 (852)
T TIGR03346 227 LKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA----MDAGNMLKP----AL 298 (852)
T ss_pred hcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch----hHHHHHhch----hh
Confidence 357889999988886 579999999999999998764 5899999999999875543221 112222222 22
Q ss_pred CCCCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cC-----CCCCHHHHHhcCCCC
Q psy10044 79 QNEGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VS-----KNIDVDTLARGTTGF 147 (235)
Q Consensus 79 ~~~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~-----~~~~l~~la~~t~G~ 147 (235)
.+..+.+||+||..+ .+|+++.| ||. .|.++.|+.+++..|++.+..++ .. .+..+..++..+.+|
T Consensus 299 ~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 299 ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 356799999999764 58999999 997 58999999999999999886664 11 233455666666554
Q ss_pred -----CHHHHHHHHHHHHHHHHH
Q psy10044 148 -----TGADLENMVNQAALRAAI 165 (235)
Q Consensus 148 -----s~~di~~l~~~A~~~a~~ 165 (235)
-|.---.++++|...+..
T Consensus 376 i~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 376 ITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred ccccCCchHHHHHHHHHHHHHHh
Confidence 455666677777655443
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.95 E-value=2e-08 Score=92.06 Aligned_cols=166 Identities=20% Similarity=0.316 Sum_probs=112.1
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
+..++++++.+|.+.+.+.....-..-|..... .+.+|+|||+|.+.+++. ....|+..++.+..+.+.
T Consensus 178 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~----------~~~~l~~~~n~l~~~~~~ 246 (450)
T PRK00149 178 NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER----------TQEEFFHTFNALHEAGKQ 246 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH----------HHHHHHHHHHHHHHCCCc
Confidence 567889999998877655543222223333222 478999999999865431 112333333333223344
Q ss_pred EEEEecCCCCc---ccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 84 VVLGATNRRDD---LDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 84 ~vIatTn~~~~---ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
++|+++..|.. +++.+.+ ||. ..+++.+|+.++|..|++..+... ..++.-++.||+.+.| +.++|..++
T Consensus 247 iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l 323 (450)
T PRK00149 247 IVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGAL 323 (450)
T ss_pred EEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHH
Confidence 66666666655 7799999 996 689999999999999999998653 2233347777877664 788888888
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
+.....+...+ ..||.+.+.+++....
T Consensus 324 ~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 324 NRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 87766665554 4488888888888764
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.93 E-value=7.9e-08 Score=84.54 Aligned_cols=141 Identities=20% Similarity=0.215 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC----------------CCCCeEEEEec
Q psy10044 26 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH----------------QNEGVVVLGAT 89 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v~vIatT 89 (235)
.+..++... ..++||||||+|.+.... ... +...|+... .-.++.+|++|
T Consensus 92 ~l~~~l~~l--~~~~vl~IDEi~~l~~~~---------~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 92 DLAAILTNL--EEGDVLFIDEIHRLSPVV---------EEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred HHHHHHHhc--ccCCEEEEecHhhcchHH---------HHH---HHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 344444443 347899999999985321 111 222222110 11347889999
Q ss_pred CCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q psy10044 90 NRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDG 167 (235)
Q Consensus 90 n~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~ 167 (235)
|++..++++|++ ||...+++++|+.+++.+|++...... ..++.-+..+++.+.| +++.+..++..+...+..++
T Consensus 158 ~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~ 234 (328)
T PRK00080 158 TRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVKG 234 (328)
T ss_pred CCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999999999999887654 2233347788888887 45888888888777777766
Q ss_pred CCCCcHHHHHHHHHHh
Q psy10044 168 VPHVTMKYLEYARDKV 183 (235)
Q Consensus 168 ~~~i~~~~~~~al~~~ 183 (235)
...|+.+++..++..+
T Consensus 235 ~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 235 DGVITKEIADKALDML 250 (328)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7789999999999775
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.91 E-value=4.6e-08 Score=87.81 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=103.8
Q ss_pred HHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---cccHHhhC
Q psy10044 26 RVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD---DLDKALLR 101 (235)
Q Consensus 26 ~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~---~ld~al~r 101 (235)
.++.+++.... ..+.||+|||+|.+..+.. ...+..|+..++... ..++.+|+++|.++ .+++.+.+
T Consensus 125 ~~~~~~~~l~~~~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s 195 (394)
T PRK00411 125 LFDKIAEYLDERDRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS 195 (394)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHhHhhccCC--------chHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh
Confidence 34444444443 3478999999999982211 125666666665543 24788889888764 57888877
Q ss_pred CCccc-EEEEcCCCCHHHHHHHHHHHhcCcc----CCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHcCCCCCcHH
Q psy10044 102 PGRFD-IEVNVPPPDYTGRREILDLYLGKIV----SKNIDVDTLARGTTGF--TGADLENMVNQAALRAAIDGVPHVTMK 174 (235)
Q Consensus 102 pgRf~-~~i~i~~P~~~~R~~il~~~l~~~~----~~~~~l~~la~~t~G~--s~~di~~l~~~A~~~a~~~~~~~i~~~ 174 (235)
||. ..|.|++++.++..+|++..+.... ..+..++.+++.+.+. ..+..-.+|..|...|..++...|+.+
T Consensus 196 --~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~ 273 (394)
T PRK00411 196 --VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEE 273 (394)
T ss_pred --cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 663 5789999999999999998875321 1222355666666432 234556788888888888888999999
Q ss_pred HHHHHHHHhhC
Q psy10044 175 YLEYARDKVLM 185 (235)
Q Consensus 175 ~~~~al~~~~~ 185 (235)
++..|+.++..
T Consensus 274 ~v~~a~~~~~~ 284 (394)
T PRK00411 274 DVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHH
Confidence 99999988743
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.89 E-value=1.3e-07 Score=82.07 Aligned_cols=131 Identities=21% Similarity=0.204 Sum_probs=98.4
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC----------------CCCCeEEEEecCCCCcccHHhhC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH----------------QNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v~vIatTn~~~~ld~al~r 101 (235)
.+.+|||||+|.+.... ...|...++... ...++.+|++||++..+++++++
T Consensus 81 ~~~vl~iDEi~~l~~~~------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAV------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred cCCEEEEehHhhhCHHH------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh
Confidence 46899999999985421 112222222111 12348899999999999999999
Q ss_pred CCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 102 PGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 102 pgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
||...+.+++|+.+++.++++...... ..++..++.+++.+.|.- +.+..+++.+...|...+...++.+++..+
T Consensus 149 --R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~~~~~it~~~v~~~ 225 (305)
T TIGR00635 149 --RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVRGQKIINRDIALKA 225 (305)
T ss_pred --hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 999999999999999999999887643 223334778888888844 777888888777776666677999999999
Q ss_pred HHHh
Q psy10044 180 RDKV 183 (235)
Q Consensus 180 l~~~ 183 (235)
+..+
T Consensus 226 l~~l 229 (305)
T TIGR00635 226 LEML 229 (305)
T ss_pred HHHh
Confidence 9884
No 59
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.88 E-value=5.3e-08 Score=88.03 Aligned_cols=165 Identities=19% Similarity=0.313 Sum_probs=108.1
Q ss_pred CCeeEEeccchhhhhhccHHHH-HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGAR-RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~-~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+..++++++.+|...+.+.... .+..+.+..+ .+.+|+|||+|.+.+++. ....|+..++.+..+..
T Consensus 166 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~----------~~~~l~~~~n~~~~~~~ 233 (405)
T TIGR00362 166 NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER----------TQEEFFHTFNALHENGK 233 (405)
T ss_pred CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH----------HHHHHHHHHHHHHHCCC
Confidence 5678899998887765543321 2222222222 357999999999865321 11233333333322334
Q ss_pred eEEEEecCCCCc---ccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHH
Q psy10044 83 VVVLGATNRRDD---LDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENM 155 (235)
Q Consensus 83 v~vIatTn~~~~---ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l 155 (235)
.+||+++..|.. +++.+.+ ||. ..+++++|+.++|..|++..+... ..++..++.+|+... -+.++|..+
T Consensus 234 ~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~ 310 (405)
T TIGR00362 234 QIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIR-SNVRELEGA 310 (405)
T ss_pred CEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHH
Confidence 466666666654 5688888 996 579999999999999999998654 223334777887765 477888888
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 156 VNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 156 ~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
++.-...|...+ ..||.+.+.+++....
T Consensus 311 l~~l~~~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 311 LNRLLAYASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 887665555444 4588888888877653
No 60
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=98.88 E-value=2.5e-09 Score=88.53 Aligned_cols=59 Identities=44% Similarity=0.624 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEec
Q psy10044 172 TMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLS 232 (235)
Q Consensus 172 ~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
|++||++|++++..|.+++.+..+.+.++++|+||+||||++++++... ++++++|.|.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~--~v~~vsi~pr 59 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPAD--PVSKVSIVPR 59 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS-----EEEEESSTT
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccc--cEEEEEEecC
Confidence 6899999999999999876666778888999999999999999998877 8899999985
No 61
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.86 E-value=9.1e-08 Score=85.01 Aligned_cols=148 Identities=24% Similarity=0.269 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCC---cccHHh
Q psy10044 25 RRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-HQNEGVVVLGATNRRD---DLDKAL 99 (235)
Q Consensus 25 ~~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-~~~~~v~vIatTn~~~---~ld~al 99 (235)
..++.+++.... ..|.||+|||+|.+.... ..++..++...+.. ..+.++.+|++||.++ .+++.+
T Consensus 115 ~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~ 185 (365)
T TIGR02928 115 EVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRV 185 (365)
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHH
Confidence 345556665543 457899999999997211 12444554432111 2236789999999886 588898
Q ss_pred hCCCccc-EEEEcCCCCHHHHHHHHHHHhcCc-cC---CCCCHHH---HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Q psy10044 100 LRPGRFD-IEVNVPPPDYTGRREILDLYLGKI-VS---KNIDVDT---LARGTTGFTGADLENMVNQAALRAAIDGVPHV 171 (235)
Q Consensus 100 ~rpgRf~-~~i~i~~P~~~~R~~il~~~l~~~-~~---~~~~l~~---la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i 171 (235)
.+ ||. ..++|++++.++..+|++..+... .. ++.-+.. ++..+.|. .+..-.+|..|...|..++...|
T Consensus 186 ~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~i 262 (365)
T TIGR02928 186 KS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERV 262 (365)
T ss_pred hc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCC
Confidence 88 775 679999999999999999988521 11 1111233 33334443 44556688889988988888899
Q ss_pred cHHHHHHHHHHhh
Q psy10044 172 TMKYLEYARDKVL 184 (235)
Q Consensus 172 ~~~~~~~al~~~~ 184 (235)
+.+++..|+....
T Consensus 263 t~~~v~~a~~~~~ 275 (365)
T TIGR02928 263 TEDHVEKAQEKIE 275 (365)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988774
No 62
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.84 E-value=9.5e-08 Score=87.30 Aligned_cols=166 Identities=15% Similarity=0.213 Sum_probs=107.6
Q ss_pred CCeeEEeccchhhhhhccHHH-HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGA-RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~-~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+..++++++.+|...+..... ..+.. |....+..+.+|+|||++.+.++.. ...+|...++.+....+
T Consensus 160 ~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~----------~q~elf~~~n~l~~~~k 228 (440)
T PRK14088 160 DLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG----------VQTELFHTFNELHDSGK 228 (440)
T ss_pred CCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH----------HHHHHHHHHHHHHHcCC
Confidence 456788899888776543321 22333 3333334689999999999865321 11223333333322344
Q ss_pred eEEEEecCCCCc---ccHHhhCCCcc--cEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHH
Q psy10044 83 VVVLGATNRRDD---LDKALLRPGRF--DIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENM 155 (235)
Q Consensus 83 v~vIatTn~~~~---ld~al~rpgRf--~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l 155 (235)
.+|+++.+.|.. +++.+.+ || ...+.+.+|+.+.|..|++..+... ..++.-++.||+...| +.++|..+
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~ 305 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGA 305 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHH
Confidence 566666666665 5677888 87 4678999999999999999988643 2233337778887764 78888888
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 156 VNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 156 ~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
+++-...+...+ ..+|.+...+++..+.
T Consensus 306 l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 306 IIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 887655555444 4488888888887764
No 63
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.5e-08 Score=93.52 Aligned_cols=174 Identities=17% Similarity=0.209 Sum_probs=122.8
Q ss_pred CCCeeEEeccchhhh---------hhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDE---------VLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 73 (235)
Q Consensus 3 s~~~~~~v~~s~l~~---------~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ 73 (235)
.|..|+.++-.-..+ .|+|.-..+|-+-..+|....| +++|||||.+..+-.++ -.+.||.-
T Consensus 374 l~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD--------PaSALLEV 444 (782)
T COG0466 374 LGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD--------PASALLEV 444 (782)
T ss_pred hCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC--------hHHHHHhh
Confidence 467788887654433 4999999999999999999887 67789999998753221 12556666
Q ss_pred hcCCCCC-------------CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-------cCC
Q psy10044 74 MDGFHQN-------------EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-------VSK 133 (235)
Q Consensus 74 ld~~~~~-------------~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-------~~~ 133 (235)
+|.-.++ ++|++|+|+|+.+.||.+|+. |+. .|++.-.+.++..+|.+.||=.. ...
T Consensus 445 LDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~ 521 (782)
T COG0466 445 LDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG 521 (782)
T ss_pred cCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCcc
Confidence 6643221 469999999999999999999 996 89999999999999999998321 112
Q ss_pred CCC-----HHHHHhc-C--CCCC--HHHHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHhhCCcc
Q psy10044 134 NID-----VDTLARG-T--TGFT--GADLENMVNQAALRAAIDGVP---HVTMKYLEYARDKVLMGPE 188 (235)
Q Consensus 134 ~~~-----l~~la~~-t--~G~s--~~di~~l~~~A~~~a~~~~~~---~i~~~~~~~al~~~~~~~~ 188 (235)
.+. +..+.+. | .|.- -++|..+|+.++..-+..... .++.+++..-+....+...
T Consensus 522 el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~ 589 (782)
T COG0466 522 ELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYG 589 (782)
T ss_pred ceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCcc
Confidence 222 3333332 1 1221 267788888887666654433 4788888887766665543
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.77 E-value=1.6e-07 Score=83.08 Aligned_cols=152 Identities=22% Similarity=0.321 Sum_probs=104.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC----CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT----PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~----P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
++.+|..+|+ +-.+.+.|+++|+.|++.. ..|||+|||+.|-..++ ..||-.++
T Consensus 72 ~~~~f~~~sA-------v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ------------D~lLp~vE--- 129 (436)
T COG2256 72 TNAAFEALSA-------VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ------------DALLPHVE--- 129 (436)
T ss_pred hCCceEEecc-------ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh------------hhhhhhhc---
Confidence 5778888887 4456799999999996544 48999999999854332 34666666
Q ss_pred CCCCeEEEEec--CCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc----cCCCCC-----HHHHHhcCCCC
Q psy10044 79 QNEGVVVLGAT--NRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI----VSKNID-----VDTLARGTTGF 147 (235)
Q Consensus 79 ~~~~v~vIatT--n~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~----~~~~~~-----l~~la~~t~G~ 147 (235)
++.|++|||| |..-.|.+||++ |. .++++.+.+.++-..+++..+... ....+. ++.++. .
T Consensus 130 -~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~----~ 201 (436)
T COG2256 130 -NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR----L 201 (436)
T ss_pred -CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH----h
Confidence 5778888877 445689999999 76 478899999999999999844322 112222 344555 5
Q ss_pred CHHHHHHHHHHHHHHHH--HcCCCCCcHHHHHHHHHHhhC
Q psy10044 148 TGADLENMVNQAALRAA--IDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 148 s~~di~~l~~~A~~~a~--~~~~~~i~~~~~~~al~~~~~ 185 (235)
+.+|.+.+++..-+.+. +.+. .++.+++++++.+...
T Consensus 202 s~GD~R~aLN~LE~~~~~~~~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 202 SNGDARRALNLLELAALSAEPDE-VLILELLEEILQRRSA 240 (436)
T ss_pred cCchHHHHHHHHHHHHHhcCCCc-ccCHHHHHHHHhhhhh
Confidence 66788777774432222 2232 4558888888877654
No 65
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.75 E-value=8.4e-08 Score=89.58 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=77.2
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
.++.+|||.|+.++|++++ |+. .+.|++++.+++.+|++..+++.. .++.-++.++..+. +++++.++++.|.
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 4555677889999999999 985 788999999999999999987652 22223555666553 7899999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 161 LRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
..|..+++..|+.+|++.++..-
T Consensus 310 ~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 310 GIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHhhCCCcEEcHHHHHHHhCCc
Confidence 88888888889999999998643
No 66
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.67 E-value=5.8e-07 Score=84.37 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=107.6
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
|...+++++.+|.+.+..........-|..-. ..+.+|+|||++.+.++.. ....+-.+++.+. .+++-
T Consensus 344 g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~-------tqeeLF~l~N~l~---e~gk~ 412 (617)
T PRK14086 344 GTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES-------TQEEFFHTFNTLH---NANKQ 412 (617)
T ss_pred CCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH-------HHHHHHHHHHHHH---hcCCC
Confidence 56788999999988776554433333454332 2468999999999875432 1112222333322 22333
Q ss_pred EEEEecCCC----CcccHHhhCCCcc--cEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHH
Q psy10044 84 VVLGATNRR----DDLDKALLRPGRF--DIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENM 155 (235)
Q Consensus 84 ~vIatTn~~----~~ld~al~rpgRf--~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l 155 (235)
+|| |+|.+ ..+++.|++ || ...+++..|+.+.|..||+...... ...+.-+..|++... =+.++|..+
T Consensus 413 III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~-rnvR~Lega 488 (617)
T PRK14086 413 IVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS-RNIRELEGA 488 (617)
T ss_pred EEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc-CCHHHHHHH
Confidence 444 55553 357899999 88 5677999999999999999988654 223333666777665 367888888
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 156 VNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 156 ~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
+++-...+...+ ..||.+..++.++.+..
T Consensus 489 L~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 489 LIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 887655555444 44787777777776644
No 67
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.66 E-value=4.1e-07 Score=88.38 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=111.1
Q ss_pred CCCeeEEeccchhhh---------hhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDE---------VLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 73 (235)
Q Consensus 3 s~~~~~~v~~s~l~~---------~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ 73 (235)
.|.+|+.++.+...+ .|.|.....+.+.+..+....| |++|||+|.+..+..+. ..+.|+..
T Consensus 373 l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~--------~~~aLlev 443 (784)
T PRK10787 373 TGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD--------PASALLEV 443 (784)
T ss_pred hCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC--------HHHHHHHH
Confidence 466788777655332 4677777777777777765555 78999999997643211 34566666
Q ss_pred hcCC-----C--------CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC-c------cCC
Q psy10044 74 MDGF-----H--------QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK-I------VSK 133 (235)
Q Consensus 74 ld~~-----~--------~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~-~------~~~ 133 (235)
+|.- . .-++|++|+|||.. .|||+|+. ||+ .|.+..++.++..+|.+.++.. . ...
T Consensus 444 ld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~ 519 (784)
T PRK10787 444 LDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKG 519 (784)
T ss_pred hccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCC
Confidence 6631 1 22679999999987 59999999 996 7999999999999999999842 1 111
Q ss_pred CCC-----HHHHHh-cCCCCCHHHHHHHHHHHHHHHH----HcCC---CCCcHHHHHHHHHHhh
Q psy10044 134 NID-----VDTLAR-GTTGFTGADLENMVNQAALRAA----IDGV---PHVTMKYLEYARDKVL 184 (235)
Q Consensus 134 ~~~-----l~~la~-~t~G~s~~di~~l~~~A~~~a~----~~~~---~~i~~~~~~~al~~~~ 184 (235)
.+. +..+++ .+..+-.+.|++.++.....++ ..+. -.++.+++.+.+..-.
T Consensus 520 ~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 520 ELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred eEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCc
Confidence 111 444443 2345555676666665443333 2222 2588888888765443
No 68
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.61 E-value=8e-07 Score=85.78 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=106.5
Q ss_pred CCeeEEeccchhhhhh----------------cc-HHHHHHHHHHHHHh--hCCCeEEEEccccccccccCCCCCCccHH
Q psy10044 4 HPDTNHAQGPEFDEVL----------------VG-QGARRVRDLFKAAK--DRTPCVVFIDEIDSVGAKRTNSVLHPYAN 64 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~----------------~g-~~~~~i~~~F~~A~--~~~P~Il~iDeiD~l~~~r~~~~~~~~~~ 64 (235)
.+.+++|+|..+...+ .| .+...+..+|.... .....||+|||||.|..+. .
T Consensus 816 ~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------Q 886 (1164)
T PTZ00112 816 SFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------Q 886 (1164)
T ss_pred CceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH---------H
Confidence 3567889885533321 01 23456777777653 2335799999999997531 2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCC---CCcccHHhhCCCcccE-EEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHH
Q psy10044 65 QTINQLLAEMDGFHQNEGVVVLGATNR---RDDLDKALLRPGRFDI-EVNVPPPDYTGRREILDLYLGKIV--SKNIDVD 138 (235)
Q Consensus 65 ~~~~~ll~~ld~~~~~~~v~vIatTn~---~~~ld~al~rpgRf~~-~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~ 138 (235)
.++-.|..... ....+++|||.+|. ++.|+|.+++ ||.. .|.|++++.++..+||+..+.... .++.-+.
T Consensus 887 DVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIE 962 (1164)
T PTZ00112 887 KVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQ 962 (1164)
T ss_pred HHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 23444444322 23467999999986 6678899988 7653 488899999999999999886531 1222255
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 139 TLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 139 ~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
.+|+... ...+|++..++-....+...+...|+.+++.+|+.++..+
T Consensus 963 LIArkVA-q~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 963 LCARKVA-NVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred HHHHhhh-hcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhh
Confidence 5566444 3346666554422222222344579999999999877443
No 69
>KOG2004|consensus
Probab=98.56 E-value=2.1e-07 Score=87.24 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=89.2
Q ss_pred CCeeEEeccchhhh---------hhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHh
Q psy10044 4 HPDTNHAQGPEFDE---------VLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 74 (235)
Q Consensus 4 ~~~~~~v~~s~l~~---------~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~l 74 (235)
|..|+.+|-.-+.+ .|+|....+|-+.++.++...| +++|||+|.++. +..++. -+.||..+
T Consensus 463 nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDP------asALLElL 533 (906)
T KOG2004|consen 463 NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDP------ASALLELL 533 (906)
T ss_pred CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCCh------HHHHHHhc
Confidence 55677776544443 4999999999999999998887 677899999983 222221 25566666
Q ss_pred cCCCC-------------CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC
Q psy10044 75 DGFHQ-------------NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 75 d~~~~-------------~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~ 129 (235)
|.-.+ -++|++|+|+|..+.||++|+. |+. .|+++-...++...|.+.||-.
T Consensus 534 DPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 534 DPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred ChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 64322 1469999999999999999999 996 8999999999999999999843
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.55 E-value=5.2e-06 Score=75.33 Aligned_cols=149 Identities=23% Similarity=0.327 Sum_probs=99.2
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+.+|+.++++. .+...++.+++.+.. ....+|||||+|.+... ..+.|+..++.
T Consensus 61 ~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~------------~q~~LL~~le~--- 118 (413)
T PRK13342 61 DAPFEALSAVT-------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA------------QQDALLPHVED--- 118 (413)
T ss_pred CCCEEEEeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH------------HHHHHHHHhhc---
Confidence 56777777743 234566777777642 25689999999987431 23455555552
Q ss_pred CCCeEEEEecC--CCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc-----CCCCCHHHHHhcCCCCCHHHH
Q psy10044 80 NEGVVVLGATN--RRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV-----SKNIDVDTLARGTTGFTGADL 152 (235)
Q Consensus 80 ~~~v~vIatTn--~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~-----~~~~~l~~la~~t~G~s~~di 152 (235)
..+++|++|+ ....+++++++ |+ ..+.+++|+.++...+++..+.... .++..+..+++.+.| .++.+
T Consensus 119 -~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~a 193 (413)
T PRK13342 119 -GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRA 193 (413)
T ss_pred -CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHH
Confidence 4567776653 34589999999 88 6899999999999999998875421 112224566776533 45555
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 153 ENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 153 ~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
.++++.+... ...|+.+++.+++....
T Consensus 194 ln~Le~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 194 LNLLELAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHHHHHc-----cCCCCHHHHHHHHhhhh
Confidence 5555554432 45699999999887754
No 71
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.54 E-value=3.2e-06 Score=77.54 Aligned_cols=164 Identities=11% Similarity=0.184 Sum_probs=107.0
Q ss_pred CCeeEEeccchhhhhhccHHHH---HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGAR---RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~---~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+..++++++.+|...+...... .+..+.+.. ..+.+|+|||++.+.++.. ....+-.+++.+. ..
T Consensus 171 ~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~~-------~~e~lf~l~N~~~---~~ 238 (450)
T PRK14087 171 DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKEK-------TNEIFFTIFNNFI---EN 238 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCHH-------HHHHHHHHHHHHH---Hc
Confidence 5677899999998876654322 232222222 3467999999998854321 1222333333332 22
Q ss_pred CCeEEEEecCC-CC---cccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCcc----CCCCCHHHHHhcCCCCCHH
Q psy10044 81 EGVVVLGATNR-RD---DLDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKIV----SKNIDVDTLARGTTGFTGA 150 (235)
Q Consensus 81 ~~v~vIatTn~-~~---~ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~~----~~~~~l~~la~~t~G~s~~ 150 (235)
.+-+| .|+|. |. .+++.|.+ ||. ..+.+.+|+.++|..|++..+.... .++.-+..|+..+.| +++
T Consensus 239 ~k~iI-ltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R 314 (450)
T PRK14087 239 DKQLF-FSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVR 314 (450)
T ss_pred CCcEE-EECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHH
Confidence 33344 45544 44 35789999 984 7888999999999999999986531 122235567777665 889
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHh
Q psy10044 151 DLENMVNQAALRAAIDG-VPHVTMKYLEYARDKV 183 (235)
Q Consensus 151 di~~l~~~A~~~a~~~~-~~~i~~~~~~~al~~~ 183 (235)
.+..++++....+.... ...||.+.+.+++...
T Consensus 315 ~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 315 KIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 99999998876666553 3568999998888776
No 72
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.1e-06 Score=82.32 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=109.0
Q ss_pred CCCCeeEEeccchhhh--hhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 2 VTHPDTNHAQGPEFDE--VLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 2 ~s~~~~~~v~~s~l~~--~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+.+..++.++-+.+.. +|-|+.|.+++.+.+..++..+.||||||+|.+.+.....++.-...+++.-.| .
T Consensus 224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-------A 296 (786)
T COG0542 224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-------A 296 (786)
T ss_pred HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-------h
Confidence 3466778888877776 799999999999999999988999999999999987654332122333333333 2
Q ss_pred CCCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCC-----CHHHHHhc-----
Q psy10044 80 NEGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNI-----DVDTLARG----- 143 (235)
Q Consensus 80 ~~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~-----~l~~la~~----- 143 (235)
...+-+||||+.-+ .=|+||-| ||. .|.+..|+.++-..||+..-.++ .+..+ -+...+..
T Consensus 297 RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 297 RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 45678898887533 56999999 997 79999999999999999887665 22222 13333332
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy10044 144 TTGFTGADLENMVNQAALRAAI 165 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~~ 165 (235)
+.-|-|.---.++.+|......
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHh
Confidence 3445555556677776654444
No 73
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.51 E-value=2.9e-06 Score=77.66 Aligned_cols=167 Identities=17% Similarity=0.228 Sum_probs=99.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
|..++++++.+|...+.......-.+.|.... ..+.+|+|||++.+.++.. .. .+|...++.+....+.
T Consensus 169 ~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-------~q---eelf~l~N~l~~~~k~ 237 (445)
T PRK12422 169 GGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-------TQ---EEFFHTFNSLHTEGKL 237 (445)
T ss_pred CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-------hH---HHHHHHHHHHHHCCCc
Confidence 56778888888776544332211112344333 3468999999999865321 11 1222222222112334
Q ss_pred EEEEecCCCC---cccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 84 VVLGATNRRD---DLDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 84 ~vIatTn~~~---~ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
+++.+++.|. .+++.|++ ||. ..+.+.+|+.++|..|++...... ..++.-++.++....| ..++|...+
T Consensus 238 IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l 314 (445)
T PRK12422 238 IVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHAL 314 (445)
T ss_pred EEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 5555544454 56899999 995 899999999999999999988654 2222225556665553 566666666
Q ss_pred HHHHH-HHHHc-CCCCCcHHHHHHHHHHhh
Q psy10044 157 NQAAL-RAAID-GVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 157 ~~A~~-~a~~~-~~~~i~~~~~~~al~~~~ 184 (235)
+.... .|... ....+|.++.++++....
T Consensus 315 ~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 315 TLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 65531 12211 224588888888887764
No 74
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.50 E-value=1.7e-06 Score=71.58 Aligned_cols=153 Identities=10% Similarity=0.150 Sum_probs=96.7
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
+.++++++++++.... ..+++... .+.+|+|||+|.+.... .....+-.++..+. ..+..
T Consensus 66 ~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~---~~~~~ 125 (226)
T TIGR03420 66 GKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-------EWQEALFHLYNRVR---EAGGR 125 (226)
T ss_pred CCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHH---HcCCe
Confidence 4678888888876532 23333332 34699999999885421 11222333333332 12233
Q ss_pred EEEEecCCCCccc---HHhhCCCcc--cEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 84 VVLGATNRRDDLD---KALLRPGRF--DIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 84 ~vIatTn~~~~ld---~al~rpgRf--~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
+++.++..+..++ +.+.+ || ...+++++|+.+++..+++.+..+. ..++.-+..|++. -+-+.+++.+++
T Consensus 126 iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l 202 (226)
T TIGR03420 126 LLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALL 202 (226)
T ss_pred EEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444444454433 78887 76 4789999999999999999876543 2233336667774 667899999999
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
+++...+...+ ..|+.+.+.+.+
T Consensus 203 ~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 203 DALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHh
Confidence 98775555544 568888777654
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=6.2e-06 Score=73.61 Aligned_cols=136 Identities=17% Similarity=0.200 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...++++.+.+... ...|++|||+|.+.. ...+.||..++.. ...+.+|.+|+.++.+.+++
T Consensus 101 v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~a~naLLk~lEe~--~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 101 VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------HSFNALLKTLEEP--PQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------HHHHHHHHHHhcC--CCCeEEEEEcCChHhhhHHH
Confidence 34567776665422 235999999998732 2456788888753 45667777888899999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
++ |+ ..++|++|+.++..++++..+... ..++..+..+++.+.| +++++.++++.+... +...++.+++.
T Consensus 167 ~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~ 238 (363)
T PRK14961 167 LS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVT 238 (363)
T ss_pred Hh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHH
Confidence 98 87 579999999999999999877553 2233346667777765 777777777765432 45568888887
Q ss_pred HHHH
Q psy10044 178 YARD 181 (235)
Q Consensus 178 ~al~ 181 (235)
+++.
T Consensus 239 ~~l~ 242 (363)
T PRK14961 239 DMLG 242 (363)
T ss_pred HHHC
Confidence 7653
No 76
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.42 E-value=6.3e-06 Score=72.88 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...++++++.+... ...|++|||+|.+.. ...+.++..++.. ..++++|.+|+.++.+.+++
T Consensus 99 ~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l 164 (355)
T TIGR02397 99 VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLKTLEEP--PEHVVFILATTEPHKIPATI 164 (355)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHH
Confidence 45677888777542 235999999998732 2457788888753 35677788889999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
++ |+. .+++++|+.++...+++..+.+. ..++..+..+++.+.| +++.+.+.++.+...+ ...||.+++.
T Consensus 165 ~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~ 236 (355)
T TIGR02397 165 LS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISFG----NGNITYEDVN 236 (355)
T ss_pred Hh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHH
Confidence 99 874 78999999999999999887654 2233335666776654 6666666666554432 2348887776
Q ss_pred HHH
Q psy10044 178 YAR 180 (235)
Q Consensus 178 ~al 180 (235)
+++
T Consensus 237 ~~~ 239 (355)
T TIGR02397 237 ELL 239 (355)
T ss_pred HHh
Confidence 654
No 77
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=7.7e-06 Score=76.93 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=104.6
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+.+++.+++++ +.+...++++.+.+... ..-|++|||+|.+.. ...|.||..++..
T Consensus 87 ~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~a~naLLKtLEep-- 146 (559)
T PRK05563 87 LMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------GAFNALLKTLEEP-- 146 (559)
T ss_pred CCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHHHhcCC--
Confidence 45667776642 34456788888877532 246999999998832 2467888888753
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
...+++|.+|+.++.+++.+++ |+. .++|..|+.++-...++..+.+. ..++..+..+++.+.| +.++..+++.
T Consensus 147 p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ld 222 (559)
T PRK05563 147 PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILD 222 (559)
T ss_pred CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4567777778889999999998 875 68999999999988888887543 2233346677887776 7888888777
Q ss_pred HHHHHHHHcCCCCCcHHHHHHH
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~a 179 (235)
.+... +...||.+++...
T Consensus 223 q~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 223 QAISF----GDGKVTYEDALEV 240 (559)
T ss_pred HHHHh----ccCCCCHHHHHHH
Confidence 66543 2345777766554
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=8.1e-06 Score=75.70 Aligned_cols=151 Identities=14% Similarity=0.216 Sum_probs=106.9
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..++.+++++ ..+...++++++.+... ...|++|||+|.+.. ...+.|+..++. ..
T Consensus 97 ~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a~naLLk~LEe--pp 156 (507)
T PRK06645 97 PDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GAFNALLKTLEE--PP 156 (507)
T ss_pred CcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HHHHHHHHHHhh--cC
Confidence 4555555532 12356788888877543 236999999998832 346778877774 35
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
..+++|.+|+.++.+++++++ |+ ..++|..++.++...+++..+... ..++..+..+++.+.| +.+++.++++.
T Consensus 157 ~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldk 232 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQ 232 (507)
T ss_pred CCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 577888888889999999998 87 478999999999999999888653 2222336778888776 88999888888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHH
Q psy10044 159 AALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~al 180 (235)
+...+..+ ...||.+++.+.+
T Consensus 233 ai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 233 AASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHhhccC-CCCcCHHHHHHHH
Confidence 76554322 2357777776654
No 79
>PRK06893 DNA replication initiation factor; Validated
Probab=98.35 E-value=5.2e-06 Score=69.41 Aligned_cols=132 Identities=10% Similarity=0.040 Sum_probs=85.6
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc---HHhhCCCcccEEEEcCCC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD---KALLRPGRFDIEVNVPPP 114 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld---~al~rpgRf~~~i~i~~P 114 (235)
++.+|+|||++.+.+++ .....+-.+++.+. ..+..++++++++.|..++ |.|.+..+++..++++.|
T Consensus 91 ~~dlLilDDi~~~~~~~-------~~~~~l~~l~n~~~--~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNE-------EWELAIFDLFNRIK--EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred cCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHH--HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCC
Confidence 45799999999986532 11222333333332 1223455666667777765 899994445689999999
Q ss_pred CHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 115 DYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
+.++|.+|++...... ..++.-++.|++..+ =+.+.+..+++.--..+..++ +.||...+.+++
T Consensus 162 d~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~-~d~r~l~~~l~~l~~~~~~~~-~~it~~~v~~~L 227 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRGIELSDEVANFLLKRLD-RDMHTLFDALDLLDKASLQAQ-RKLTIPFVKEIL 227 (229)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHh
Confidence 9999999999877533 334444667788766 366777777775433333334 468988887765
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.7e-05 Score=75.41 Aligned_cols=148 Identities=22% Similarity=0.230 Sum_probs=97.8
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..|+.+++++- .+...+|++.+.+. ....-|++|||+|.|.. ...|.||+.|+. ..
T Consensus 88 ~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~------------~a~NALLKtLEE--Pp 147 (647)
T PRK07994 88 VDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEE--PP 147 (647)
T ss_pred CCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH------------HHHHHHHHHHHc--CC
Confidence 35666666431 12334555554443 22346999999999832 356889998885 45
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.++.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-...++..+... ...+..+..+++.+.| +.++.-+++..
T Consensus 148 ~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldq 223 (647)
T PRK07994 148 EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQ 223 (647)
T ss_pred CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 678888889999999999999 86 689999999999998888877432 2333346667776554 56666666665
Q ss_pred HHHHHHHcCCCCCcHHHHHHHH
Q psy10044 159 AALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~al 180 (235)
|... +...|+.+++...+
T Consensus 224 aia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 224 AIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHh----cCCCcCHHHHHHHH
Confidence 5422 22335655555433
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1e-05 Score=76.50 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=91.9
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..++.+++++- .+...++++.+.+. ...-.|++|||+|.|.. ...|.||+.|+. ..
T Consensus 93 pDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------~AaNALLKTLEE--PP 152 (700)
T PRK12323 93 VDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------HAFNAMLKTLEE--PP 152 (700)
T ss_pred CcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH------------HHHHHHHHhhcc--CC
Confidence 35666666431 12344555555543 23347999999999832 356889998885 45
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.++++|.+||.++.|.+.+++ |+ ..+.|..++.++-.+.++..+... ...+..+..+++.+.| +.++.-+++..
T Consensus 153 ~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQ 228 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQ 228 (700)
T ss_pred CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 678999999999999999999 88 589999999999888888877542 2222235666776554 66677777766
Q ss_pred HH
Q psy10044 159 AA 160 (235)
Q Consensus 159 A~ 160 (235)
+.
T Consensus 229 ai 230 (700)
T PRK12323 229 AI 230 (700)
T ss_pred HH
Confidence 54
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=7.5e-06 Score=73.79 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...||++++.+... ...|++|||+|.+... ..|.||+.|+.- ..++++|.+|+.++.|+|++
T Consensus 99 i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~------------aanaLLk~LEep--~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 99 VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER------------AANALLKAVEEP--PPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH------------HHHHHHHHhhcC--CCCCeEEEEECChHHChHHH
Confidence 34588888877542 2369999999999431 347788888753 33455555666699999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCHHHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENM 155 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~~di~~l 155 (235)
++ |+ ..+.|++|+.++....+..... ........++..+.|..+..+.-+
T Consensus 165 rS--Rc-~~i~f~~~~~~~i~~~L~~~~~---~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 165 RS--RC-RHVALRTPSVEAVAEVLVRRDG---VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred Hh--hC-eEEECCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99 87 5899999999988777763221 122335678888888877665443
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.3e-05 Score=73.84 Aligned_cols=149 Identities=17% Similarity=0.131 Sum_probs=98.4
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
.++.++++.- .+...++.+.+.+... ...|++|||+|.|.. ...+.|+..++.. ..
T Consensus 87 dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a~~~LLk~LE~p--~~ 146 (472)
T PRK14962 87 DVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------EAFNALLKTLEEP--PS 146 (472)
T ss_pred ccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------HHHHHHHHHHHhC--CC
Confidence 4666665421 1234566666665432 246999999999842 2356777777743 45
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+++|++|+.+..+++++++ |+. .++|.+|+.++...+++..+... ..++..++.|++.+.| ..+++-+.+..+
T Consensus 147 ~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l 222 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQV 222 (472)
T ss_pred cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 67788888888999999999 884 89999999999999998877542 2233346777876543 444554555443
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDK 182 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~ 182 (235)
... .+ ..||.+++.+++..
T Consensus 223 ~~~---~~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 223 WKF---SE-GKITLETVHEALGL 241 (472)
T ss_pred HHh---cC-CCCCHHHHHHHHcC
Confidence 321 12 24899999887643
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.1e-05 Score=75.46 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=92.3
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
.++.++.++ ..+...++++.+.+.. ....|++|||+|.|.. ...|.||+.|+.. ..
T Consensus 89 DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~A~NALLKtLEEP--P~ 148 (830)
T PRK07003 89 DYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------HAFNAMLKTLEEP--PP 148 (830)
T ss_pred eEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------HHHHHHHHHHHhc--CC
Confidence 456665542 1223456666666542 2347999999999832 2467788888853 45
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
++.+|.+||.++.|.+.|++ |+ ..+.|..++.++-.+.|+..+... ..++..+..|++.+.|- .++.-+++..+
T Consensus 149 ~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdALsLLdQA 224 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MRDALSLTDQA 224 (830)
T ss_pred CeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 78999999999999999999 88 589999999999999998887543 23344477788877764 45665665555
Q ss_pred H
Q psy10044 160 A 160 (235)
Q Consensus 160 ~ 160 (235)
.
T Consensus 225 i 225 (830)
T PRK07003 225 I 225 (830)
T ss_pred H
Confidence 4
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.7e-05 Score=71.47 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...+|++.+.+. .....|++|||+|.+.. ...+.||..|+. ...++++|++|+.++.|++++
T Consensus 103 Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~------------~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 103 IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD------------QSFNALLKTLEE--PPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH------------HHHHHHHHHhhc--CCCceEEEeecCChhhccHHH
Confidence 345666655554 22346999999999842 356888888874 456889999999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
++ |+. .+.|..++.++-...++..+... ..++..+..+++.+.| +.+|.-++++.+... ....||.+++.
T Consensus 169 ~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~~----~~~~it~~~V~ 240 (484)
T PRK14956 169 LS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIVF----TDSKLTGVKIR 240 (484)
T ss_pred Hh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHHh----CCCCcCHHHHH
Confidence 99 885 68888888888888888776543 2233447777877665 466666666654422 12347777775
Q ss_pred HHH
Q psy10044 178 YAR 180 (235)
Q Consensus 178 ~al 180 (235)
+.+
T Consensus 241 ~~l 243 (484)
T PRK14956 241 KMI 243 (484)
T ss_pred HHh
Confidence 544
No 86
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2e-05 Score=74.55 Aligned_cols=148 Identities=19% Similarity=0.183 Sum_probs=102.7
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+..++.+++++- .+...+|++.+.+.. ....|++|||+|.|-. ...+.|+..++..
T Consensus 86 hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------~A~NALLKtLEEP-- 145 (702)
T PRK14960 86 FIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------HSFNALLKTLEEP-- 145 (702)
T ss_pred CCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------HHHHHHHHHHhcC--
Confidence 346677776532 123456666665532 2346999999998832 2467788888853
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
...+.+|.+|+.+..+++.+++ |+ ..++|..++.++-...++..+.+. ...+..+..+++.+.| +.+++.+++.
T Consensus 146 P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLD 221 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTD 221 (702)
T ss_pred CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4567888888889999999998 88 489999999999888888887553 2333347778887665 7777777776
Q ss_pred HHHHHHHHcCCCCCcHHHHHHH
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~a 179 (235)
.+... +...|+.+++...
T Consensus 222 QaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 222 QAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred HHHHh----cCCCcCHHHHHHH
Confidence 65432 3455777777664
No 87
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.25 E-value=1.6e-05 Score=71.99 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=102.3
Q ss_pred CCCeeEEeccchhhh-hhccHHHH-HHHHHHHHH----hhCCCeEEEEccccccccccCCCCC--CccHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFDE-VLVGQGAR-RVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~-~~~g~~~~-~i~~~F~~A----~~~~P~Il~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~l 74 (235)
.+.||+.++++.+.. .|+|+... .+..++..+ .+..++||||||+|.+..++.+... +-....+.+.||..|
T Consensus 132 l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 132 LDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred hCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence 478999999998864 68887544 456655432 2446899999999999887433211 111234778888888
Q ss_pred cCCC-----------CCCCeEEEEecCCCC--------------------------------------------------
Q psy10044 75 DGFH-----------QNEGVVVLGATNRRD-------------------------------------------------- 93 (235)
Q Consensus 75 d~~~-----------~~~~v~vIatTn~~~-------------------------------------------------- 93 (235)
++-. ...+.++|.|+|-..
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~ 291 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI 291 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence 7531 011245555555400
Q ss_pred --cccHHhhCCCcccEEEEcCCCCHHHHHHHHHH----HhcCc----cC-------CCCCHHHHHhc--CCCCCHHHHHH
Q psy10044 94 --DLDKALLRPGRFDIEVNVPPPDYTGRREILDL----YLGKI----VS-------KNIDVDTLARG--TTGFTGADLEN 154 (235)
Q Consensus 94 --~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~----~l~~~----~~-------~~~~l~~la~~--t~G~s~~di~~ 154 (235)
-+.|+++- |+|..+.|.+.+.++..+|+.. .++++ .. ++--+..|++. ..++-.+-|+.
T Consensus 292 ~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrr 369 (412)
T PRK05342 292 KFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRS 369 (412)
T ss_pred HHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHH
Confidence 03455555 9999999999999999999973 33221 11 12225567764 45677788888
Q ss_pred HHHHHHHHHHH
Q psy10044 155 MVNQAALRAAI 165 (235)
Q Consensus 155 l~~~A~~~a~~ 165 (235)
++++.....+.
T Consensus 370 iie~~l~~~~~ 380 (412)
T PRK05342 370 ILEEILLDVMF 380 (412)
T ss_pred HHHHHhHHHHH
Confidence 88876655443
No 88
>PRK04195 replication factor C large subunit; Provisional
Probab=98.23 E-value=2.5e-05 Score=72.36 Aligned_cols=149 Identities=11% Similarity=0.136 Sum_probs=95.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhh------CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD------RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 77 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~------~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~ 77 (235)
|.+++.+++++..+. ..++.+...+.. ..+.+|+|||+|.+..+.+ ...++.++..++.
T Consensus 64 ~~~~ielnasd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~aL~~~l~~- 128 (482)
T PRK04195 64 GWEVIELNASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGARAILELIKK- 128 (482)
T ss_pred CCCEEEEcccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHHHHHHHHHc-
Confidence 456788888765432 234444333322 2468999999999865321 1234556666652
Q ss_pred CCCCCeEEEEecCCCCcccH-HhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHH
Q psy10044 78 HQNEGVVVLGATNRRDDLDK-ALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLEN 154 (235)
Q Consensus 78 ~~~~~v~vIatTn~~~~ld~-al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~ 154 (235)
.+..+|.++|.+..+++ .+++ |+ ..|+|+.|+..+...+++..+... ..++..+..|++.+ ++|+..
T Consensus 129 ---~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ 198 (482)
T PRK04195 129 ---AKQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRS 198 (482)
T ss_pred ---CCCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHH
Confidence 23356678899998888 5655 44 589999999999999999888543 23333477777754 458888
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 155 MVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 155 l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
+++.... ...+...++.+++...
T Consensus 199 ain~Lq~--~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 199 AINDLQA--IAEGYGKLTLEDVKTL 221 (482)
T ss_pred HHHHHHH--HhcCCCCCcHHHHHHh
Confidence 8776544 2234455777666543
No 89
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.23 E-value=3.1e-05 Score=67.85 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=78.7
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHH
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTG 118 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~ 118 (235)
+.+|+|||+|.+... ..+.|...++.... ...+|.+|+.+..+.+.|.+ |+ ..+++.+|+.++
T Consensus 126 ~~vlilDe~~~l~~~------------~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~ 188 (337)
T PRK12402 126 YKTILLDNAEALRED------------AQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDE 188 (337)
T ss_pred CcEEEEeCcccCCHH------------HHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHH
Confidence 469999999987321 12344444554322 23455566677788888888 76 478999999999
Q ss_pred HHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q psy10044 119 RREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDK 182 (235)
Q Consensus 119 R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~ 182 (235)
...+++..+.+. ..++..+..+++.+ ++|+..+++.....+ . +...||.+++.+++..
T Consensus 189 ~~~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l~~~~-~-~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 189 LVDVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTLQTAA-L-AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHH-H-cCCCCCHHHHHHHhCC
Confidence 999999887653 22333466777755 455666665544333 2 2236898888876553
No 90
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.22 E-value=5.2e-05 Score=68.18 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=109.4
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeE
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 84 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 84 (235)
+-+++++..+|...++-....+=-+-|+.-. +-.+++|||++.+.++... . .+|...+..+..+++-+
T Consensus 144 a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~------q----eefFh~FN~l~~~~kqI 211 (408)
T COG0593 144 ARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT------Q----EEFFHTFNALLENGKQI 211 (408)
T ss_pred ceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH------H----HHHHHHHHHHHhcCCEE
Confidence 3578888888887766654443333454444 3379999999999875422 1 22222233332344456
Q ss_pred EEEecCCCCcc---cHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 85 VLGATNRRDDL---DKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 85 vIatTn~~~~l---d~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
|+.+-..|..+ .|.|++ ||. ..+++.+|+.+.|..||+...... ..++.-..-+|+... =+.+++..+++
T Consensus 212 vltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~ 288 (408)
T COG0593 212 VLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALN 288 (408)
T ss_pred EEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHH
Confidence 66665666655 599999 985 678889999999999999965443 333333566666654 47788888888
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
.....+...++ .||.+.+.+++......
T Consensus 289 ~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 289 RLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 77766666555 57777777777776554
No 91
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.9e-05 Score=73.50 Aligned_cols=148 Identities=19% Similarity=0.203 Sum_probs=101.3
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..++.+++++ ..+...+|++.+.+.. ..-.|++|||+|.+.. ...|.||..|+.. .
T Consensus 88 ~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------~a~naLLk~LEep--p 147 (509)
T PRK14958 88 PDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------HSFNALLKTLEEP--P 147 (509)
T ss_pred ceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------HHHHHHHHHHhcc--C
Confidence 3477777653 1223446666665532 2236999999999843 2467888888853 4
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.++.+|.+|+.+..+.+.+++ |+ ..++|..++.++-...++..+... ...+..+..+++.+.| +.+++.+++..
T Consensus 148 ~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq 223 (509)
T PRK14958 148 SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQ 223 (509)
T ss_pred CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 567788888889999999998 87 478899888888777777777543 2233346677877765 78888888877
Q ss_pred HHHHHHHcCCCCCcHHHHHHHH
Q psy10044 159 AALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~al 180 (235)
+... +...||.+++...+
T Consensus 224 ~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 224 SIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHhc----CCCCcCHHHHHHHH
Confidence 6432 34557777777654
No 92
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.20 E-value=2e-05 Score=66.90 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=90.1
Q ss_pred HhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---cc----cHHhhCCCccc
Q psy10044 34 AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD---DL----DKALLRPGRFD 106 (235)
Q Consensus 34 A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~---~l----d~al~rpgRf~ 106 (235)
.....+.+|+|||+|.+... ....+..+... .. .....+.++ .|..++ .+ ...+.+ |+.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~---------~~~~l~~l~~~-~~-~~~~~~~vv-l~g~~~~~~~l~~~~~~~l~~--r~~ 184 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPE---------LLEELRMLSNF-QT-DNAKLLQIF-LVGQPEFRETLQSPQLQQLRQ--RII 184 (269)
T ss_pred HhCCCCeEEEEECcccCCHH---------HHHHHHHHhCc-cc-CCCCeEEEE-EcCCHHHHHHHcCchhHHHHh--hee
Confidence 34566789999999987321 11122222211 11 112222222 223332 11 123555 888
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCc------cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 107 IEVNVPPPDYTGRREILDLYLGKI------VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~~~l~~~------~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
..+++++.+.++-.+++...+... ...+..++.+++.|.|.. ..|..+|+.+...|..++...|+.+++++++
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVI 263 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 889999999999999999887543 112234777899999985 5599999999999999999999999999998
Q ss_pred HHh
Q psy10044 181 DKV 183 (235)
Q Consensus 181 ~~~ 183 (235)
...
T Consensus 264 ~~~ 266 (269)
T TIGR03015 264 AEI 266 (269)
T ss_pred HHh
Confidence 875
No 93
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.19 E-value=5.3e-06 Score=74.73 Aligned_cols=84 Identities=25% Similarity=0.329 Sum_probs=63.8
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC--------CCCCCeEEEEec----CCCCcccHHhhCCCccc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF--------HQNEGVVVLGAT----NRRDDLDKALLRPGRFD 106 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~--------~~~~~v~vIatT----n~~~~ld~al~rpgRf~ 106 (235)
-.||||||||.++.+.++.+.+-....+-..||..++|- -+..++++|++- ..|++|-|.|.- ||.
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~P 327 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFP 327 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccc
Confidence 359999999999987543322223345677888888874 234678888774 357788889987 999
Q ss_pred EEEEcCCCCHHHHHHHHH
Q psy10044 107 IEVNVPPPDYTGRREILD 124 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~ 124 (235)
.++++..++.++-.+||.
T Consensus 328 i~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 328 IRVELDALTEEDFVRILT 345 (443)
T ss_pred eEEECCCCCHHHHHHHhc
Confidence 999999999999888873
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=4.3e-05 Score=74.72 Aligned_cols=106 Identities=18% Similarity=0.076 Sum_probs=76.7
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
....|+||||+|.|.. ...|.||+.|+.. ...+++|.+|+.++.|.+.|++ |+ .+++|..++.
T Consensus 119 ~~~KV~IIDEad~lt~------------~a~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~ 181 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP------------QGFNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPP 181 (824)
T ss_pred CCceEEEEechhhcCH------------HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCH
Confidence 3457999999999843 3467888888854 4577888888889999999998 87 5889999999
Q ss_pred HHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 117 TGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 117 ~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
++-..+|+..+.+. ..++..+..+++.+.| +.+++.++++...
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 88888888877543 2222235556666655 6666666666533
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.16 E-value=8e-05 Score=71.96 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=93.6
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhh-----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD-----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~-----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
+.+|+.++++. .+.+.++++++.+.. ....+|||||+|.+... ..+.|+..++
T Consensus 77 ~~~f~~lna~~-------~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~------------qQdaLL~~lE--- 134 (725)
T PRK13341 77 RAHFSSLNAVL-------AGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA------------QQDALLPWVE--- 134 (725)
T ss_pred cCcceeehhhh-------hhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH------------HHHHHHHHhc---
Confidence 35566666642 122344555555421 24579999999998431 1234555554
Q ss_pred CCCCeEEEEecC--CCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc---------cCCCCCHHHHHhcCCCC
Q psy10044 79 QNEGVVVLGATN--RRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI---------VSKNIDVDTLARGTTGF 147 (235)
Q Consensus 79 ~~~~v~vIatTn--~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~~~~l~~la~~t~G~ 147 (235)
+..+++|++|+ ....+++++++ |. ..+.|++++.+++..+++..+... ..++.-++.|++.+.|
T Consensus 135 -~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G- 209 (725)
T PRK13341 135 -NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG- 209 (725)
T ss_pred -CceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-
Confidence 34577777663 33578999998 65 468999999999999999988621 1122225667776533
Q ss_pred CHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHh
Q psy10044 148 TGADLENMVNQAALRAAIDGV--PHVTMKYLEYARDKV 183 (235)
Q Consensus 148 s~~di~~l~~~A~~~a~~~~~--~~i~~~~~~~al~~~ 183 (235)
..+++.++++.+...+...+. ..|+.+++++++.+.
T Consensus 210 D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 210 DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 456666666665533222222 237888888887764
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.3e-05 Score=71.27 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=106.7
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
++..++.+++++- .+...+|++.+.+... ..-|++|||+|.+.. ...|.|+..++..
T Consensus 83 ~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~NaLLK~LEeP- 143 (491)
T PRK14964 83 NHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAFNALLKTLEEP- 143 (491)
T ss_pred CCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHHHHHHHHHhCC-
Confidence 3566788887532 2345677777777532 246999999988732 2567888888853
Q ss_pred CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 79 ~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
...+.+|.+|+.++.+.+.+++ |+ ..++|..++.++....++..+.+. ..++..+..+++.+.| +.+++.+++
T Consensus 144 -p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslL 218 (491)
T PRK14964 144 -APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLL 218 (491)
T ss_pred -CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 4567888888889999999999 87 478999999999998888887553 2333447778887765 888888888
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
+.+...+ ...||.+++.+.
T Consensus 219 dqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 219 EQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred HHHHHhc----CCCCCHHHHHHH
Confidence 7765432 235777777664
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5e-05 Score=71.98 Aligned_cols=134 Identities=21% Similarity=0.233 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhCCC-----eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHH
Q psy10044 24 ARRVRDLFKAAKDRTP-----CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKA 98 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P-----~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~a 98 (235)
...+|++.+.+.. .| -|++|||+|.+.. ...|.||..++. ....+.+|.+|+.+..+.+.
T Consensus 106 Vd~iReli~~~~~-~p~~g~~KV~IIDEvh~Ls~------------~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 106 VDEVQQLLEQAVY-KPVQGRFKVFMIDEVHMLTN------------TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred HHHHHHHHHHHHh-CcccCCceEEEEEChhhCCH------------HHHHHHHHhccc--CCCCeEEEEEECCchhhhHH
Confidence 3456777766542 33 5999999999843 236778888875 34567788888889999999
Q ss_pred hhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Q psy10044 99 LLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYL 176 (235)
Q Consensus 99 l~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~ 176 (235)
+++ |+ ..++|..++.++....++..+.+. ..++..+..|++.+.| +.+++.+++..+... +...||.+++
T Consensus 171 IlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V 242 (618)
T PRK14951 171 VLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAV 242 (618)
T ss_pred HHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHH
Confidence 998 87 589999999999888888877543 2233346778887775 777777777655533 3345776666
Q ss_pred HHHH
Q psy10044 177 EYAR 180 (235)
Q Consensus 177 ~~al 180 (235)
.+.+
T Consensus 243 ~~~L 246 (618)
T PRK14951 243 RQML 246 (618)
T ss_pred HHHH
Confidence 5543
No 98
>PRK04132 replication factor C small subunit; Provisional
Probab=98.14 E-value=5e-05 Score=74.10 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=87.0
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC------CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT------PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 77 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~------P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~ 77 (235)
+.+++.+++++..+ ...|+++...+.... .-|++|||+|.+-. ...+.|+..|+..
T Consensus 596 ~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~------------~AQnALLk~lEep 657 (846)
T PRK04132 596 RHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------DAQQALRRTMEMF 657 (846)
T ss_pred cCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH------------HHHHHHHHHhhCC
Confidence 45799999988543 245666655543332 25999999999943 2357788888853
Q ss_pred CCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC--ccCCCCCHHHHHhcCCC
Q psy10044 78 HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK--IVSKNIDVDTLARGTTG 146 (235)
Q Consensus 78 ~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~--~~~~~~~l~~la~~t~G 146 (235)
..++.+|++||.+..+.++|++ |+ ..+.|++|+.++-...++..+.+ ...++..+..+++.+.|
T Consensus 658 --~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 658 --SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred --CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 4577899999999999999999 87 58999999998888888877653 22233456777775554
No 99
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.13 E-value=4.4e-05 Score=69.06 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=103.6
Q ss_pred CCCeeEEeccchhhh-hhccHH-HHHHHHHHHHH----hhCCCeEEEEccccccccccCCCCCCc--cHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFDE-VLVGQG-ARRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~-~~~g~~-~~~i~~~F~~A----~~~~P~Il~iDeiD~l~~~r~~~~~~~--~~~~~~~~ll~~l 74 (235)
.+.||..++++.+.. .|+|.. +..+..++..+ ....|+||||||+|.+..++.+..... .-..+.+.||..|
T Consensus 140 l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iL 219 (413)
T TIGR00382 140 LNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKII 219 (413)
T ss_pred cCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHh
Confidence 468999999988763 588875 45555555433 234688999999999998654322111 1124677788888
Q ss_pred cCCCC-----------CCCeEEEEecCCC---------------------------C-----------------------
Q psy10044 75 DGFHQ-----------NEGVVVLGATNRR---------------------------D----------------------- 93 (235)
Q Consensus 75 d~~~~-----------~~~v~vIatTn~~---------------------------~----------------------- 93 (235)
+|... ..+.++|.|+|-. +
T Consensus 220 eG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~ 299 (413)
T TIGR00382 220 EGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKF 299 (413)
T ss_pred hccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 75421 1246677777750 0
Q ss_pred cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHH----hcCc----cCC-------CCCHHHHHhc--CCCCCHHHHHHHH
Q psy10044 94 DLDKALLRPGRFDIEVNVPPPDYTGRREILDLY----LGKI----VSK-------NIDVDTLARG--TTGFTGADLENMV 156 (235)
Q Consensus 94 ~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~----l~~~----~~~-------~~~l~~la~~--t~G~s~~di~~l~ 156 (235)
.+.|+|+- |+|..+.|.+.+.++..+|+..- ++.+ ... +.-++.|++. ..++-.+-|+.++
T Consensus 300 g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~ii 377 (413)
T TIGR00382 300 GLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIV 377 (413)
T ss_pred hhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHH
Confidence 03466665 99999999999999999998763 2211 111 1225567765 3567778888888
Q ss_pred HHHHHHHHH
Q psy10044 157 NQAALRAAI 165 (235)
Q Consensus 157 ~~A~~~a~~ 165 (235)
++.....+.
T Consensus 378 e~~l~~~m~ 386 (413)
T TIGR00382 378 EGLLLDVMF 386 (413)
T ss_pred HHhhHHHHh
Confidence 877665543
No 100
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=9.8e-05 Score=65.98 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=96.6
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CcccHHhhCCCcc-cEEEEcC
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR---DDLDKALLRPGRF-DIEVNVP 112 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~---~~ld~al~rpgRf-~~~i~i~ 112 (235)
....||.+||+|.|..+.. .++-.|+..-+.. ..+|.+|+.+|.. +.+||.+.+ +| ...|.|+
T Consensus 122 ~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~ 188 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFP 188 (366)
T ss_pred CCeEEEEEcchhhhccccc---------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeC
Confidence 4578999999999987543 2444444443332 5678999999976 478999998 65 3568999
Q ss_pred CCCHHHHHHHHHHHhcCcc-CCC--CCHHHH----HhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 113 PPDYTGRREILDLYLGKIV-SKN--IDVDTL----ARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 113 ~P~~~~R~~il~~~l~~~~-~~~--~~l~~l----a~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
+.+.+|-..|++....... ... -+.-++ +....| ..+---.+|+.|+..|-+++.+.++.+++..|.+...
T Consensus 189 pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 189 PYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh
Confidence 9999999999998886531 111 122222 333334 5555577889999999999999999999999955543
No 101
>KOG2028|consensus
Probab=98.11 E-value=9.5e-05 Score=65.19 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=109.6
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHhh-----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAKD-----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~-----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.|+++++. ..+.+.+|.+|++|+. ....|||||||+.|-...+ ..||-.++ +
T Consensus 192 rfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ------------D~fLP~VE----~ 248 (554)
T KOG2028|consen 192 RFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ------------DTFLPHVE----N 248 (554)
T ss_pred EEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh------------hcccceec----c
Confidence 36666653 3445789999999975 3368999999999854332 22443333 5
Q ss_pred CCeEEEEec--CCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhc---Cc-------cCCC-----CCHHHHHhc
Q psy10044 81 EGVVVLGAT--NRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG---KI-------VSKN-----IDVDTLARG 143 (235)
Q Consensus 81 ~~v~vIatT--n~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~---~~-------~~~~-----~~l~~la~~ 143 (235)
..|++||+| |..-.|..||++ |+ +++.+...+.+.-..||..-.. +- .... --++.++..
T Consensus 249 G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 678999877 445589999999 66 3566677777777778877443 21 1111 126667888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC---CCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHH
Q psy10044 144 TTGFTGADLENMVNQAALRAAIDG---VPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEG 207 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~~~~---~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~ 207 (235)
+.|=.-+-|-.+-..+.+.+.+.+ +..++.+|+.+++++--.- -.+..++.-..+.|+|..
T Consensus 326 sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~---YDr~Ge~HYntISA~HKS 389 (554)
T KOG2028|consen 326 SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHIL---YDRAGEEHYNTISALHKS 389 (554)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccce---ecccchhHHHHHHHHHHh
Confidence 887666666555444444445554 3468999999988765321 112333444567777753
No 102
>PRK08727 hypothetical protein; Validated
Probab=98.11 E-value=3.8e-05 Score=64.39 Aligned_cols=139 Identities=18% Similarity=0.254 Sum_probs=84.0
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEec-CCCCcc---cHHhhCC
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGAT-NRRDDL---DKALLRP 102 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatT-n~~~~l---d~al~rp 102 (235)
+.++++... +..+|+|||+|.+..+.. ....+-.+++... .+ +.-+|.|+ +.|..+ +|+|++
T Consensus 84 ~~~~~~~l~--~~dlLiIDDi~~l~~~~~-------~~~~lf~l~n~~~---~~-~~~vI~ts~~~p~~l~~~~~dL~S- 149 (233)
T PRK08727 84 LRDALEALE--GRSLVALDGLESIAGQRE-------DEVALFDFHNRAR---AA-GITLLYTARQMPDGLALVLPDLRS- 149 (233)
T ss_pred HHHHHHHHh--cCCEEEEeCcccccCChH-------HHHHHHHHHHHHH---Hc-CCeEEEECCCChhhhhhhhHHHHH-
Confidence 334444443 347999999998865331 1222223444432 12 23344444 456655 799999
Q ss_pred Ccc--cEEEEcCCCCHHHHHHHHHHHhcC--ccCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy10044 103 GRF--DIEVNVPPPDYTGRREILDLYLGK--IVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178 (235)
Q Consensus 103 gRf--~~~i~i~~P~~~~R~~il~~~l~~--~~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~ 178 (235)
|| ...+++++|+.++|.++++..... +..++..++.|++.++| +.+.+.++++.....+...+ +.||...+.+
T Consensus 150 -Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~ 226 (233)
T PRK08727 150 -RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRR 226 (233)
T ss_pred -HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHH
Confidence 97 568899999999999999986543 33344447778887652 33333333554433344334 4689888888
Q ss_pred HHHH
Q psy10044 179 ARDK 182 (235)
Q Consensus 179 al~~ 182 (235)
.+..
T Consensus 227 ~l~~ 230 (233)
T PRK08727 227 VLEE 230 (233)
T ss_pred HHhh
Confidence 7754
No 103
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=8.2e-05 Score=68.90 Aligned_cols=134 Identities=22% Similarity=0.235 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..++.+.+.+.. ....|++|||+|.+.. ...+.|+..++.. ...+++|.+|+.++.+++++.
T Consensus 102 d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------~a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~ 167 (486)
T PRK14953 102 DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------EAFNALLKTLEEP--PPRTIFILCTTEYDKIPPTIL 167 (486)
T ss_pred HHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------HHHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHH
Confidence 445666555543 2347999999998742 2356778887753 345566667777889999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~ 178 (235)
+ |+. .+.|.+|+.++....++..+... ..++..+..++..+.| +.+++.++++.+... +...+|.+++.+
T Consensus 168 S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~ 239 (486)
T PRK14953 168 S--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTY----GEGKVTIKVVEE 239 (486)
T ss_pred H--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 8 775 79999999999999999887654 2222335667766553 566777777666532 344577777776
Q ss_pred HH
Q psy10044 179 AR 180 (235)
Q Consensus 179 al 180 (235)
++
T Consensus 240 ~l 241 (486)
T PRK14953 240 FL 241 (486)
T ss_pred Hh
Confidence 54
No 104
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.08 E-value=0.00015 Score=61.82 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=75.0
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-------C-------CCCCeEEEEecCCC-----CcccHHh
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-------H-------QNEGVVVLGATNRR-----DDLDKAL 99 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-------~-------~~~~v~vIatTn~~-----~~ld~al 99 (235)
+.+|+|||+|.+-. . +.+.|+..|+.- . ...+..+|+|+|.. ..+++++
T Consensus 106 g~~lllDEi~r~~~---------~---~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL 173 (262)
T TIGR02640 106 GFTLVYDEFTRSKP---------E---TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDAL 173 (262)
T ss_pred CCEEEEcchhhCCH---------H---HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHH
Confidence 47999999998632 1 333444444321 1 12356799999976 3679999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHH---HHhc---CC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDT---LARG---TT-GFTGADLENMVNQAALRAAIDGVPHVT 172 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~---la~~---t~-G~s~~di~~l~~~A~~~a~~~~~~~i~ 172 (235)
++ || ..+.++.|+.++-.+|++.+.. . .+...+. ++.. .. -..++ ++..+.-|...+.......++
T Consensus 174 ~~--R~-~~i~i~~P~~~~e~~Il~~~~~-~--~~~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~~~~~~ 246 (262)
T TIGR02640 174 LD--RL-ITIFMDYPDIDTETAILRAKTD-V--AEDSAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDIPVDVD 246 (262)
T ss_pred Hh--hc-EEEECCCCCHHHHHHHHHHhhC-C--CHHHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCCCCCCC
Confidence 99 99 5899999999999999998752 1 1111111 1111 11 11222 444444344344445566677
Q ss_pred HHHHHHHHHHh
Q psy10044 173 MKYLEYARDKV 183 (235)
Q Consensus 173 ~~~~~~al~~~ 183 (235)
.+||.+....+
T Consensus 247 ~~~~~~~~~~~ 257 (262)
T TIGR02640 247 DEDFVDLCIDI 257 (262)
T ss_pred cHHHHHHHHHH
Confidence 78887766554
No 105
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.07 E-value=8e-05 Score=61.89 Aligned_cols=128 Identities=12% Similarity=0.049 Sum_probs=79.8
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---cccHHhhCCCcc--cEEEEcC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD---DLDKALLRPGRF--DIEVNVP 112 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~---~ld~al~rpgRf--~~~i~i~ 112 (235)
.+.+|+|||+|.+... .. ..+...++....+...++|.+++.+. .+.+.+.+ || ...++++
T Consensus 90 ~~~~liiDdi~~l~~~---------~~---~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~ 155 (227)
T PRK08903 90 EAELYAVDDVERLDDA---------QQ---IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK 155 (227)
T ss_pred cCCEEEEeChhhcCch---------HH---HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec
Confidence 4579999999987321 12 22333333332334433444444322 35678887 77 4799999
Q ss_pred CCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 113 PPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 113 ~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+|+.+++..+++.+.... ..++.-++.|++. -+=+.+++.++++.-...+.. .+..||...+.+++.
T Consensus 156 pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 156 PLSDADKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHh
Confidence 999999999998876543 2233336667773 345778888888874434434 346799888888764
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=5.7e-05 Score=71.38 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
...||+|||+|.+-. ...+.|+..|+.. ..++++|++||.++.+.+.+++ |+. .++|+.++.+
T Consensus 119 ~~kVIIIDEad~Lt~------------~a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~ 181 (624)
T PRK14959 119 RYKVFIIDEAHMLTR------------EAFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEA 181 (624)
T ss_pred CceEEEEEChHhCCH------------HHHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHH
Confidence 357999999999842 2457788888753 3567888899999999999998 874 7899999999
Q ss_pred HHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 118 GRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 118 ~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
+-..+++..+.+. ..++..+..+++.+. -+.+++.++++.+. ..+...|+.+++..++
T Consensus 182 eL~~~L~~il~~egi~id~eal~lIA~~s~-GdlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 182 GLEAHLTKVLGREGVDYDPAAVRLIARRAA-GSVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 9998888876543 123333566676554 33444444444332 2244467777766554
No 107
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.06 E-value=0.00012 Score=64.73 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=92.1
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC---------C--CCCCCeEEEEecCCCC-cccHHhhCCCccc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG---------F--HQNEGVVVLGATNRRD-DLDKALLRPGRFD 106 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~---------~--~~~~~v~vIatTn~~~-~ld~al~rpgRf~ 106 (235)
..+||+||++.+-. .+.+.++..|+. . ..+.++++|+|+|-.+ .++++++. ||.
T Consensus 132 ~GvL~lDEi~~L~~------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~ 197 (337)
T TIGR02030 132 RGILYIDEVNLLED------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFG 197 (337)
T ss_pred CCEEEecChHhCCH------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcc
Confidence 47999999998732 233444544432 1 1234688888888655 69999999 999
Q ss_pred EEEEcCCCCH-HHHHHHHHHHhcCc----c----------------------CCCCC--------HHHHHhcCCCCCHHH
Q psy10044 107 IEVNVPPPDY-TGRREILDLYLGKI----V----------------------SKNID--------VDTLARGTTGFTGAD 151 (235)
Q Consensus 107 ~~i~i~~P~~-~~R~~il~~~l~~~----~----------------------~~~~~--------l~~la~~t~G~s~~d 151 (235)
.++.++.|.. ++|.+|++...... . ..++. +..++..+..-|++-
T Consensus 198 l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra 277 (337)
T TIGR02030 198 LHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRG 277 (337)
T ss_pred eEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcH
Confidence 9999999975 89999998743210 0 01111 223444454446677
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 152 LENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 152 i~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
-..+++-|...|..+|+..++.+|+..+..-+.
T Consensus 278 ~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 278 ELTLNRAAKALAAFEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 777888888899999999999999998876554
No 108
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.05 E-value=5.9e-05 Score=65.75 Aligned_cols=107 Identities=14% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHh-hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAK-DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~-~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+.+++.+++++ .. .......+........ ...+.+|+|||+|.+... .....+ ...++.. ..+
T Consensus 68 ~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~--------~~~~~L---~~~le~~--~~~ 131 (316)
T PHA02544 68 GAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA--------DAQRHL---RSFMEAY--SKN 131 (316)
T ss_pred CccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH--------HHHHHH---HHHHHhc--CCC
Confidence 45677777766 11 2222222322222111 124789999999987321 112223 3334433 345
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~ 129 (235)
+.+|.+||.++.+++++++ ||. .+.++.|+.+++..+++.++..
T Consensus 132 ~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 132 CSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred ceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 6788899999999999999 985 7899999999999888765543
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=9.5e-05 Score=62.02 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=93.0
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeE
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 84 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 84 (235)
...++++..+|.... ..+.+..+. ..+|+|||++.+.++.. .. ..|...++.+..+++.+
T Consensus 74 ~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~-------~~---~~Lf~l~n~~~~~g~~i 133 (234)
T PRK05642 74 EPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD-------WE---EALFHLFNRLRDSGRRL 133 (234)
T ss_pred CcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-------HH---HHHHHHHHHHHhcCCEE
Confidence 445666666665421 122333332 25899999998854321 11 23333344333445667
Q ss_pred EEEecCCCCcc---cHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 85 VLGATNRRDDL---DKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 85 vIatTn~~~~l---d~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
+++++..|..+ .|.|++ ||. ..+.+..|+.++|..+++...... ..++.-++.|++..+ -+.+.+..+++
T Consensus 134 lits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~ 210 (234)
T PRK05642 134 LLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT-RSMSALFDLLE 210 (234)
T ss_pred EEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 77777666543 689999 984 778889999999999999554332 223333566676655 47777777777
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~al 180 (235)
.--..+.. ....||...+.+++
T Consensus 211 ~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 211 RLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHH-cCCcCCHHHHHHHh
Confidence 65443333 33558887777765
No 110
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.0001 Score=70.29 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...|+++++.+.. ....|++|||+|.+. ....+.||..|+.. ...+.+|.+||.+..+.+.+
T Consensus 101 Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLEEP--p~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 101 IDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLEEP--PEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred HHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHHhC--CCCcEEEEEeCCccccchHH
Confidence 4567788776542 223699999998763 23467888888853 45678888889999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
++ |+ ..+.|+.++.++-...++..+.+. ..++..+..|++.+. -+.+++.+++..+... +...|+.+++.
T Consensus 167 rS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdAlnLLDqaia~----g~g~It~e~V~ 238 (709)
T PRK08691 167 LS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDALSLLDQAIAL----GSGKVAENDVR 238 (709)
T ss_pred HH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHHHHHHHHHHh----cCCCcCHHHHH
Confidence 97 87 478888999999888888887653 223334677787764 5788888888776543 23457777666
Q ss_pred HHH
Q psy10044 178 YAR 180 (235)
Q Consensus 178 ~al 180 (235)
..+
T Consensus 239 ~lL 241 (709)
T PRK08691 239 QMI 241 (709)
T ss_pred HHH
Confidence 654
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.99 E-value=2.5e-05 Score=70.46 Aligned_cols=84 Identities=25% Similarity=0.355 Sum_probs=63.2
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC--------CCCCeEEEEecC----CCCcccHHhhCCCccc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH--------QNEGVVVLGATN----RRDDLDKALLRPGRFD 106 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vIatTn----~~~~ld~al~rpgRf~ 106 (235)
-.||||||||.++.+..+.+.+-....+-+.||..++|-. ...++++|++-- .|++|=|.|.- ||.
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~P 325 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFP 325 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccc
Confidence 4699999999999875332222233456778888888742 346788888754 47777788876 999
Q ss_pred EEEEcCCCCHHHHHHHHH
Q psy10044 107 IEVNVPPPDYTGRREILD 124 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~ 124 (235)
..+++..++.++-..||.
T Consensus 326 i~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 326 IRVELQALTTDDFERILT 343 (441)
T ss_pred eEEECCCCCHHHHHHHhc
Confidence 999999999999888873
No 112
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00023 Score=66.47 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhCCC-----eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHH
Q psy10044 24 ARRVRDLFKAAKDRTP-----CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKA 98 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P-----~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~a 98 (235)
...|+++.+.+. ..| -|++|||+|.+.. ...+.||..|+.. ...+.+|.+|+.+..|.++
T Consensus 99 Id~IRelie~~~-~~P~~~~~KVvIIDEad~Lt~------------~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~t 163 (535)
T PRK08451 99 IDDIRELIEQTK-YKPSMARFKIFIIDEVHMLTK------------EAFNALLKTLEEP--PSYVKFILATTDPLKLPAT 163 (535)
T ss_pred HHHHHHHHHHHh-hCcccCCeEEEEEECcccCCH------------HHHHHHHHHHhhc--CCceEEEEEECChhhCchH
Confidence 355666665543 233 5999999988832 3567888888864 4456777778889999999
Q ss_pred hhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Q psy10044 99 LLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYL 176 (235)
Q Consensus 99 l~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~ 176 (235)
+++ |. ..++|.+++.++-...++..+... ..++..+..+++.+.| +.+++.+++..+...+ ...||.+++
T Consensus 164 I~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V 235 (535)
T PRK08451 164 ILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKV 235 (535)
T ss_pred HHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHH
Confidence 999 85 589999999988888888777543 2233346677777665 7888888887766443 234666666
Q ss_pred HHH
Q psy10044 177 EYA 179 (235)
Q Consensus 177 ~~a 179 (235)
...
T Consensus 236 ~~~ 238 (535)
T PRK08451 236 ADM 238 (535)
T ss_pred HHH
Confidence 543
No 113
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.98 E-value=0.00022 Score=62.89 Aligned_cols=129 Identities=20% Similarity=0.269 Sum_probs=88.3
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCCC-cccHHhhCCCcccE
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----------HQNEGVVVLGATNRRD-DLDKALLRPGRFDI 107 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vIatTn~~~-~ld~al~rpgRf~~ 107 (235)
.+||+||++.+-. .+.+.++..|+.- ....++++|+|+|..+ .++++++. ||..
T Consensus 130 GiL~lDEInrl~~------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~ 195 (334)
T PRK13407 130 GYLYIDEVNLLED------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGL 195 (334)
T ss_pred CeEEecChHhCCH------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcce
Confidence 5999999999732 2445555555421 1235689999988644 69999999 9999
Q ss_pred EEEcCCCCH-HHHHHHHHHHhcCcc-----------CC---------------CCC--------HHHHHhcCC-CCCHHH
Q psy10044 108 EVNVPPPDY-TGRREILDLYLGKIV-----------SK---------------NID--------VDTLARGTT-GFTGAD 151 (235)
Q Consensus 108 ~i~i~~P~~-~~R~~il~~~l~~~~-----------~~---------------~~~--------l~~la~~t~-G~s~~d 151 (235)
.+.+++|.. ++|.+|++....... .. .+. +.+++..+. .-.-++
T Consensus 196 ~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~ 275 (334)
T PRK13407 196 SVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGE 275 (334)
T ss_pred EEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHH
Confidence 999999866 999999987542110 00 010 222333332 224455
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 152 LENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 152 i~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
|. +++.|...|..+|+..++.+|+..+..-+
T Consensus 276 i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 276 LT-LLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred HH-HHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 55 88889999999999999999998776443
No 114
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.98 E-value=3.1e-05 Score=64.21 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=80.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC----
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH---- 78 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~---- 78 (235)
.+.+|..++++.+.. ...+..++...+ ...||||||||.|-. ..-..|+..|+...
T Consensus 74 ~~~~~~~~sg~~i~k------~~dl~~il~~l~--~~~ILFIDEIHRlnk------------~~qe~LlpamEd~~idii 133 (233)
T PF05496_consen 74 LGVNFKITSGPAIEK------AGDLAAILTNLK--EGDILFIDEIHRLNK------------AQQEILLPAMEDGKIDII 133 (233)
T ss_dssp CT--EEEEECCC--S------CHHHHHHHHT----TT-EEEECTCCC--H------------HHHHHHHHHHHCSEEEEE
T ss_pred cCCCeEeccchhhhh------HHHHHHHHHhcC--CCcEEEEechhhccH------------HHHHHHHHHhccCeEEEE
Confidence 467788888865432 233444444443 357999999999833 23344566665431
Q ss_pred ----CC--------CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcC
Q psy10044 79 ----QN--------EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGT 144 (235)
Q Consensus 79 ----~~--------~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t 144 (235)
.+ ++..+||||++...|.+.|+. ||.....+...+.++-..|++.....+ ..++.-..++|..+
T Consensus 134 iG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 134 IGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRS 211 (233)
T ss_dssp BSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT
T ss_pred eccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc
Confidence 11 358899999999999999999 999999999999999999998776544 12222366788877
Q ss_pred CCCCHHHHHHHHHH
Q psy10044 145 TGFTGADLENMVNQ 158 (235)
Q Consensus 145 ~G~s~~di~~l~~~ 158 (235)
.| ||+---+++++
T Consensus 212 rG-tPRiAnrll~r 224 (233)
T PF05496_consen 212 RG-TPRIANRLLRR 224 (233)
T ss_dssp TT-SHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHH
Confidence 75 56555555444
No 115
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00023 Score=66.19 Aligned_cols=148 Identities=21% Similarity=0.182 Sum_probs=97.0
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+..++.+++++- .+...++++.+.+.. ..+.|++|||+|.+. ....+.|+..++..
T Consensus 84 h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep-- 143 (504)
T PRK14963 84 HPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEP-- 143 (504)
T ss_pred CCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHHHHhC--
Confidence 345666666421 123456665554432 246799999998762 23467788888753
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
..++++|.+||.+..+++.+.+ |+. .++|..|+.++-...++..+.+. ..++..+..+++.+.| +.+++.+.++
T Consensus 144 ~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Le 219 (504)
T PRK14963 144 PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLE 219 (504)
T ss_pred CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4567788888999999999998 875 79999999999999998887543 2223336667776553 4455555555
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~al 180 (235)
.+.. . ...||.+++.+.+
T Consensus 220 kl~~----~-~~~It~~~V~~~l 237 (504)
T PRK14963 220 RLLA----L-GTPVTRKQVEEAL 237 (504)
T ss_pred HHHh----c-CCCCCHHHHHHHH
Confidence 4432 1 2358887777654
No 116
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00021 Score=67.31 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..|+++.+.+.. ...-|++|||+|.+-. ...+.||..++. ....+++|.+|+.++.|.++|+
T Consensus 102 ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 102 QDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred HHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHH
Confidence 455555544432 2346999999998832 256788888884 4567788888888999999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~ 178 (235)
+ |+. .++|.+|+.++....++..+... ..++..+..+++.+.| +.+++.++++.+...+ ...++.+++.+
T Consensus 168 S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~~----~~~It~e~V~~ 239 (563)
T PRK06647 168 S--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRS 239 (563)
T ss_pred H--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHH
Confidence 9 875 68999999999998888877443 2233346667777665 7777777777654321 23477776666
Q ss_pred HH
Q psy10044 179 AR 180 (235)
Q Consensus 179 al 180 (235)
.+
T Consensus 240 ll 241 (563)
T PRK06647 240 KM 241 (563)
T ss_pred Hh
Confidence 43
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.95 E-value=6.5e-05 Score=62.44 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=84.0
Q ss_pred CCeeEEeccchhhhhhccHHHH-HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGAR-RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~-~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+...+++++.+|...+...... .+.++.+..+ +..+|+|||+|.+.++. .....|...++.+...++
T Consensus 64 ~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~----------~~q~~lf~l~n~~~~~~k 131 (219)
T PF00308_consen 64 GKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ----------RTQEELFHLFNRLIESGK 131 (219)
T ss_dssp TS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH----------HHHHHHHHHHHHHHHTTS
T ss_pred cccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch----------HHHHHHHHHHHHHHhhCC
Confidence 4567788888887765443322 2223222222 34799999999986532 122333333343333455
Q ss_pred eEEEEecCCCCc---ccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHH
Q psy10044 83 VVVLGATNRRDD---LDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENM 155 (235)
Q Consensus 83 v~vIatTn~~~~---ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l 155 (235)
-+|+.+...|.. +++.|.+ ||. ..+++..|+.+.|..|++...... ..++.-+..|++..+ -+.++|..+
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~ 208 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGA 208 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHH
Confidence 566666566654 5788998 885 589999999999999999988654 222222555676655 478888887
Q ss_pred HHHHHH
Q psy10044 156 VNQAAL 161 (235)
Q Consensus 156 ~~~A~~ 161 (235)
++.-..
T Consensus 209 l~~l~~ 214 (219)
T PF00308_consen 209 LNRLDA 214 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776443
No 118
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00023 Score=67.49 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=101.7
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..++.+++++- -+...||++.+.++.. ...|++|||+|.+.. ...|.||..|+.. .
T Consensus 101 ~Dv~e~~a~s~------~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~naLLKtLEeP--p 160 (598)
T PRK09111 101 VDVLEMDAASH------TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAFNALLKTLEEP--P 160 (598)
T ss_pred CceEEeccccc------CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHHHHHHHHHHhC--C
Confidence 44556655421 1235677887777532 246999999998832 2467888888753 4
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
..+.+|.+|+.++.+.+.+++ |+ ..++|..|+.++-...++..+.+. ..++..+..+++.+.| +.+++.++++.
T Consensus 161 ~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldk 236 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQ 236 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 457777788888889999998 87 479999999999888888887543 2222335666777665 78888888776
Q ss_pred HHHHHHHcCCCCCcHHHHHHHH
Q psy10044 159 AALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~al 180 (235)
+... +...||.+++...+
T Consensus 237 li~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 237 AIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHhh----cCCCcCHHHHHHHh
Confidence 5433 23458888887654
No 119
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00013 Score=68.96 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=98.3
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCC-----eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTP-----CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P-----~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
..++.+++++ ..+...++++.+.++. .| -|++|||+|.+.. ...|.|+..|+. .
T Consensus 88 ~d~~eid~~s------~~~v~~ir~l~~~~~~-~p~~~~~KVvIIdev~~Lt~------------~a~naLLk~LEe--p 146 (576)
T PRK14965 88 VDVFEIDGAS------NTGVDDIRELRENVKY-LPSRSRYKIFIIDEVHMLST------------NAFNALLKTLEE--P 146 (576)
T ss_pred CCeeeeeccC------ccCHHHHHHHHHHHHh-ccccCCceEEEEEChhhCCH------------HHHHHHHHHHHc--C
Confidence 3455665533 1234567777776643 34 5999999998842 246788888885 3
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
..++++|.+||.++.|.+.+++ |+. .++|..++.++-...++..+.+. ..++..+..+++.+.| +.+++.+++.
T Consensus 147 p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ld 222 (576)
T PRK14965 147 PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLD 222 (576)
T ss_pred CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4578888888999999999998 874 78999999888888887776543 2233346677777765 6666666666
Q ss_pred HHHHHHHHcCCCCCcHHHHHHH
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~a 179 (235)
.+...+ + ..|+.+++...
T Consensus 223 qliay~---g-~~It~edV~~l 240 (576)
T PRK14965 223 QVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHhc---c-CCCCHHHHHHH
Confidence 544332 1 23666666544
No 120
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.0003 Score=68.81 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..+|++.+.+.. ..-.|++|||+|.|- ....+.||..|+. ...++.+|++|+.+..|.+.|+
T Consensus 102 DdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 102 DDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHH
Confidence 345555544432 234699999999983 3367889999985 3456778888999999999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
+ |+ .++.|..++.++-...++..+... ...+..+..+++.+.| +++++-+++..+.
T Consensus 168 S--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 168 S--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred H--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8 87 589999999999998888877542 2222236667776654 5667777776655
No 121
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.94 E-value=0.00013 Score=61.19 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=81.3
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC-eEEEEecCCCCc---ccHHhhCCCccc--EEEEcCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG-VVVLGATNRRDD---LDKALLRPGRFD--IEVNVPP 113 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vIatTn~~~~---ld~al~rpgRf~--~~i~i~~ 113 (235)
.+|+|||+|.+.++. .....+-.+++.+- .+++ -+++.+++.|.. +.|.|++ |+. ..+++.+
T Consensus 99 dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~---e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~ 166 (235)
T PRK08084 99 SLVCIDNIECIAGDE-------LWEMAIFDLYNRIL---ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQP 166 (235)
T ss_pred CEEEEeChhhhcCCH-------HHHHHHHHHHHHHH---HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecC
Confidence 589999999985432 12222333333321 1233 355555556555 6899999 986 8999999
Q ss_pred CCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 114 PDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 114 P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
|+.++|.++++...... ..++.-++.|++..+ =+.+.+..+++..-..+. ...+.||...+.+++
T Consensus 167 ~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~-~d~r~l~~~l~~l~~~~l-~~~~~it~~~~k~~l 233 (235)
T PRK08084 167 LSDEEKLQALQLRARLRGFELPEDVGRFLLKRLD-REMRTLFMTLDQLDRASI-TAQRKLTIPFVKEIL 233 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Confidence 99999999998855432 223333666777666 467777777777432333 334458888887765
No 122
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.92 E-value=8.6e-05 Score=59.91 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..++++.+.+.. ....|++|||+|.+.. ...+.||..|+.. ....++|.+||.++.++++++
T Consensus 79 ~~i~~i~~~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 79 DQVRELVEFLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHHHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHH
Confidence 566666666654 2357999999999843 2356788888763 345667777888899999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLY 126 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~ 126 (235)
+ |+. .+++++|+.++..++++..
T Consensus 145 s--r~~-~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 145 S--RCQ-VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred h--hcE-EeeCCCCCHHHHHHHHHHc
Confidence 9 774 8999999999998888876
No 123
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00023 Score=63.50 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...++.+++.+... .+.|++|||+|.+.. ...+.|+..++.. ....++|.+|+.+..+.+++
T Consensus 90 ~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~--~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 90 VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP--PAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred HHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC--CCceEEEEEeCCcccCCHHH
Confidence 46777878776532 246999999997742 2356777777642 34456666777889999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
.+ |+. .++++.|+.++...++...+.+. ..++..++.++..+.| +.+.+.+.++.....+ +.. ||.++++
T Consensus 156 ~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~~-it~~~v~ 227 (367)
T PRK14970 156 LS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GKN-ITRQAVT 227 (367)
T ss_pred Hh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CCC-CCHHHHH
Confidence 98 764 68999999999888888777543 2233346677776553 5555555555443222 222 7777766
Q ss_pred HHH
Q psy10044 178 YAR 180 (235)
Q Consensus 178 ~al 180 (235)
..+
T Consensus 228 ~~~ 230 (367)
T PRK14970 228 ENL 230 (367)
T ss_pred HHh
Confidence 554
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.90 E-value=0.00012 Score=71.01 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCeeEEeccchhhh-----hhccHHHHH-----HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDE-----VLVGQGARR-----VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 73 (235)
Q Consensus 4 ~~~~~~v~~s~l~~-----~~~g~~~~~-----i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ 73 (235)
+.+|+.++++++.+ .+.|..... -..+.+..++...|||||||+|.+.+ .+.+.|+..
T Consensus 513 ~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~------------~v~~~LLq~ 580 (758)
T PRK11034 513 GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP------------DVFNLLLQV 580 (758)
T ss_pred CCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH------------HHHHHHHHH
Confidence 57899999988754 233321111 11223334555569999999999842 356777777
Q ss_pred hcCC--C-------CCCCeEEEEecCCC-------------------------CcccHHhhCCCcccEEEEcCCCCHHHH
Q psy10044 74 MDGF--H-------QNEGVVVLGATNRR-------------------------DDLDKALLRPGRFDIEVNVPPPDYTGR 119 (235)
Q Consensus 74 ld~~--~-------~~~~v~vIatTn~~-------------------------~~ld~al~rpgRf~~~i~i~~P~~~~R 119 (235)
||.- . .-+++++|+|||.- ..+.|+++. |+|.+|.|++.+.++.
T Consensus 581 ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l 658 (758)
T PRK11034 581 MDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVI 658 (758)
T ss_pred HhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHH
Confidence 7631 1 11468899999932 135688888 9999999999999999
Q ss_pred HHHHHHHhcCc----cCC-------CCCHHHHHhc--CCCCCHHHHHHHHHHHHHH
Q psy10044 120 REILDLYLGKI----VSK-------NIDVDTLARG--TTGFTGADLENMVNQAALR 162 (235)
Q Consensus 120 ~~il~~~l~~~----~~~-------~~~l~~la~~--t~G~s~~di~~l~~~A~~~ 162 (235)
.+|+..++... ... +.-++.|++. ...|-.+.|+.++++-...
T Consensus 659 ~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~ 714 (758)
T PRK11034 659 HQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_pred HHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHH
Confidence 99999887543 111 1114445543 2345567777777765433
No 125
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00038 Score=65.22 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=89.3
Q ss_pred HHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 26 RVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 26 ~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
.++.+.+.+.. ...-|++|||+|.+.. ...+.||..|+. ....+.+|++|+.+..+.+.+++
T Consensus 103 ~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S 168 (546)
T PRK14957 103 ETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS 168 (546)
T ss_pred HHHHHHHHHHhhhhcCCcEEEEEechhhccH------------HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH
Confidence 45555555532 2346999999998732 356788888885 34567777777889999999998
Q ss_pred CCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 102 PGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 102 pgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
|+ ..++|..++.++-...++..+.+. ..++..+..+++.+ |-+.+++-++++.+...+ + ..|+.+++.++
T Consensus 169 --Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 169 --RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred --he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 87 689999999999888888776543 22333356666655 456666666666554321 1 34777666654
Q ss_pred H
Q psy10044 180 R 180 (235)
Q Consensus 180 l 180 (235)
+
T Consensus 241 l 241 (546)
T PRK14957 241 L 241 (546)
T ss_pred H
Confidence 3
No 126
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.86 E-value=0.00042 Score=61.47 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=92.1
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC---------C--CCCCCeEEEEecCCCC-cccHHhhCCCccc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG---------F--HQNEGVVVLGATNRRD-DLDKALLRPGRFD 106 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~---------~--~~~~~v~vIatTn~~~-~ld~al~rpgRf~ 106 (235)
..+||+||++.+-.. +.+.|+..|+. . ..+.++++|+|.|-.+ .+++++.. ||.
T Consensus 145 ~GiL~lDEInrL~~~------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~ 210 (350)
T CHL00081 145 RGILYVDEVNLLDDH------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFG 210 (350)
T ss_pred CCEEEecChHhCCHH------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhC
Confidence 379999999998432 33345544432 1 1235688888888655 69999999 999
Q ss_pred EEEEcCCCC-HHHHHHHHHHHhcCccC--------------------------CCCC--------HHHHHhcCCCCCHHH
Q psy10044 107 IEVNVPPPD-YTGRREILDLYLGKIVS--------------------------KNID--------VDTLARGTTGFTGAD 151 (235)
Q Consensus 107 ~~i~i~~P~-~~~R~~il~~~l~~~~~--------------------------~~~~--------l~~la~~t~G~s~~d 151 (235)
.++.++.|+ .+.|.+|++........ ..+. +.+++..+.--|++-
T Consensus 211 l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra 290 (350)
T CHL00081 211 MHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRG 290 (350)
T ss_pred ceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChH
Confidence 999999997 69999999875421100 0111 222344444346777
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 152 LENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 152 i~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
--.+++-|...|..+|+..++.+|+..+..-+..
T Consensus 291 ~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 291 DIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 7777788888889999999999999998766543
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.0003 Score=66.46 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=95.1
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..++.+++++-. +...++++-+.+.. ..--|++|||+|.+-. ...|.||..|+. ..
T Consensus 87 ~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------~A~NALLK~LEE--pp 146 (584)
T PRK14952 87 IDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------AGFNALLKIVEE--PP 146 (584)
T ss_pred ceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH------------HHHHHHHHHHhc--CC
Confidence 456667664321 23445555444422 2235999999999843 256788888885 35
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.++++|.+|+.++.|.+.|++ |. ..++|..++.++-...++..+.+. ..++..+..+++. .|-+.+++.++++.
T Consensus 147 ~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~-s~GdlR~aln~Ldq 222 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA-GGGSPRDTLSVLDQ 222 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 578888888999999999998 85 589999999988888888877543 1222224445553 34566677777766
Q ss_pred HHHHHHHcCCCCCcHHHHHHH
Q psy10044 159 AALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~a 179 (235)
.... .+...||.+++...
T Consensus 223 l~~~---~~~~~It~~~v~~l 240 (584)
T PRK14952 223 LLAG---AADTHVTYQRALGL 240 (584)
T ss_pred HHhc---cCCCCcCHHHHHHH
Confidence 4322 12334666555544
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00026 Score=65.04 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=83.2
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
....|++|||+|.+.. ...+.|+..++.. ...+++|.+||.+..|.+++++ |+. .++|..|+.
T Consensus 120 ~~~kvvIIdead~lt~------------~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~ 182 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK------------EAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPE 182 (451)
T ss_pred CCCEEEEEecHHhhCH------------HHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCH
Confidence 3468999999998842 2357788888853 4567777888889999999999 875 789999999
Q ss_pred HHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 117 TGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 117 ~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
++-...++..+.+. ..++..+..|+..+.| +.+++.+.++..... .+ ..|+.+++.+++
T Consensus 183 ~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 183 ETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 99888888776543 2233346677776653 555555555543321 22 337777766544
No 129
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00021 Score=67.29 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=97.5
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..++.+++++- -+...++.+.+.+... ..-|++|||+|.+-. ...+.|+..|+. ..
T Consensus 88 ~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~A~NaLLKtLEE--Pp 147 (605)
T PRK05896 88 VDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------SAWNALLKTLEE--PP 147 (605)
T ss_pred CceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------HHHHHHHHHHHh--CC
Confidence 45666665431 1234567776666432 235999999998832 134778888885 34
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
..+++|.+|+.++.|.+++++ |+. .++|+.|+.++....++..+.+. ..++..+..+++.+.| +.+++.++++.
T Consensus 148 ~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLek 223 (605)
T PRK05896 148 KHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQ 223 (605)
T ss_pred CcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 567888888889999999999 875 79999999999998888877543 1223336667776655 56666666665
Q ss_pred HHHHHHHcCCCCCcHHHHHHH
Q psy10044 159 AALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~a 179 (235)
... ..+. .|+.+++...
T Consensus 224 L~~---y~~~-~It~e~V~el 240 (605)
T PRK05896 224 LST---FKNS-EIDIEDINKT 240 (605)
T ss_pred HHh---hcCC-CCCHHHHHHH
Confidence 332 2222 2777666653
No 130
>PRK09087 hypothetical protein; Validated
Probab=97.84 E-value=0.00013 Score=61.00 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=83.1
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc---ccHHhhCCCccc--EEEEcCCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD---LDKALLRPGRFD--IEVNVPPP 114 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~---ld~al~rpgRf~--~~i~i~~P 114 (235)
.+|+|||+|.+... . .+|...++.+...++.++|+++..|.. ..+.|++ ||. ..+++..|
T Consensus 89 ~~l~iDDi~~~~~~---------~----~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~p 153 (226)
T PRK09087 89 GPVLIEDIDAGGFD---------E----TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEP 153 (226)
T ss_pred CeEEEECCCCCCCC---------H----HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCC
Confidence 47889999976211 1 123333333333445677766655543 3688999 985 79999999
Q ss_pred CHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 115 DYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
+.+.|..+++..+... ..++.-++.|++... =+.+.+..+++.-...+...+ ..+|...+.++++.+
T Consensus 154 d~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~-r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 154 DDALLSQVIFKLFADRQLYVDPHVVYYLVSRME-RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 9999999999998664 233334677787766 344555555555444444444 458999999988765
No 131
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00031 Score=65.74 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...++++.+.+... ...|++|||+|.+.. ...|.||..++. ....+.+|.+|+.++.+.+.+
T Consensus 101 vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 101 VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhH
Confidence 45677777776431 235999999998842 246788888885 345678888888899999899
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
++ |+ ..++|..|+.++-...++..+... ..++..+..+++.+. -+.+++.++++.+... +...|+.+++.
T Consensus 167 ~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~al~lldqai~~----~~~~I~~~~v~ 238 (527)
T PRK14969 167 LS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRDALSLLDQAIAY----GGGTVNESEVR 238 (527)
T ss_pred HH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHh----cCCCcCHHHHH
Confidence 88 87 589999999998888887777532 222233566666654 4677777777766533 34457777766
Q ss_pred HHH
Q psy10044 178 YAR 180 (235)
Q Consensus 178 ~al 180 (235)
..+
T Consensus 239 ~~~ 241 (527)
T PRK14969 239 AML 241 (527)
T ss_pred HHH
Confidence 654
No 132
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00057 Score=58.45 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC--------C--------CCCeEEEEe
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH--------Q--------NEGVVVLGA 88 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--------~--------~~~v~vIat 88 (235)
.-+-.++..... ..|+|||||+.+.+. +-..|.-.|+.+. . =.+..+|||
T Consensus 92 gDlaaiLt~Le~--~DVLFIDEIHrl~~~------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 92 GDLAAILTNLEE--GDVLFIDEIHRLSPA------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred hhHHHHHhcCCc--CCeEEEehhhhcChh------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 334444444433 479999999998542 1222333444431 1 136889999
Q ss_pred cCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q psy10044 89 TNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAID 166 (235)
Q Consensus 89 Tn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~ 166 (235)
|.+...|...|+. ||.....+...+.++-.+|++..-..+ ..++....++|+++.| ||+=--+++++..-.|.-.
T Consensus 158 TTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 158 TTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred ccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999999886544 2233346678888775 6777777888888788878
Q ss_pred CCCCCcHHHHHHHHHHhhC
Q psy10044 167 GVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 167 ~~~~i~~~~~~~al~~~~~ 185 (235)
+...|+.+--.+|++....
T Consensus 235 ~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 235 GDGDIDRDIADKALKMLDV 253 (332)
T ss_pred cCCcccHHHHHHHHHHhCc
Confidence 8888888888888877744
No 133
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.80 E-value=5.6e-05 Score=66.18 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=92.2
Q ss_pred CCCeeEEeccchhhhh--hccHHHHH----------HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEV--LVGQGARR----------VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~--~~g~~~~~----------i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.|.|++.|+++.-++. +.|...-. ....+..|.+ .++++++||+|..-+ .....++.+
T Consensus 88 l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEin~a~p---------~~~~~L~~l 157 (327)
T TIGR01650 88 LNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEYDAGRP---------DVMFVIQRV 157 (327)
T ss_pred HCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechhhccCH---------HHHHHHHHH
Confidence 3678888888776665 45543211 1223455554 469999999998622 234455556
Q ss_pred HHH-----hcC----CCCCCCeEEEEecCCCC------------cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC
Q psy10044 71 LAE-----MDG----FHQNEGVVVLGATNRRD------------DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 71 l~~-----ld~----~~~~~~v~vIatTn~~~------------~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~ 129 (235)
|.. +.+ +...++..||||+|..+ .+++|++. ||-..+.+++|+.++-.+|+......
T Consensus 158 LE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 158 LEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred hccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 652 111 12334688999999754 47999999 99988999999999999999876543
Q ss_pred ccCC-CCC----HHHHHhc----------CCCCCHHHHHHHHHHHHH
Q psy10044 130 IVSK-NID----VDTLARG----------TTGFTGADLENMVNQAAL 161 (235)
Q Consensus 130 ~~~~-~~~----l~~la~~----------t~G~s~~di~~l~~~A~~ 161 (235)
.... +.. +-++|.. ..|+|++.+..+.+.+.+
T Consensus 236 ~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~ 282 (327)
T TIGR01650 236 FDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEI 282 (327)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHh
Confidence 2100 000 1112221 346788888777766553
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.79 E-value=0.0003 Score=68.46 Aligned_cols=143 Identities=18% Similarity=0.237 Sum_probs=95.0
Q ss_pred CCeeEEeccchhhhh------------hccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEV------------LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~------------~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+.+++.++++++.+. |+|..+ ...+.+..+....+||+|||+|.+.+ .+.+.|+
T Consensus 509 ~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~------------~~~~~Ll 574 (731)
T TIGR02639 509 GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP------------DIYNILL 574 (731)
T ss_pred cCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH------------HHHHHHH
Confidence 567889998887652 233211 22334444556679999999998732 2566777
Q ss_pred HHhcCCC---------CCCCeEEEEecCCCC-------------------------cccHHhhCCCcccEEEEcCCCCHH
Q psy10044 72 AEMDGFH---------QNEGVVVLGATNRRD-------------------------DLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 72 ~~ld~~~---------~~~~v~vIatTn~~~-------------------------~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
..+|.-. .-+++++|+|||... .+.|.++. |||..|.|.+.+.+
T Consensus 575 ~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e 652 (731)
T TIGR02639 575 QVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEE 652 (731)
T ss_pred HhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHH
Confidence 7776421 124578999998642 25677777 99999999999999
Q ss_pred HHHHHHHHHhcCc----cC-------CCCCHHHHHhc--CCCCCHHHHHHHHHHHHHH
Q psy10044 118 GRREILDLYLGKI----VS-------KNIDVDTLARG--TTGFTGADLENMVNQAALR 162 (235)
Q Consensus 118 ~R~~il~~~l~~~----~~-------~~~~l~~la~~--t~G~s~~di~~l~~~A~~~ 162 (235)
+..+|++..+.+. .. ++.-++.|++. ...+-.+.|+.+++.....
T Consensus 653 ~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 653 VLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKK 710 (731)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHH
Confidence 9999999998653 11 11124456654 4556777888777765543
No 135
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.78 E-value=0.00023 Score=53.49 Aligned_cols=95 Identities=39% Similarity=0.503 Sum_probs=62.9
Q ss_pred CCeeEEeccchhhhhhccHHHHH---HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC-
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARR---VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ- 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~---i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~- 79 (235)
+.+++.+++.++........... ....+..+....+.+|++||++.+.. .....++..+.....
T Consensus 47 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~------------~~~~~~~~~i~~~~~~ 114 (151)
T cd00009 47 GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR------------GAQNALLRVLETLNDL 114 (151)
T ss_pred CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH------------HHHHHHHHHHHhcCce
Confidence 56788888888776544433222 23334455566789999999998721 112334444443322
Q ss_pred ---CCCeEEEEecCCCC--cccHHhhCCCcccEEEEcC
Q psy10044 80 ---NEGVVVLGATNRRD--DLDKALLRPGRFDIEVNVP 112 (235)
Q Consensus 80 ---~~~v~vIatTn~~~--~ld~al~rpgRf~~~i~i~ 112 (235)
..++.+|++||... .+++.+.. ||+.+++++
T Consensus 115 ~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 115 RIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred eccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 46788899999887 78889888 999888876
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.76 E-value=0.00078 Score=64.26 Aligned_cols=98 Identities=19% Similarity=0.090 Sum_probs=62.6
Q ss_pred CeEEEE-ecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 82 GVVVLG-ATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 82 ~v~vIa-tTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
++++|+ ||+.++.++++|++ ||. .+++++++.++...|++..+.+.. ..+.-+..|++.+. .++..-+++..
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~ 397 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILAD 397 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHH
Confidence 355555 55678899999999 997 678899999999999999887541 12222444555432 34444444444
Q ss_pred HHHHHHH--------cCCCCCcHHHHHHHHHHhh
Q psy10044 159 AALRAAI--------DGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 159 A~~~a~~--------~~~~~i~~~~~~~al~~~~ 184 (235)
+...+.. .+...|+.+|+++++..-.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 398 VYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 4322211 1223689999999986543
No 137
>PRK06620 hypothetical protein; Validated
Probab=97.76 E-value=0.00027 Score=58.53 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=80.5
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc--ccHHhhCCCccc--EEEEcCCC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD--LDKALLRPGRFD--IEVNVPPP 114 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~--ld~al~rpgRf~--~~i~i~~P 114 (235)
..+|+|||+|.+- ...+-.+.+.+. .+++.++|+++..|.. + |+|++ |+. ..+++.+|
T Consensus 86 ~d~lliDdi~~~~------------~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~p 147 (214)
T PRK06620 86 YNAFIIEDIENWQ------------EPALLHIFNIIN---EKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSP 147 (214)
T ss_pred CCEEEEeccccch------------HHHHHHHHHHHH---hcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCC
Confidence 3689999999430 112223333332 3456778888766664 6 88999 985 46999999
Q ss_pred CHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 115 DYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
+.+.|..+++...... ..++.-++.|++..+ =+.+.+..+++..-..+...+ ..||...+.+++
T Consensus 148 d~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 148 DDELIKILIFKHFSISSVTISRQIIDFLLVNLP-REYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 9999999999887643 233334666777665 467777777776433333333 568888877765
No 138
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.75 E-value=0.00047 Score=66.01 Aligned_cols=167 Identities=23% Similarity=0.275 Sum_probs=103.0
Q ss_pred CCeeEEeccchhhhhhccHH--HHHHHH---HHHH--HhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQG--ARRVRD---LFKA--AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 76 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~--~~~i~~---~F~~--A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~ 76 (235)
..||+.+.++...+..+|.. ++.++. .|.. .......||||||++.+-. .+.+.|+..|+.
T Consensus 85 ~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------------~~q~~Ll~~le~ 152 (633)
T TIGR02442 85 PVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------------HLVDVLLDAAAM 152 (633)
T ss_pred CCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------------HHHHHHHHHHhc
Confidence 46888887766555555532 111110 0100 0011235999999999843 245556666542
Q ss_pred C-----------CCCCCeEEEEecCCC-CcccHHhhCCCcccEEEEcCCC-CHHHHHHHHHHHhcCc-------------
Q psy10044 77 F-----------HQNEGVVVLGATNRR-DDLDKALLRPGRFDIEVNVPPP-DYTGRREILDLYLGKI------------- 130 (235)
Q Consensus 77 ~-----------~~~~~v~vIatTn~~-~~ld~al~rpgRf~~~i~i~~P-~~~~R~~il~~~l~~~------------- 130 (235)
= ....++.+|+|+|.. ..+.++|+. ||+.++.++.| +.++|.++++..+...
T Consensus 153 g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 230 (633)
T TIGR02442 153 GVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAE 230 (633)
T ss_pred CCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhh
Confidence 1 112468999999853 368999999 99999999987 5678888887643210
Q ss_pred -------------cCCCCC-----HHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 131 -------------VSKNID-----VDTLARGT--TGF-TGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 131 -------------~~~~~~-----l~~la~~t--~G~-s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
....+. +..++..+ .|. +.+-...+++-|...|..+++..++.+|+..|+.-+.
T Consensus 231 ~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 231 QEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 000111 22222222 244 4555566777787888899999999999999977665
No 139
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00062 Score=65.49 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...|+++.+.+... ...|++|||+|.+.. ...+.||..|+. ....+++|.+|+.++.|++.+
T Consensus 100 vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 100 VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEE--PPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHH
Confidence 45578887777542 246999999998742 246788888885 345778888888999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
++ |+. .++|.+|+.++-...++..+.+. ...+..+..+|+.+. -+.+++..++...... +...|+.+++.
T Consensus 166 ~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~-GslR~AlslLekl~~y----~~~~It~e~V~ 237 (725)
T PRK07133 166 LS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS-GSLRDALSIAEQVSIF----GNNKITLKNVE 237 (725)
T ss_pred Hh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHh----ccCCCCHHHHH
Confidence 99 885 89999999999988888776543 222222556666555 3556666666654322 12337777666
Q ss_pred HH
Q psy10044 178 YA 179 (235)
Q Consensus 178 ~a 179 (235)
..
T Consensus 238 el 239 (725)
T PRK07133 238 EL 239 (725)
T ss_pred HH
Confidence 54
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00076 Score=63.99 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..++++.+.+.. ...-|++|||+|.+.. ...+.||..++.. ...+++|.+|+..+.+.+.++
T Consensus 103 d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~naLLk~LEep--p~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 103 DDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAFNALLKTLEEP--PPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHHHHHHHHHhcC--CCCeEEEEEeCChhhhhHHHH
Confidence 345555444432 2246999999998742 2467788888754 345677777788888999998
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~ 178 (235)
+ |+. .++|..++..+-..+++..+... ..++..+..+++.+.| +.+++.+.++..... +...|+.+++..
T Consensus 169 S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ 240 (585)
T PRK14950 169 S--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLATT----YGGEISLSQVQS 240 (585)
T ss_pred h--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHH
Confidence 8 775 68999999998888888776543 1222336677777766 777777777753321 234578777665
Q ss_pred HH
Q psy10044 179 AR 180 (235)
Q Consensus 179 al 180 (235)
.+
T Consensus 241 ll 242 (585)
T PRK14950 241 LL 242 (585)
T ss_pred Hh
Confidence 43
No 141
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0011 Score=63.33 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 22 QGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 22 ~~~~~i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
.+...||++.+.+... ..-|++|||+|.|.. ...+.||..|+. ....+++|++|++++.+-+
T Consensus 101 ~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQARWKVYVIDECHMLST------------AAFNALLKTLEE--PPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCHHHHHHHHHHHhhChhcCCceEEEEECccccCH------------HHHHHHHHHHhc--CCcCeEEEEEeCChhhhhH
Confidence 4457888888877532 236999999998832 356788888884 3456788888888999999
Q ss_pred HhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 98 ALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 98 al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.|++ |+ ..++|..|+.++-...++....+. ......+..+++.+.| +.+++.++++.
T Consensus 167 TIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 167 TIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred HHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 9998 87 478898888877666666655442 1222236667776655 33555555554
No 142
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.69 E-value=0.0013 Score=61.48 Aligned_cols=132 Identities=23% Similarity=0.230 Sum_probs=89.9
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC---------C--CCCCCeEEEEecCCCC-------------c
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG---------F--HQNEGVVVLGATNRRD-------------D 94 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~---------~--~~~~~v~vIatTn~~~-------------~ 94 (235)
..+++|||+|.+-.+ ..+.|+..|+. . .-+.+..||||+|..+ .
T Consensus 301 ~Gil~iDEi~~l~~~------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~ 368 (509)
T smart00350 301 NGVCCIDEFDKMDDS------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENID 368 (509)
T ss_pred CCEEEEechhhCCHH------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccC
Confidence 368999999987431 23334444432 1 1124688999999643 6
Q ss_pred ccHHhhCCCcccEEEEc-CCCCHHHHHHHHHHHhcCcc------CC----CCC-----------------------HHHH
Q psy10044 95 LDKALLRPGRFDIEVNV-PPPDYTGRREILDLYLGKIV------SK----NID-----------------------VDTL 140 (235)
Q Consensus 95 ld~al~rpgRf~~~i~i-~~P~~~~R~~il~~~l~~~~------~~----~~~-----------------------l~~l 140 (235)
|++++++ |||..+.+ ..|+.+.+.+|.++.+.... .. ..+ .+.+
T Consensus 369 l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i 446 (509)
T smart00350 369 LPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKL 446 (509)
T ss_pred CChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 9999999 99986655 68999999999987542210 00 010 0001
Q ss_pred Hh-----c----------CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 141 AR-----G----------TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 141 a~-----~----------t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
.+ + ..+.|++.+..+++-|...|..+.+..++.+|+..|++-+.
T Consensus 447 ~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 447 VKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 00 1 23578999999999999999999999999999999987653
No 143
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00033 Score=64.87 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHH
Q psy10044 23 GARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKA 98 (235)
Q Consensus 23 ~~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~a 98 (235)
+...||++-+.+. ....-|.+|||+|-|. ....|.||+.++. ....|++|.+|..++.+|+.
T Consensus 100 gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE--PP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 100 GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE--PPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred ChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc--CccCeEEEEecCCcCcCchh
Confidence 4566777777774 2334699999998873 4567899999884 56789999999999999999
Q ss_pred hhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy10044 99 LLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALR 162 (235)
Q Consensus 99 l~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~ 162 (235)
+++ |.. ++.|..-+.++-...+...+.+- ...+--+.-+|+..+| |.+|...+++.|...
T Consensus 166 IlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 166 ILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred hhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHc
Confidence 999 874 67888888888888888887653 2333346667777775 678888887776644
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0007 Score=59.66 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...||++-+.+.. ...-|++||++|.+-. ...|.||+.++. ...++++|.+|+.++.|.|.+
T Consensus 88 id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI 153 (328)
T PRK05707 88 VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNR------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTI 153 (328)
T ss_pred HHHHHHHHHHHhhccccCCCeEEEECChhhCCH------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHH
Confidence 3455655554432 3356889999999843 356889999985 346788899999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCC
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTG 146 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G 146 (235)
++ |.. .+.|++|+.++-.+.+....... .+.+...++..+.|
T Consensus 154 ~S--Rc~-~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~l~la~G 195 (328)
T PRK05707 154 KS--RCQ-QQACPLPSNEESLQWLQQALPES--DERERIELLTLAGG 195 (328)
T ss_pred Hh--hce-eeeCCCcCHHHHHHHHHHhcccC--ChHHHHHHHHHcCC
Confidence 99 986 59999999998888777653221 22223444555555
No 145
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.61 E-value=0.00079 Score=63.89 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=88.2
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC---------CC--CCCCeEEEEecCCCC---cccHHhhCCCcc
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG---------FH--QNEGVVVLGATNRRD---DLDKALLRPGRF 105 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~---------~~--~~~~v~vIatTn~~~---~ld~al~rpgRf 105 (235)
.+||+||++.+-. .+.+.|+..|+. .. ...++.||||+|..+ .++++|+. ||
T Consensus 86 GvL~lDEi~rl~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf 151 (589)
T TIGR02031 86 GVLYVDMANLLDD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RL 151 (589)
T ss_pred CcEeccchhhCCH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hc
Confidence 5999999999843 244555555542 11 124688999988765 79999999 99
Q ss_pred cEEEEcCC-CCHHHHHHHHHHHhcCc--------------------cCCCC-----CHHHHHhcC--CCCC-HHHHHHHH
Q psy10044 106 DIEVNVPP-PDYTGRREILDLYLGKI--------------------VSKNI-----DVDTLARGT--TGFT-GADLENMV 156 (235)
Q Consensus 106 ~~~i~i~~-P~~~~R~~il~~~l~~~--------------------~~~~~-----~l~~la~~t--~G~s-~~di~~l~ 156 (235)
+.++.+.. |+.++|.+|++..+... ....+ .+..++..+ -|.+ .+--..++
T Consensus 152 ~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~ 231 (589)
T TIGR02031 152 ALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAV 231 (589)
T ss_pred cCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 99888874 57888999998865221 00111 122222221 2443 44445666
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
+-|...|..+++..++.+|+..|..-+.
T Consensus 232 r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 232 RAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 7777788889999999999999976655
No 146
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.59 E-value=0.001 Score=57.76 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=78.4
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHH
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTG 118 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~ 118 (235)
+.+|+|||+|.+... ..+.|+..++.... +..+|.++|.+..+.+++.+ |+. .+++++|+.++
T Consensus 103 ~~vviiDe~~~l~~~------------~~~~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~e 165 (319)
T PRK00440 103 FKIIFLDEADNLTSD------------AQQALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEA 165 (319)
T ss_pred ceEEEEeCcccCCHH------------HHHHHHHHHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHH
Confidence 469999999988431 12445555554432 34566677888888888988 876 58999999999
Q ss_pred HHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 119 RREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 119 R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
...+++.++.+. ..++..+..+++.+.| +.+.+.+.++.+.. . ...||.+++.++.
T Consensus 166 i~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~----~-~~~it~~~v~~~~ 223 (319)
T PRK00440 166 VAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA----T-GKEVTEEAVYKIT 223 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH----c-CCCCCHHHHHHHh
Confidence 999999888654 2233347777776544 34444444443322 2 3468888877765
No 147
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.59 E-value=0.00046 Score=65.65 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=68.4
Q ss_pred CeEEEEecCCC--CcccHHhhCCCccc---EEEEcC--CC-CHHHHHHHHHHHhcCc----cCCCCC---HHHHHh----
Q psy10044 82 GVVVLGATNRR--DDLDKALLRPGRFD---IEVNVP--PP-DYTGRREILDLYLGKI----VSKNID---VDTLAR---- 142 (235)
Q Consensus 82 ~v~vIatTn~~--~~ld~al~rpgRf~---~~i~i~--~P-~~~~R~~il~~~l~~~----~~~~~~---l~~la~---- 142 (235)
++.+|+++|.. ..+||+|+. ||+ ..++|. .| +.+.|..+.+...... ....++ +..+.+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999864 579999999 999 777664 34 5666666555433221 122333 233321
Q ss_pred cCC-----CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 143 GTT-----GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 143 ~t~-----G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.+. -.+.++|.+++++|...|..++...|+.+|+++|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 111 24679999999999888888888899999999987644
No 148
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.53 E-value=0.003 Score=58.60 Aligned_cols=121 Identities=9% Similarity=0.177 Sum_probs=83.3
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHH
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTG 118 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~ 118 (235)
|+|+++.|++.++.+ ....+.+..+...... .++.+|+.+.+ ..+|+.|.+ +-..+++++|+.++
T Consensus 82 ~~~~vl~d~h~~~~~-------~~~~r~l~~l~~~~~~---~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 82 PALFLLKDFNRFLND-------ISISRKLRNLSRILKT---QPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CcEEEEecchhhhcc-------hHHHHHHHHHHHHHHh---CCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 789999999999832 2234444444444442 34445555543 567877776 33578999999999
Q ss_pred HHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 119 RREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 119 R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
...+++.+.... ..++.+++.+++.+.|+|..++++++..+... ...++.+++...
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~-----~~~~~~~~~~~i 204 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT-----YKTIDENSIPLI 204 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----cCCCChhhHHHH
Confidence 999998887543 34556689999999999999999999875421 223555554433
No 149
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.53 E-value=0.00093 Score=57.77 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--cccHHhhCC
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD--DLDKALLRP 102 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~--~ld~al~rp 102 (235)
+.-..+....+...+-+|+|||++.++..... ..+.++| +|..+.+ .-+=+++.+||-.-.. .-|+-+-+
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~-----~qr~~Ln-~LK~L~N-eL~ipiV~vGt~~A~~al~~D~QLa~- 203 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR-----KQREFLN-ALKFLGN-ELQIPIVGVGTREAYRALRTDPQLAS- 203 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhcccHH-----HHHHHHH-HHHHHhh-ccCCCeEEeccHHHHHHhccCHHHHh-
Confidence 33444556777888999999999998653211 1222222 2333321 1122455555533222 34777878
Q ss_pred CcccEEEEcCCC-CHHHHHHHHHHHhcCc---cCCCCCHH----HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHH
Q psy10044 103 GRFDIEVNVPPP-DYTGRREILDLYLGKI---VSKNIDVD----TLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMK 174 (235)
Q Consensus 103 gRf~~~i~i~~P-~~~~R~~il~~~l~~~---~~~~~~l~----~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~ 174 (235)
||+ .+.+|.- ..++-..++..+-..+ ..+...-. .+-..|+|.+ +++.++++.|+..|++.|...||.+
T Consensus 204 -RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~E~It~~ 280 (302)
T PF05621_consen 204 -RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSGEERITRE 280 (302)
T ss_pred -ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCCceecHH
Confidence 997 5566643 2234445666554443 22333333 3445567655 5789999999999999999999999
Q ss_pred HHHH
Q psy10044 175 YLEY 178 (235)
Q Consensus 175 ~~~~ 178 (235)
.+..
T Consensus 281 ~l~~ 284 (302)
T PF05621_consen 281 ILDK 284 (302)
T ss_pred HHhh
Confidence 8876
No 150
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.49 E-value=0.0016 Score=57.43 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC---------
Q psy10044 22 QGARRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR--------- 91 (235)
Q Consensus 22 ~~~~~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~--------- 91 (235)
+.-+.++.+.+.-++ .-|-||||||++-|-- ...+-|-..|+. .---++|.|||+
T Consensus 274 ~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDI------------E~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd 338 (450)
T COG1224 274 EVNEKVKKWIEEGKAELVPGVLFIDEVHMLDI------------ECFSFLNRALES---ELAPIIILATNRGMTKIRGTD 338 (450)
T ss_pred HHHHHHHHHHhcCcEEeecceEEEechhhhhH------------HHHHHHHHHhhc---ccCcEEEEEcCCceeeecccC
Confidence 333444444443332 2399999999988721 122222222331 111266677774
Q ss_pred ---CCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q psy10044 92 ---RDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAID 166 (235)
Q Consensus 92 ---~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~ 166 (235)
|.-||..|+. |+ ..|...+.+.++-++|++.-...- ..++--++.|++....-|-+---+++.-|...|.++
T Consensus 339 ~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 339 IESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR 415 (450)
T ss_pred CcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh
Confidence 7789999998 87 477777889999999999876543 334445888888888888899999999999999999
Q ss_pred CCCCCcHHHHHHHHHHhh
Q psy10044 167 GVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 167 ~~~~i~~~~~~~al~~~~ 184 (235)
+...+..+|++.|-+-+.
T Consensus 416 g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 GSKRVEVEDVERAKELFL 433 (450)
T ss_pred CCCeeehhHHHHHHHHHh
Confidence 999999999999987664
No 151
>PLN03025 replication factor C subunit; Provisional
Probab=97.47 E-value=0.0012 Score=57.96 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=76.3
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
.+.|++|||+|.+... ..+.|+..++... ....+|.+||.++.+.++|++ |+ ..++|++|+.+
T Consensus 99 ~~kviiiDE~d~lt~~------------aq~aL~~~lE~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~ 161 (319)
T PLN03025 99 RHKIVILDEADSMTSG------------AQQALRRTMEIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQ 161 (319)
T ss_pred CeEEEEEechhhcCHH------------HHHHHHHHHhccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHH
Confidence 3579999999998532 1244555555432 334566788888999999998 77 47999999999
Q ss_pred HHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy10044 118 GRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178 (235)
Q Consensus 118 ~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~ 178 (235)
+....++..+.+. ..++..+..+++.+. +|+..+++.--..+ .+...++.+++.+
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~Lq~~~--~~~~~i~~~~v~~ 218 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNNLQATH--SGFGFVNQENVFK 218 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHH--hcCCCCCHHHHHH
Confidence 9999998877543 223334666776544 45555554322111 1234577666654
No 152
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0018 Score=58.59 Aligned_cols=139 Identities=13% Similarity=0.123 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...|+++.+.+.. ..-.|++|||+|.+.. ...+.|+..++.. ....++|.+|+.+..+-+++
T Consensus 109 id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 109 VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATI 174 (397)
T ss_pred HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHH
Confidence 3556665555532 1236999999998842 1345677777743 34556666777788999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-cCCCCCcHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAI-DGVPHVTMKYL 176 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~-~~~~~i~~~~~ 176 (235)
.+ |.. .++|.+++.++-...++..+... ..++..+..++..+.| +.+.+.+.++.....+.. .....|+.+++
T Consensus 175 ~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v 250 (397)
T PRK14955 175 AS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKV 250 (397)
T ss_pred HH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHH
Confidence 98 775 78999998888887777776543 1223336667776654 666666666655444321 22346888777
Q ss_pred HHHH
Q psy10044 177 EYAR 180 (235)
Q Consensus 177 ~~al 180 (235)
.+.+
T Consensus 251 ~~~v 254 (397)
T PRK14955 251 AELL 254 (397)
T ss_pred HHHH
Confidence 6654
No 153
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0013 Score=58.62 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=65.5
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
...-|++|||+|.+-. ...|.||+.++.. ..+.++|..|+.++.+.|.+++ |+ ..+.+++|+.
T Consensus 140 g~~rVviIDeAd~l~~------------~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~ 202 (351)
T PRK09112 140 GNWRIVIIDPADDMNR------------NAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDD 202 (351)
T ss_pred CCceEEEEEchhhcCH------------HHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCH
Confidence 3457999999999832 2457788888863 3455666677889999999998 88 5999999999
Q ss_pred HHHHHHHHHHhcCccCCCCCHHHHHhcCCC
Q psy10044 117 TGRREILDLYLGKIVSKNIDVDTLARGTTG 146 (235)
Q Consensus 117 ~~R~~il~~~l~~~~~~~~~l~~la~~t~G 146 (235)
++-..+++........++..+..+++.+.|
T Consensus 203 ~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G 232 (351)
T PRK09112 203 DELKKALSHLGSSQGSDGEITEALLQRSKG 232 (351)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHcCC
Confidence 999999987432111112224556665554
No 154
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0046 Score=58.92 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..|+++-+.+.. ...-|++|||+|.+.. ...+.|+..|+.. ...+++|.+|+.++.|.+.++
T Consensus 110 d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~ 175 (620)
T PRK14954 110 DDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIA 175 (620)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHH
Confidence 455555555421 2236999999998842 2357788888853 345666667777899999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-cCCCCCcHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAI-DGVPHVTMKYLE 177 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~-~~~~~i~~~~~~ 177 (235)
+ |. ..++|..++.++-...++..+... ..++..+..++..+.| +.+++.+.++.....+.. .....|+.+++.
T Consensus 176 S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~ 251 (620)
T PRK14954 176 S--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVA 251 (620)
T ss_pred h--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHH
Confidence 8 76 489999999988777777766532 2233346677776654 555555555544333211 224457777776
Q ss_pred HHH
Q psy10044 178 YAR 180 (235)
Q Consensus 178 ~al 180 (235)
+.+
T Consensus 252 ~lv 254 (620)
T PRK14954 252 ELL 254 (620)
T ss_pred HHH
Confidence 644
No 155
>KOG1514|consensus
Probab=97.38 E-value=0.0016 Score=61.77 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=98.1
Q ss_pred HHHHHHHHHh-hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC---
Q psy10044 26 RVRDLFKAAK-DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR--- 101 (235)
Q Consensus 26 ~i~~~F~~A~-~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r--- 101 (235)
.++.-|...+ ...|+||+|||+|.|+...+ .++-.|...-. ..+.+++||+.+|..+. |..++-
T Consensus 495 ~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---------dVlYn~fdWpt--~~~sKLvvi~IaNTmdl-PEr~l~nrv 562 (767)
T KOG1514|consen 495 ALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---------DVLYNIFDWPT--LKNSKLVVIAIANTMDL-PERLLMNRV 562 (767)
T ss_pred HHHHhhccCCCCCCCEEEEeccHHHHhcccH---------HHHHHHhcCCc--CCCCceEEEEecccccC-HHHHhccch
Confidence 3444444222 34589999999999987532 24444444432 34577888888887653 333332
Q ss_pred CCccc-EEEEcCCCCHHHHHHHHHHHhcCccCCCCC-HHHHHhcCCCCCH--HHHHHHHHHHHHHHHHcCC-------CC
Q psy10044 102 PGRFD-IEVNVPPPDYTGRREILDLYLGKIVSKNID-VDTLARGTTGFTG--ADLENMVNQAALRAAIDGV-------PH 170 (235)
Q Consensus 102 pgRf~-~~i~i~~P~~~~R~~il~~~l~~~~~~~~~-l~~la~~t~G~s~--~di~~l~~~A~~~a~~~~~-------~~ 170 (235)
.-|++ ..|.|.+.+.+|-++|+...|.....-+-+ ++-+|++-...|| +--..+|++|...|-.+.. ..
T Consensus 563 sSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~ 642 (767)
T KOG1514|consen 563 SSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQL 642 (767)
T ss_pred hhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccce
Confidence 11543 678899999999999999999887322223 3334444444444 3345678899888877655 56
Q ss_pred CcHHHHHHHHHHhhCCc
Q psy10044 171 VTMKYLEYARDKVLMGP 187 (235)
Q Consensus 171 i~~~~~~~al~~~~~~~ 187 (235)
++..++.+|+..+...+
T Consensus 643 v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 643 VGILHVMEAINEMLASP 659 (767)
T ss_pred eehHHHHHHHHHHhhhh
Confidence 89999999998887654
No 156
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.00097 Score=59.04 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...||++.+.+.. ..--|++||++|.+-. ...|.||+.++. ...++++|.+|++++.|.|.+
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI 179 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------AAANALLKTLEE--PPPGTVFLLVSARIDRLLPTI 179 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCH------------HHHHHHHHHhcC--CCcCcEEEEEECChhhCcHHH
Confidence 3556666555432 2235999999999843 356889999994 567889999999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLY 126 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~ 126 (235)
++ |. ..+.|++|+.++..+.|...
T Consensus 180 ~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 180 LS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred Hh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 99 88 58999999999988888754
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.004 Score=61.68 Aligned_cols=146 Identities=19% Similarity=0.283 Sum_probs=91.0
Q ss_pred CCeeEEeccchhhhh-----hccHHHH-----HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEV-----LVGQGAR-----RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 73 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~-----~~g~~~~-----~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ 73 (235)
+.+++.++++++.+. ..|.... .-..+.+..+...-+||+|||+|.+- ..+.+.|+..
T Consensus 623 ~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~------------~~v~~~Ll~~ 690 (852)
T TIGR03346 623 EDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH------------PDVFNVLLQV 690 (852)
T ss_pred CCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC------------HHHHHHHHHH
Confidence 568888998877542 1111000 01223334444445799999999762 2355666666
Q ss_pred hcCC--C-------CCCCeEEEEecCCCCc-------------------------ccHHhhCCCcccEEEEcCCCCHHHH
Q psy10044 74 MDGF--H-------QNEGVVVLGATNRRDD-------------------------LDKALLRPGRFDIEVNVPPPDYTGR 119 (235)
Q Consensus 74 ld~~--~-------~~~~v~vIatTn~~~~-------------------------ld~al~rpgRf~~~i~i~~P~~~~R 119 (235)
++.= . +-++.++|+|||.... ..|.|+. |+|..+.|.+++.+..
T Consensus 691 l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l 768 (852)
T TIGR03346 691 LDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQI 768 (852)
T ss_pred HhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHH
Confidence 6421 1 1246789999997321 3466776 9999999999999999
Q ss_pred HHHHHHHhcCc----cCC----CCC---HHHHHhcC--CCCCHHHHHHHHHHHHHHH
Q psy10044 120 REILDLYLGKI----VSK----NID---VDTLARGT--TGFTGADLENMVNQAALRA 163 (235)
Q Consensus 120 ~~il~~~l~~~----~~~----~~~---l~~la~~t--~G~s~~di~~l~~~A~~~a 163 (235)
.+|+...+... ... .++ ++.|++.. ..+..+.|++++++.....
T Consensus 769 ~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 769 ARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 99999888642 111 112 44566542 2566788888888766443
No 158
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0014 Score=58.55 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=71.4
Q ss_pred HHHHHHHHHH----hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A----~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..||++-+.+ ....|-|++|||+|.+- ....|.||+.++.. ..+.++|.+|+.++.+.|.++
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~------------~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~ 189 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMN------------ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIR 189 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcC------------HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhh
Confidence 3355544443 23457899999999872 23567888888853 445677889999999999998
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCC
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTG 146 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G 146 (235)
+ |+ ..+.|++|+.++-.+++....... .+..+..++..+.|
T Consensus 190 S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~--~~~~~~~l~~~s~G 230 (365)
T PRK07471 190 S--RC-RKLRLRPLAPEDVIDALAAAGPDL--PDDPRAALAALAEG 230 (365)
T ss_pred c--cc-eEEECCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHcCC
Confidence 8 87 489999999999988888764321 11112455555554
No 159
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.29 E-value=0.0032 Score=62.22 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=89.5
Q ss_pred CCeeEEeccchhhhh------------hccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEV------------LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~------------~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
.-.|+.++++++.+. |+|..+.- .+.+..+++..+||+|||+|..- ..+.+.|+
T Consensus 624 ~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~------------~~v~~~Ll 689 (852)
T TIGR03345 624 EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH------------PDVLELFY 689 (852)
T ss_pred CcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC------------HHHHHHHH
Confidence 346788888887653 44433221 13344456677999999998642 23556666
Q ss_pred HHhcCCC--C-------CCCeEEEEecCCCC-----------------------------cccHHhhCCCcccEEEEcCC
Q psy10044 72 AEMDGFH--Q-------NEGVVVLGATNRRD-----------------------------DLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 72 ~~ld~~~--~-------~~~v~vIatTn~~~-----------------------------~ld~al~rpgRf~~~i~i~~ 113 (235)
..+|.-. . -.+.++|.|||... .+.|+++. |++ .|.|.+
T Consensus 690 q~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~p 766 (852)
T TIGR03345 690 QVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLP 766 (852)
T ss_pred HHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCC
Confidence 6665321 0 14688999998521 15677888 997 889999
Q ss_pred CCHHHHHHHHHHHhcCcc------------CCCCCHHHHHhcCC--CCCHHHHHHHHHHHHH
Q psy10044 114 PDYTGRREILDLYLGKIV------------SKNIDVDTLARGTT--GFTGADLENMVNQAAL 161 (235)
Q Consensus 114 P~~~~R~~il~~~l~~~~------------~~~~~l~~la~~t~--G~s~~di~~l~~~A~~ 161 (235)
.+.++-..|+...+.... .++.-++.|++... .|-.+.|.++++.-..
T Consensus 767 Ls~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 767 LDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 999999999998875530 01111445666543 2557777777766443
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0045 Score=59.08 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhCC----CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDRT----PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~----P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...|+++.+.+.... .-|++|||+|.+.. ...+.|+..|+.. ....++|.+|+.+..|-++|
T Consensus 103 vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------~a~naLLK~LEep--p~~tifIL~tt~~~kIl~tI 168 (614)
T PRK14971 103 VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------AAFNAFLKTLEEP--PSYAIFILATTEKHKILPTI 168 (614)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEECcccCCH------------HHHHHHHHHHhCC--CCCeEEEEEeCCchhchHHH
Confidence 456777776664321 24999999999832 2467888888854 34567777777788999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
++ |.. .++|..++.++-...++..+... ......+..|+..+. -+.+++.+.++.....+ +.. |+.+++.
T Consensus 169 ~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-gdlr~al~~Lekl~~y~---~~~-It~~~V~ 240 (614)
T PRK14971 169 LS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-GGMRDALSIFDQVVSFT---GGN-ITYKSVI 240 (614)
T ss_pred Hh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHhc---cCC-ccHHHHH
Confidence 99 874 69999999998888888776553 222223667777664 35666655555433221 222 6655554
Q ss_pred HH
Q psy10044 178 YA 179 (235)
Q Consensus 178 ~a 179 (235)
+.
T Consensus 241 ~~ 242 (614)
T PRK14971 241 EN 242 (614)
T ss_pred HH
Confidence 43
No 161
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0025 Score=56.03 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...||++-+.+. ...--|++||++|.+-. ...|.||+.++. +..++++|.+|+.++.|.|.+
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTE------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCH------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHH
Confidence 455565544443 23346999999999842 356889999985 567789999999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLY 126 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~ 126 (235)
++ |.. .+.|++|+.++-.+.|...
T Consensus 155 ~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 155 YS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred Hh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 99 874 7899999998887777654
No 162
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.21 E-value=0.0086 Score=55.73 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=82.6
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCC-----C---------
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----------HQNEGVVVLGATNRR-----D--------- 93 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vIatTn~~-----~--------- 93 (235)
..+|||||++.+.. .+...|+.-|+.- ....++.+|+++|.- .
T Consensus 296 ~GvLfLDEi~e~~~------------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~ 363 (499)
T TIGR00368 296 NGVLFLDELPEFKR------------SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCS 363 (499)
T ss_pred CCeEecCChhhCCH------------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCC
Confidence 47999999998632 2344444444321 112468999999852 1
Q ss_pred ---------cccHHhhCCCcccEEEEcCCCCHH-------------HHHHHHHHHh------cCc----cCCCCC-----
Q psy10044 94 ---------DLDKALLRPGRFDIEVNVPPPDYT-------------GRREILDLYL------GKI----VSKNID----- 136 (235)
Q Consensus 94 ---------~ld~al~rpgRf~~~i~i~~P~~~-------------~R~~il~~~l------~~~----~~~~~~----- 136 (235)
.|...|+. |||.++.++.++.+ -|..+.+..- ... ....++
T Consensus 364 ~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~ 441 (499)
T TIGR00368 364 PQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIE 441 (499)
T ss_pred HHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHH
Confidence 58899999 99999999976443 2233322211 010 011111
Q ss_pred ------------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 137 ------------VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 137 ------------l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+.... ...++|.+-...+++-|.-.|-.++...++.+|+.+|+.
T Consensus 442 ~~~~l~~~~~~~l~~a~-~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 442 QFCKLSAIDANDLEGAL-NKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred hhcCCCHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 11112 234689999999999999999999999999999999874
No 163
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.003 Score=55.80 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=64.7
Q ss_pred HHHHHHHHHH----hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A----~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..||++-+.+ ....--|++||++|.+-. ...|.||+.|+. +..++++|..|+.++.|.|.++
T Consensus 91 dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 91 DAVREVTEKLYEHARLGGAKVVWLPDAALLTD------------AAANALLKTLEE--PPENTWFFLACREPARLLATLR 156 (334)
T ss_pred HHHHHHHHHHhhccccCCceEEEEcchHhhCH------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHH
Confidence 3444444433 334456999999999843 356889999995 5677899999999999999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDL 125 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~ 125 (235)
+ |.. .+.|++|+.++-.+.+..
T Consensus 157 S--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 157 S--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred h--ccc-cccCCCCCHHHHHHHHHH
Confidence 9 886 689999998887777654
No 164
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0018 Score=56.78 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=66.7
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC--------CCCCeEEEEec----CCCCc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH--------QNEGVVVLGAT----NRRDD 94 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vIatT----n~~~~ 94 (235)
-++..+.|..+ .|+||||||.++.+.+.++..-....+-..+|-.++|-. ..+.+++||+- ..|.+
T Consensus 241 ~~eAi~~aE~~--GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD 318 (444)
T COG1220 241 KQEAIDAAEQN--GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD 318 (444)
T ss_pred HHHHHHHHHhc--CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh
Confidence 34445555544 699999999999877533222223334455666666542 34569999885 56889
Q ss_pred ccHHhhCCCcccEEEEcCCCCHHHHHHHHH
Q psy10044 95 LDKALLRPGRFDIEVNVPPPDYTGRREILD 124 (235)
Q Consensus 95 ld~al~rpgRf~~~i~i~~P~~~~R~~il~ 124 (235)
|=|.|.- ||.-.+++...+.+.-..||.
T Consensus 319 LiPELQG--RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 319 LIPELQG--RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred cChhhcC--CCceEEEcccCCHHHHHHHHc
Confidence 9999976 999999999999998888765
No 165
>KOG0741|consensus
Probab=97.07 E-value=0.0033 Score=58.04 Aligned_cols=119 Identities=17% Similarity=0.286 Sum_probs=83.2
Q ss_pred CCCeeEEeccch-hhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC-
Q psy10044 3 THPDTNHAQGPE-FDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN- 80 (235)
Q Consensus 3 s~~~~~~v~~s~-l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~- 80 (235)
|+-||+++-.++ .........-..|+.+|+.|++..=+||++|+++.|..=- +-+...++.+++.|+..+....++
T Consensus 562 S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--pIGPRfSN~vlQaL~VllK~~ppkg 639 (744)
T KOG0741|consen 562 SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--PIGPRFSNLVLQALLVLLKKQPPKG 639 (744)
T ss_pred cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc--ccCchhhHHHHHHHHHHhccCCCCC
Confidence 567899876654 3333333445569999999999888999999999987422 123456788899999999877544
Q ss_pred CCeEEEEecCCCCcccH-HhhCCCcccEEEEcCCCCH-HHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDK-ALLRPGRFDIEVNVPPPDY-TGRREILDL 125 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~-al~rpgRf~~~i~i~~P~~-~~R~~il~~ 125 (235)
.+.+|++||.+.+-|.. .+.. .|+..|.+|.-+. ++-.+++..
T Consensus 640 ~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 640 RKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 45788888876655433 2345 8999999987644 555555543
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.05 E-value=0.0072 Score=59.68 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=89.0
Q ss_pred CCeeEEeccchhhh-----h-------hccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDE-----V-------LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~-----~-------~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+.+++.++.+++.+ + |+|-.+ ...+.+..+....+||+|||+|..- ..+.+.|+
T Consensus 567 ~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~------------~~v~~~Ll 632 (821)
T CHL00095 567 EDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLL 632 (821)
T ss_pred ccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCC------------HHHHHHHH
Confidence 45788888877743 2 222211 1234455555555999999999863 23567777
Q ss_pred HHhcCCC---------CCCCeEEEEecCCCCc-------------------------------------ccHHhhCCCcc
Q psy10044 72 AEMDGFH---------QNEGVVVLGATNRRDD-------------------------------------LDKALLRPGRF 105 (235)
Q Consensus 72 ~~ld~~~---------~~~~v~vIatTn~~~~-------------------------------------ld~al~rpgRf 105 (235)
..++.-. +-++.++|+|||.... ..|.++. |+
T Consensus 633 q~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Ri 710 (821)
T CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RL 710 (821)
T ss_pred HHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cC
Confidence 7776410 1246899999985321 2356777 99
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCc----cCC-------CCCHHHHHhc--CCCCCHHHHHHHHHHHH
Q psy10044 106 DIEVNVPPPDYTGRREILDLYLGKI----VSK-------NIDVDTLARG--TTGFTGADLENMVNQAA 160 (235)
Q Consensus 106 ~~~i~i~~P~~~~R~~il~~~l~~~----~~~-------~~~l~~la~~--t~G~s~~di~~l~~~A~ 160 (235)
|.+|.|.+.+.++-..|++..+... ... +.-.+.|++. ...|-.+.|+.++++-.
T Consensus 711 d~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i 778 (821)
T CHL00095 711 DEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLL 778 (821)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Confidence 9999999999999999999888653 111 1114455554 23455666666666544
No 167
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0048 Score=54.14 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=71.9
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
++..|+.+.+.+- ++. -+...||++-+.+.. ..--|++||++|.+- ....|.||+.++.
T Consensus 72 ~HPD~~~i~p~~~-~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE-- 134 (319)
T PRK06090 72 NHPDLHVIKPEKE-GKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE-- 134 (319)
T ss_pred CCCCEEEEecCcC-CCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC--
Confidence 3456666654220 011 123445555444432 224699999999984 2356889999995
Q ss_pred CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHH
Q psy10044 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDL 125 (235)
Q Consensus 79 ~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~ 125 (235)
+..++++|..|+.++.|-|.+++ |.. .+.|++|+.++-.+.+..
T Consensus 135 Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 135 PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 56678999999999999999999 875 789999999888777654
No 168
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.04 E-value=0.016 Score=53.95 Aligned_cols=128 Identities=19% Similarity=0.255 Sum_probs=83.0
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCCC---------------
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----------HQNEGVVVLGATNRRD--------------- 93 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vIatTn~~~--------------- 93 (235)
-+||+||++.+-. .+...|+.-|+.= ....++.+|+|+|...
T Consensus 296 GvLfLDEi~e~~~------------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~ 363 (506)
T PRK09862 296 GVLFLDELPEFER------------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQ 363 (506)
T ss_pred CEEecCCchhCCH------------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHH
Confidence 6999999977522 3445555544211 1234689999999742
Q ss_pred ------cccHHhhCCCcccEEEEcCCCCHH----------HHHHHHHHHhc---------CccCCCCC---HH-------
Q psy10044 94 ------DLDKALLRPGRFDIEVNVPPPDYT----------GRREILDLYLG---------KIVSKNID---VD------- 138 (235)
Q Consensus 94 ------~ld~al~rpgRf~~~i~i~~P~~~----------~R~~il~~~l~---------~~~~~~~~---l~------- 138 (235)
.|..+++. |||.+++++.|+.+ .+..+-+.... +.....+. +.
T Consensus 364 ~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~ 441 (506)
T PRK09862 364 TLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLES 441 (506)
T ss_pred HHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCH
Confidence 47889999 99999999988532 12222211110 00001110 11
Q ss_pred ---H---HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 139 ---T---LARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 139 ---~---la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+ -+...-|+|++....+++-|.-.|-.++...|+.+|+.+|+.
T Consensus 442 ~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 442 EDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 1 112344789999999999999999999999999999999974
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.02 E-value=0.0024 Score=56.16 Aligned_cols=74 Identities=26% Similarity=0.358 Sum_probs=54.2
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC----------CCCCCCeEEEEecC-----CCCcccHHhhCCCc
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG----------FHQNEGVVVLGATN-----RRDDLDKALLRPGR 104 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~----------~~~~~~v~vIatTn-----~~~~ld~al~rpgR 104 (235)
+|+|+|||+...+ .+.+.|+..|+. +.-..+.+||+|+| ....+++|+++ |
T Consensus 114 ~ill~DEInra~p------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--R 179 (329)
T COG0714 114 VILLLDEINRAPP------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--R 179 (329)
T ss_pred eEEEEeccccCCH------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--h
Confidence 4999999987532 245566666654 22346789999999 67789999999 9
Q ss_pred ccEEEEcCCC-CHHHHHHHHHHHh
Q psy10044 105 FDIEVNVPPP-DYTGRREILDLYL 127 (235)
Q Consensus 105 f~~~i~i~~P-~~~~R~~il~~~l 127 (235)
|-..+.+++| ...+...++....
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHhCc
Confidence 9999999999 5555665555554
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0079 Score=52.82 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhCC----CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKDRT----PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~----P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...||++-+.+.... --|++||++|.+-. ...|.||+.++. ...++++|.+|+.++.|.|.+
T Consensus 95 idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAINR------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHH
Confidence 456777766554322 25999999999832 356889999885 455778888999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTG 149 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~ 149 (235)
++ |+. .+.|+.|+.++-...+... . .+..+...++..+.|--+
T Consensus 161 rS--RCq-~i~~~~~~~~~~~~~L~~~--~--~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 161 RS--RCQ-RLEFKLPPAHEALAWLLAQ--G--VSERAAQEALDAARGHPG 203 (319)
T ss_pred Hh--hhe-EeeCCCcCHHHHHHHHHHc--C--CChHHHHHHHHHcCCCHH
Confidence 99 885 7899999988777666542 1 122223345555555444
No 171
>KOG1942|consensus
Probab=96.98 E-value=0.013 Score=50.57 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=101.8
Q ss_pred chhhhhhccHHHHHHHHHHHHHh-hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy10044 13 PEFDEVLVGQGARRVRDLFKAAK-DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91 (235)
Q Consensus 13 s~l~~~~~g~~~~~i~~~F~~A~-~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~ 91 (235)
.++.++.-|+--+-++...++-. ..-|.+|||||++-|- -.....|-..++. +---+||.+||+
T Consensus 270 TEITdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLD------------iEcFTyL~kalES---~iaPivifAsNr 334 (456)
T KOG1942|consen 270 TEITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLD------------IECFTYLHKALES---PIAPIVIFASNR 334 (456)
T ss_pred chhHHHHHHHHHHHHHHHHhcchhhhcCcceEeeehhhhh------------hHHHHHHHHHhcC---CCCceEEEecCC
Confidence 44555666666666666555432 3459999999998762 1233444444442 212255566663
Q ss_pred -------------CCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC--ccCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 92 -------------RDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK--IVSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 92 -------------~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~--~~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
|..+|+.|+. |+- .|..-+.+.++-++|++.-... +...+.-++.|+.....-|-+---+++
T Consensus 335 G~~~irGt~d~~sPhGip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl 411 (456)
T KOG1942|consen 335 GMCTIRGTEDILSPHGIPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLL 411 (456)
T ss_pred cceeecCCcCCCCCCCCCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhc
Confidence 6678999998 874 4444444555555676655433 233444577788877777888888888
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
.-|...|-..|+..|..+|++++-+-+..
T Consensus 412 ~p~~~~ak~~g~~~i~v~dvee~~~Lf~D 440 (456)
T KOG1942|consen 412 TPASILAKTNGRKEISVEDVEEVTELFLD 440 (456)
T ss_pred CHHHHHHHHcCCceeecccHHHHHHHHHh
Confidence 88999999999999999999998776644
No 172
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.96 E-value=0.0044 Score=56.66 Aligned_cols=73 Identities=29% Similarity=0.495 Sum_probs=49.0
Q ss_pred HHHHHHHHhhC--CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhc--------------------CCCCCCCeE
Q psy10044 27 VRDLFKAAKDR--TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD--------------------GFHQNEGVV 84 (235)
Q Consensus 27 i~~~F~~A~~~--~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld--------------------~~~~~~~v~ 84 (235)
+.++...|+.. .|++|+|||++.--..+ +..+++..|+ .+.-..++.
T Consensus 259 f~~~~~~A~~~p~~~~vliIDEINRani~k-----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~ 327 (459)
T PRK11331 259 FYNFCQQAKEQPEKKYVFIIDEINRANLSK-----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVY 327 (459)
T ss_pred HHHHHHHHHhcccCCcEEEEehhhccCHHH-----------hhhhhhhhccccccccccceeeeccccccccccCCCCeE
Confidence 34445666643 58999999998754332 2222222222 234457899
Q ss_pred EEEecCCCC----cccHHhhCCCcccEEEEcCC
Q psy10044 85 VLGATNRRD----DLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 85 vIatTn~~~----~ld~al~rpgRf~~~i~i~~ 113 (235)
+|||+|..+ .+|.||+| ||. .|++.+
T Consensus 328 IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 328 IIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred EEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 999999988 89999999 996 466664
No 173
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.95 E-value=0.011 Score=55.93 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=88.4
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCC---CcccHHhhCCCcc
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----------HQNEGVVVLGATNRR---DDLDKALLRPGRF 105 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vIatTn~~---~~ld~al~rpgRf 105 (235)
.|||+||+..+- ..+++.|+.-|+.= ....+.++||+-|.. ..|+++++. ||
T Consensus 95 GvL~lDe~n~~~------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf 160 (584)
T PRK13406 95 GVLVLAMAERLE------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RL 160 (584)
T ss_pred CEEEecCcccCC------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--he
Confidence 699999997762 34777788777631 123467888864322 459999999 99
Q ss_pred cEEEEcCCCCHHHHH-------HHH--HHHhcCccCCCCCHHHHHhc--CCCC-CHHHHHHHHHHHHHHHHHcCCCCCcH
Q psy10044 106 DIEVNVPPPDYTGRR-------EIL--DLYLGKIVSKNIDVDTLARG--TTGF-TGADLENMVNQAALRAAIDGVPHVTM 173 (235)
Q Consensus 106 ~~~i~i~~P~~~~R~-------~il--~~~l~~~~~~~~~l~~la~~--t~G~-s~~di~~l~~~A~~~a~~~~~~~i~~ 173 (235)
+.++.++.|+..+-. +|. +..+.....++..+..+++. .-|. |.+--..+++-|.-.|..+++..|+.
T Consensus 161 ~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~ 240 (584)
T PRK13406 161 AFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEE 240 (584)
T ss_pred EEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCH
Confidence 999999988755321 222 22222222222224444332 2365 77888888898999999999999999
Q ss_pred HHHHHHHHHhh
Q psy10044 174 KYLEYARDKVL 184 (235)
Q Consensus 174 ~~~~~al~~~~ 184 (235)
+|+.+|+.-+.
T Consensus 241 ~dv~~Aa~lvL 251 (584)
T PRK13406 241 EDLALAARLVL 251 (584)
T ss_pred HHHHHHHHHHH
Confidence 99999976554
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.84 E-value=0.0017 Score=48.06 Aligned_cols=86 Identities=24% Similarity=0.270 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCcccHHh
Q psy10044 21 GQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR-RDDLDKAL 99 (235)
Q Consensus 21 g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~-~~~ld~al 99 (235)
......++.+++.|+...|.+|++||++.+........ .................+..+|+++|. ....+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 134 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL------LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALL 134 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH------HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhh
Confidence 45677888999999988899999999999876432110 000000000111122455788888886 44555555
Q ss_pred hCCCcccEEEEcCCC
Q psy10044 100 LRPGRFDIEVNVPPP 114 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P 114 (235)
.+ |++..+.++.|
T Consensus 135 ~~--~~~~~~~~~~~ 147 (148)
T smart00382 135 RR--RFDRRIVLLLI 147 (148)
T ss_pred hh--ccceEEEecCC
Confidence 55 99998888665
No 175
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.82 E-value=0.03 Score=47.16 Aligned_cols=107 Identities=17% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC--CCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF--HQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~--~~~ 80 (235)
|+-++.|+..+|. .+-.+++..+. ..+-|||+||+- +... +. --..|-..|+|- ..+
T Consensus 80 GLRlIev~k~~L~---------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~----~yk~LKs~LeGgle~~P 139 (249)
T PF05673_consen 80 GLRLIEVSKEDLG---------DLPELLDLLRDRPYKFILFCDDLS--FEEG-----DT----EYKALKSVLEGGLEARP 139 (249)
T ss_pred CceEEEECHHHhc---------cHHHHHHHHhcCCCCEEEEecCCC--CCCC-----cH----HHHHHHHHhcCccccCC
Confidence 4556666665553 34556666553 346899999853 2211 11 224555556654 456
Q ss_pred CCeEEEEecCCCCcccHHhh-C--------------------CCcccEEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 81 EGVVVLGATNRRDDLDKALL-R--------------------PGRFDIEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~-r--------------------pgRf~~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
.+|++.||+|+-..++.... + ..||...|.|.+|++++=.+|++.++...
T Consensus 140 ~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 140 DNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred CcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 78999999998655544333 1 23899999999999999999999999654
No 176
>KOG2680|consensus
Probab=96.80 E-value=0.043 Score=47.67 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=89.0
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC------------CCCcccHHhhCCCcc
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN------------RRDDLDKALLRPGRF 105 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn------------~~~~ld~al~rpgRf 105 (235)
-|.||||||++-|-- ..=..+|.-|.. .-.+ ++|.+|| .|..+|-.|+. |.
T Consensus 288 vpGVLFIDEvHMLDI---------EcFsFlNrAlE~-----d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDI---------ECFSFLNRALEN-----DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM 350 (454)
T ss_pred ccceEEEeeehhhhh---------HHHHHHHHHhhh-----ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh
Confidence 399999999987621 111222222211 1123 4444555 36788988888 76
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 106 DIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 106 ~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
..|...+.+.++-+.||+.-+..- ...+-.++.|......-|-+---+++.-|...|.+++...+..+|++.+..-+
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLF 429 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHH
Confidence 367777779999999999877553 22222355666666667777888899999999999999999999999998777
Q ss_pred hC
Q psy10044 184 LM 185 (235)
Q Consensus 184 ~~ 185 (235)
..
T Consensus 430 lD 431 (454)
T KOG2680|consen 430 LD 431 (454)
T ss_pred hh
Confidence 54
No 177
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.019 Score=50.14 Aligned_cols=103 Identities=12% Similarity=0.182 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..|+++-+.+.. ...-|++||++|.+-. ...|.||..++. ...++++|.+|+.++.+.|.++
T Consensus 76 ~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 76 DDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------QAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHHHhcCcccCCceEEEEechhhcCH------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHH
Confidence 346666554432 2346999999988732 245788888885 3456677777788999999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCC
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTG 146 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G 146 (235)
+ |. ..++|..|+.++-...++..+... ++..+..++..+.|
T Consensus 142 S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~l~~~~~g 182 (313)
T PRK05564 142 S--RC-QIYKLNRLSKEEIEKFISYKYNDI--KEEEKKSAIAFSDG 182 (313)
T ss_pred h--hc-eeeeCCCcCHHHHHHHHHHHhcCC--CHHHHHHHHHHcCC
Confidence 9 77 489999999998877776654322 12224455555554
No 178
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.031 Score=53.44 Aligned_cols=101 Identities=25% Similarity=0.346 Sum_probs=71.6
Q ss_pred CeEEEEecCC-----CCcccHHhhCCCcccEEEEcC--CC-CHHHHHHHHHHHhcCcc-C---CCCC---HHHH---H-h
Q psy10044 82 GVVVLGATNR-----RDDLDKALLRPGRFDIEVNVP--PP-DYTGRREILDLYLGKIV-S---KNID---VDTL---A-R 142 (235)
Q Consensus 82 ~v~vIatTn~-----~~~ld~al~rpgRf~~~i~i~--~P-~~~~R~~il~~~l~~~~-~---~~~~---l~~l---a-~ 142 (235)
.+.+|+.-|+ ...+|+.++. -|....++. .| +.+.|..+++.+.+... . ...+ +.+| | +
T Consensus 276 d~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R 353 (647)
T COG1067 276 DLKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAAR 353 (647)
T ss_pred ceEEEeeCCHHHHHhhcccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3666767664 3456666666 566656664 67 78899999999886651 1 2222 2222 2 2
Q ss_pred cCC-----CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 143 GTT-----GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 143 ~t~-----G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
.++ -.+++||.++++.|.-.|..+++..|+.+|+++|+++..
T Consensus 354 ~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~ 400 (647)
T COG1067 354 RAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKRE 400 (647)
T ss_pred hccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhhh
Confidence 221 268999999999999999999999999999999997743
No 179
>KOG2227|consensus
Probab=96.58 E-value=0.019 Score=52.40 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=98.0
Q ss_pred HHHHHHHHHHH-hhC-CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 24 ARRVRDLFKAA-KDR-TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 24 ~~~i~~~F~~A-~~~-~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
+......|+.= .+. .|-++++||+|.|+.+.. . ++- -+-++..+ .+.++++||.+|..+.=|..|.|
T Consensus 240 ~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-~--------vLy-~lFewp~l-p~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 240 GMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-T--------VLY-TLFEWPKL-PNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred hHHHHHHHHHHHhcccceEEEEechhhHHhhccc-c--------eee-eehhcccC-CcceeeeeeehhhhhHHHHHhhh
Confidence 34444555443 222 378999999999984321 1 111 12223333 45778999999998877766654
Q ss_pred ----CCcccEEEEcCCCCHHHHHHHHHHHhcCccC---CCCCHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHcCC----
Q psy10044 102 ----PGRFDIEVNVPPPDYTGRREILDLYLGKIVS---KNIDVDTLARGTTGFTGA--DLENMVNQAALRAAIDGV---- 168 (235)
Q Consensus 102 ----pgRf~~~i~i~~P~~~~R~~il~~~l~~~~~---~~~~l~~la~~t~G~s~~--di~~l~~~A~~~a~~~~~---- 168 (235)
-+.-...+.|++.+.++-.+|++.-+..... .+..+.-.|++..|.||. ..-.+|+.|...+-.+.+
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~ 388 (529)
T KOG2227|consen 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILD 388 (529)
T ss_pred hhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 1233468899999999999999999977622 223366678888888873 334566777766655432
Q ss_pred ------------CCCcHHHHHHHHHHhhCCc
Q psy10044 169 ------------PHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 169 ------------~~i~~~~~~~al~~~~~~~ 187 (235)
..|..+++..++..+..++
T Consensus 389 ~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 389 DPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred cCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 2344677777777765554
No 180
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.075 Score=44.98 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=89.8
Q ss_pred HHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC----
Q psy10044 27 VRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR---- 101 (235)
Q Consensus 27 i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r---- 101 (235)
-+.+.+..++ ..|.++++||.+.+.... ...+.-|.+.-.+..+.-.++.||=.. |.+.+++
T Consensus 119 ~~~L~al~~~g~r~v~l~vdEah~L~~~~---------le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~ 185 (269)
T COG3267 119 DRELAALVKKGKRPVVLMVDEAHDLNDSA---------LEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLR 185 (269)
T ss_pred HHHHHHHHHhCCCCeEEeehhHhhhChhH---------HHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHH
Confidence 3334444444 447999999999985421 222223333323322323466666542 3332222
Q ss_pred --CCcccEEEEcCCCCHHHHHHHHHHHhcCc-----cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHH
Q psy10044 102 --PGRFDIEVNVPPPDYTGRREILDLYLGKI-----VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMK 174 (235)
Q Consensus 102 --pgRf~~~i~i~~P~~~~R~~il~~~l~~~-----~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~ 174 (235)
--|++..|++++-+.++-...++..+... ..++--+..+...+.| .|.-|.++|..|...|...+.+.++..
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a 264 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEA 264 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchh
Confidence 12788779999999998888999888664 2233347778888888 899999999999999999999888876
Q ss_pred HHH
Q psy10044 175 YLE 177 (235)
Q Consensus 175 ~~~ 177 (235)
.+.
T Consensus 265 ~~~ 267 (269)
T COG3267 265 EIK 267 (269)
T ss_pred hcc
Confidence 553
No 181
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.04 Score=47.77 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...||++-+.+.. ..--|++||++|.+.. ...|.||+.++. +..++++|..|++++.|-|.+
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI 151 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTI 151 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHH
Confidence 3556665554432 2236999999999843 346889999985 456688999999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
++ |.. .+.|+. +.++-.+++... +. . .+...++....| +++....+.+
T Consensus 152 ~S--Rcq-~i~f~~-~~~~~~~~L~~~--g~--~-~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 152 KS--RTQ-IFHFPK-NEAYLIQLLEQK--GL--L-KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred HH--cce-eeeCCC-cHHHHHHHHHHc--CC--C-hHHHHHHHHHCC-CHHHHHHHhC
Confidence 99 874 778865 444444444321 11 1 122334444445 6766666653
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.52 E-value=0.019 Score=56.94 Aligned_cols=109 Identities=22% Similarity=0.279 Sum_probs=71.0
Q ss_pred CCeeEEeccchhhhhh-----c-------cHHHHHHHHHHHHHhhCCC-eEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVL-----V-------GQGARRVRDLFKAAKDRTP-CVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~-----~-------g~~~~~i~~~F~~A~~~~P-~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
+-+|+.++++++.+.. . |..+ ...+..+.+..| ++|+|||+|.+-. .+.+.|
T Consensus 626 ~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka~~------------~v~~~L 690 (857)
T PRK10865 626 DDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKAHP------------DVFNIL 690 (857)
T ss_pred CCcEEEEEhHHhhhhhhHHHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhCCH------------HHHHHH
Confidence 4578999998876421 1 2111 112333333344 8999999987632 245566
Q ss_pred HHHhcCC--C-------CCCCeEEEEecCCCC-------------------------cccHHhhCCCcccEEEEcCCCCH
Q psy10044 71 LAEMDGF--H-------QNEGVVVLGATNRRD-------------------------DLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 71 l~~ld~~--~-------~~~~v~vIatTn~~~-------------------------~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
+..++.- . .-.+.++|+|||... .+.|+|+. |+|..+.|.+++.
T Consensus 691 l~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~ 768 (857)
T PRK10865 691 LQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGE 768 (857)
T ss_pred HHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCH
Confidence 6665421 1 123567889999731 24578888 9999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy10044 117 TGRREILDLYLGK 129 (235)
Q Consensus 117 ~~R~~il~~~l~~ 129 (235)
+....|++.++..
T Consensus 769 edl~~Iv~~~L~~ 781 (857)
T PRK10865 769 QHIASIAQIQLQR 781 (857)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888865
No 183
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.037 Score=48.49 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=73.5
Q ss_pred HHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 26 RVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 26 ~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
.+|++-+.+.. ....|++||++|.+-. ...|.||+.|+... +.++|..|+.++.|-|.+++
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S 172 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS 172 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCH------------HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh
Confidence 56666555532 2357999999998832 34578999988643 34667788899999999999
Q ss_pred CCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCH
Q psy10044 102 PGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTG 149 (235)
Q Consensus 102 pgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~ 149 (235)
|. ..+.|++|+.++-.++++...... ..+.+...++....|--+
T Consensus 173 --Rc-q~i~f~~l~~~~~~~~L~~~~~~~-~~~~~~~~l~~~a~Gs~~ 216 (314)
T PRK07399 173 --RC-QIIPFYRLSDEQLEQVLKRLGDEE-ILNINFPELLALAQGSPG 216 (314)
T ss_pred --hc-eEEecCCCCHHHHHHHHHHhhccc-cchhHHHHHHHHcCCCHH
Confidence 87 589999999999988888764221 112224667776665433
No 184
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.46 E-value=0.0067 Score=49.60 Aligned_cols=116 Identities=17% Similarity=0.311 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhCC-CeEEEEccccccc-cccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc---
Q psy10044 22 QGARRVRDLFKAAKDRT-PCVVFIDEIDSVG-AKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD--- 96 (235)
Q Consensus 22 ~~~~~i~~~F~~A~~~~-P~Il~iDeiD~l~-~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld--- 96 (235)
.....+..+++...... ..||+|||+|.+. ..+ .....+..|...++......++.+|.++.......
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 34566777777776644 4999999999998 211 12445666666666544455555554444322111
Q ss_pred ---HHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc---CCCCCHHHHHhcCCCC
Q psy10044 97 ---KALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV---SKNIDVDTLARGTTGF 147 (235)
Q Consensus 97 ---~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~---~~~~~l~~la~~t~G~ 147 (235)
..+. ||+.. +.+++-+.++..++++..+.... .++.+++.+...|.|.
T Consensus 174 ~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 174 DDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp -TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred cccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 1222 47877 99999999999999999876541 2445566777777664
No 185
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.45 E-value=0.02 Score=54.76 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=98.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHH---HHHHHH----HHh-----hCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARR---VRDLFK----AAK-----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~---i~~~F~----~A~-----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.+.||+..+++...+ .+|.-+.. -...|. ..+ +....+|||||++.|-.. .+..++..+
T Consensus 180 ~~aPvi~~~~p~~~~-LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~--------~q~~Llr~L 250 (637)
T PRK13765 180 KTAPFVDATGAHAGA-LLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLE--------SQQSLLTAM 250 (637)
T ss_pred CCCCEEEeCCCCHHH-cCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHH--------HHHHHHHHH
Confidence 578999999988544 45544321 111222 211 112479999999998321 122222222
Q ss_pred HHH---hcCC------------CCCCCeEEEEecCCC--CcccHHhhCCCccc---EEEEcCC--C-CHHHHHHHHHHHh
Q psy10044 71 LAE---MDGF------------HQNEGVVVLGATNRR--DDLDKALLRPGRFD---IEVNVPP--P-DYTGRREILDLYL 127 (235)
Q Consensus 71 l~~---ld~~------------~~~~~v~vIatTn~~--~~ld~al~rpgRf~---~~i~i~~--P-~~~~R~~il~~~l 127 (235)
-+. +.+. .-.-++.+|+++|.. ..+||+|.. ||. ..++|.. | +.+.+..+++.+-
T Consensus 251 ~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~ia 328 (637)
T PRK13765 251 QEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVA 328 (637)
T ss_pred HhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHH
Confidence 111 0010 001247888888874 578999999 986 6666652 3 4556666665433
Q ss_pred cCc----cCCCCC---HHHHHh---cCCC------CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 128 GKI----VSKNID---VDTLAR---GTTG------FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 128 ~~~----~~~~~~---l~~la~---~t~G------~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+.. ....++ +..+.+ +-.| ...++|..++++|...|..++...++.+|+.+|+.
T Consensus 329 qe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 329 QEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 222 122333 222222 1112 45799999999999999999999999999887764
No 186
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.44 E-value=0.041 Score=49.60 Aligned_cols=75 Identities=27% Similarity=0.537 Sum_probs=56.7
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhc---------CC--CCCCCeEEEEecCCCC-cccHHhhCCCcccE
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD---------GF--HQNEGVVVLGATNRRD-DLDKALLRPGRFDI 107 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld---------~~--~~~~~v~vIatTn~~~-~ld~al~rpgRf~~ 107 (235)
-|+|+||+-.|- ..+++.||.-+. |+ ...-++++|||+|-.+ +|=|-|+. ||..
T Consensus 146 GIlYvDEvnlL~------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~ 211 (423)
T COG1239 146 GILYVDEVNLLD------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGL 211 (423)
T ss_pred CEEEEecccccc------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcc
Confidence 699999997762 335666665543 22 2345799999999643 68888888 9999
Q ss_pred EEEcCCC-CHHHHHHHHHHHhc
Q psy10044 108 EVNVPPP-DYTGRREILDLYLG 128 (235)
Q Consensus 108 ~i~i~~P-~~~~R~~il~~~l~ 128 (235)
.+.+..| +.++|.+|.++-+.
T Consensus 212 ~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 212 EVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred eeeccCCCCHHHHHHHHHHHHH
Confidence 9999877 88899999987664
No 187
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.40 E-value=0.0096 Score=47.53 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHH----hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC--
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-- 77 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A----~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-- 77 (235)
..+++.++++++.. .++.+..+...+-.+ ......||||||||+..... ..+.+-....+.+.||..+++-
T Consensus 32 ~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~-~~~~~v~~~~V~~~LL~~le~g~~ 108 (171)
T PF07724_consen 32 ERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSN-SGGADVSGEGVQNSLLQLLEGGTL 108 (171)
T ss_dssp CCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTT-TTCSHHHHHHHHHHHHHHHHHSEE
T ss_pred ccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccc-cccchhhHHHHHHHHHHHhcccce
Confidence 35899999999887 122223333333222 11112499999999998862 2222223346778888877633
Q ss_pred C-------CCCCeEEEEecCCCCcccHH
Q psy10044 78 H-------QNEGVVVLGATNRRDDLDKA 98 (235)
Q Consensus 78 ~-------~~~~v~vIatTn~~~~ld~a 98 (235)
. +-+++++|+|+|.-......
T Consensus 109 ~d~~g~~vd~~n~ifI~Tsn~~~~~~~~ 136 (171)
T PF07724_consen 109 TDSYGRTVDTSNIIFIMTSNFGAEEIID 136 (171)
T ss_dssp EETTCCEEEGTTEEEEEEESSSTHHHHH
T ss_pred ecccceEEEeCCceEEEecccccchhhh
Confidence 1 12469999999986654433
No 188
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.37 E-value=0.012 Score=46.52 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..++++.+.+.. ...-|++|||+|.+- ....|.||..|+. ...++.+|.+|+.++.|.|.++
T Consensus 85 ~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 85 DQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEE--PPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS--TTTTEEEEEEES-GGGS-HHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcC--CCCCEEEEEEECChHHChHHHH
Confidence 556666555532 235699999999984 3466889999995 4568899999999999999999
Q ss_pred CCCcccEEEEcCC
Q psy10044 101 RPGRFDIEVNVPP 113 (235)
Q Consensus 101 rpgRf~~~i~i~~ 113 (235)
+ |.- .+.|++
T Consensus 151 S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 151 S--RCQ-VIRFRP 160 (162)
T ss_dssp T--TSE-EEEE--
T ss_pred h--hce-EEecCC
Confidence 9 873 566654
No 189
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.019 Score=50.59 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
..|+++-+.+.. ...-|++|||+|.+-. ...|.||+.++. ...++++|.+|+.+..|.|.++
T Consensus 93 d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~------------~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 93 DQIRYLKEEFSKSGVESNKKVYIIEHADKMTA------------SAANSLLKFLEE--PSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred HHHHHHHHHHhhCCcccCceEEEeehHhhhCH------------HHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHH
Confidence 455555544432 2246999999988732 356789999985 4556788889989999999999
Q ss_pred CCCcccEEEEcCCCCHHHHHHHHHH
Q psy10044 101 RPGRFDIEVNVPPPDYTGRREILDL 125 (235)
Q Consensus 101 rpgRf~~~i~i~~P~~~~R~~il~~ 125 (235)
+ |. ..++|.+|+.++-...++.
T Consensus 159 S--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 159 S--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred h--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9 87 4899999999887777654
No 190
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.19 E-value=0.07 Score=46.21 Aligned_cols=99 Identities=16% Similarity=0.256 Sum_probs=67.8
Q ss_pred CCCeEEEEec--CCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCC--C--CC---HHHHHhcCCCCCH
Q psy10044 80 NEGVVVLGAT--NRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSK--N--ID---VDTLARGTTGFTG 149 (235)
Q Consensus 80 ~~~v~vIatT--n~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~--~--~~---l~~la~~t~G~s~ 149 (235)
++.+++|||| |..-.+.+||++ |. +.+++.+++.++-..+++..+... ... + ++ ++.|++ ++.
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~----~a~ 78 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN----YNE 78 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH----hcC
Confidence 4678888877 455689999999 87 589999999999999999998642 011 1 22 444454 677
Q ss_pred HHHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHHHhhCC
Q psy10044 150 ADLENMVNQAALRAAI----DGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~----~~~~~i~~~~~~~al~~~~~~ 186 (235)
+|.+..+|.- ..++. .+...||.+++++++.+....
T Consensus 79 GDaR~aLN~L-E~a~~~~~~~~~~~it~~~~~~~~~~~~~~ 118 (300)
T PRK14700 79 GDCRKILNLL-ERMFLISTRGDEIYLNKELFDQAVGETSRD 118 (300)
T ss_pred CHHHHHHHHH-HHHHhhccccCCCccCHHHHHHHHhHHHhc
Confidence 7887777632 22221 122248999999988766443
No 191
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.16 E-value=0.17 Score=46.87 Aligned_cols=131 Identities=19% Similarity=0.159 Sum_probs=82.0
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC-C-C------CCCCeEEEEecCCCCc---ccHHhhCCCcccEE
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG-F-H------QNEGVVVLGATNRRDD---LDKALLRPGRFDIE 108 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-~-~------~~~~v~vIatTn~~~~---ld~al~rpgRf~~~ 108 (235)
.++|+|||..+. ..+.+.||..|.. . . .-+..++++|||.... ..+|+.. ||-..
T Consensus 109 ~lLfLDEI~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFlir 174 (498)
T PRK13531 109 EIVFLDEIWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIR 174 (498)
T ss_pred cEEeecccccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEE
Confidence 499999996432 3356677777732 1 0 1112344555663221 2249999 99999
Q ss_pred EEcCCCC-HHHHHHHHHHHhcC--c-c--CCCCC-----------------------HHHHHhc---CC---CCCHHHHH
Q psy10044 109 VNVPPPD-YTGRREILDLYLGK--I-V--SKNID-----------------------VDTLARG---TT---GFTGADLE 153 (235)
Q Consensus 109 i~i~~P~-~~~R~~il~~~l~~--~-~--~~~~~-----------------------l~~la~~---t~---G~s~~di~ 153 (235)
+.+|+|+ .++-.+++...... . . ..-++ +-.|+.. +. ..|++--.
T Consensus 175 i~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~ 254 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWK 254 (498)
T ss_pred EECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHH
Confidence 9999996 45657777654221 1 0 00011 1223331 22 37888889
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 154 NMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 154 ~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
++++-|...|...|+..++.+|+. .+..+.+
T Consensus 255 ~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 255 KAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 999999999999999999999999 5555543
No 192
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.037 Score=47.93 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=70.9
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+-.++.+.+++-...- .....++++-+.... ...-|++|||+|.+.. ...|.++..++. +
T Consensus 73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe--p 136 (325)
T COG0470 73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE--P 136 (325)
T ss_pred CCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc--C
Confidence 4577888887765431 234455555444433 2357999999999855 345778888774 4
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILD 124 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~ 124 (235)
..+..+|.+||+++.+-+.+++ |.. .+.|++|+...+....+
T Consensus 137 ~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 5667888899999999999998 874 78888876665555544
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.017 Score=55.99 Aligned_cols=139 Identities=21% Similarity=0.307 Sum_probs=90.4
Q ss_pred CeeEEeccchhhhh------------hccHHHHHHHHHHHHH-hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 5 PDTNHAQGPEFDEV------------LVGQGARRVRDLFKAA-KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 5 ~~~~~v~~s~l~~~------------~~g~~~~~i~~~F~~A-~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
-+++.++-|++.++ |+|=.+ ...+..| +++..|||+||||+.- | -.+.|.||
T Consensus 550 ~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA---------H---pdV~nilL 614 (786)
T COG0542 550 QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA---------H---PDVFNLLL 614 (786)
T ss_pred ccceeechHHHHHHHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc---------C---HHHHHHHH
Confidence 46788888888874 555433 2334444 4444589999999874 2 34888999
Q ss_pred HHhcCC--C-CC------CCeEEEEecCCCC----------------------------cccHHhhCCCcccEEEEcCCC
Q psy10044 72 AEMDGF--H-QN------EGVVVLGATNRRD----------------------------DLDKALLRPGRFDIEVNVPPP 114 (235)
Q Consensus 72 ~~ld~~--~-~~------~~v~vIatTn~~~----------------------------~ld~al~rpgRf~~~i~i~~P 114 (235)
.-||.= . .+ .+.++|+|||--. ...|+++. |+|.+|.|.+.
T Consensus 615 QVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L 692 (786)
T COG0542 615 QVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPL 692 (786)
T ss_pred HHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCC
Confidence 888732 1 11 3589999998421 23567777 99999999999
Q ss_pred CHHHHHHHHHHHhcCc----cCCCCC-------HHHHHhcC--CCCCHHHHHHHHHHHH
Q psy10044 115 DYTGRREILDLYLGKI----VSKNID-------VDTLARGT--TGFTGADLENMVNQAA 160 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~----~~~~~~-------l~~la~~t--~G~s~~di~~l~~~A~ 160 (235)
+.+.-.+|+...+..+ ....+. .+.|+++. +.|-++-|++++++-.
T Consensus 693 ~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 693 SKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 9999999999888654 111111 33444443 3455566666665543
No 194
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.91 E-value=0.014 Score=44.37 Aligned_cols=54 Identities=26% Similarity=0.479 Sum_probs=35.4
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-----------CCC------CeEEEEecCCCC----ccc
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-----------QNE------GVVVLGATNRRD----DLD 96 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~------~v~vIatTn~~~----~ld 96 (235)
.++|++|||++..- ..+++.++..++.-. ... +..+|+|+|..+ .++
T Consensus 65 ~~~il~lDEin~a~------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~ 132 (139)
T PF07728_consen 65 KGGILVLDEINRAP------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELS 132 (139)
T ss_dssp EEEEEEESSCGG--------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTC
T ss_pred ceeEEEECCcccCC------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCC
Confidence 47999999998752 224444444444220 111 389999999998 999
Q ss_pred HHhhCCCcc
Q psy10044 97 KALLRPGRF 105 (235)
Q Consensus 97 ~al~rpgRf 105 (235)
+|+++ ||
T Consensus 133 ~al~~--Rf 139 (139)
T PF07728_consen 133 PALLD--RF 139 (139)
T ss_dssp HHHHT--T-
T ss_pred HHHHh--hC
Confidence 99999 97
No 195
>KOG0745|consensus
Probab=95.85 E-value=0.026 Score=51.13 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=73.0
Q ss_pred CCCeeEEeccchhhh-hhccHH-HHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCC--ccHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFDE-VLVGQG-ARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~-~~~g~~-~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~--~~~~~~~~~ll~~l 74 (235)
.++||...+|..|.. .|+|+. |..|..++..|. +.+.-|+||||+|.+..+..+.... -.-..+-+.||+.+
T Consensus 250 ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKll 329 (564)
T KOG0745|consen 250 LDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLL 329 (564)
T ss_pred hCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHh
Confidence 578999999999886 589965 667788877662 3345899999999999554322111 12245667888888
Q ss_pred cCCC-----C--------------CCCeEEEEecCCCCcccHHhhCCCcc-cEEEEcCCC
Q psy10044 75 DGFH-----Q--------------NEGVVVLGATNRRDDLDKALLRPGRF-DIEVNVPPP 114 (235)
Q Consensus 75 d~~~-----~--------------~~~v~vIatTn~~~~ld~al~rpgRf-~~~i~i~~P 114 (235)
+|-- . ..++++|+.-- -..||.-+-| |. |+.+-|+.|
T Consensus 330 EGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGA-F~~Ldk~I~r--R~~d~slGFg~~ 386 (564)
T KOG0745|consen 330 EGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGA-FVGLDKIISR--RLDDKSLGFGAP 386 (564)
T ss_pred cccEEcccCCCCCCCCCCCeEEEeccceEEEeccc-ccchHHHHHH--hhcchhcccCCC
Confidence 7651 0 12355554333 3468888887 76 577888888
No 196
>PHA02244 ATPase-like protein
Probab=95.76 E-value=0.12 Score=46.28 Aligned_cols=76 Identities=29% Similarity=0.325 Sum_probs=49.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHH-----hcCC-CCCCCeEEEEecCCC-----------C
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE-----MDGF-HQNEGVVVLGATNRR-----------D 93 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~-----ld~~-~~~~~v~vIatTn~~-----------~ 93 (235)
|-.|.+ .+.+++|||+|.+... ....++.++.. .++. ....++.+|+|+|.+ .
T Consensus 174 Ll~A~~-~GgvLiLDEId~a~p~---------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k 243 (383)
T PHA02244 174 FYEAFK-KGGLFFIDEIDASIPE---------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARN 243 (383)
T ss_pred HHHHhh-cCCEEEEeCcCcCCHH---------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCc
Confidence 334433 4689999999987432 22233333321 1111 123578999999973 6
Q ss_pred cccHHhhCCCcccEEEEcCCCCHHHH
Q psy10044 94 DLDKALLRPGRFDIEVNVPPPDYTGR 119 (235)
Q Consensus 94 ~ld~al~rpgRf~~~i~i~~P~~~~R 119 (235)
.+++|++. ||- .|++..|+..+.
T Consensus 244 ~L~~AllD--RFv-~I~~dyp~~~E~ 266 (383)
T PHA02244 244 KIDGATLD--RFA-PIEFDYDEKIEH 266 (383)
T ss_pred ccCHHHHh--hcE-EeeCCCCcHHHH
Confidence 88999999 995 799999984333
No 197
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.093 Score=44.27 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...||++-+.+. ...--|++|+++|.+.. ...|.||+.++. +..++++|..|+.+..|.|.+
T Consensus 71 IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTI 136 (263)
T PRK06581 71 IEQIRKLQDFLSKTSAISGYKVAIIYSAELMNL------------NAANSCLKILED--APKNSYIFLITSRAASIISTI 136 (263)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEechHHhCH------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhH
Confidence 455566555443 23346999999999843 356889999985 566788888899999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
++ |+. .+.+..|+...-.+....++...
T Consensus 137 rS--RCq-~i~~~~p~~~~~~e~~~~~~~p~ 164 (263)
T PRK06581 137 RS--RCF-KINVRSSILHAYNELYSQFIQPI 164 (263)
T ss_pred hh--ceE-EEeCCCCCHHHHHHHHHHhcccc
Confidence 99 874 78999999888888877777655
No 198
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.068 Score=47.11 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHH
Q psy10044 23 GARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKA 98 (235)
Q Consensus 23 ~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~a 98 (235)
+...||++-+.+.. ...-|+++|++|.+-. ...+.+++.++... .++.+|.+|+.++.+.+.
T Consensus 94 ~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 94 KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 35667777766653 2236889999998832 24566777777653 346677799999999999
Q ss_pred hhCCCcccEEEEcCCCCHHHHHHHHHH
Q psy10044 99 LLRPGRFDIEVNVPPPDYTGRREILDL 125 (235)
Q Consensus 99 l~rpgRf~~~i~i~~P~~~~R~~il~~ 125 (235)
+.+ |. ..+.|++|+.++-.+.++.
T Consensus 160 i~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 998 87 4789999999887777654
No 199
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=95.38 E-value=0.096 Score=47.62 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=78.7
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHH---------------HhhCCCeEEEEccccccccccCCCCCCccHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKA---------------AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI 67 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~---------------A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~ 67 (235)
.+.||+.++|+.+.....+. .+|.. .....+..|||||+|.+... ..
T Consensus 189 ~~~~~i~~~c~~~~~~~~~~------~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~------------~q 250 (441)
T PRK10365 189 SEKPLVTLNCAALNESLLES------ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM------------MQ 250 (441)
T ss_pred CCCCeeeeeCCCCCHHHHHH------HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH------------HH
Confidence 35789999998764322211 11211 11223678999999998542 12
Q ss_pred HHHHHHhcCC-----CC----CCCeEEEEecCCCCcccHHhhCCCcccE-------EEEcCCCCHHHHH----HHHHHHh
Q psy10044 68 NQLLAEMDGF-----HQ----NEGVVVLGATNRRDDLDKALLRPGRFDI-------EVNVPPPDYTGRR----EILDLYL 127 (235)
Q Consensus 68 ~~ll~~ld~~-----~~----~~~v~vIatTn~~~~ld~al~rpgRf~~-------~i~i~~P~~~~R~----~il~~~l 127 (235)
..++..++.- .. ..++-+|+||+..- .....+|+|.. .+.+..|...+|. .+++.++
T Consensus 251 ~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l 327 (441)
T PRK10365 251 VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFL 327 (441)
T ss_pred HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHH
Confidence 3344444321 11 12467888886532 23345566642 4555566555554 3555565
Q ss_pred cCc----cC--CCCCHH---HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 128 GKI----VS--KNIDVD---TLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 128 ~~~----~~--~~~~l~---~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
... .. ..++-+ .|....--=..++|+++++.|... .....|+.+++...+
T Consensus 328 ~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 328 QRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYISERELPLAI 386 (441)
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccchHhCchhh
Confidence 442 11 112322 233222112346666666665543 344568888875543
No 200
>KOG0989|consensus
Probab=95.37 E-value=0.37 Score=41.99 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=66.7
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHH
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGR 119 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R 119 (235)
-|++|||+|++..+ .-+.|..-|+.+ ...+.+|..||+++.|+..+.+ |.. .+.|+....+.-
T Consensus 131 KiiIlDEcdsmtsd------------aq~aLrr~mE~~--s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~i 193 (346)
T KOG0989|consen 131 KIIILDECDSMTSD------------AQAALRRTMEDF--SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDI 193 (346)
T ss_pred eEEEEechhhhhHH------------HHHHHHHHHhcc--ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHH
Confidence 69999999999653 235677777764 4567888899999999999999 986 566776666666
Q ss_pred HHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 120 REILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 120 ~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
...|+....+- ..++--++.+++ .|++||+..+.
T Consensus 194 v~rL~~Ia~~E~v~~d~~al~~I~~----~S~GdLR~Ait 229 (346)
T KOG0989|consen 194 VDRLEKIASKEGVDIDDDALKLIAK----ISDGDLRRAIT 229 (346)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH----HcCCcHHHHHH
Confidence 66666665442 223333666777 45556655544
No 201
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.26 Score=42.71 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...+|++-+.+.. ..--|++||++|.+-. ...|.||+.++. +..++++|..|+.++.|.|.+
T Consensus 77 idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTL------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred HHHHHHHHHHHhhCccCCCceEEEEechhhcCH------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHH
Confidence 3445555544432 2236999999999843 245889999985 567789999999999999999
Q ss_pred hCCCcccEEEEcCCC
Q psy10044 100 LRPGRFDIEVNVPPP 114 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P 114 (235)
++ |.. .+.|+++
T Consensus 143 ~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 143 RS--RSL-SIHIPME 154 (290)
T ss_pred Hh--cce-EEEccch
Confidence 99 874 6677654
No 202
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.22 E-value=0.15 Score=44.25 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=51.7
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCC---------C----
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRP---------G---- 103 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rp---------g---- 103 (235)
..+-||+|||+|.+-+. -+.+++..+..+-..+++.+|.+.+. +.|-.++... |
T Consensus 171 ~~~iViiIDdLDR~~~~------------~i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPE------------EIVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred CceEEEEEcchhcCCcH------------HHHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHHHH
Confidence 55899999999998432 12334444443333477777777653 3333333221 0
Q ss_pred --cccEEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 104 --RFDIEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 104 --Rf~~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
-|+..+.+|.|+..+...++...+...
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 378889999999999888888886443
No 203
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.87 E-value=0.074 Score=48.06 Aligned_cols=145 Identities=19% Similarity=0.241 Sum_probs=77.6
Q ss_pred CCeeEEeccchhhhhhccHH------------HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVLVGQG------------ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~------------~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
..||+.++|+.+.+...... ...=..+|++|. --.||+|||..+-.. .-..++
T Consensus 130 ~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~------------~Q~kLl 194 (403)
T COG1221 130 EAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPE------------GQEKLL 194 (403)
T ss_pred CCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHh------------HHHHHH
Confidence 57999999998876432211 111112233332 369999999998542 122344
Q ss_pred HHhcC-----CC----CCCCeEEEEecCCCCcccHHhhC-----CCcccEEEEcCCC--CHHHHHHHHHHHhcCc----c
Q psy10044 72 AEMDG-----FH----QNEGVVVLGATNRRDDLDKALLR-----PGRFDIEVNVPPP--DYTGRREILDLYLGKI----V 131 (235)
Q Consensus 72 ~~ld~-----~~----~~~~v~vIatTn~~~~ld~al~r-----pgRf~~~i~i~~P--~~~~R~~il~~~l~~~----~ 131 (235)
..||. +. ...+|.+|+||| .+++.+++. +-|+...|++|+. -.+++..+.++++... .
T Consensus 195 ~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~ 272 (403)
T COG1221 195 RVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLG 272 (403)
T ss_pred HHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcC
Confidence 44443 21 224688998887 355555544 1145555555544 2344555666666443 1
Q ss_pred -CCCCCHHHHHhcCCCC----CHHHHHHHHHHHHHHHHH
Q psy10044 132 -SKNIDVDTLARGTTGF----TGADLENMVNQAALRAAI 165 (235)
Q Consensus 132 -~~~~~l~~la~~t~G~----s~~di~~l~~~A~~~a~~ 165 (235)
....+..+..+....| ..++|+++|..+...+..
T Consensus 273 ~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 273 LPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred CCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 1111122333222223 458888888888766643
No 204
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.14 Score=44.79 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=70.4
Q ss_pred CCCeeEEeccchhhh-hhccHHHHH-HHHHHHHHh----hCCCeEEEEccccccccccCCCCC--CccHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFDE-VLVGQGARR-VRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~-~~~g~~~~~-i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~l 74 (235)
.++||...++..|.+ .|+|+...| +..+.+.|. +....||||||||.+..+..+.+- +-.-..+-+.||..+
T Consensus 121 LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKii 200 (408)
T COG1219 121 LNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKII 200 (408)
T ss_pred hCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHH
Confidence 478999999999887 699987555 455554441 223489999999999987654421 112345778899999
Q ss_pred cCCCC-------------------CCCeEEEEecCCCCcccHHhhCCCccc-EEEEcCCCC
Q psy10044 75 DGFHQ-------------------NEGVVVLGATNRRDDLDKALLRPGRFD-IEVNVPPPD 115 (235)
Q Consensus 75 d~~~~-------------------~~~v~vIatTn~~~~ld~al~rpgRf~-~~i~i~~P~ 115 (235)
+|--. ..++++|+.-. -..||.-+.+ |.+ ..|-|+...
T Consensus 201 EGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGA-F~GlekiI~~--R~~~~~iGF~a~~ 258 (408)
T COG1219 201 EGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGA-FAGLEKIIKK--RLGKKGIGFGAEV 258 (408)
T ss_pred cCceeccCCCCCCCCCccceEEEcccceeEEeccc-cccHHHHHHH--hccCCcccccccc
Confidence 87621 12344443322 3567777776 553 456666554
No 205
>PF05729 NACHT: NACHT domain
Probab=94.77 E-value=0.26 Score=37.85 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=48.7
Q ss_pred HHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCCcccHHhhCCCcccEEEE
Q psy10044 33 AAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN--RRDDLDKALLRPGRFDIEVN 110 (235)
Q Consensus 33 ~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn--~~~~ld~al~rpgRf~~~i~ 110 (235)
.+....+.+++||.+|.+....... ........+..++.. ... .++-+|.|++ ....+...+.. ...++
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~-~~~~~~~~l~~l~~~--~~~--~~~~liit~r~~~~~~~~~~~~~----~~~~~ 146 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQ-ERQRLLDLLSQLLPQ--ALP--PGVKLIITSRPRAFPDLRRRLKQ----AQILE 146 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhh-HHHHHHHHHHHHhhh--ccC--CCCeEEEEEcCChHHHHHHhcCC----CcEEE
Confidence 3345567899999999998743320 011122233333332 112 2333333433 22223333323 15789
Q ss_pred cCCCCHHHHHHHHHHHhcC
Q psy10044 111 VPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 111 i~~P~~~~R~~il~~~l~~ 129 (235)
+..-+.+++.++++.+++.
T Consensus 147 l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 147 LEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred ECCCCHHHHHHHHHHHhhc
Confidence 9999999999999998864
No 206
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.73 E-value=0.23 Score=43.84 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=71.7
Q ss_pred CCCeeEEeccchhhhhhc-----cHH-------HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVLV-----GQG-------ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~-----g~~-------~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.+.||+.|+|+.+..... |.. ...-...|+.| ....|||||+|.+-.. +...|
T Consensus 49 ~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~------------~Q~~L 113 (329)
T TIGR02974 49 WQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL------------VQEKL 113 (329)
T ss_pred cCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH------------HHHHH
Confidence 357999999986543211 100 00001123433 3579999999998432 22334
Q ss_pred HHHhcCC-----C----CCCCeEEEEecCCC-------CcccHHhhCCCcccEEEEcCCCCHHHH----HHHHHHHhcCc
Q psy10044 71 LAEMDGF-----H----QNEGVVVLGATNRR-------DDLDKALLRPGRFDIEVNVPPPDYTGR----REILDLYLGKI 130 (235)
Q Consensus 71 l~~ld~~-----~----~~~~v~vIatTn~~-------~~ld~al~rpgRf~~~i~i~~P~~~~R----~~il~~~l~~~ 130 (235)
+..++.- . ...++-+|++||.. ..+.+.|.. ||. .+.+..|...+| ..+++.++...
T Consensus 114 l~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~ 190 (329)
T TIGR02974 114 LRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRM 190 (329)
T ss_pred HHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHH
Confidence 4443321 1 12457889998753 234556666 664 344555554444 44555555432
Q ss_pred ----c-C--CCCCHHH---HHhcCCCCCHHHHHHHHHHHHHHH
Q psy10044 131 ----V-S--KNIDVDT---LARGTTGFTGADLENMVNQAALRA 163 (235)
Q Consensus 131 ----~-~--~~~~l~~---la~~t~G~s~~di~~l~~~A~~~a 163 (235)
. . ..++-+. |....--=..++|+++++++...+
T Consensus 191 ~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 191 ARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 1 1 1233222 222221224467777777766543
No 207
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=94.58 E-value=0.92 Score=45.16 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
.|.+.|+.+++-|-..|..+-...++.+|++.|+.-+.
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVK 805 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHH
Confidence 68999999999988888888899999999999976654
No 208
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.57 E-value=0.4 Score=43.89 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=66.2
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----C----CCCCeEEEEecCCCC-------cccHHhhCC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----H----QNEGVVVLGATNRRD-------DLDKALLRP 102 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----~----~~~~v~vIatTn~~~-------~ld~al~rp 102 (235)
+..|||||+|.+... +-..|+..++.- . ...++-+|++|+..- .+.+.|..
T Consensus 229 ~gtl~l~ei~~l~~~------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~- 295 (463)
T TIGR01818 229 GGTLFLDEIGDMPLD------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH- 295 (463)
T ss_pred CCeEEEEchhhCCHH------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH-
Confidence 578999999998542 123333333311 1 112567888887532 23334443
Q ss_pred Cccc-EEEEcCCCC--HHHHHHHHHHHhcCc--c----CCCCCHHHHHhcC-CCC--CHHHHHHHHHHHHHHHHHcCCCC
Q psy10044 103 GRFD-IEVNVPPPD--YTGRREILDLYLGKI--V----SKNIDVDTLARGT-TGF--TGADLENMVNQAALRAAIDGVPH 170 (235)
Q Consensus 103 gRf~-~~i~i~~P~--~~~R~~il~~~l~~~--~----~~~~~l~~la~~t-~G~--s~~di~~l~~~A~~~a~~~~~~~ 170 (235)
|+. ..|++|+.. .++...+++.++... . ...++-+.+.... .++ ..++|++++++|...+ ....
T Consensus 296 -rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~ 371 (463)
T TIGR01818 296 -RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDE 371 (463)
T ss_pred -HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCc
Confidence 443 355555544 445556666666443 1 1123322222221 134 3378888888776543 3356
Q ss_pred CcHHHHHHHH
Q psy10044 171 VTMKYLEYAR 180 (235)
Q Consensus 171 i~~~~~~~al 180 (235)
|+.+++...+
T Consensus 372 i~~~~l~~~~ 381 (463)
T TIGR01818 372 VLVSDLPAEL 381 (463)
T ss_pred ccHHhchHHH
Confidence 8888876554
No 209
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=94.42 E-value=0.2 Score=45.71 Aligned_cols=124 Identities=21% Similarity=0.250 Sum_probs=66.9
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----CC----CCCeEEEEecCCCCcccHHhhCCCcccE--
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----HQ----NEGVVVLGATNRRDDLDKALLRPGRFDI-- 107 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vIatTn~~~~ld~al~rpgRf~~-- 107 (235)
..+|||||+|.+... +...++..++.- .. ..++-+|+|||..- . .+.+.|+|..
T Consensus 238 ~gtl~ld~i~~l~~~------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l 302 (457)
T PRK11361 238 EGTLLLDEIGEMPLV------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFREDL 302 (457)
T ss_pred CCEEEEechhhCCHH------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHH
Confidence 468999999998542 223344444321 11 13478999998532 1 3334455543
Q ss_pred -----EEEcCCCCHHHHHH----HHHHHhcCcc---C---CCCCHH---HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q psy10044 108 -----EVNVPPPDYTGRRE----ILDLYLGKIV---S---KNIDVD---TLARGTTGFTGADLENMVNQAALRAAIDGVP 169 (235)
Q Consensus 108 -----~i~i~~P~~~~R~~----il~~~l~~~~---~---~~~~l~---~la~~t~G~s~~di~~l~~~A~~~a~~~~~~ 169 (235)
.+.+..|...+|.+ +.+.++.+.. . ..++-+ .|....---..++|++++++|... ....
T Consensus 303 ~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~---~~~~ 379 (457)
T PRK11361 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM---NSGP 379 (457)
T ss_pred HHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh---CCCC
Confidence 45666676666654 4445554431 1 123322 233322223457778888776643 3445
Q ss_pred CCcHHHHHHHH
Q psy10044 170 HVTMKYLEYAR 180 (235)
Q Consensus 170 ~i~~~~~~~al 180 (235)
.|+.+++-..+
T Consensus 380 ~i~~~~l~~~~ 390 (457)
T PRK11361 380 IIFSEDLPPQI 390 (457)
T ss_pred cccHHHChHhh
Confidence 68888875444
No 210
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=94.28 E-value=0.12 Score=45.58 Aligned_cols=131 Identities=24% Similarity=0.239 Sum_probs=76.7
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC----CC-------CCCeEEEEecCCCC-------------c
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF----HQ-------NEGVVVLGATNRRD-------------D 94 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~----~~-------~~~v~vIatTn~~~-------------~ 94 (235)
..|++|||+|.+-.. ....+++.|+.- .. +.+.-|+|++|... .
T Consensus 122 ~GiccIDe~dk~~~~------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 122 GGICCIDEFDKMKED------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp TSEEEECTTTT--CH------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred Cceeeecccccccch------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 479999999997431 234455555531 11 23577889998655 5
Q ss_pred ccHHhhCCCcccEEEEc-CCCCHHHHHHHHHHHhcCccCC-------------CCC------HHHHHh------------
Q psy10044 95 LDKALLRPGRFDIEVNV-PPPDYTGRREILDLYLGKIVSK-------------NID------VDTLAR------------ 142 (235)
Q Consensus 95 ld~al~rpgRf~~~i~i-~~P~~~~R~~il~~~l~~~~~~-------------~~~------l~~la~------------ 142 (235)
+++.|++ |||..+.+ ..|+.+.-..+.++.+...... ..+ +-..|+
T Consensus 190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~ 267 (331)
T PF00493_consen 190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAK 267 (331)
T ss_dssp S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCH
T ss_pred cchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHH
Confidence 8999999 99988776 4677776666777666443100 111 001111
Q ss_pred ------------------cCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 143 ------------------GTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 143 ------------------~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.....|.+.|+.+++-|-..|..+-+..++.+|+..|+.-+
T Consensus 268 ~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 268 ELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 11236777888888888878888888889999998887655
No 211
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.27 E-value=0.57 Score=44.03 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=78.3
Q ss_pred CCCeeEEeccchhhhhhc-----cHHHH-------HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVLV-----GQGAR-------RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~-----g~~~~-------~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.+.||+.|+|+.+...+. |.... .-...|+.| ....|||||+|.+... .-..|
T Consensus 246 ~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~------------~Q~~L 310 (534)
T TIGR01817 246 AKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA------------FQAKL 310 (534)
T ss_pred CCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH------------HHHHH
Confidence 357999999987743211 10000 000012222 3578999999998542 22334
Q ss_pred HHHhcCC-----CC----CCCeEEEEecCCCCcccHHhhCCCcc--------c-EEEEcCCCC--HHHHHHHHHHHhcCc
Q psy10044 71 LAEMDGF-----HQ----NEGVVVLGATNRRDDLDKALLRPGRF--------D-IEVNVPPPD--YTGRREILDLYLGKI 130 (235)
Q Consensus 71 l~~ld~~-----~~----~~~v~vIatTn~~~~ld~al~rpgRf--------~-~~i~i~~P~--~~~R~~il~~~l~~~ 130 (235)
+..++.- .. ..++-+|+||+.. +.. +...|+| . ..|.+|+.. .++...+++.++...
T Consensus 311 l~~l~~~~~~~~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~ 387 (534)
T TIGR01817 311 LRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKF 387 (534)
T ss_pred HHHHhcCcEEECCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHH
Confidence 4444321 11 1247888888753 222 2223444 2 345555443 244456667776543
Q ss_pred c-----CCCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 131 V-----SKNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 131 ~-----~~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
. ...++ +..|....--=..++|++++++|... .....|+.+++.
T Consensus 388 ~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~---~~~~~I~~~~l~ 439 (534)
T TIGR01817 388 NRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATL---SRSGTITRSDFS 439 (534)
T ss_pred HHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHHCc
Confidence 1 11222 23333332223557777888777643 334578888875
No 212
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.34 Score=41.33 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPP 114 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P 114 (235)
--|++|+++|.+-. ...|.||+.++. +..++++|..|+.++.+.|.+++ |.. .+.++.+
T Consensus 89 ~KV~II~~ae~m~~------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLNK------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred CEEEEeccHhhhCH------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 47999999999843 356889999985 56778999999999999999999 874 4666665
No 213
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.21 E-value=0.13 Score=46.83 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCCeeEEeccchhhhhhccHH------------HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVLVGQG------------ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~------------~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.+.||+.|+|+.+.+.++... .......|+. .....|||||+|.+... ....+
T Consensus 189 ~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~~------------~q~~l 253 (445)
T TIGR02915 189 KDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLPLN------------LQAKL 253 (445)
T ss_pred CCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCCHH------------HHHHH
Confidence 356899999988743221110 0000011112 23578999999998542 22333
Q ss_pred HHHhcC-----CCC----CCCeEEEEecCCC-------CcccHHhhCCCcccEEEEcCCCCHHHHHH----HHHHHhcCc
Q psy10044 71 LAEMDG-----FHQ----NEGVVVLGATNRR-------DDLDKALLRPGRFDIEVNVPPPDYTGRRE----ILDLYLGKI 130 (235)
Q Consensus 71 l~~ld~-----~~~----~~~v~vIatTn~~-------~~ld~al~rpgRf~~~i~i~~P~~~~R~~----il~~~l~~~ 130 (235)
+..++. ... ..++-+|+||+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++...
T Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~ 330 (445)
T TIGR02915 254 LRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERF 330 (445)
T ss_pred HHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHH
Confidence 333321 111 1257888888754 233344443 443 35566666666665 455555432
Q ss_pred ----c--CCCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 131 ----V--SKNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 131 ----~--~~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
. ...++ +..|....---..++|++++++|... .....|+.+++.
T Consensus 331 ~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~---~~~~~i~~~~l~ 383 (445)
T TIGR02915 331 ARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM---AEGNQITAEDLG 383 (445)
T ss_pred HHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHHcC
Confidence 1 11233 33333332223457888888877643 234567777653
No 214
>KOG1051|consensus
Probab=94.16 E-value=0.18 Score=49.87 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=93.0
Q ss_pred CeeEEeccc--hhhhhhccHHHHHHHHHHHHHh-hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 5 PDTNHAQGP--EFDEVLVGQGARRVRDLFKAAK-DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 5 ~~~~~v~~s--~l~~~~~g~~~~~i~~~F~~A~-~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
..++.++-. ....++-|+.+.+++.+.+.+. .....|||+||++-+.+..++.+ .... ..+|.-+- ...
T Consensus 244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~----~~d~-~nlLkp~L---~rg 315 (898)
T KOG1051|consen 244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG----AIDA-ANLLKPLL---ARG 315 (898)
T ss_pred cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch----HHHH-HHhhHHHH---hcC
Confidence 344444444 3334688999999999999998 45678999999999998765411 1112 22222222 123
Q ss_pred CeEEEEecCCC-----CcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cC----CCCC---HHHHH--hcCC
Q psy10044 82 GVVVLGATNRR-----DDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VS----KNID---VDTLA--RGTT 145 (235)
Q Consensus 82 ~v~vIatTn~~-----~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~----~~~~---l~~la--~~t~ 145 (235)
.+-+||||..- -.=||++-| ||+ .+.++.|+.+.-..||+..-.++ .+ .+.. ...++ ..+.
T Consensus 316 ~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~ 392 (898)
T KOG1051|consen 316 GLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITL 392 (898)
T ss_pred CeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhccc
Confidence 48899988732 256999999 998 67889999888777887766552 11 1111 11222 2344
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy10044 146 GFTGADLENMVNQAALR 162 (235)
Q Consensus 146 G~s~~di~~l~~~A~~~ 162 (235)
.|-+.-...++++|...
T Consensus 393 r~lpd~aidl~dEa~a~ 409 (898)
T KOG1051|consen 393 SFLPDCAIDLEDEAAAL 409 (898)
T ss_pred CcCchhcccHHHHHHHH
Confidence 56666667777776543
No 215
>PRK15115 response regulator GlrR; Provisional
Probab=94.08 E-value=0.5 Score=43.04 Aligned_cols=154 Identities=23% Similarity=0.281 Sum_probs=80.9
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHH---------------hhCCCeEEEEccccccccccCCCCCCccHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAA---------------KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI 67 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A---------------~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~ 67 (235)
.+.||+.++|..+....... .+|-.+ .......|||||+|.|... .-
T Consensus 184 ~~~~f~~i~c~~~~~~~~~~------~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~------------~q 245 (444)
T PRK15115 184 ASKPFIAINCGALPEQLLES------ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP------------LQ 245 (444)
T ss_pred CCCCeEEEeCCCCCHHHHHH------HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH------------HH
Confidence 35799999998764322111 122111 1123468999999998543 22
Q ss_pred HHHHHHhcC-----CCC----CCCeEEEEecCCCCcccHHhhCCCccc-------EEEEcCCCCHHHHHH----HHHHHh
Q psy10044 68 NQLLAEMDG-----FHQ----NEGVVVLGATNRRDDLDKALLRPGRFD-------IEVNVPPPDYTGRRE----ILDLYL 127 (235)
Q Consensus 68 ~~ll~~ld~-----~~~----~~~v~vIatTn~~~~ld~al~rpgRf~-------~~i~i~~P~~~~R~~----il~~~l 127 (235)
..++..++. +.. ..++.+|+||+. +++..+.+ |+|. ..+.+..|...+|.+ +++.++
T Consensus 246 ~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l 322 (444)
T PRK15115 246 VKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLL 322 (444)
T ss_pred HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHc-CCccHHHHHhhceeeecCCChHhccccHHHHHHHHH
Confidence 333333331 111 125788999885 35544433 5662 135566676777743 445555
Q ss_pred cCc---cC---CCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 128 GKI---VS---KNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 128 ~~~---~~---~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
... .. ..++ +..|....---..++|+++++.|... .....|+.+++...+
T Consensus 323 ~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~---~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 323 RQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL---TSSPVISDALVEQAL 381 (444)
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCccChhhhhhhh
Confidence 442 11 1233 33333333223456677777766543 345568888775444
No 216
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.93 E-value=0.27 Score=42.83 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
..-|++||++|.+. ....|.||..++. ....+++|..|+.++.|-|.+++ |.. .++|.+|+.+
T Consensus 90 ~~KvvII~~~e~m~------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~ 152 (299)
T PRK07132 90 QKKILIIKNIEKTS------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQ 152 (299)
T ss_pred CceEEEEecccccC------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHH
Confidence 45799999987763 2345789999986 45567777777788999999998 764 7999999888
Q ss_pred HHHHHHHH
Q psy10044 118 GRREILDL 125 (235)
Q Consensus 118 ~R~~il~~ 125 (235)
+-...+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 77766654
No 217
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.92 E-value=3.3 Score=35.10 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC-CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC--CCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF--HQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~-P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~--~~~ 80 (235)
|+.++.|+-.++.. +-.+++..+... .-|||.||+-- ..+... -..|-..|+|= ...
T Consensus 113 glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------e~gd~~----yK~LKs~LeG~ve~rP 172 (287)
T COG2607 113 GLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLSF-------EEGDDA----YKALKSALEGGVEGRP 172 (287)
T ss_pred CCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCCC-------CCCchH----HHHHHHHhcCCcccCC
Confidence 45566666666543 445555655433 57999998621 111111 22333444443 345
Q ss_pred CCeEEEEecCCCCcccHHhh-C-------------------CCcccEEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 81 EGVVVLGATNRRDDLDKALL-R-------------------PGRFDIEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~-r-------------------pgRf~~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
.+|++-||+|+-..|+.-.. + ..||...+.|.+|++++=..|+..|..+.
T Consensus 173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~ 242 (287)
T COG2607 173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF 242 (287)
T ss_pred CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc
Confidence 68999999998776664332 1 23899999999999999999999998765
No 218
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.88 E-value=0.89 Score=42.55 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCCeeEEeccchhhhhh-----ccHHH-------HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVL-----VGQGA-------RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~-----~g~~~-------~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.+.||+.|+|+.+-+.. +|... ..-...|+.| ....|||||+|.+... +...+
T Consensus 237 ~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~------------~Q~~L 301 (509)
T PRK05022 237 ADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA------------LQAKL 301 (509)
T ss_pred CCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH------------HHHHH
Confidence 45799999998874321 11100 0001124433 3478999999998532 22334
Q ss_pred HHHhcC-----CC----CCCCeEEEEecCCCC-------cccHHhhCCCcccEEEEcCCCCHHHHH----HHHHHHhcCc
Q psy10044 71 LAEMDG-----FH----QNEGVVVLGATNRRD-------DLDKALLRPGRFDIEVNVPPPDYTGRR----EILDLYLGKI 130 (235)
Q Consensus 71 l~~ld~-----~~----~~~~v~vIatTn~~~-------~ld~al~rpgRf~~~i~i~~P~~~~R~----~il~~~l~~~ 130 (235)
+..++. +. ...++-+|++||..- .+.+.|.. |+. .+.+..|...+|. .++++++.+.
T Consensus 302 l~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~ 378 (509)
T PRK05022 302 LRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQN 378 (509)
T ss_pred HHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHH
Confidence 443332 11 113578999998642 23333333 332 3445556555554 3444555432
Q ss_pred ------cCCCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC---CCCcHHHHH
Q psy10044 131 ------VSKNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGV---PHVTMKYLE 177 (235)
Q Consensus 131 ------~~~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~---~~i~~~~~~ 177 (235)
....++ +..|....---..++|++++++|...+..... ..|+.+++.
T Consensus 379 ~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 379 RARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 011233 23333332223568999999998876543211 146666654
No 219
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.86 E-value=0.76 Score=44.17 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCeeEEeccchhhh-----hhccHH----HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHh
Q psy10044 4 HPDTNHAQGPEFDE-----VLVGQG----ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 74 (235)
Q Consensus 4 ~~~~~~v~~s~l~~-----~~~g~~----~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~l 74 (235)
+-||+.|+|+.+-. .++|.. ...-...|+.| ....|||||||.+... +-..|+..+
T Consensus 376 ~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~------------~Q~~Ll~~l 440 (638)
T PRK11388 376 AGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE------------LQSALLQVL 440 (638)
T ss_pred CCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH------------HHHHHHHHH
Confidence 46999999977632 222211 00000112222 3578999999998542 223333333
Q ss_pred cC-----CCCC----CCeEEEEecCCCCcccHHhhCCCcccE-------EEEcCCCCHHHHH----HHHHHHhcCc---c
Q psy10044 75 DG-----FHQN----EGVVVLGATNRRDDLDKALLRPGRFDI-------EVNVPPPDYTGRR----EILDLYLGKI---V 131 (235)
Q Consensus 75 d~-----~~~~----~~v~vIatTn~~~~ld~al~rpgRf~~-------~i~i~~P~~~~R~----~il~~~l~~~---~ 131 (235)
+. +... -++-+|+|||.. + ..+...|+|.. .+.+..|...+|. .+++.++... .
T Consensus 441 ~~~~~~~~~~~~~~~~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~ 517 (638)
T PRK11388 441 KTGVITRLDSRRLIPVDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF 517 (638)
T ss_pred hcCcEEeCCCCceEEeeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh
Confidence 31 1111 147789998853 2 23334455521 3455556555553 4555555433 1
Q ss_pred --CCCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 132 --SKNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 132 --~~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
...++ +..|.+..---..++|+++++.|... .....|+.+++-..+
T Consensus 518 ~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~---~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 518 STRLKIDDDALARLVSYRWPGNDFELRSVIENLALS---SDNGRIRLSDLPEHL 568 (638)
T ss_pred CCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHh---CCCCeecHHHCchhh
Confidence 11222 33333332223457777777776643 234568888876655
No 220
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=0.29 Score=40.02 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhCC-CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCC
Q psy10044 24 ARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRP 102 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~-P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rp 102 (235)
...+|++.+.+.-.. ..-++|+++|.+. ....|.||+.++. +..++++|..|+.+..+.|.+++
T Consensus 39 Vd~iReii~~~~~~~~~~k~iI~~a~~l~------------~~A~NaLLK~LEE--Pp~~~~fiL~t~~~~~llpTI~S- 103 (206)
T PRK08485 39 IEDAKEVIAEAYIAESEEKIIVIAAPSYG------------IEAQNALLKILEE--PPKNICFIIVAKSKNLLLPTIRS- 103 (206)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEchHhhC------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCchHHHh-
Confidence 355666666654321 2334577888763 2356889999985 56778888889999999999999
Q ss_pred CcccE------------EEEcCCCCHHHHHHHHHH
Q psy10044 103 GRFDI------------EVNVPPPDYTGRREILDL 125 (235)
Q Consensus 103 gRf~~------------~i~i~~P~~~~R~~il~~ 125 (235)
|+.. .+.+...+.++-.+.++.
T Consensus 104 -Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 104 -RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred -hheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 7643 355666677777776666
No 221
>KOG2228|consensus
Probab=93.64 E-value=0.24 Score=43.72 Aligned_cols=95 Identities=20% Similarity=0.314 Sum_probs=62.2
Q ss_pred hccHHHHHHHHHHHHHhh-----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC--CCCCCeEEEEecCC
Q psy10044 19 LVGQGARRVRDLFKAAKD-----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF--HQNEGVVVLGATNR 91 (235)
Q Consensus 19 ~~g~~~~~i~~~F~~A~~-----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~--~~~~~v~vIatTn~ 91 (235)
.+|....++..+....+. ..|.|.++||+|.+++-. + +.+|..+=.+ ..+.++.+||.|.+
T Consensus 113 ~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------r---QtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 113 SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------R---QTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------h---hHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 345555556666655543 235667778999997621 1 2333333222 23678999999988
Q ss_pred CCc---ccHHhhCCCcccEE-EEcCCC-CHHHHHHHHHHHh
Q psy10044 92 RDD---LDKALLRPGRFDIE-VNVPPP-DYTGRREILDLYL 127 (235)
Q Consensus 92 ~~~---ld~al~rpgRf~~~-i~i~~P-~~~~R~~il~~~l 127 (235)
.+. |...+.+ ||.+. |++++| ..++=..+++..+
T Consensus 181 ld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 764 5677777 99866 777655 7888888888887
No 222
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=1 Score=43.37 Aligned_cols=121 Identities=10% Similarity=0.169 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhh----------CCCeEEEEccccccccccCCCCCCccHHHHHHHHHH-HhcCCCCCCCeEEEEecC-C
Q psy10044 24 ARRVRDLFKAAKD----------RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLA-EMDGFHQNEGVVVLGATN-R 91 (235)
Q Consensus 24 ~~~i~~~F~~A~~----------~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~-~ld~~~~~~~v~vIatTn-~ 91 (235)
...++.++..|.. ....||||||+|.++... ...+..+|. .... ...+.+|++++ .
T Consensus 171 ~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~---------~~~lq~lLr~~~~e---~~~~pLI~I~TE~ 238 (637)
T TIGR00602 171 IEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD---------TRALHEILRWKYVS---IGRCPLVFIITES 238 (637)
T ss_pred HHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh---------HHHHHHHHHHHhhc---CCCceEEEEecCC
Confidence 3455555655542 246799999999886531 113344444 2211 23333444333 2
Q ss_pred CC--------------cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc---cCCC------CCHHHHHhcCCCCC
Q psy10044 92 RD--------------DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI---VSKN------IDVDTLARGTTGFT 148 (235)
Q Consensus 92 ~~--------------~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~---~~~~------~~l~~la~~t~G~s 148 (235)
+. .|.++++...|. .+|.|++.+..+-...|+..+... ...+ ..+..++. .+
T Consensus 239 ~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~----~s 313 (637)
T TIGR00602 239 LEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ----GC 313 (637)
T ss_pred ccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH----hC
Confidence 21 134788843354 389999999999777777777542 1111 13555555 68
Q ss_pred HHHHHHHHHHHHH
Q psy10044 149 GADLENMVNQAAL 161 (235)
Q Consensus 149 ~~di~~l~~~A~~ 161 (235)
.+|++..++.--.
T Consensus 314 ~GDiRsAIn~LQf 326 (637)
T TIGR00602 314 SGDIRSAINSLQF 326 (637)
T ss_pred CChHHHHHHHHHH
Confidence 8899988885433
No 223
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.54 E-value=0.14 Score=45.82 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=44.1
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC------------CCCcccHHhhCCCccc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN------------RRDDLDKALLRPGRFD 106 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn------------~~~~ld~al~rpgRf~ 106 (235)
|-||||||++-|=. ...+.|-..|+. .---++|.||| .|.-+|..|+. |+
T Consensus 279 pGVLFIDEvHmLDi------------EcFsfLnralEs---~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI------------ECFSFLNRALES---ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL- 340 (398)
T ss_dssp E-EEEEESGGGSBH------------HHHHHHHHHHTS---TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-
T ss_pred cceEEecchhhccH------------HHHHHHHHHhcC---CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-
Confidence 89999999998721 122222233332 11226667777 46788999998 87
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcC
Q psy10044 107 IEVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~~~l~~ 129 (235)
..|...+.+.++-.+|++.....
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~ 363 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKE 363 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHhhhhh
Confidence 57888889999999999988754
No 224
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.52 E-value=0.48 Score=41.69 Aligned_cols=141 Identities=19% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCeeEEeccchhhhh-----hccHHH-------HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEV-----LVGQGA-------RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~-----~~g~~~-------~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.+.||+.|+|+.+-.. ++|... ..-...|+.| ....|||||+|.+... +...+
T Consensus 56 ~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~------------~Q~~L 120 (326)
T PRK11608 56 WQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML------------VQEKL 120 (326)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH------------HHHHH
Confidence 3579999999876321 112110 0001223333 3478999999998532 22334
Q ss_pred HHHhcCC-----CC----CCCeEEEEecCCC-------CcccHHhhCCCccc-EEEEcCCCCHHHH----HHHHHHHhcC
Q psy10044 71 LAEMDGF-----HQ----NEGVVVLGATNRR-------DDLDKALLRPGRFD-IEVNVPPPDYTGR----REILDLYLGK 129 (235)
Q Consensus 71 l~~ld~~-----~~----~~~v~vIatTn~~-------~~ld~al~rpgRf~-~~i~i~~P~~~~R----~~il~~~l~~ 129 (235)
+..++.- .. +.++-+|+||+.. ..+.+.|.. ||. ..|++|+ ..+| ..+++.|+..
T Consensus 121 ~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPp--LReR~eDI~~L~~~fl~~ 196 (326)
T PRK11608 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPP--LRERQSDIMLMAEHFAIQ 196 (326)
T ss_pred HHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCC--hhhhhhhHHHHHHHHHHH
Confidence 4444321 11 1257888888753 345566666 773 3455544 4444 4455566543
Q ss_pred c---cC----CCCCHHHH---HhcCCCCCHHHHHHHHHHHHHH
Q psy10044 130 I---VS----KNIDVDTL---ARGTTGFTGADLENMVNQAALR 162 (235)
Q Consensus 130 ~---~~----~~~~l~~l---a~~t~G~s~~di~~l~~~A~~~ 162 (235)
. .. ..++-+.+ ....-=-..++|++++++|...
T Consensus 197 ~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 197 MCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2 11 12333322 2222222457888888877654
No 225
>PF12846 AAA_10: AAA-like domain
Probab=93.43 E-value=0.24 Score=42.07 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=54.7
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc-----HHhhCCCcccEEEEc
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD-----KALLRPGRFDIEVNV 111 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld-----~al~rpgRf~~~i~i 111 (235)
..|.++++||++.+.... .....+..++.+.. +.++.++.+|..+.+++ ++++. -+...+-+
T Consensus 219 ~~~~~i~iDEa~~~~~~~-------~~~~~~~~~~~~~R----k~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i~~ 285 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNP-------SGAEFLDELLREGR----KYGVGLILATQSPSDLPKSPIEDAILA--NCNTKIIF 285 (304)
T ss_pred CceEEEEeCCcccccccc-------chhhhhhHHHHHHH----hcCCEEEEeeCCHHHHhccchHHHHHH--hCCcEEEe
Confidence 568999999999998753 22335556665544 45678999999999999 89998 88888888
Q ss_pred CCCCHHHHH
Q psy10044 112 PPPDYTGRR 120 (235)
Q Consensus 112 ~~P~~~~R~ 120 (235)
..++.+.+.
T Consensus 286 ~~~~~~~~~ 294 (304)
T PF12846_consen 286 RLEDSDDAE 294 (304)
T ss_pred cCChHHHHH
Confidence 888877666
No 226
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.40 E-value=0.92 Score=42.70 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=79.0
Q ss_pred CCCeeEEeccchhhhhh-----ccHHH--------HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVL-----VGQGA--------RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQ 69 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~-----~g~~~--------~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ 69 (235)
.+-||+.|+|+.+-+.. +|..+ ..-..+|+.| ....|||||+|.+... +-..
T Consensus 262 ~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~------------~Q~~ 326 (526)
T TIGR02329 262 RDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP------------LQTR 326 (526)
T ss_pred CCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH------------HHHH
Confidence 35799999998764321 11100 0011233333 2468999999998532 2233
Q ss_pred HHHHhcC-----CCCC----CCeEEEEecCCCC-------cccHHhhCCCcccEEEEcCCCCHHHHH----HHHHHHhcC
Q psy10044 70 LLAEMDG-----FHQN----EGVVVLGATNRRD-------DLDKALLRPGRFDIEVNVPPPDYTGRR----EILDLYLGK 129 (235)
Q Consensus 70 ll~~ld~-----~~~~----~~v~vIatTn~~~-------~ld~al~rpgRf~~~i~i~~P~~~~R~----~il~~~l~~ 129 (235)
|+..++. +... .++-+|++||..- .+.+.|.- |+. .+.+..|...+|. .+++.|+..
T Consensus 327 Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 327 LLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred HHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHH
Confidence 4433331 1111 2357888887542 12222222 332 2444555555544 455566654
Q ss_pred cc---CCCCCHHH----------HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 130 IV---SKNIDVDT----------LARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 130 ~~---~~~~~l~~----------la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
.. ...++-+. |....-=-..++|+++++++...+.......|+.+++...
T Consensus 404 ~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 404 AAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 31 11122121 2222212245888888888876543223456888886543
No 227
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.17 E-value=1.1 Score=43.61 Aligned_cols=141 Identities=21% Similarity=0.286 Sum_probs=72.9
Q ss_pred CCCeeEEeccchhhhh-----hccH--------HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEV-----LVGQ--------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQ 69 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~-----~~g~--------~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ 69 (235)
.+.||+.++|+.+... .+|. ..... ..|+.| ....|||||+|.+-.. +-..
T Consensus 426 ~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~Ldei~~L~~~------------~Q~~ 489 (686)
T PRK15429 426 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFLDEVGDMPLE------------LQPK 489 (686)
T ss_pred CCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhc---CCCeEEEechhhCCHH------------HHHH
Confidence 4679999999875321 2221 11111 234443 3579999999998432 2233
Q ss_pred HHHHhcC-----CC----CCCCeEEEEecCCCCcccHHhhCCCcccE-------EEEcCCCCHHHHHH----HHHHHhcC
Q psy10044 70 LLAEMDG-----FH----QNEGVVVLGATNRRDDLDKALLRPGRFDI-------EVNVPPPDYTGRRE----ILDLYLGK 129 (235)
Q Consensus 70 ll~~ld~-----~~----~~~~v~vIatTn~~~~ld~al~rpgRf~~-------~i~i~~P~~~~R~~----il~~~l~~ 129 (235)
++..++. .. ...++-+|++|+..- . .+...|+|.. .+.+..|...+|.+ +++.++.+
T Consensus 490 L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l--~-~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~ 566 (686)
T PRK15429 490 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL--K-KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFK 566 (686)
T ss_pred HHHHHHhCCEEeCCCCCcccceEEEEEeCCCCH--H-HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHH
Confidence 4433332 11 124578999987642 1 1222233332 45566666666654 45555544
Q ss_pred c---cC---CCCC---HHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy10044 130 I---VS---KNID---VDTLARGTTGFTGADLENMVNQAALR 162 (235)
Q Consensus 130 ~---~~---~~~~---l~~la~~t~G~s~~di~~l~~~A~~~ 162 (235)
. .. ..++ +..|....-=-..++|++++++|...
T Consensus 567 ~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 567 IARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 3 01 1122 23333332223558888888888764
No 228
>KOG2035|consensus
Probab=93.13 E-value=4.2 Score=35.24 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=78.1
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCC---------eEEEEccccccccccCCCCCCccHHHHHHHHHHHhc
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTP---------CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 75 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P---------~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld 75 (235)
-..+.|++|+--. -..--|+++.+..-+.+| -+++|.|.|.|..+.+ ..|-.-|+
T Consensus 89 ~yHlEitPSDaG~----~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------------~aLRRTME 152 (351)
T KOG2035|consen 89 NYHLEITPSDAGN----YDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------------HALRRTME 152 (351)
T ss_pred cceEEeChhhcCc----ccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH------------HHHHHHHH
Confidence 3445566655321 123345555555433332 5899999999865321 22333344
Q ss_pred CCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCC
Q psy10044 76 GFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTG 146 (235)
Q Consensus 76 ~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G 146 (235)
.+ .++.-+|..+|....+=+++++ |. ..|.+|.|+.++-..++...+.+- ..++.-+.++|+.+.|
T Consensus 153 kY--s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 153 KY--SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HH--hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 43 3455677788999999999998 75 478999999999999999998664 2333346677776554
No 229
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=93.09 E-value=1.8 Score=37.81 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=74.3
Q ss_pred HHHHHHHHhhC----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---cccHHh
Q psy10044 27 VRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD---DLDKAL 99 (235)
Q Consensus 27 i~~~F~~A~~~----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~---~ld~al 99 (235)
+..++..+... .+-+|++++.+.+-. ......+.|...+++... ..++|+.+++.++ .+...+
T Consensus 46 ~~~~~~~~~t~pff~~~rlVvv~~~~~~~~---------~~~~~~~~L~~~l~~~~~-~~~li~~~~~~~d~r~k~~k~l 115 (326)
T PRK07452 46 AIQALNEAMTPPFGSGGRLVWLKNSPLCQG---------CSEELLAELERTLPLIPE-NTHLLLTNTKKPDGRLKSTKLL 115 (326)
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCchhhcc---------CCHHHHHHHHHHHcCCCC-CcEEEEEeCCCcchHHHHHHHH
Confidence 66777776543 246788888654321 112345567777776533 4455555554432 233334
Q ss_pred hCCCcccEEEEcCCC---CHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--cCCCCCc
Q psy10044 100 LRPGRFDIEVNVPPP---DYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAI--DGVPHVT 172 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P---~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~--~~~~~i~ 172 (235)
.. +....++..| +.++...+++..+.+. .-+.-.+..|+.. +|.|+..+.++--..+.- .+...||
T Consensus 116 ~k---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~----~g~dl~~l~~EleKL~ly~~~~~~~It 188 (326)
T PRK07452 116 QK---LAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEA----VGNDSRRLYNELEKLALYAENSTKPIS 188 (326)
T ss_pred HH---ceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----hCccHHHHHHHHHHHHHhccCCCCccC
Confidence 33 3345565544 4455566666666543 1122235555553 445666666655444443 3355689
Q ss_pred HHHHHHHHH
Q psy10044 173 MKYLEYARD 181 (235)
Q Consensus 173 ~~~~~~al~ 181 (235)
.++++..+.
T Consensus 189 ~~~V~~~v~ 197 (326)
T PRK07452 189 AEEVKALVS 197 (326)
T ss_pred HHHHHHHhc
Confidence 888887654
No 230
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=93.05 E-value=0.9 Score=43.89 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 146 GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 146 G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
-.|.++|+.+++-|-..|..+-...++.+|..+|++-+.
T Consensus 555 piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 555 PITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 378999999999998888888999999999999987665
No 231
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=92.58 E-value=1 Score=42.54 Aligned_cols=157 Identities=21% Similarity=0.258 Sum_probs=79.1
Q ss_pred CCCeeEEeccchhhhhh-----ccHHHH--------HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVL-----VGQGAR--------RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQ 69 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~-----~g~~~~--------~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ 69 (235)
.+-||+.|+|+.+-+.. +|..+. .-..+|+.| ....||||||+.+... +-..
T Consensus 277 ~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~------------~Q~k 341 (538)
T PRK15424 277 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP------------LQTR 341 (538)
T ss_pred CCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH------------HHHH
Confidence 35699999998764321 111000 001234443 2468999999998542 2233
Q ss_pred HHHHhcC-----CCC----CCCeEEEEecCCCCcccHHhhCCCcccE-------EEEcCCCCHHHHH----HHHHHHhcC
Q psy10044 70 LLAEMDG-----FHQ----NEGVVVLGATNRRDDLDKALLRPGRFDI-------EVNVPPPDYTGRR----EILDLYLGK 129 (235)
Q Consensus 70 ll~~ld~-----~~~----~~~v~vIatTn~~~~ld~al~rpgRf~~-------~i~i~~P~~~~R~----~il~~~l~~ 129 (235)
|+..++. +.. .-++-+|++||.. +. .+...|+|.. .+.+..|...+|. .+++.++.+
T Consensus 342 Ll~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 342 LLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred HHhhhhcCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence 4444432 111 1246789888753 22 2223344431 3555666655554 355566644
Q ss_pred c---cCCCCCHH----------HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 130 I---VSKNIDVD----------TLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 130 ~---~~~~~~l~----------~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
. ......-+ .|....-=-..++|+++++++...+.......++.+++.
T Consensus 419 ~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 419 SLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 2 11112211 111211113558899999988765433333456766653
No 232
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.56 E-value=0.25 Score=39.99 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=41.4
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPP 114 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P 114 (235)
..++|+|||+..+++.+...... ....+ .++.. .+..+.-+|.+|-.+..||+.+++ +.+.++.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~--~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKK--VPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T------HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCcccccc--chHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 56999999999999988652111 12222 33322 234567888999999999999998 88888877554
No 233
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=92.52 E-value=0.79 Score=42.28 Aligned_cols=153 Identities=25% Similarity=0.348 Sum_probs=80.2
Q ss_pred CCeeEEeccchhhhh-----hccHHH-------HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEV-----LVGQGA-------RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~-----~~g~~~-------~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+-||+.|+|.-+-.. .+|-.+ +.=.-.|+.| ..-.||+|||..+... +-..||
T Consensus 192 ~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl~------------~Q~kLL 256 (464)
T COG2204 192 KGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPLE------------LQVKLL 256 (464)
T ss_pred CCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCHH------------HHHHHH
Confidence 469999999766442 111000 0001123333 2479999999887542 223333
Q ss_pred HHhc-----CCCCC----CCeEEEEecCCCCcccHHhhCCCccc-------EEEEcCCCCHHHHHH----HHHHHhcCc-
Q psy10044 72 AEMD-----GFHQN----EGVVVLGATNRRDDLDKALLRPGRFD-------IEVNVPPPDYTGRRE----ILDLYLGKI- 130 (235)
Q Consensus 72 ~~ld-----~~~~~----~~v~vIatTn~~~~ld~al~rpgRf~-------~~i~i~~P~~~~R~~----il~~~l~~~- 130 (235)
.-++ .+.++ -+|-||+|||. +|...+. .|||- .++.+..|...+|.+ ++++++.+.
T Consensus 257 RvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~ 333 (464)
T COG2204 257 RVLQEREFERVGGNKPIKVDVRIIAATNR--DLEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFA 333 (464)
T ss_pred HHHHcCeeEecCCCcccceeeEEEeecCc--CHHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHH
Confidence 3332 23222 25889999996 3443333 35653 356677777666654 445555442
Q ss_pred -----cCCCCCHHHHHhcCC-CC--CHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 131 -----VSKNIDVDTLARGTT-GF--TGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 131 -----~~~~~~l~~la~~t~-G~--s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
....++-..+...+. .+ ..++|+++++++... .....++.+++-
T Consensus 334 ~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il---~~~~~i~~~~l~ 385 (464)
T COG2204 334 AELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL---SEGPEIEVEDLP 385 (464)
T ss_pred HHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc---CCccccchhhcc
Confidence 223445555555443 23 235666666665543 344456666654
No 234
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.22 E-value=1.9 Score=40.43 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=76.8
Q ss_pred CCeeEEeccchhhhhh-----ccHHH-------HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVL-----VGQGA-------RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~-----~g~~~-------~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+-||+.++|+.+-... +|... ..-..+|+.| ....|||||+|.+... +-..++
T Consensus 255 ~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~------------~Q~~Ll 319 (520)
T PRK10820 255 KKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR------------MQAKLL 319 (520)
T ss_pred CCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH------------HHHHHH
Confidence 4699999998864321 11100 0011234444 2478999999998542 123333
Q ss_pred HHhcC-----CCC----CCCeEEEEecCCCC-------cccHHhhCCCcccEEEEcCCCCHHHHH----HHHHHHhcCc-
Q psy10044 72 AEMDG-----FHQ----NEGVVVLGATNRRD-------DLDKALLRPGRFDIEVNVPPPDYTGRR----EILDLYLGKI- 130 (235)
Q Consensus 72 ~~ld~-----~~~----~~~v~vIatTn~~~-------~ld~al~rpgRf~~~i~i~~P~~~~R~----~il~~~l~~~- 130 (235)
..++. ... ..++-+|+||+.+- .+.+.|.. |+. .+.+..|...+|. .+++.++...
T Consensus 320 ~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~ 396 (520)
T PRK10820 320 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFA 396 (520)
T ss_pred HHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHH
Confidence 33322 111 13577888887642 23345555 654 2555555555554 3444555432
Q ss_pred ---c--CCCCCHHHHHhcCC-CC--CHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Q psy10044 131 ---V--SKNIDVDTLARGTT-GF--TGADLENMVNQAALRAAIDGVPHVTMKYL 176 (235)
Q Consensus 131 ---~--~~~~~l~~la~~t~-G~--s~~di~~l~~~A~~~a~~~~~~~i~~~~~ 176 (235)
. ...++-+.+..... .+ ..++|++++.+|...+ ....|+.+++
T Consensus 397 ~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 397 DEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 1 11233333333222 12 4567777777666432 3446777775
No 235
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=91.71 E-value=5.9 Score=34.52 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=70.0
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc---c---cHHhhCCCcccEEEEcC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD---L---DKALLRPGRFDIEVNVP 112 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~---l---d~al~rpgRf~~~i~i~ 112 (235)
.-++++++.+.+-.+. ....+..+...+ .......++++..++..+. + -.++.. + ...++++
T Consensus 77 ~klvii~~~~~l~~~~--------~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~--~-~~~~~~~ 144 (340)
T PRK05574 77 RKLVELRLPEFLTGAK--------GEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKK--K-AVVVEAQ 144 (340)
T ss_pred CeEEEEECCCCCCchh--------HHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHh--C-ceEEEcC
Confidence 3566677766553211 122334444444 2233334555555553322 1 123333 2 3678889
Q ss_pred CCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 113 PPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 113 ~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.|+..+....++..+... ..+...++.|++. ++.|+..+.++.-..+.-.+...||.++++..+...
T Consensus 145 ~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~----~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~ 213 (340)
T PRK05574 145 PPKEAELPQWIQQRLKQQGLQIDAAALQLLAER----VEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDS 213 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----hCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhh
Confidence 999999999998888664 1222234555553 445666666665555443322228888887766544
No 236
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.46 E-value=0.5 Score=40.55 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=49.9
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhc---CC-CCC-------CCeEEEEecCCCC---cccHHhhCCCc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD---GF-HQN-------EGVVVLGATNRRD---DLDKALLRPGR 104 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld---~~-~~~-------~~v~vIatTn~~~---~ld~al~rpgR 104 (235)
.+|+||||+..-..+.-+. .-..+||.++= |. +.+ .++.+|||.|.+. .+++.++| .
T Consensus 101 ~lv~fiDDlN~p~~d~ygt-------q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGT-------QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp EEEEEEETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred EEEEEecccCCCCCCCCCC-------cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 4799999997755433221 12234554432 22 111 3588888887432 58999999 8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 105 FDIEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 105 f~~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
|. .+.++.|+.+.-..|+..++...
T Consensus 172 f~-i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 172 FN-ILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EE-EEE----TCCHHHHHHHHHHHHH
T ss_pred eE-EEEecCCChHHHHHHHHHHHhhh
Confidence 85 89999999999999999988754
No 237
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=91.29 E-value=0.7 Score=37.39 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHHHHhhCCC--eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 20 VGQGARRVRDLFKAAKDRTP--CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 20 ~g~~~~~i~~~F~~A~~~~P--~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.|.+.+++=.++..+....+ .+++|||.|.-+. +...+.+-.++..+.. .++=||.||..|.-||
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LH--------p~~q~~l~~~l~~~~~----~~~QviitTHSp~ild 303 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLH--------PSWQRKLIELLKELSK----KNIQVIITTHSPFILD 303 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSS--------HHHHHHHHHHHHHTGG----GSSEEEEEES-GGG--
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCC--------HHHHHHHHHHHHhhCc----cCCEEEEeCccchhcC
Confidence 47777777555555544443 9999999998764 2223333344444332 3456788999987665
No 238
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=91.16 E-value=6.9 Score=33.41 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=73.1
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc---ccHHhhCCCcccEEEEcCCCC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD---LDKALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~---ld~al~rpgRf~~~i~i~~P~ 115 (235)
.-++++++.+.+..+ ...+.|+..+... .+..++|..++.++. +-..+..-++ ...+++..|+
T Consensus 47 ~kliii~~~~~~~~~-----------~~~~~L~~~l~~~--~~~~~~i~~~~~~~~~~~~~k~~~~~~~-~~~i~~~~~~ 112 (302)
T TIGR01128 47 RRLVELRNPEGKPGA-----------KGLKALEEYLANP--PPDTLLLIEAPKLDKRKKLTKWLKALKN-AQIVECKTPK 112 (302)
T ss_pred CeEEEEECCCCCCCH-----------HHHHHHHHHHhcC--CCCEEEEEecCCCCHhHHHHHHHHHhcC-eeEEEecCCC
Confidence 468999998876421 1245666666654 234445555553332 1112211012 3578889999
Q ss_pred HHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 116 YTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 116 ~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
..+...+++..+.+. ..+......++..+. .|+..+.++--..+.-.+...||.++++..+...
T Consensus 113 ~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~----~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~ 178 (302)
T TIGR01128 113 EQELPRWIQARLKKLGLRIDPDAVQLLAELVE----GNLLAIAQELEKLALYAPDGKITLEDVEEAVSDS 178 (302)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----cHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhh
Confidence 999999999888664 223333556666543 4555555554444443333368888888776543
No 239
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.08 E-value=1.5 Score=40.23 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=66.6
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----CC----CCCeEEEEecCCC-------CcccHHhhCC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----HQ----NEGVVVLGATNRR-------DDLDKALLRP 102 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vIatTn~~-------~~ld~al~rp 102 (235)
...|||||+|.+... ....|+..++.- .. ..++-+|+||+.. ..+.+.|..
T Consensus 233 ~Gtl~l~~i~~l~~~------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 299 (469)
T PRK10923 233 GGTLFLDEIGDMPLD------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH- 299 (469)
T ss_pred CCEEEEeccccCCHH------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH-
Confidence 468999999998542 223444444321 11 1346888888753 134455665
Q ss_pred CcccEEEEcCCCCHHHHH----HHHHHHhcCc---cC---CCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q psy10044 103 GRFDIEVNVPPPDYTGRR----EILDLYLGKI---VS---KNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGVP 169 (235)
Q Consensus 103 gRf~~~i~i~~P~~~~R~----~il~~~l~~~---~~---~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~ 169 (235)
||. .+.+..|...+|. .+++.++... .. ..++ +..|....---..++|+++++++...+ ...
T Consensus 300 -~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~ 374 (469)
T PRK10923 300 -RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQ 374 (469)
T ss_pred -Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCC
Confidence 663 3444445444444 4666666443 11 1122 333333332335588888888776543 345
Q ss_pred CCcHHHHHHHH
Q psy10044 170 HVTMKYLEYAR 180 (235)
Q Consensus 170 ~i~~~~~~~al 180 (235)
.|+.+++-..+
T Consensus 375 ~i~~~~l~~~~ 385 (469)
T PRK10923 375 EVLIQDLPGEL 385 (469)
T ss_pred cccHHHCcHhh
Confidence 67878775443
No 240
>PRK08116 hypothetical protein; Validated
Probab=90.95 E-value=0.78 Score=39.25 Aligned_cols=104 Identities=14% Similarity=0.238 Sum_probs=54.0
Q ss_pred CCeeEEeccchhhhhhccH----HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~----~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
|.+++.++.++|++.+... +......+++... ...+|+|||+...- ...+.. ..|...++..-
T Consensus 142 ~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~-------~t~~~~---~~l~~iin~r~- 208 (268)
T PRK08116 142 GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER-------DTEWAR---EKVYNIIDSRY- 208 (268)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-------CCHHHH---HHHHHHHHHHH-
Confidence 6778888888887654321 1112223333332 34699999986421 122222 33333344321
Q ss_pred CCCeEEEEecCCC-Cc----ccHHhhCCCcc---cEEEEcCCCCHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRR-DD----LDKALLRPGRF---DIEVNVPPPDYTGRREILD 124 (235)
Q Consensus 80 ~~~v~vIatTn~~-~~----ld~al~rpgRf---~~~i~i~~P~~~~R~~il~ 124 (235)
..+..+|.|||.+ +. ++..+.. |+ ...|.+.-|+. |..+.+
T Consensus 209 ~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 209 RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHH
Confidence 1223466788864 33 4667777 74 34466666653 444443
No 241
>PF13173 AAA_14: AAA domain
Probab=90.58 E-value=2.2 Score=31.84 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEE
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVV 85 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 85 (235)
.+++++..+.......... +.+.|.......+.+|||||++.+- .+...+..+... ..++-+
T Consensus 31 ~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~----------~~~~~lk~l~d~------~~~~~i 92 (128)
T PF13173_consen 31 NILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP----------DWEDALKFLVDN------GPNIKI 92 (128)
T ss_pred cceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc----------cHHHHHHHHHHh------ccCceE
Confidence 4556666555442211111 2233322222367999999998872 234444444442 123444
Q ss_pred EEecCCCCcccHHh--hCCCcccEEEEcCCCCHHH
Q psy10044 86 LGATNRRDDLDKAL--LRPGRFDIEVNVPPPDYTG 118 (235)
Q Consensus 86 IatTn~~~~ld~al--~rpgRf~~~i~i~~P~~~~ 118 (235)
|.|+.....+.... .=+||.. .+++.+.+..|
T Consensus 93 i~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 93 ILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred EEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 44554444332221 2356875 77888877665
No 242
>KOG1969|consensus
Probab=90.56 E-value=5.6 Score=38.80 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=83.2
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhh--------CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD--------RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~--------~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~l 74 (235)
+|.-.+.|++|+=.+ ...++...+.|-+ ..|..|++||||--. ...+..++..+
T Consensus 350 aGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------~~~Vdvilslv 411 (877)
T KOG1969|consen 350 AGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------RAAVDVILSLV 411 (877)
T ss_pred cCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc------------HHHHHHHHHHH
Confidence 467788888888654 2333333333321 459999999998532 23344444443
Q ss_pred cCC-------CC-C--------C---CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCC
Q psy10044 75 DGF-------HQ-N--------E---GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNI 135 (235)
Q Consensus 75 d~~-------~~-~--------~---~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~ 135 (235)
..- .. + . .--+|+.+|. .--|||+.=--|-.+|.|.+|...--.+=|+..+.+- .-..
T Consensus 412 ~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE-~mr~ 488 (877)
T KOG1969|consen 412 KATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE-NMRA 488 (877)
T ss_pred HhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhh-cCCC
Confidence 311 00 0 0 1246667775 4457887322578899999998887776666665442 1123
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q psy10044 136 DVDTLARGTTGFTGADLENMVNQAALRAAI 165 (235)
Q Consensus 136 ~l~~la~~t~G~s~~di~~l~~~A~~~a~~ 165 (235)
|...|...++ ++..||+..+|.--+.+..
T Consensus 489 d~~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 489 DSKALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred CHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 4444444444 6678999999987666654
No 243
>PF14516 AAA_35: AAA-like domain
Probab=90.09 E-value=2.5 Score=37.30 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHHHHHHHHH---hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC---CC----CC-eEEEEecCCCC
Q psy10044 25 RRVRDLFKAA---KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH---QN----EG-VVVLGATNRRD 93 (235)
Q Consensus 25 ~~i~~~F~~A---~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~---~~----~~-v~vIatTn~~~ 93 (235)
......|+.. ....|-||+|||+|.++.... +...|+..+.... .. .+ .++++.+..+.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~----------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ----------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc----------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 3445555532 235699999999999976321 2233444333221 11 12 23333332222
Q ss_pred cccHHh-hCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCC
Q psy10044 94 DLDKAL-LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGF 147 (235)
Q Consensus 94 ~ld~al-~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~ 147 (235)
+.... .+|=.+...|+++.-+.++-..+++.|-... +...++.+-..|.|.
T Consensus 181 -~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 181 -IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--SQEQLEQLMDWTGGH 232 (331)
T ss_pred -cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--CHHHHHHHHHHHCCC
Confidence 22222 3443455678888889999999888774332 222377787888874
No 244
>KOG0482|consensus
Probab=89.09 E-value=3.5 Score=38.57 Aligned_cols=140 Identities=20% Similarity=0.206 Sum_probs=79.9
Q ss_pred eEEEEccccccccccCCCCCCccHHHHH-HHHHHH-hcCCC--CCCCeEEEEecCCCC-------------cccHHhhCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAE-MDGFH--QNEGVVVLGATNRRD-------------DLDKALLRP 102 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~-~~ll~~-ld~~~--~~~~v~vIatTn~~~-------------~ld~al~rp 102 (235)
.|-.|||+|.+....... ...+. ++-++. =-|+. -+.+.-++||+|... .||+||++
T Consensus 441 GICCIDEfDKM~e~DRtA-----IHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS- 514 (721)
T KOG0482|consen 441 GICCIDEFDKMDESDRTA-----IHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS- 514 (721)
T ss_pred ceEeehhhhhhhhhhhHH-----HHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH-
Confidence 578899999986532111 01111 111111 01111 123467788888543 69999999
Q ss_pred CcccEEEEc-CCCCHHHHHHHHHHHhc----Cc-cC---CCCCHHH------HHhcCC----------------------
Q psy10044 103 GRFDIEVNV-PPPDYTGRREILDLYLG----KI-VS---KNIDVDT------LARGTT---------------------- 145 (235)
Q Consensus 103 gRf~~~i~i-~~P~~~~R~~il~~~l~----~~-~~---~~~~l~~------la~~t~---------------------- 145 (235)
|||...-+ ..|+.+.-..+.++... .. .. ..++.+. +++.-.
T Consensus 515 -RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea 593 (721)
T KOG0482|consen 515 -RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREA 593 (721)
T ss_pred -hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99966555 46877766666665431 11 01 1122111 122111
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 146 -------GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 146 -------G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
--|++-|-.+++-+...|..+-...+..+|+.+|+.-+..+
T Consensus 594 ~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 594 RSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred hccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 23567777777766666666667789999999999887765
No 245
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=89.05 E-value=1.7 Score=40.34 Aligned_cols=149 Identities=21% Similarity=0.259 Sum_probs=80.1
Q ss_pred CCeeEEeccchhhhhhc-cHHHHHHHHHHHHHhhCC--------CeEEEEccccccccccCCCCCCccHHHHHHHHHH-H
Q psy10044 4 HPDTNHAQGPEFDEVLV-GQGARRVRDLFKAAKDRT--------PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLA-E 73 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~-g~~~~~i~~~F~~A~~~~--------P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~-~ 73 (235)
.-||++++|+-+-.... .|--.-.+-.|.-|.... ..-||+|||-.+-..- .-.++-.+-+ +
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~l--------QaKLLRvLQegE 345 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLAL--------QAKLLRVLQEGE 345 (550)
T ss_pred CCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHH--------HHHHHHHHhhcc
Confidence 46899999987765421 122223556666664433 3689999997764321 1112222211 2
Q ss_pred hcCCCCCC----CeEEEEecCCCCcccHHhhCCCccc-------EEEEcCCCCHHHHH----HHHHHHhcCc----cC--
Q psy10044 74 MDGFHQNE----GVVVLGATNRRDDLDKALLRPGRFD-------IEVNVPPPDYTGRR----EILDLYLGKI----VS-- 132 (235)
Q Consensus 74 ld~~~~~~----~v~vIatTn~~~~ld~al~rpgRf~-------~~i~i~~P~~~~R~----~il~~~l~~~----~~-- 132 (235)
++.+.++. .|-||||||+ +|-.++.. |+|- ..+.+..|-.-+|. -+.++|+.+. ..
T Consensus 346 ieRvG~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~ 422 (550)
T COG3604 346 IERVGGDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAI 422 (550)
T ss_pred eeecCCCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcc
Confidence 44443333 4899999996 56555554 6763 23444555554443 2333444332 11
Q ss_pred CCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy10044 133 KNID---VDTLARGTTGFTGADLENMVNQAALRA 163 (235)
Q Consensus 133 ~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a 163 (235)
...+ ++.|.+..-==..++|++++++|+..|
T Consensus 423 l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 423 LSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 1112 233333221125699999999999887
No 246
>KOG0478|consensus
Probab=87.36 E-value=9.5 Score=36.95 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=45.8
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHH------hcCC--CCCCCeEEEEecCCCC-------------cccHH
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE------MDGF--HQNEGVVVLGATNRRD-------------DLDKA 98 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~------ld~~--~~~~~v~vIatTn~~~-------------~ld~a 98 (235)
-|-.|||+|++-. ..+.++-+.+++ .-|+ .-+.+--|+|++|... .|+|.
T Consensus 528 GiCCIDEFDKM~d---------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lppt 598 (804)
T KOG0478|consen 528 GICCIDEFDKMSD---------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPT 598 (804)
T ss_pred ceEEchhhhhhhH---------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChh
Confidence 4778999999832 123344443333 0111 1123456889998322 68999
Q ss_pred hhCCCcccEEEEc-CCCCHHHHHHHHHHHhc
Q psy10044 99 LLRPGRFDIEVNV-PPPDYTGRREILDLYLG 128 (235)
Q Consensus 99 l~rpgRf~~~i~i-~~P~~~~R~~il~~~l~ 128 (235)
|++ |||.++-+ ..||...-+.+-.+...
T Consensus 599 LLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 599 LLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred hhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 999 99966544 46666644555554443
No 247
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=87.19 E-value=0.79 Score=37.69 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=24.7
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----------CCCCCeEEEEecC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----------HQNEGVVVLGATN 90 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vIatTn 90 (235)
-|||+||+-.| ...++..|..-++.= ....+.++|+|+|
T Consensus 108 GVLflDE~~ef------------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 108 GVLFLDELNEF------------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp SEEEECETTTS-------------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-
T ss_pred CEEEechhhhc------------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEec
Confidence 79999998655 355777777776421 1123578999988
No 248
>KOG0480|consensus
Probab=86.89 E-value=4.5 Score=38.78 Aligned_cols=139 Identities=18% Similarity=0.180 Sum_probs=83.4
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-------CCCCeEEEEecCCCC-------------cccHH
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-------QNEGVVVLGATNRRD-------------DLDKA 98 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-------~~~~v~vIatTn~~~-------------~ld~a 98 (235)
.-|-.|||+|.+-.+. ...+...+=.+--.+. -+.+--+|||+|... .+.++
T Consensus 443 nGICCIDEFDKMd~~d--------qvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msAp 514 (764)
T KOG0480|consen 443 NGICCIDEFDKMDVKD--------QVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAP 514 (764)
T ss_pred CceEEechhcccChHh--------HHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCch
Confidence 3588899999985421 1222222222211111 122345778887543 58899
Q ss_pred hhCCCcccEEE-EcCCCCHHHHHHHHHHHhcCc--cCCC------CC-----------------------------HHHH
Q psy10044 99 LLRPGRFDIEV-NVPPPDYTGRREILDLYLGKI--VSKN------ID-----------------------------VDTL 140 (235)
Q Consensus 99 l~rpgRf~~~i-~i~~P~~~~R~~il~~~l~~~--~~~~------~~-----------------------------l~~l 140 (235)
+++ |||..+ -+.-||+..-..|-++.+... .... .. +..|
T Consensus 515 imS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~l 592 (764)
T KOG0480|consen 515 IMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGL 592 (764)
T ss_pred hhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHH
Confidence 999 999543 345677766666655554321 0000 00 0011
Q ss_pred --------HhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 141 --------ARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 141 --------a~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
.+.+.+.|.++|+.+++-+-..|..+-...+|.++.++|.+-+..+.
T Consensus 593 R~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 593 RQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred HHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 11134688999999999887778777888899999999987776543
No 249
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=86.82 E-value=1.2 Score=33.83 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC---------CCCCCeEEEEecCCCC-----cccHHhhCCCcc
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF---------HQNEGVVVLGATNRRD-----DLDKALLRPGRF 105 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~---------~~~~~v~vIatTn~~~-----~ld~al~rpgRf 105 (235)
.|+++|||-..- -++-+.+|+.|..- .-..+.+||||-|..+ .|++|++. ||
T Consensus 64 ~ill~DEiNrap------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 64 NILLADEINRAP------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp SEEEEETGGGS-------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ceeeecccccCC------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 599999986543 23445566655421 2235689999999776 78999988 87
No 250
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=86.07 E-value=3.4 Score=34.99 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCC
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPG 103 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpg 103 (235)
+...+.+.+..+ ..+++|+||+++... .+..+...+... ..+.-+|.||.... +-.....
T Consensus 88 ~~~~~~l~~~L~-~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~~~kilvTTR~~~-v~~~~~~-- 147 (287)
T PF00931_consen 88 EELQDQLRELLK-DKRCLLVLDDVWDEE--------------DLEELREPLPSF--SSGSKILVTTRDRS-VAGSLGG-- 147 (287)
T ss_dssp HHHHHHHHHHHC-CTSEEEEEEEE-SHH--------------HH-------HCH--HSS-EEEEEESCGG-GGTTHHS--
T ss_pred ccccccchhhhc-cccceeeeeeecccc--------------cccccccccccc--cccccccccccccc-ccccccc--
Confidence 334444444444 448999999987642 122222222221 22345666877643 2222222
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCcc----CC-CCCHHHHHhcCCCCCHHHHHHH
Q psy10044 104 RFDIEVNVPPPDYTGRREILDLYLGKIV----SK-NIDVDTLARGTTGFTGADLENM 155 (235)
Q Consensus 104 Rf~~~i~i~~P~~~~R~~il~~~l~~~~----~~-~~~l~~la~~t~G~s~~di~~l 155 (235)
-...++++..+.++-.++|+....... .. .....++++.+.| .|--|..+
T Consensus 148 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 148 -TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp -CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred -ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 157899999999999999999976542 11 2225678888876 44444444
No 251
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=85.70 E-value=7.6 Score=30.68 Aligned_cols=89 Identities=20% Similarity=0.356 Sum_probs=43.7
Q ss_pred CCCeeEEeccchhhhh-----hccHHH-------HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEV-----LVGQGA-------RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~-----~~g~~~-------~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~l 70 (235)
.+-||+.|+|+.+-.. .+|... ..-..+|+.|. .-.|||||||.|... ...-+-.+
T Consensus 49 ~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~---~GtL~Ld~I~~L~~~---------~Q~~Ll~~ 116 (168)
T PF00158_consen 49 KNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN---GGTLFLDEIEDLPPE---------LQAKLLRV 116 (168)
T ss_dssp TTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT---TSEEEEETGGGS-HH---------HHHHHHHH
T ss_pred ccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc---ceEEeecchhhhHHH---------HHHHHHHH
Confidence 3579999999877432 122100 00113455553 379999999998542 22222233
Q ss_pred HHH--hcCCCC----CCCeEEEEecCCCCcccHHhhCCCccc
Q psy10044 71 LAE--MDGFHQ----NEGVVVLGATNRRDDLDKALLRPGRFD 106 (235)
Q Consensus 71 l~~--ld~~~~----~~~v~vIatTn~~~~ld~al~rpgRf~ 106 (235)
|.. ...+.. ..++-+|++|+. ++...+. .|+|.
T Consensus 117 l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~-~g~fr 155 (168)
T PF00158_consen 117 LEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVE-QGRFR 155 (168)
T ss_dssp HHHSEEECCTSSSEEE--EEEEEEESS---HHHHHH-TTSS-
T ss_pred HhhchhccccccccccccceEEeecCc--CHHHHHH-cCCCh
Confidence 322 111111 236899999985 4444333 35664
No 252
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=85.16 E-value=6.1 Score=33.06 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=56.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhc-CCCC--
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD-GFHQ-- 79 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld-~~~~-- 79 (235)
.|.+++..+|++-.+ ...+.++|.-+-.. .+.+.|||++.+-. ..-.++.+.+..+. .+..
T Consensus 56 lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~---------~vLS~i~~~i~~i~~al~~~~ 119 (231)
T PF12774_consen 56 LGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE---------EVLSVISQQIQSIQDALRAKQ 119 (231)
T ss_dssp TT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH---------HHHHHHHHHHHHHHHHHHCTS
T ss_pred hCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH---------HHHHHHHHHHHHHHHhhcccc
Confidence 477888999888665 57888888887765 49999999998832 12223333232221 1111
Q ss_pred ------------CCCeEEEEecC----CCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHH
Q psy10044 80 ------------NEGVVVLGATN----RRDDLDKALLRPGRFDIEVNVPPPDYTGRREILD 124 (235)
Q Consensus 80 ------------~~~v~vIatTn----~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~ 124 (235)
+...-++.|.| .-..||+.|+. -| +-+.+..||...-.+++-
T Consensus 120 ~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 120 KSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp SEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHHHH
T ss_pred cccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHHHH
Confidence 12234455665 23579999987 66 689999999877666643
No 253
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=84.78 E-value=3.4 Score=36.97 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=55.0
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC---------CCCeEEEEecCCC-------CcccHHhhCCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ---------NEGVVVLGATNRR-------DDLDKALLRPG 103 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~---------~~~v~vIatTn~~-------~~ld~al~rpg 103 (235)
.|+-|+|+++.- ...++.||+.++.-+- .-..++|++||.. ....+||++
T Consensus 238 Gi~~f~Ei~K~~------------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d-- 303 (361)
T smart00763 238 GILEFVEMFKAD------------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD-- 303 (361)
T ss_pred ceEEEeehhcCC------------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--
Confidence 677777776642 3467778877763311 1136889999987 367899999
Q ss_pred cccEEEEcCCC-CHHHHHHHHHHHhcC
Q psy10044 104 RFDIEVNVPPP-DYTGRREILDLYLGK 129 (235)
Q Consensus 104 Rf~~~i~i~~P-~~~~R~~il~~~l~~ 129 (235)
|+. .|+++.| +..+-.+|.++.+..
T Consensus 304 R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 304 RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 998 8999987 777888899888864
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=84.57 E-value=2.3 Score=32.17 Aligned_cols=79 Identities=15% Similarity=0.341 Sum_probs=41.1
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeE
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 84 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 84 (235)
.+|+.++|..+- .++++.+ .+..|||+|+|.+... ....+..++...+ +.++-
T Consensus 50 ~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~---------~Q~~L~~~l~~~~----~~~~R 102 (138)
T PF14532_consen 50 GPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE---------AQRRLLDLLKRQE----RSNVR 102 (138)
T ss_dssp S-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH---------HHHHHHHHHHHCT----TTTSE
T ss_pred CCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH---------HHHHHHHHHHhcC----CCCeE
Confidence 356666665532 3455555 5689999999998432 2233334444322 33445
Q ss_pred EEEecCC-CC------cccHHhhCCCccc-EEEEcC
Q psy10044 85 VLGATNR-RD------DLDKALLRPGRFD-IEVNVP 112 (235)
Q Consensus 85 vIatTn~-~~------~ld~al~rpgRf~-~~i~i~ 112 (235)
+|+++.. ++ .+++.|.. ||. ..|.+|
T Consensus 103 lI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lP 136 (138)
T PF14532_consen 103 LIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLP 136 (138)
T ss_dssp EEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE-
T ss_pred EEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCC
Confidence 5555543 22 35666665 554 444444
No 255
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=84.44 E-value=1.6 Score=40.10 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhh----CCC-eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHH
Q psy10044 24 ARRVRDLFKAAKD----RTP-CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKA 98 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P-~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~a 98 (235)
-..+.++|+..=. -+| -|+||||.|.|+.+.. +.++ .-++++-.+-+...|-|...|-+|.+||..
T Consensus 236 LwLLsELfe~LPEvGD~dkPklVfFfDEAHLLF~da~--------kall-~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~ 306 (502)
T PF05872_consen 236 LWLLSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDAP--------KALL-DKIEQVVRLIRSKGVGVYFVTQNPTDIPDD 306 (502)
T ss_pred HHHHHHHHHhCccCCCCCCceEEEEEechhhhhcCCC--------HHHH-HHHHHHHHHhhccCceEEEEeCCCCCCCHH
Confidence 4557777877632 234 4677999999996432 1122 223333333456788889999999999999
Q ss_pred hhCCCcccEEE--EcCCCCHHHHHHH
Q psy10044 99 LLRPGRFDIEV--NVPPPDYTGRREI 122 (235)
Q Consensus 99 l~rpgRf~~~i--~i~~P~~~~R~~i 122 (235)
++. -+...| -+..-+..+++.+
T Consensus 307 VL~--QLGnrIQHaLRAfTP~DqKav 330 (502)
T PF05872_consen 307 VLG--QLGNRIQHALRAFTPKDQKAV 330 (502)
T ss_pred HHH--hhhhHHHHHHhcCCHhHHHHH
Confidence 997 555444 3444444555444
No 256
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=83.77 E-value=3.5 Score=30.26 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEec
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatT 89 (235)
....+.+.+........+|+|||+|.+. + ...++.+...++ ..+-+++++|+.
T Consensus 73 ~~l~~~~~~~l~~~~~~~lviDe~~~l~-~----------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 DELRSLLIDALDRRRVVLLVIDEADHLF-S----------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEETTHHHH-T----------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChHhcC-C----------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3444555555566655699999999975 1 345566655555 233345555554
No 257
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=2.3 Score=39.32 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=41.4
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----------CCCCCeEEEEecCC-----------------
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----------HQNEGVVVLGATNR----------------- 91 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vIatTn~----------------- 91 (235)
-|||+||+-.+ .+.+++.|-.=|+.= ....++.+|+++|-
T Consensus 285 GVLFLDElpef------------~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~ 352 (490)
T COG0606 285 GVLFLDELPEF------------KRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSP 352 (490)
T ss_pred CEEEeeccchh------------hHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCH
Confidence 69999998554 234555555444321 01124677888873
Q ss_pred ------CCcccHHhhCCCcccEEEEcCCCCHHH
Q psy10044 92 ------RDDLDKALLRPGRFDIEVNVPPPDYTG 118 (235)
Q Consensus 92 ------~~~ld~al~rpgRf~~~i~i~~P~~~~ 118 (235)
...|-..+++ |||..++++.++..+
T Consensus 353 ~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e 383 (490)
T COG0606 353 RQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGE 383 (490)
T ss_pred HHHHHHHHHhhHHHHh--hhhheecccCCCHHH
Confidence 1356677888 999999999876443
No 258
>KOG1051|consensus
Probab=82.42 E-value=4.7 Score=40.28 Aligned_cols=73 Identities=26% Similarity=0.320 Sum_probs=47.5
Q ss_pred CeeEEeccchhhh---------hhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhc
Q psy10044 5 PDTNHAQGPEFDE---------VLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 75 (235)
Q Consensus 5 ~~~~~v~~s~l~~---------~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld 75 (235)
-.|+.|+.++|.+ .|+|..+ ...+.+..++..-|||+|||||.- + -.+.+.|+..+|
T Consensus 620 ~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA---------h---~~v~n~llq~lD 685 (898)
T KOG1051|consen 620 ENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA---------H---PDVLNILLQLLD 685 (898)
T ss_pred cceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc---------C---HHHHHHHHHHHh
Confidence 3577888876443 2555443 335666666666699999999873 2 236676777766
Q ss_pred CCC---------CCCCeEEEEecCC
Q psy10044 76 GFH---------QNEGVVVLGATNR 91 (235)
Q Consensus 76 ~~~---------~~~~v~vIatTn~ 91 (235)
.-. +-.+++||+|+|.
T Consensus 686 ~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 686 RGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred cCccccCCCcEeeccceEEEEeccc
Confidence 431 1246999999885
No 259
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=82.11 E-value=5.8 Score=37.31 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=85.9
Q ss_pred CCeeEEeccchhhhhhcc-HHHHHHHHHHHHHhhC-C--------CeEEEEccccccccccCCCCCCccHHHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVLVG-QGARRVRDLFKAAKDR-T--------PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 73 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g-~~~~~i~~~F~~A~~~-~--------P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ 73 (235)
+-||+.++|+-+=....- +--..-+-.|.-|.+. + .--||+|||-.+-. .+-..||.-
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl------------~LQaKLLRV 363 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL------------PLQAKLLRV 363 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH------------HHHHHHHHH
Confidence 569999999655432111 1111223345555442 2 25799999977632 233444444
Q ss_pred hc-----CCCC----CCCeEEEEecCCCCcccHHhhCCCccc-------EEEEcCCCCHHHHHH----HHHHHhcCc---
Q psy10044 74 MD-----GFHQ----NEGVVVLGATNRRDDLDKALLRPGRFD-------IEVNVPPPDYTGRRE----ILDLYLGKI--- 130 (235)
Q Consensus 74 ld-----~~~~----~~~v~vIatTn~~~~ld~al~rpgRf~-------~~i~i~~P~~~~R~~----il~~~l~~~--- 130 (235)
++ .+.+ .-.|-+|||||+ .+-.+ +.-|+|- .++.+..|-.-+|.+ +..+++.+.
T Consensus 364 LQEkei~rvG~t~~~~vDVRIIAATN~--nL~~~-i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~ 440 (560)
T COG3829 364 LQEKEIERVGGTKPIPVDVRIIAATNR--NLEKM-IAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRR 440 (560)
T ss_pred HhhceEEecCCCCceeeEEEEEeccCc--CHHHH-HhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHH
Confidence 33 2222 235999999996 33333 3446764 245556666555543 334444432
Q ss_pred ---cCCCCCHHH---HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-HHHHHh
Q psy10044 131 ---VSKNIDVDT---LARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE-YARDKV 183 (235)
Q Consensus 131 ---~~~~~~l~~---la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~-~al~~~ 183 (235)
....+.-+. |.+.--==..++|++++.+++. ...+...|+..|+- .+++..
T Consensus 441 ~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~--~~~~~~~I~~~~lp~~~l~~k 498 (560)
T COG3829 441 YGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN--LVESDGLIDADDLPAFALEEK 498 (560)
T ss_pred cCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh--ccCCcceeehhhcchhhhccc
Confidence 112233222 2222111255899999999886 33444558888776 555544
No 260
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=80.96 E-value=7.3 Score=36.59 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=58.9
Q ss_pred CeEEEEecCC---CCcccHHhhCCCcccEEEEcCC--CCHHHHHHHHHHHhcC----ccCCCCCHHH-------HHhcCC
Q psy10044 82 GVVVLGATNR---RDDLDKALLRPGRFDIEVNVPP--PDYTGRREILDLYLGK----IVSKNIDVDT-------LARGTT 145 (235)
Q Consensus 82 ~v~vIatTn~---~~~ld~al~rpgRf~~~i~i~~--P~~~~R~~il~~~l~~----~~~~~~~l~~-------la~~t~ 145 (235)
+|++||.-.. ....||.+.. .|....+|.. |-.++-..-+-.++.. .....++-.. .++..+
T Consensus 388 KVILiG~~~~y~~L~~~D~dF~~--lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q 465 (509)
T PF13654_consen 388 KVILIGDRELYYLLYEYDPDFYK--LFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARLDQ 465 (509)
T ss_dssp EEEEEE-TTHHHHS-HHHHHHHH--HHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHCC-
T ss_pred EEEEEcCHHHHHHHHHhCHHHHh--CCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4788887665 5578999998 8877777752 4333333333333332 2233344222 233322
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 146 ---GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 146 ---G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
-....+|..++.+|...|..++...|+.+++.+|++...
T Consensus 466 ~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r~ 507 (509)
T PF13654_consen 466 DKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEERR 507 (509)
T ss_dssp SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH--
T ss_pred CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHccc
Confidence 257789999999999999999999999999999998753
No 261
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=80.45 E-value=8.7 Score=38.10 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=58.2
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHH---hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAA---KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A---~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
.+++.++..+|.+.-.... -.+.-+|... ....|.++++||....+.. ......+..++..+. +.
T Consensus 607 ~~~~~fdl~~l~~~~~~~~-~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~-------~~~~~~i~~~lk~~R----K~ 674 (800)
T PRK13898 607 ARVFGFEMGELLKDPVSLA-PVLLYLFHRISISLDGTPSMIVLDEAWALIDN-------PVFAPKIKDWLKVLR----KL 674 (800)
T ss_pred CcEEEEEchhhcCChhhHH-HHHHHHHHHHHHHhcCCCcEEEEeCChhhCCC-------HHHHHHHHHHHHHHH----Hc
Confidence 4677888888876422222 2333444443 2456999999999888752 122334444554443 23
Q ss_pred CeEEEEecCCCCccc-----HHhhCCCcccEEEEcCCCCHH
Q psy10044 82 GVVVLGATNRRDDLD-----KALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 82 ~v~vIatTn~~~~ld-----~al~rpgRf~~~i~i~~P~~~ 117 (235)
+..++.+|..++++. ++++. -....|.+|.|+..
T Consensus 675 ~~~~i~~TQ~~~d~~~s~~~~~i~~--~~~t~I~lpn~~a~ 713 (800)
T PRK13898 675 NTFVIFATQSVEDASKSAISDTLVQ--QTATQIFLPNLKAT 713 (800)
T ss_pred CCEEEEEeCCHHHHHhChhHHHHHH--hCCeEEEcCChhhH
Confidence 446777887776543 45555 56667888766543
No 262
>KOG0732|consensus
Probab=79.55 E-value=1.5 Score=44.29 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=63.2
Q ss_pred Eeccchhhhhh-ccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEE
Q psy10044 9 HAQGPEFDEVL-VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLG 87 (235)
Q Consensus 9 ~v~~s~l~~~~-~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIa 87 (235)
...-+.+++.. .+..+..|..+|..|++..||||||.++|.-....... ....|+..++.......|..+-
T Consensus 623 s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s--------~~~~~~~~l~~~~~~t~i~e~~ 694 (1080)
T KOG0732|consen 623 SLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVS--------FLEEFLSSLDEKALSTPILELH 694 (1080)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcch--------hhhcchhcchhhhhccchhhhc
Confidence 33444555444 66778999999999999999999999999876544322 3344554455433333333332
Q ss_pred ecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC
Q psy10044 88 ATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 88 tTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~ 129 (235)
+-+.-+. ..- .....+..|+.+.+...++..+..
T Consensus 695 t~~~~~~---~~~-----~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 695 TWDTSFE---SVN-----KSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred ccccccc---ccC-----ccccccccchhhhhHHHHHHHHHH
Confidence 2111100 000 134566778888888777777644
No 263
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=79.01 E-value=4 Score=30.76 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=35.4
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCC--CCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
+..+..+....|.+++|||+..+...... ..........+..+...+. +.++.+|.+++...
T Consensus 75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 75 SKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred HHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 34456667788999999999998754321 1112223344444444443 23556666665544
No 264
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.84 E-value=5.8 Score=33.49 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=43.5
Q ss_pred CCeeEEeccchhhhhhccH---HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQ---GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~---~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
|...+.++.+++.+...+. .......+++... ...+|+|||++.... +.+...++..++..- ..
T Consensus 127 g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~-------s~~~~~~l~~Ii~~R----y~ 193 (244)
T PRK07952 127 GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE-------SRYEKVIINQIVDRR----SS 193 (244)
T ss_pred CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-------CHHHHHHHHHHHHHH----Hh
Confidence 5667788888888654332 1122334444443 468999999988531 233444555555442 22
Q ss_pred CCeEEEEecCCC
Q psy10044 81 EGVVVLGATNRR 92 (235)
Q Consensus 81 ~~v~vIatTn~~ 92 (235)
.+.-+|.|||..
T Consensus 194 ~~~~tiitSNl~ 205 (244)
T PRK07952 194 SKRPTGMLTNSN 205 (244)
T ss_pred CCCCEEEeCCCC
Confidence 233566788864
No 265
>KOG1968|consensus
Probab=77.37 E-value=3.8 Score=40.93 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=65.0
Q ss_pred EEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHH
Q psy10044 41 VVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRR 120 (235)
Q Consensus 41 Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~ 120 (235)
||+|||+|.++. ...+ .-..++.++. +...-+|.++|.-+........ |-+..++|+.|+..++.
T Consensus 431 vil~devD~~~~-~dRg-----~v~~l~~l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~ 495 (871)
T KOG1968|consen 431 LILMDEVDGMFG-EDRG-----GVSKLSSLCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIR 495 (871)
T ss_pred EEEEeccccccc-hhhh-----hHHHHHHHHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHH
Confidence 999999999987 2111 1122333333 2334566777776665553443 43467899999999888
Q ss_pred HHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 121 EILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 121 ~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
.-+..++... ...+-.++++.+. +++||++.+..-..
T Consensus 496 ~ri~si~~se~~ki~~~~l~~~s~~----~~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 496 SRIMSICKSEGIKISDDVLEEISKL----SGGDIRQIIMQLQF 534 (871)
T ss_pred hhhhhhhcccceecCcHHHHHHHHh----cccCHHHHHHHHhh
Confidence 7777666443 3344457888885 48999888876443
No 266
>PRK04841 transcriptional regulator MalT; Provisional
Probab=77.13 E-value=19 Score=35.85 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=57.5
Q ss_pred HHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH-HhhCCC
Q psy10044 26 RVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK-ALLRPG 103 (235)
Q Consensus 26 ~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~-al~rpg 103 (235)
.+..++..... ..|.+|+|||++.+-. ......+..|+..+. .++.+|.++.....++- .+...
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~--------~~~~~~l~~l~~~~~-----~~~~lv~~sR~~~~~~~~~l~~~- 173 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITN--------PEIHEAMRFFLRHQP-----ENLTLVVLSRNLPPLGIANLRVR- 173 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCC--------hHHHHHHHHHHHhCC-----CCeEEEEEeCCCCCCchHhHHhc-
Confidence 34444444333 6799999999998731 122335555554432 33344335544222221 22211
Q ss_pred cccEEEEcC----CCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCH
Q psy10044 104 RFDIEVNVP----PPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTG 149 (235)
Q Consensus 104 Rf~~~i~i~----~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~ 149 (235)
+..+++. .-+.++-.+++...+... .+..++..+.+.|+|.-.
T Consensus 174 --~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 174 --DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred --CcceecCHHhCCCCHHHHHHHHHhccCCC-CCHHHHHHHHHHhCChHH
Confidence 2234455 558888888887665432 233446777777777653
No 267
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=77.08 E-value=3.9 Score=33.02 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~ 91 (235)
..+..+.+.+.+..|.+|+||-+.+++......... ...+.+..++..+..+..+.++.++.|...
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~-~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRI-SRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccH-HHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 345566666666789999999999987532211111 122233444444544444566777766543
No 268
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=75.87 E-value=29 Score=35.94 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=45.7
Q ss_pred hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCC
Q psy10044 36 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 36 ~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~ 115 (235)
..++.+|++||+|.. ..+..+....+.+. .+--||.||.+. .+.+....++.++++.|+
T Consensus 294 ~~krvLLVLDdv~~~--------------~~l~~L~~~~~~~~--~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~ 352 (1153)
T PLN03210 294 KHRKVLIFIDDLDDQ--------------DVLDALAGQTQWFG--SGSRIIVITKDK-----HFLRAHGIDHIYEVCLPS 352 (1153)
T ss_pred hCCeEEEEEeCCCCH--------------HHHHHHHhhCccCC--CCcEEEEEeCcH-----HHHHhcCCCeEEEecCCC
Confidence 356789999998642 12333333333222 223455577743 333333567899999999
Q ss_pred HHHHHHHHHHHhcC
Q psy10044 116 YTGRREILDLYLGK 129 (235)
Q Consensus 116 ~~~R~~il~~~l~~ 129 (235)
.++..++|..+..+
T Consensus 353 ~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 353 NELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887644
No 269
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.39 E-value=15 Score=29.73 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEE
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVN 110 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~ 110 (235)
+..|-...|.++++||--+=. +......+..++.++. .. +..+|.+|...+.++. ++.+.
T Consensus 138 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~--------~~~~~ 197 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAAL--------DAAAVALFAELIRAHL---AQ-GGIVIAATHIPLGLPG--------ARELD 197 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCchhhcc--------CcEEe
Confidence 445555679999999954322 2223334444454442 12 3467778888877774 45667
Q ss_pred cCCCCHH
Q psy10044 111 VPPPDYT 117 (235)
Q Consensus 111 i~~P~~~ 117 (235)
+..|..+
T Consensus 198 ~~~~~~~ 204 (207)
T PRK13539 198 LGPFAAE 204 (207)
T ss_pred ecCccCC
Confidence 7666543
No 270
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=74.79 E-value=34 Score=28.39 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCc
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGR 104 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgR 104 (235)
.++.+.-...+..+|.+|++|. ..++..+ -+||..+..-+....|++|-|+|..+.+-.|++- |-
T Consensus 33 ~~~~ea~~~i~~~~pDLILLDi---YmPd~~G-----------i~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~-Gv 97 (224)
T COG4565 33 GTLEEAKMIIEEFKPDLILLDI---YMPDGNG-----------IELLPELRSQHYPVDVIVITAASDMETIKEALRY-GV 97 (224)
T ss_pred ccHHHHHHHHHhhCCCEEEEee---ccCCCcc-----------HHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhc-Cc
Confidence 4455555566677899999876 3333221 3467777666667789999999999999988765 78
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhc
Q psy10044 105 FDIEVNVPPPDYTGRREILDLYLG 128 (235)
Q Consensus 105 f~~~i~i~~P~~~~R~~il~~~l~ 128 (235)
||+.|. +-..+--.+-|..|..
T Consensus 98 ~DYLiK--Pf~~eRl~~aL~~y~~ 119 (224)
T COG4565 98 VDYLIK--PFTFERLQQALTRYRQ 119 (224)
T ss_pred hhheec--ceeHHHHHHHHHHHHH
Confidence 996553 2233333344555543
No 271
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=72.63 E-value=8.7 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 151 DLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 151 di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
-|+.++++|...+....+..+|.+|+..|++
T Consensus 36 rlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 36 RLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4677888888777777888899999999974
No 272
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.52 E-value=20 Score=35.58 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=66.7
Q ss_pred HHHHHHHHH-HhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCC
Q psy10044 25 RRVRDLFKA-AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPG 103 (235)
Q Consensus 25 ~~i~~~F~~-A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpg 103 (235)
.-+..+|.. +....|+.++|||.+.+- ++.....+..|++.. .+++.+|.+|..--.+.-+=+|
T Consensus 115 ~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~~-----P~~l~lvv~SR~rP~l~la~lR-- 179 (894)
T COG2909 115 SLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKHA-----PENLTLVVTSRSRPQLGLARLR-- 179 (894)
T ss_pred HHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHhC-----CCCeEEEEEeccCCCCccccee--
Confidence 455666654 455679999999999873 233455566666553 3567777777543333322222
Q ss_pred cccEEEEcC----CCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCH
Q psy10044 104 RFDIEVNVP----PPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTG 149 (235)
Q Consensus 104 Rf~~~i~i~----~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~ 149 (235)
-=|..++++ .-+.++-.++++...+.. .+.-+++.|-+.|+|+..
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLP-LDAADLKALYDRTEGWAA 228 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCC-CChHHHHHHHhhcccHHH
Confidence 113445554 347888888888776432 344567778888887643
No 273
>smart00427 H2B Histone H2B.
Probab=71.44 E-value=23 Score=25.09 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHh
Q psy10044 144 TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAF 214 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~ 214 (235)
+..|...-.+.+..+|...+.-.++..|+..++..|..-+.|| |.. .-|.-|+-+||..+
T Consensus 28 mnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~Lpg----------eLa-khAvsEgtkAv~k~ 87 (89)
T smart00427 28 MNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPG----------ELA-KHAVSEGTKAVTKY 87 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccH----------HHH-HHHHHHHHHHHHhh
Confidence 3457777788999999999888888899999999999888776 222 34777777777653
No 274
>PRK09183 transposase/IS protein; Provisional
Probab=70.52 E-value=10 Score=32.17 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCeeEEeccchhhhhhcc-HHHHHHHHHHHHHhhCCCeEEEEccccccc
Q psy10044 4 HPDTNHAQGPEFDEVLVG-QGARRVRDLFKAAKDRTPCVVFIDEIDSVG 51 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g-~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~ 51 (235)
|....+++++++...+.. .....+..+|... ...|.+++|||++...
T Consensus 130 G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 130 GIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 556667777777754322 1222355566554 2457899999998753
No 275
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.45 E-value=9.7 Score=31.70 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 21 GQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 21 g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
+...+.++.+.+.-+...-.+++||-+..+.... ...-+.+|++.+..+...++++++ |-+|..+|++.+
T Consensus 106 ~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~gKvIil--Tvhp~~l~e~~~ 175 (235)
T COG2874 106 RSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDLGKVIIL--TVHPSALDEDVL 175 (235)
T ss_pred HHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhCCCEEEE--EeChhhcCHHHH
Confidence 4556677777777777777999999999887532 233456677777666555655554 445899999988
Q ss_pred C
Q psy10044 101 R 101 (235)
Q Consensus 101 r 101 (235)
.
T Consensus 176 ~ 176 (235)
T COG2874 176 T 176 (235)
T ss_pred H
Confidence 7
No 276
>KOG0990|consensus
Probab=70.38 E-value=29 Score=30.70 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
.+-.+++||.|+...+.. |.+-..+..+.. ++-++--.|++..+-|++++ ||. ...+.+-+.+
T Consensus 131 ~fKlvILDEADaMT~~AQ------------nALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~ 193 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDAQ------------NALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMA 193 (360)
T ss_pred ceeEEEecchhHhhHHHH------------HHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChh
Confidence 678999999999865432 223334444433 44455678999999999998 876 4555555655
Q ss_pred HHHHHHHHHhc
Q psy10044 118 GRREILDLYLG 128 (235)
Q Consensus 118 ~R~~il~~~l~ 128 (235)
+-...+..+..
T Consensus 194 ~~~~r~shi~e 204 (360)
T KOG0990|consen 194 QQTERQSHIRE 204 (360)
T ss_pred hhhhHHHHHHh
Confidence 55555555553
No 277
>PHA00012 I assembly protein
Probab=69.52 E-value=9.8 Score=33.76 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=40.1
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
..+++++||+...++.|+.+... ..-+.+++... +..++-+|..|-.|..+|..++.
T Consensus 81 ~gsLlVlDEaq~~fp~R~~~sk~---p~~vie~l~~h----Rh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 81 KNGLLVLDECGTWFNSRSWNDKE---RQPVIDWFLHA----RKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCcEEEEECcccccCCCCcCcCC---cHHHHHHHHHh----ccCCceEEEEcCCHHHHhHHHHH
Confidence 35899999999999998754311 12223333332 34567888899999999999973
No 278
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=67.20 E-value=7.4 Score=31.88 Aligned_cols=27 Identities=37% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCccceEEEe
Q psy10044 201 ITAYHEGGHAVVAFFTKDSENHLTHPITLNL 231 (235)
Q Consensus 201 ~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~ 231 (235)
.+..||.||++++..++-.. +.+.+.|
T Consensus 40 ~v~iHElgH~~~A~~~G~~v----~~i~l~p 66 (208)
T cd06161 40 SVLLHELGHALVARRYGIRV----RSITLLP 66 (208)
T ss_pred HHHHHHHHHHHHHHHcCCCc----cceEEEe
Confidence 46799999999999886543 4566655
No 279
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=67.11 E-value=14 Score=33.14 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=26.9
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR 92 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~ 92 (235)
.+|+|||++.- +-..-.++..|+..+= +.+|++|+|+|++
T Consensus 129 ~lLcfDEF~V~---------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 129 RLLCFDEFQVT---------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred CEEEEeeeecc---------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 59999998762 1112335566666654 4678999999974
No 280
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=66.06 E-value=9.5 Score=31.07 Aligned_cols=63 Identities=29% Similarity=0.367 Sum_probs=36.7
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC---------CCCeEEEEecCCCCcc-cHHhhCCCcccEEE
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ---------NEGVVVLGATNRRDDL-DKALLRPGRFDIEV 109 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~---------~~~v~vIatTn~~~~l-d~al~rpgRf~~~i 109 (235)
-|+.+||++.+..+ ....+.+-+-...+.+.. .+..++|||||..+-| |+.=-| || ..|
T Consensus 97 ~iveldEl~~~~k~--------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v 165 (198)
T PF05272_consen 97 WIVELDELDGLSKK--------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPV 165 (198)
T ss_pred HheeHHHHhhcchh--------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEE
Confidence 68999999987521 122233333233333321 2347889999998855 555567 87 456
Q ss_pred EcCC
Q psy10044 110 NVPP 113 (235)
Q Consensus 110 ~i~~ 113 (235)
++..
T Consensus 166 ~v~~ 169 (198)
T PF05272_consen 166 EVSK 169 (198)
T ss_pred EEcC
Confidence 6654
No 281
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=65.66 E-value=5.8 Score=32.50 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=41.7
Q ss_pred CCCeEEEEccccccccccC-CCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH-HhhCCC------cccEE
Q psy10044 37 RTPCVVFIDEIDSVGAKRT-NSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK-ALLRPG------RFDIE 108 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~-~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~-al~rpg------Rf~~~ 108 (235)
..+.+|+||.+.+++...- +..+.....+.+..++..+..+..+.++.+|.+.......+. .....| -.|..
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~i 185 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKTI 185 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccEE
Confidence 5789999999999875421 111111223344444444444433456666665433332221 111111 23456
Q ss_pred EEcCCCCHHHHH
Q psy10044 109 VNVPPPDYTGRR 120 (235)
Q Consensus 109 i~i~~P~~~~R~ 120 (235)
|.+..+....|.
T Consensus 186 i~l~~~~~~~r~ 197 (225)
T PRK09361 186 LRLEKFRNGKRR 197 (225)
T ss_pred EEEEEccCCeEE
Confidence 667665555554
No 282
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=64.95 E-value=4.8 Score=33.46 Aligned_cols=14 Identities=50% Similarity=0.747 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhh
Q psy10044 202 TAYHEGGHAVVAFF 215 (235)
Q Consensus 202 ~a~~e~gha~~~~~ 215 (235)
+-+||.|||++..+
T Consensus 95 ~l~HE~GHAlI~~~ 108 (220)
T PF14247_consen 95 TLYHELGHALIDDL 108 (220)
T ss_pred HHHHHHHHHHHHHh
Confidence 57999999998864
No 283
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=64.83 E-value=3.7 Score=34.08 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
--+|-||+|||+
T Consensus 90 vaVAAHEvGHAi 101 (222)
T PF04298_consen 90 VAVAAHEVGHAI 101 (222)
T ss_pred HHHHHHHHhHHH
Confidence 457999999998
No 284
>PTZ00463 histone H2B; Provisional
Probab=64.46 E-value=31 Score=25.65 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHh
Q psy10044 144 TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAF 214 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~ 214 (235)
+..|...-.+.+..+|...+.-.++..|+..+++.|..-+.|| |.. .-|+-|+-.||..+
T Consensus 55 mnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpG----------ELa-KhAvsEGtkAv~k~ 114 (117)
T PTZ00463 55 MNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPG----------ELA-KHAVSEGTKAVTKF 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccH----------HHH-HhhhhHHHHHHHHh
Confidence 4468888889999999999998899999999999998888775 222 34777777777654
No 285
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=64.30 E-value=98 Score=26.96 Aligned_cols=105 Identities=23% Similarity=0.324 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhC---CCeEEEEccccccccccCCC-----CCCccHHHHHHHHHHHhcCCCC-CCCeEE--EEecCC---
Q psy10044 26 RVRDLFKAAKDR---TPCVVFIDEIDSVGAKRTNS-----VLHPYANQTINQLLAEMDGFHQ-NEGVVV--LGATNR--- 91 (235)
Q Consensus 26 ~i~~~F~~A~~~---~P~Il~iDeiD~l~~~r~~~-----~~~~~~~~~~~~ll~~ld~~~~-~~~v~v--IatTn~--- 91 (235)
.+..+++..+.. -|.++-+|++.+++...... .-+...-.+...|+..+.+-.. .++.+| +++|..
T Consensus 141 ~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 141 VFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 456666665432 48899999999999873311 1122334566777766554322 233443 555532
Q ss_pred CC--cccHHhhC-CCc-----cc-------------EEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 92 RD--DLDKALLR-PGR-----FD-------------IEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 92 ~~--~ld~al~r-pgR-----f~-------------~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
+. .++.++.. +++ |. ..++++..+.+|-..+++.|....
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 33 57777774 221 11 267888889999999999988654
No 286
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=64.24 E-value=12 Score=24.37 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 151 DLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 151 di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
=+..++.+|...|...++..|+.+|+..|+
T Consensus 36 Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 36 FIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 356677778888888899999999999885
No 287
>COG1106 Predicted ATPases [General function prediction only]
Probab=63.86 E-value=11 Score=33.90 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 20 ~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
.|++-+++-.+....-...-.++++||+|..... . .+..++..+.....+.++-+++||....-+|-.+
T Consensus 252 ~~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp----------~-lm~~~l~~~~~~~~~~niq~~~TTH~~e~id~~l 320 (371)
T COG1106 252 EGEGFKKALIIVPLLSDLNDKVLLIDEIENGLHP----------S-LMILILETLEDKVKNNNIQVFLTTHSTEFIDLLL 320 (371)
T ss_pred ecchHHHHHHHHhhhhhcCCceEEeehhhhccCH----------H-HHHHHHHHHHhhcccceEEEEeecccHHHHHHHH
Confidence 3444455444444444444479999999997642 1 2233333332223344799999999999999999
Q ss_pred hC
Q psy10044 100 LR 101 (235)
Q Consensus 100 ~r 101 (235)
.+
T Consensus 321 ~~ 322 (371)
T COG1106 321 ER 322 (371)
T ss_pred Hh
Confidence 88
No 288
>PLN00158 histone H2B; Provisional
Probab=63.79 E-value=39 Score=25.13 Aligned_cols=60 Identities=28% Similarity=0.334 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHh
Q psy10044 144 TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAF 214 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~ 214 (235)
+..|...-.+.+..+|...+.-.++..|+..++..|..-+.|| |.. .-|.-|+-.||..+
T Consensus 54 mnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpg----------ELa-KhAvsEGtkAv~k~ 113 (116)
T PLN00158 54 MNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPG----------ELA-KHAVSEGTKAVTKF 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccH----------HHH-HHHHHHHHHHHHHh
Confidence 4567888889999999999988899999999999999888775 222 34777887777654
No 289
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=63.44 E-value=78 Score=28.68 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=45.2
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEE
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEV 109 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i 109 (235)
.+..+.....+.||+||++.+- .+.+.+..+...-. .++++.+++...-....+-.=|||. ..+
T Consensus 86 ~~~~~~~~~~~yifLDEIq~v~----------~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~GR~-~~~ 149 (398)
T COG1373 86 AYIELKEREKSYIFLDEIQNVP----------DWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAGRG-KDL 149 (398)
T ss_pred HHHHhhccCCceEEEecccCch----------hHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCCCc-eeE
Confidence 3333333355899999998862 24444444443211 1456665555444444444458895 578
Q ss_pred EcCCCCHHHHHH
Q psy10044 110 NVPPPDYTGRRE 121 (235)
Q Consensus 110 ~i~~P~~~~R~~ 121 (235)
++.+.+..+...
T Consensus 150 ~l~PlSF~Efl~ 161 (398)
T COG1373 150 ELYPLSFREFLK 161 (398)
T ss_pred EECCCCHHHHHh
Confidence 888889988865
No 290
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=63.10 E-value=40 Score=33.57 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHH---hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAA---KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A---~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
..+|+.++..+|.+.-.... -.+.-+|... ....|.++++||.-..+.. ......+..++..+. +
T Consensus 599 ~~~~~~fdl~~l~~~~~~~~-~vl~~l~~~i~~~~~~~p~illlDE~~~~Ld~-------~~~~~~i~~~lk~~R----K 666 (811)
T PRK13873 599 SADVQAFEMEGLMGTKAAAP-AVLSYLFHRIEDRFDGRPTLLILDEAWLFLDD-------PVFAAQLREWLKTLR----K 666 (811)
T ss_pred cCCEEEEEChhhccCchHHH-HHHHHHHHHHHHHhcCCCcEEEEcChhhhCCC-------HHHHHHHHHHHHHHH----H
Confidence 45678888888876433222 2333444333 2457999999998887642 122334444444443 2
Q ss_pred CCeEEEEecCCCCccc-----HHhhCCCcccEEEEcCCCC
Q psy10044 81 EGVVVLGATNRRDDLD-----KALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld-----~al~rpgRf~~~i~i~~P~ 115 (235)
.+..+|.+|..++++. .+++. -.+..|.++.|.
T Consensus 667 ~~~~~i~~TQ~~~d~~~s~~~~~il~--n~~t~i~L~~~~ 704 (811)
T PRK13873 667 KNVSVIFATQSLADIDGSAIAPAIIE--SCPTRIFLPNER 704 (811)
T ss_pred cCCEEEEEECCHHHHhcCchHHHHHH--hCCeeEEcCCch
Confidence 2446667777766553 34555 456777777765
No 291
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=62.39 E-value=18 Score=29.33 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+++++++.+....|.++++||.-+=. +......+...++..+.. .+..+|.+|..++.+.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~gl-------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGT-------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCC-------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 668888888876689999999963211 111122233445555532 2446777888776554
No 292
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=61.53 E-value=18 Score=30.62 Aligned_cols=87 Identities=24% Similarity=0.341 Sum_probs=44.2
Q ss_pred chhhhhhccHHHHHH--HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHH-HHHHHHhcCCCCCCCeEEEEec
Q psy10044 13 PEFDEVLVGQGARRV--RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 13 s~l~~~~~g~~~~~i--~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~-~~ll~~ld~~~~~~~v~vIatT 89 (235)
+.|.++|..+-.--+ |-.+..|-...|-|+++||==.-+ +...+..+ ..++..+.. .+.-|+..|
T Consensus 121 ~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL--------DalTR~~lq~~l~~lw~~----~~~TvllVT 188 (248)
T COG1116 121 AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL--------DALTREELQDELLRLWEE----TRKTVLLVT 188 (248)
T ss_pred cchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh--------hHHHHHHHHHHHHHHHHh----hCCEEEEEe
Confidence 344555544333323 334555566789999999931110 11122233 334443442 233444555
Q ss_pred CCCCcccHHhh----------CCCcccEEEEcCCC
Q psy10044 90 NRRDDLDKALL----------RPGRFDIEVNVPPP 114 (235)
Q Consensus 90 n~~~~ld~al~----------rpgRf~~~i~i~~P 114 (235)
. ++++|+. +||+.-..+.++.|
T Consensus 189 H---di~EAv~LsdRivvl~~~P~~i~~~~~i~l~ 220 (248)
T COG1116 189 H---DVDEAVYLADRVVVLSNRPGRIGEELEIDLP 220 (248)
T ss_pred C---CHHHHHhhhCEEEEecCCCcceeeEEecCCC
Confidence 4 5666653 46677566666666
No 293
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=61.19 E-value=4.4 Score=30.95 Aligned_cols=12 Identities=50% Similarity=0.578 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 106 ~~v~~HEiGHaL 117 (154)
T PF00413_consen 106 QSVAIHEIGHAL 117 (154)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhhhcccccc
Confidence 357999999997
No 294
>PRK08181 transposase; Validated
Probab=61.17 E-value=25 Score=30.14 Aligned_cols=75 Identities=8% Similarity=0.059 Sum_probs=41.7
Q ss_pred CCeeEEeccchhhhhhcc-HHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVG-QGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g-~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
|...++++.++|+..+.. .......+.++... .+.+|+|||++.+..+ ......+-++++...+ + +
T Consensus 134 g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~-------~~~~~~Lf~lin~R~~---~-~ 200 (269)
T PRK08181 134 GWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD-------QAETSVLFELISARYE---R-R 200 (269)
T ss_pred CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC-------HHHHHHHHHHHHHHHh---C-C
Confidence 556777788888876522 11223344444443 4689999999876442 2223344444444321 1 2
Q ss_pred eEEEEecCCC
Q psy10044 83 VVVLGATNRR 92 (235)
Q Consensus 83 v~vIatTn~~ 92 (235)
-+|.|||.+
T Consensus 201 -s~IiTSN~~ 209 (269)
T PRK08181 201 -SILITANQP 209 (269)
T ss_pred -CEEEEcCCC
Confidence 356688865
No 295
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=60.45 E-value=9.3 Score=35.13 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
..+-+..|.++++||+++.+..- ....+...+..+...-.+.+++.|++|+-++
T Consensus 519 Akllaerpn~~~iDEF~AhLD~~-----------TA~rVArkiselaRe~giTlivvThrpEv~~ 572 (593)
T COG2401 519 AKLLAERPNVLLIDEFAAHLDEL-----------TAVRVARKISELAREAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHHHhcCCCcEEhhhhhhhcCHH-----------HHHHHHHHHHHHHHHhCCeEEEEecCHHHHh
Confidence 34456779999999999987532 1222333333333445678889999988765
No 296
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=60.31 E-value=43 Score=32.93 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=33.0
Q ss_pred hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 36 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 36 ~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
...|.+++|||+..++.. ......+..++..+. +.+..++.+|..+.++
T Consensus 627 ~~~~~~i~iDEa~~ll~~-------~~~~~~i~~~~r~~R----K~~~~~~~~TQ~~~d~ 675 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGN-------PVFAAKIRDWLKTLR----KANGIVVLATQSINDA 675 (785)
T ss_pred CCCCeEEEEechhhhcCC-------HHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHH
Confidence 356899999999998752 223445566666655 3455777788777654
No 297
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=59.97 E-value=37 Score=33.71 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=56.1
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHH---hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAA---KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A---~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.++.++.++|.+... ...-.+.-+|... ....|.+++|||+..++.. +.....+..++..+. +.+
T Consensus 593 ~~~~fdl~~L~~~~~-~~~~vl~yl~~ri~~~~~gr~~ii~iDEaw~~l~~-------~~~~~~i~~~~kt~R----K~n 660 (789)
T PRK13853 593 SITGFDMTHLLEYEE-VCAPAAAYLLHRIGAMVDGRRFVMSCDEFRAYLLN-------PKFAAVVDKFLLTVR----KNN 660 (789)
T ss_pred CeEEEEchHhcCChh-hHHHHHHHHHHHHHHhcCCCcEEEEEechhHHhCC-------HHHHHHHHHHHHHHH----HcC
Confidence 467777777765311 1111222333332 2356999999999888762 223345556666554 455
Q ss_pred eEEEEecCCCCccc-----HHhhCCCcccEEEEcCCCC
Q psy10044 83 VVVLGATNRRDDLD-----KALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 83 v~vIatTn~~~~ld-----~al~rpgRf~~~i~i~~P~ 115 (235)
..++.+|..++++- .+++. -.+..|.++.|.
T Consensus 661 g~~~~~TQs~~D~~~s~~~~~i~~--n~~t~I~Lpn~~ 696 (789)
T PRK13853 661 GMLILATQQPEHVLESPLGASLVA--QCMTKIFYPSPT 696 (789)
T ss_pred eEEEEecCCHHHHHcCchHHHHHH--hCCeEEEcCCcc
Confidence 67788887776553 34554 456677777664
No 298
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=59.96 E-value=33 Score=25.48 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
|..+-...+..+|...|--.++..|+.+|+.-|++....
T Consensus 30 ~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 30 FAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 666777888888988888889999999999999888765
No 299
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=59.39 E-value=5.1 Score=32.60 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=13.1
Q ss_pred hcCCCCCHHHHHHHHHH
Q psy10044 142 RGTTGFTGADLENMVNQ 158 (235)
Q Consensus 142 ~~t~G~s~~di~~l~~~ 158 (235)
..+.|+||+|+++.+-+
T Consensus 35 ~~s~g~TGaevAr~iLd 51 (226)
T COG2738 35 RASSGLTGAEVARMILD 51 (226)
T ss_pred cCcCCCcHHHHHHHHHh
Confidence 45789999999776654
No 300
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=59.00 E-value=41 Score=28.80 Aligned_cols=66 Identities=21% Similarity=0.439 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC-----
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR----- 101 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r----- 101 (235)
...++..++.+.|.++++||+-. ...+..++..+. .+..+|++|..+ .+..+..|
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~--------------~e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~~~ 242 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGR--------------EEDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVFKE 242 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCc--------------HHHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHHHH
Confidence 44577788889999999999511 123444444442 245778888754 44444433
Q ss_pred ---CCcccEEEEcC
Q psy10044 102 ---PGRFDIEVNVP 112 (235)
Q Consensus 102 ---pgRf~~~i~i~ 112 (235)
.+-|++.+-+.
T Consensus 243 l~~~~~~~r~i~L~ 256 (270)
T TIGR02858 243 LIENEAFERYVVLS 256 (270)
T ss_pred HHhcCceEEEEEEe
Confidence 45577777663
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=58.61 E-value=47 Score=25.82 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
+..+...+....|.+++||++-.+... +.......+..++..+.. .++.+|.+++...
T Consensus 84 ~~~i~~~~~~~~~~~lviD~~~~~~~~-----~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 84 IQRLKDAIEEFKAKRVVIDSVSGLLLM-----EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHHHhhc-----ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 455556666778999999999988653 112223334445555442 2345555555443
No 302
>COG3899 Predicted ATPase [General function prediction only]
Probab=58.52 E-value=1e+02 Score=31.06 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=69.5
Q ss_pred HHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcC
Q psy10044 33 AAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVP 112 (235)
Q Consensus 33 ~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~ 112 (235)
.+.+..|-|+|+||++=. ++.+...+..++..+.......+-+....+++ ..+.+..++-+++ ..|.+.
T Consensus 149 ~~~~~~plVi~leDlhWa---------D~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~-~~~~~~~~~~~~i-~~I~L~ 217 (849)
T COG3899 149 FTAEEHPLVIVLEDLHWA---------DSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR-PTLGEILKSATNI-TTITLA 217 (849)
T ss_pred HHhccCCeEEEEeccccc---------ChhHHHHHHHHHHhcchhhhhccccccCCCcc-chhhHHhhcCCce-eEEecC
Confidence 345566999999999775 33345556666655541011111122233333 3345555554455 589999
Q ss_pred CCCHHHHHHHHHHHhcC-ccCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 113 PPDYTGRREILDLYLGK-IVSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 113 ~P~~~~R~~il~~~l~~-~~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
+.+..+-..++...++. ..........+.++|.| .|-=+.+++.
T Consensus 218 PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~G-nPfFi~e~lk 262 (849)
T COG3899 218 PLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKG-NPFFIEEFLK 262 (849)
T ss_pred cCchhhHHHHHHHHhCCcccccchHHHHHHHHhcC-CCccHHHHHH
Confidence 99999999999998877 33444457778888888 6655555544
No 303
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=58.23 E-value=48 Score=33.12 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=53.0
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHh---hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAK---DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~---~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
+++.++..++.+.-.....-.+..+|.... ...|.++++||....+.. ......+..++..+.. .+
T Consensus 617 ~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d-------~~~~~~i~~~lk~~RK----~~ 685 (818)
T PRK13830 617 AFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGH-------PVFRDKIREWLKVLRK----AN 685 (818)
T ss_pred ceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCC-------HHHHHHHHHHHHHHHH----cC
Confidence 456666666654210011123333343332 357999999998887642 1233445555555432 34
Q ss_pred eEEEEecCCCCccc-----HHhhCCCcccEEEEcCCCC
Q psy10044 83 VVVLGATNRRDDLD-----KALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 83 v~vIatTn~~~~ld-----~al~rpgRf~~~i~i~~P~ 115 (235)
..+|.+|..++++. .++.. -.+..|.++.|.
T Consensus 686 ~~vil~Tq~~~d~~~s~~a~~i~~--~~~t~i~L~n~~ 721 (818)
T PRK13830 686 CAVVLATQSISDAERSGIIDVLKE--SCPTKICLPNGA 721 (818)
T ss_pred CEEEEEeCCHHHHhcCchHHHHHh--cCCeEEECCCcc
Confidence 46777887776653 34444 566777776654
No 304
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=58.14 E-value=5.6 Score=30.76 Aligned_cols=12 Identities=50% Similarity=0.612 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 105 ~~~~~HEiGHaL 116 (156)
T cd04279 105 QAIALHELGHAL 116 (156)
T ss_pred HHHHHHHhhhhh
Confidence 456999999998
No 305
>PRK12377 putative replication protein; Provisional
Probab=58.08 E-value=35 Score=28.87 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=39.3
Q ss_pred CCeeEEeccchhhhhhccHHH--HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGA--RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~--~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
|...+.++.++++......-. .....+++.. ....+|+|||+..... +.+...++..++..-. ..
T Consensus 129 g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~-------s~~~~~~l~~ii~~R~----~~ 195 (248)
T PRK12377 129 GRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE-------TKNEQVVLNQIIDRRT----AS 195 (248)
T ss_pred CCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-------CHHHHHHHHHHHHHHH----hc
Confidence 456677777777764322100 0112333333 3468999999977532 2223334444444422 22
Q ss_pred CeEEEEecCCC
Q psy10044 82 GVVVLGATNRR 92 (235)
Q Consensus 82 ~v~vIatTn~~ 92 (235)
..-+|.|||..
T Consensus 196 ~~ptiitSNl~ 206 (248)
T PRK12377 196 MRSVGMLTNLN 206 (248)
T ss_pred CCCEEEEcCCC
Confidence 23456689964
No 306
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=57.92 E-value=18 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
--+.+++++|...+.-.++..++.+|+..|++
T Consensus 34 ~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 34 YRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 44567777777777767888899999998873
No 307
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=57.91 E-value=14 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.025 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCccceEEEe
Q psy10044 200 MITAYHEGGHAVVAFFTKDSENHLTHPITLNL 231 (235)
Q Consensus 200 ~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~ 231 (235)
-....||.||+++++..+-.. .+..+.|
T Consensus 42 ~~l~iHElgH~~~A~~~G~~~----~~~~l~P 69 (183)
T cd06160 42 AILGIHEMGHYLAARRHGVKA----SLPYFIP 69 (183)
T ss_pred HHHHHHHHHHHHHHHHCCCCc----cceeeee
Confidence 346799999999999876655 3345555
No 308
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=57.75 E-value=58 Score=27.20 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccE
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDI 107 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~ 107 (235)
|-....|-.+.|.||+-||= .++-+..... .+-.++..+ +...+..+|..|.. +.+-. +.|+
T Consensus 150 RVAIARAL~~~P~iilADEP-------TgnLD~~t~~-~V~~ll~~~---~~~~g~tii~VTHd-----~~lA~--~~dr 211 (226)
T COG1136 150 RVAIARALINNPKIILADEP-------TGNLDSKTAK-EVLELLREL---NKERGKTIIMVTHD-----PELAK--YADR 211 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCc-------cccCChHHHH-HHHHHHHHH---HHhcCCEEEEEcCC-----HHHHH--hCCE
Confidence 33455666788999999992 2222222223 333333333 23334466667764 45555 7788
Q ss_pred EEEcC
Q psy10044 108 EVNVP 112 (235)
Q Consensus 108 ~i~i~ 112 (235)
.|++.
T Consensus 212 ~i~l~ 216 (226)
T COG1136 212 VIELK 216 (226)
T ss_pred EEEEe
Confidence 87764
No 309
>COG1485 Predicted ATPase [General function prediction only]
Probab=57.66 E-value=16 Score=32.56 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=26.5
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~ 91 (235)
-+|+|||+..= +. .--.++..|+..|= .++|++++|+|.
T Consensus 132 ~vLCfDEF~Vt-----DI----~DAMiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 132 RVLCFDEFEVT-----DI----ADAMILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred CEEEeeeeeec-----Ch----HHHHHHHHHHHHHH----HCCcEEEEeCCC
Confidence 59999998651 11 11335667777665 358899999996
No 310
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=57.65 E-value=33 Score=24.46 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 144 TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
..++|++-...+++-|.-.|=.++...|+.+|+.+|+.
T Consensus 57 ~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 57 KLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred HcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 45799999999999999999999999999999999974
No 311
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=57.30 E-value=78 Score=31.74 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=55.4
Q ss_pred CCeeEEeccchhhhhhc--cHHHHHHHHHH-HHHh--hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 4 HPDTNHAQGPEFDEVLV--GQGARRVRDLF-KAAK--DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~--g~~~~~i~~~F-~~A~--~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
+.+++.++.++|.+.-. ......+-.+| ...+ ...|.++++||+..++.. +.....+..++..+.
T Consensus 626 ~~~~vvFDl~~L~dd~~l~~v~~~~i~~~~~~~~~~~~grr~iiviDEaW~lL~~-------p~~a~fi~~~~kt~R--- 695 (829)
T TIGR03783 626 HKRFIVFEIDAIKDNKILFPVVTIIIMEAFINKMRRLKGVRKMILIEEAWKAIAS-------ANMAEYIKYLYKTVR--- 695 (829)
T ss_pred cCcEEEEECccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCHHHHhCC-------HHHHHHHHHHHHHHh---
Confidence 45788888888764311 11111222223 2222 245899999999998852 222334444444444
Q ss_pred CCCCeEEEEecCCCCccc------HHhhCCCcccEEEEcCCCC
Q psy10044 79 QNEGVVVLGATNRRDDLD------KALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 79 ~~~~v~vIatTn~~~~ld------~al~rpgRf~~~i~i~~P~ 115 (235)
+.+..++.+|-.++++. .+++. ..+..|.++.+.
T Consensus 696 -K~ng~~i~iTQs~~Dll~s~i~a~aIi~--ns~tkIlL~q~~ 735 (829)
T TIGR03783 696 -KYFGEAIVVTQEVDDIISSPIVKESIIN--NSDCKILLDQRK 735 (829)
T ss_pred -hcCCEEEEEcCCHHHHhcChHHHHHHHH--hCCEEEEeCCcc
Confidence 34457777887776554 24555 556666665554
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=56.80 E-value=38 Score=26.25 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+-.+..|....|.++++||--+=+ +......+..++.++. .+ +..+|.+|.+++.++
T Consensus 90 rl~laral~~~p~illlDEP~~~L--------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 90 MVEIARALARNARLLILDEPTAAL--------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 344666777889999999964322 2233445555555543 12 335666777665444
No 313
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=56.54 E-value=13 Score=29.39 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEccccccccc
Q psy10044 24 ARRVRDLFKAAKD-RTPCVVFIDEIDSVGAK 53 (235)
Q Consensus 24 ~~~i~~~F~~A~~-~~P~Il~iDeiD~l~~~ 53 (235)
...++.+.+.++. ..|.+|+||.+..+...
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 4556777788877 67999999999999876
No 314
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=56.23 E-value=38 Score=28.00 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCC
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRP 102 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rp 102 (235)
-+.++.+++.+ ..|++++|||+-+=.. ......+...++..+.. ..+..+|.+|...+.......+|
T Consensus 97 ~~~~~~il~~~--~~~sLvLlDE~~~Gt~-------~~dg~~la~ail~~L~~---~~~~~~i~~TH~~el~~~~~~~~ 163 (218)
T cd03286 97 LSETANILRHA--TPDSLVILDELGRGTS-------THDGYAIAHAVLEYLVK---KVKCLTLFSTHYHSLCDEFHEHG 163 (218)
T ss_pred HHHHHHHHHhC--CCCeEEEEecccCCCC-------chHHHHHHHHHHHHHHH---hcCCcEEEEeccHHHHHHhhcCc
Confidence 46667777776 4689999999644111 11222333333444432 12457777888877665554444
No 315
>KOG0479|consensus
Probab=56.13 E-value=23 Score=33.99 Aligned_cols=61 Identities=33% Similarity=0.456 Sum_probs=38.3
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHH----hc--CC--CCCCCeEEEEecCCCC-------------cccHH
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE----MD--GF--HQNEGVVVLGATNRRD-------------DLDKA 98 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~----ld--~~--~~~~~v~vIatTn~~~-------------~ld~a 98 (235)
.|++|||+|.+..- -+..+-+.+.+ +. |+ .-+.+.-|+||+|... .|+..
T Consensus 400 GVVCIDEFDKMsDi---------DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDS 470 (818)
T KOG0479|consen 400 GVVCIDEFDKMSDI---------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDS 470 (818)
T ss_pred ceEEehhcccccch---------hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHH
Confidence 59999999997421 12223333333 11 22 1234678999999643 58999
Q ss_pred hhCCCcccEEEEc
Q psy10044 99 LLRPGRFDIEVNV 111 (235)
Q Consensus 99 l~rpgRf~~~i~i 111 (235)
|++ |||..+-+
T Consensus 471 LLS--RFDLlFv~ 481 (818)
T KOG0479|consen 471 LLS--RFDLLFVV 481 (818)
T ss_pred HHh--hhcEEEEE
Confidence 999 99965544
No 316
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=55.48 E-value=1.4e+02 Score=26.00 Aligned_cols=72 Identities=13% Similarity=-0.013 Sum_probs=45.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHH
Q psy10044 107 IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAI-DGVPHVTMKYLEYARDK 182 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~-~~~~~i~~~~~~~al~~ 182 (235)
..+.+..|+..+....++..+... ..+...+..|++.+. .|+..+.++--..+.- .+...||.++++..+..
T Consensus 135 ~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g----~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLG----GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhC----CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 467888899999999999888664 222233556666544 4555555554434333 33456888888776543
No 317
>PRK06526 transposase; Provisional
Probab=55.09 E-value=31 Score=29.22 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR 92 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~ 92 (235)
.+.+|+|||++.+... ......+-+++....+ + . -+|.|||.+
T Consensus 159 ~~dlLIIDD~g~~~~~-------~~~~~~L~~li~~r~~---~-~-s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFE-------PEAANLFFQLVSSRYE---R-A-SLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCC-------HHHHHHHHHHHHHHHh---c-C-CEEEEcCCC
Confidence 4689999999886432 2223344455544321 1 2 366788875
No 318
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=55.07 E-value=41 Score=29.38 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEec
Q psy10044 23 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 23 ~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatT 89 (235)
...+++++.+.+...-..+|+|||++...+..++....+.....+..+.+.+. +.+|+-.-+|
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP----~ARvvY~SAT 219 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP----NARVVYASAT 219 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC----CCcEEEeccc
Confidence 45788888888876667899999999987653322112222233344444433 4566666555
No 319
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=54.99 E-value=45 Score=27.79 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHHHh--hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 20 VGQGARRVRDLFKAAK--DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 20 ~g~~~~~i~~~F~~A~--~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
+|+-.+-.++--..|+ -+.|+|++|||-=+ +-+=...+.+..|+.++. +++-.||.+|...+++.
T Consensus 131 v~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s--------GLDi~~~r~~~dfi~q~k----~egr~viFSSH~m~Eve- 197 (245)
T COG4555 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTS--------GLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIMQEVE- 197 (245)
T ss_pred HhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC--------CccHHHHHHHHHHHHHhh----cCCcEEEEecccHHHHH-
Confidence 3333333333333333 47799999999321 112233455666666655 33447777887766654
Q ss_pred HhhC
Q psy10044 98 ALLR 101 (235)
Q Consensus 98 al~r 101 (235)
|+..
T Consensus 198 alCD 201 (245)
T COG4555 198 ALCD 201 (245)
T ss_pred Hhhh
Confidence 3443
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=54.77 E-value=20 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEcccccccccc
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR 54 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r 54 (235)
..+..+++.+....|.+|+||++..+....
T Consensus 145 ~~le~I~~~i~~~~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 145 TNLEDILASIEELKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred CcHHHHHHHHHhcCCcEEEEcchHHhhccc
Confidence 446677777888899999999999987543
No 321
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=54.37 E-value=7.4 Score=30.08 Aligned_cols=13 Identities=54% Similarity=0.429 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHH
Q psy10044 199 NMITAYHEGGHAV 211 (235)
Q Consensus 199 ~~~~a~~e~gha~ 211 (235)
...++.||.|||+
T Consensus 94 ~~~~~~HEiGHaL 106 (165)
T cd04268 94 LRNTAEHELGHAL 106 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 3467999999998
No 322
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=53.49 E-value=77 Score=25.16 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
+..|....|.++++||-.+=+ +......+..++.... ..+..+|.+|+.++.+..
T Consensus 134 la~al~~~p~~lllDEP~~~L--------D~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 134 IARLIACQSDLWLLDEVETNL--------SKENRDLLNNLIVMKA----NSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH----hCCCEEEEEeCCccccch
Confidence 344455679999999965432 2223444444554332 123466678887776654
No 323
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=53.40 E-value=33 Score=24.06 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-+++++.+|...+--.++..|+.+|+..|++++
T Consensus 45 ~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~ 78 (85)
T cd00076 45 SYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 78 (85)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHC
Confidence 4456666677766666788899999999999876
No 324
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=52.45 E-value=32 Score=26.62 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=27.2
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.|.++++||...=.. ......+...+...... +..+|.+|.+++...
T Consensus 99 ~~~llllDEp~~gld-------~~~~~~l~~~l~~~~~~-----~~~vii~TH~~~~~~ 145 (162)
T cd03227 99 PRPLYILDEIDRGLD-------PRDGQALAEAILEHLVK-----GAQVIVITHLPELAE 145 (162)
T ss_pred CCCEEEEeCCCCCCC-------HHHHHHHHHHHHHHHhc-----CCEEEEEcCCHHHHH
Confidence 789999999866432 11223344444433332 346777888776544
No 325
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=52.45 E-value=23 Score=28.67 Aligned_cols=89 Identities=8% Similarity=-0.024 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCeEEEEccccccccccCCCC-CCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc-----HHh
Q psy10044 26 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD-----KAL 99 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld-----~al 99 (235)
.+..+...+. ..+.+|+||-+-+++....... ......+.+..++..|..+..+.++.+|.+.......+ |+.
T Consensus 92 ~~~~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~ 170 (218)
T cd01394 92 AIQETETFAD-EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLG 170 (218)
T ss_pred HHHHHHHHHh-cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccC
Confidence 3444444443 3489999999999864321111 11112233444444444443455677776655432222 321
Q ss_pred hC--CCcccEEEEcCCCC
Q psy10044 100 LR--PGRFDIEVNVPPPD 115 (235)
Q Consensus 100 ~r--pgRf~~~i~i~~P~ 115 (235)
-+ ....|..|.+....
T Consensus 171 g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 171 GHTLEHWSKVILRLEKLR 188 (218)
T ss_pred CcchhcceeEEEEEEEcC
Confidence 10 12456677776654
No 326
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=52.39 E-value=27 Score=28.92 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
-+.++.+++.|. .|+++++||+.+=.. ......+...++..+.. ..+..+|.+|.+.+..+
T Consensus 98 ~~~~~~il~~~~--~~sLvllDE~~~gT~-------~~d~~~i~~~il~~l~~---~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 98 LSETSHILSNCT--SRSLVILDELGRGTS-------THDGIAIAYATLHYLLE---EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHhCC--CCeEEEEccCCCCCC-------hhhHHHHHHHHHHHHHh---ccCCeEEEEcccHHHHH
Confidence 466777777664 489999999754111 11112222334444432 13457777998877654
No 327
>KOG3928|consensus
Probab=52.36 E-value=1.9e+02 Score=26.61 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=79.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhC-----CCeEEEEcccccccc----ccCCCC-CCccHHHHHHHHHH
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR-----TPCVVFIDEIDSVGA----KRTNSV-LHPYANQTINQLLA 72 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~-----~P~Il~iDeiD~l~~----~r~~~~-~~~~~~~~~~~ll~ 72 (235)
.|.|++.+--..+.+ +--....+..+++..++. -|..+-||++-+++. ++.... --+..-.++.-+..
T Consensus 277 kG~pl~ei~e~gI~~--i~~a~~~vg~llrelk~~s~~~~~kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~ 354 (461)
T KOG3928|consen 277 KGKPLVEIVETGIAS--IKNAPDAVGILLRELKRLSVQSKVKVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRD 354 (461)
T ss_pred CCCcchhhHHhhhhh--hccchHHHHHHHHHHHHhhhhcCccEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHH
Confidence 345555544433333 222334445555554432 378999999999998 332211 11233455666666
Q ss_pred HhcCCCCCCCeEEEEecC---CCCcccH---------HhhCCCccc-----EEEEcCCCCHHHHHHHHHHHhcCc-c---
Q psy10044 73 EMDGFHQNEGVVVLGATN---RRDDLDK---------ALLRPGRFD-----IEVNVPPPDYTGRREILDLYLGKI-V--- 131 (235)
Q Consensus 73 ~ld~~~~~~~v~vIatTn---~~~~ld~---------al~rpgRf~-----~~i~i~~P~~~~R~~il~~~l~~~-~--- 131 (235)
.+.+--... .+|+++. -+..... -+.-+--|| ..|+++..+.+|-.+++.+|++.. .
T Consensus 355 ~i~ndwt~g--~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kk 432 (461)
T KOG3928|consen 355 IISNDWTFG--SVIMAISGVTTPSAFGHLGVAPYVPRKLLGEEGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKK 432 (461)
T ss_pred HHhcccccc--eEEEEecccccchhccccccccCCchHhcCccchhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhh
Confidence 666543322 3444443 1111111 111111122 246777889999999999999764 1
Q ss_pred -CCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 132 -SKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 132 -~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
..+.+++++--++ +..|+.++.+|.
T Consensus 433 v~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 433 VPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred cCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 1233455554444 677887777763
No 328
>PRK09694 helicase Cas3; Provisional
Probab=52.29 E-value=23 Score=35.68 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhh
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~ 100 (235)
.+.++|+|||+|++ ..+...++..+|..+... ..+ +++.|+..|..+-..|.
T Consensus 438 La~svvIiDEVHAy---------D~ym~~lL~~~L~~l~~~--g~~-vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 438 LGRSVLIVDEVHAY---------DAYMYGLLEAVLKAQAQA--GGS-VILLSATLPATLKQKLL 489 (878)
T ss_pred hccCeEEEechhhC---------CHHHHHHHHHHHHHHHhc--CCc-EEEEeCCCCHHHHHHHH
Confidence 44689999999997 234556777777776543 223 55566666654444433
No 329
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=51.86 E-value=5.9 Score=30.71 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 108 ~~~~~HEiGHaL 119 (157)
T cd04278 108 FSVAAHEIGHAL 119 (157)
T ss_pred HHHHHHHhcccc
Confidence 457999999997
No 330
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=51.60 E-value=20 Score=29.08 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=33.7
Q ss_pred hhCCCeEEEEccccccccccCCCCC-CccHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy10044 35 KDRTPCVVFIDEIDSVGAKRTNSVL-HPYANQTINQLLAEMDGFHQNEGVVVLGATN 90 (235)
Q Consensus 35 ~~~~P~Il~iDeiD~l~~~r~~~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn 90 (235)
....+.+|+||-+-.++........ .....+.+..++..|..+....++.||.++.
T Consensus 111 ~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 111 SSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred hcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 3567899999999998764321110 1122345666666666665556666666653
No 331
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=50.15 E-value=18 Score=30.10 Aligned_cols=27 Identities=37% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCccceEEEe
Q psy10044 201 ITAYHEGGHAVVAFFTKDSENHLTHPITLNL 231 (235)
Q Consensus 201 ~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~ 231 (235)
.+..||.||++++..++-. .+.+.+.|
T Consensus 55 ~v~iHElgH~~~A~~~G~~----v~~i~l~p 81 (227)
T cd06164 55 SVLLHELGHSLVARRYGIP----VRSITLFL 81 (227)
T ss_pred HHHHHHHHHHHHHHHcCCe----ECeEEEEe
Confidence 3569999999999887544 34555554
No 332
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=50.09 E-value=68 Score=25.92 Aligned_cols=56 Identities=11% Similarity=-0.045 Sum_probs=33.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
.+..|-...|.++++||--+=+ +......+.+++..+.. + +..+|.+|...+.++.
T Consensus 147 ~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANL--------DLEGITLVNRMISAHLR---G-GGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHHh---C-CCEEEEEecChhhhhh
Confidence 3445556779999999964422 22344455556655431 2 2356668877776653
No 333
>PTZ00015 histone H4; Provisional
Probab=50.08 E-value=37 Score=24.67 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-+++++.+|...+--.++..|+.+|+..|++++
T Consensus 62 ~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~ 95 (102)
T PTZ00015 62 AFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQ 95 (102)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Confidence 4456667777766666788899999999999876
No 334
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=49.91 E-value=68 Score=26.75 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 21 GQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 21 g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
..--+.++.+++.+.. .++|+|||+-.= ....+...+...++..+.. ..+..+|.||+..+-...
T Consensus 107 ~~E~~~~~~il~~~~~--~sLvliDE~g~g-------T~~~eg~ai~~aile~l~~---~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 107 MAEMKRLSSILRNATE--KSLVLIDELGRG-------TNPEEGIAIAIAILEYLLE---KSGCFVIIATHFHELAEL 171 (235)
T ss_dssp HHHHHHHHHHHHH--T--TEEEEEESTTTT-------SSHHHHHHHHHHHHHHHHH---TTT-EEEEEES-GGGGGH
T ss_pred HHhHHHHHhhhhhccc--ceeeecccccCC-------CChhHHHHHHHHHHHHHHH---hccccEEEEeccchhHHH
Confidence 3445778888887753 589999997331 1122223344455555442 134578889998865443
No 335
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=49.89 E-value=1.4e+02 Score=24.41 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=31.5
Q ss_pred hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 36 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 36 ~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...|++++|||+-+=.. ......+...++..+-.. ...+..+|.+|...+.+....
T Consensus 106 ~~~~slvllDE~~~gtd-------~~~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 106 ATRRSLVLIDEFGKGTD-------TEDGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCcEEEeccccCCCC-------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHHhhh
Confidence 35689999999754221 111233444455554321 112346777898887766655
No 336
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=49.87 E-value=69 Score=25.55 Aligned_cols=55 Identities=16% Similarity=0.028 Sum_probs=32.3
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|....|.++++||--+=+ +......+..++..+. . .+..+|.+|..+..++
T Consensus 137 ~laral~~~p~~lilDEP~~~L--------D~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVAL--------DELSLLTIITKIQEHR---A-KGGAVLLTSHQDLPLN 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccc--------CHHHHHHHHHHHHHHH---H-cCCEEEEEeCCchhcc
Confidence 3455566789999999954422 2233445555555442 1 2335667887776665
No 337
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=49.67 E-value=58 Score=25.68 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=27.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
+..|-...|.++++||--+=+ +......+..++.++. .. +..+|.+|+.++
T Consensus 138 laral~~~p~llllDEPt~~L--------D~~~~~~~~~~l~~~~---~~-~~tili~sH~~~ 188 (190)
T TIGR01166 138 IAGAVAMRPDVLLLDEPTAGL--------DPAGREQMLAILRRLR---AE-GMTVVISTHDVD 188 (190)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeeccc
Confidence 444555679999999953322 2223444455555543 12 335556666554
No 338
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=49.61 E-value=29 Score=29.17 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEec
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatT 89 (235)
+-..++...|.+|+||.+..+....... ......+..++..|..+....++.++.++
T Consensus 132 i~~~~~~~~~~~vvID~l~~l~~~~~~~---~~~~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 132 VRYMAVSHGIQHIIIDNLSIMVSDERAS---GDERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHhcCCceEEEECCHHHHhccCCCc---hhHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3334456779999999999986543211 11223344555555544334444444443
No 339
>PRK10263 DNA translocase FtsK; Provisional
Probab=49.38 E-value=27 Score=36.51 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=53.3
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--cccHHhhCCCcccEEEEcCCCCHH
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD--DLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~--~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
-||+|||+..|..... . -+..++..|-.....-+|.+|.+|.+|+ .|...++. -|..+|-|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~-----k----evE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG-----K----KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh-----H----HHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCCHH
Confidence 4899999988865321 1 1334444444444567899999999986 57777777 78888888888888
Q ss_pred HHHHHHHH
Q psy10044 118 GRREILDL 125 (235)
Q Consensus 118 ~R~~il~~ 125 (235)
+-..||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 77777754
No 340
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=49.13 E-value=80 Score=27.76 Aligned_cols=75 Identities=16% Similarity=0.319 Sum_probs=46.9
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC-eEEEEecCCCC----cccHHhhCCCcccEEEEcC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG-VVVLGATNRRD----DLDKALLRPGRFDIEVNVP 112 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vIatTn~~~----~ld~al~rpgRf~~~i~i~ 112 (235)
.|-||+|+|+|++- ..+++.|+..+.....+=+ ++|+|-+..++ .|+....+ ++.-.. |.
T Consensus 199 ~~lVIi~eD~EsF~------------~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~--~L~~~~-F~ 263 (330)
T PF07034_consen 199 PPLVIIFEDFESFD------------SQVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLS--LLRIKK-FQ 263 (330)
T ss_pred CCEEEEEcccccCC------------HHHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHh--hcCceE-EE
Confidence 48999999999983 3488899988887655555 44555444443 46777776 665332 34
Q ss_pred CC-CHHHHHHHHHHHh
Q psy10044 113 PP-DYTGRREILDLYL 127 (235)
Q Consensus 113 ~P-~~~~R~~il~~~l 127 (235)
.+ ....-..+++..+
T Consensus 264 ~~~~~~~l~~v~~~~l 279 (330)
T PF07034_consen 264 LQSSSEILERVLEKVL 279 (330)
T ss_pred eCChHHHHHHHHHHHh
Confidence 33 3344444555554
No 341
>PF13265 DUF4056: Protein of unknown function (DUF4056)
Probab=48.90 E-value=61 Score=27.61 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=53.3
Q ss_pred cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHh------------cCCCCCHHHHHHHHHHHH-
Q psy10044 94 DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLAR------------GTTGFTGADLENMVNQAA- 160 (235)
Q Consensus 94 ~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~------------~t~G~s~~di~~l~~~A~- 160 (235)
.|++.|.. -|+...-..++-+..||..+--.....+-..-..|.++|+ ....||+.|+..=+--|.
T Consensus 111 ~L~~EL~~-R~I~~~~~tp~~s~~eR~~lsa~lAa~lAf~lA~WHEIAQWyG~~Sv~GfsE~~SAFSpEDLYSNlLGArL 189 (270)
T PF13265_consen 111 TLSEELAE-RRIQFNAFTPPLSPAERYTLSAYLAARLAFQLAQWHEIAQWYGYQSVPGFSEGISAFSPEDLYSNLLGARL 189 (270)
T ss_pred ecchhhCc-ceEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCCCcccccCCHHHhhhhHHHHHH
Confidence 35566653 1444332233447778776655444433222233555554 445699999976555553
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 161 LRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
..++....+.++.+.+.+|+.+..+.
T Consensus 190 A~~lil~g~~~s~~~f~~am~~~l~~ 215 (270)
T PF13265_consen 190 ALSLILQGPALSVEQFNQAMTQALPQ 215 (270)
T ss_pred HHHHHHcCcccCHHHHHHHHHHHHHH
Confidence 23344556678889999888777654
No 342
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.62 E-value=58 Score=29.91 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc-cHHh
Q psy10044 23 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL-DKAL 99 (235)
Q Consensus 23 ~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l-d~al 99 (235)
.|.++.++.+.+....|.+++||-|..++...-++ ++-+..+...+.|...-. ..+-.+++++-...--.| =|.+
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrv 230 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRV 230 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchh
Confidence 47789999999999999999999999999876322 222233444444443333 123345666665543322 2222
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHh
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYL 127 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l 127 (235)
+- +-.|..++|.- +...+.+|++.+-
T Consensus 231 LE-HmVDtVlyFEG-d~~~~~RiLR~vK 256 (456)
T COG1066 231 LE-HMVDTVLYFEG-DRHSRYRILRSVK 256 (456)
T ss_pred ee-eeeeEEEEEec-cCCCceeeeehhc
Confidence 22 23555555543 3334455555443
No 343
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=48.50 E-value=51 Score=22.07 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-+..++..|...|--+++..+..+|+.-++++.
T Consensus 34 ~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 34 DFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3456777777777777888899999999999886
No 344
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=48.39 E-value=79 Score=25.70 Aligned_cols=66 Identities=17% Similarity=0.055 Sum_probs=35.9
Q ss_pred hhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 18 VLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 18 ~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
.+.++- +++..++..+ ..|+++++||...=.. ......+...++..+... +..+|.+|...+..+.
T Consensus 91 ~fs~e~-~~~~~il~~~--~~~~lvllDE~~~gt~-------~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 91 TFASEM-SETAYILDYA--DGDSLVLIDELGRGTS-------SADGFAISLAILECLIKK----ESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHH-HHHHHHHHhc--CCCcEEEeccccCCCC-------HHHHHHHHHHHHHHHHhc----CCEEEEECChHHHHHH
Confidence 334333 3456665544 4589999999744111 111222334445554422 4477778887776654
No 345
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=47.81 E-value=44 Score=27.06 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHH-HHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEE
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ-TINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEV 109 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~-~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i 109 (235)
+..|-...|.++++||-.+-+. ..... .+..++.++. .....-+|.+|+.++ +.. .+|+.+
T Consensus 132 la~al~~~p~illlDEP~~~LD--------~~~~~~~l~~~l~~~~---~~~~~~iiiitH~~~-----~~~--~~d~i~ 193 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLD--------EENIEESLAEIIEERK---SQKNFQLIVITHDEE-----LVD--AADHIY 193 (204)
T ss_pred HHHHhccCCCEEEEcCCccccC--------HHHHHHHHHHHHHHHH---hccCCEEEEEEecHH-----HHh--hCCEEE
Confidence 3444456799999999765432 11222 3334444332 221334555666543 334 567777
Q ss_pred EcC
Q psy10044 110 NVP 112 (235)
Q Consensus 110 ~i~ 112 (235)
.+.
T Consensus 194 ~l~ 196 (204)
T cd03240 194 RVE 196 (204)
T ss_pred EEe
Confidence 663
No 346
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.64 E-value=82 Score=25.21 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||-.+=+ +......+..++..+. .. +..+|.+|.+++.++
T Consensus 140 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~i~ 193 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAI--------DKQGVARLEALLAQHA---EQ-GGMVILTTHQDLPVA 193 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEecChhhhc
Confidence 344555679999999964322 2223444445555542 12 235667888777776
No 347
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=47.55 E-value=43 Score=26.87 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|....|.++++||--+=+ +......+..++..+.. . +..+|.+|+.++.+
T Consensus 146 la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~---~-~~tvi~~sh~~~~~ 198 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSAL--------DPELVGEVLDVMKDLAE---E-GMTMVVVTHEMGFA 198 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCC--------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 344455679999999954422 23344555566655542 1 23566677766544
No 348
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=46.77 E-value=12 Score=29.87 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHH
Q psy10044 199 NMITAYHEGGHAV 211 (235)
Q Consensus 199 ~~~~a~~e~gha~ 211 (235)
...+..||.|||+
T Consensus 113 ~~~t~~HEiGHaL 125 (186)
T cd04277 113 GYQTIIHEIGHAL 125 (186)
T ss_pred hHHHHHHHHHHHh
Confidence 3457899999998
No 349
>PLN00035 histone H4; Provisional
Probab=46.46 E-value=46 Score=24.24 Aligned_cols=34 Identities=24% Similarity=0.161 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-++.++.+|...+--.++..|+.+|+..|++++
T Consensus 61 ~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~ 94 (103)
T PLN00035 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHc
Confidence 3445566666666666688899999999999877
No 350
>PF14350 Beta_protein: Beta protein
Probab=46.46 E-value=1e+02 Score=27.15 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=47.8
Q ss_pred EEeccchhhhhhccHHHHHHHHHHHHHh-hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEE
Q psy10044 8 NHAQGPEFDEVLVGQGARRVRDLFKAAK-DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 86 (235)
Q Consensus 8 ~~v~~s~l~~~~~g~~~~~i~~~F~~A~-~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vI 86 (235)
+.+...++.+ ......|..+..... ....+.|+||--+..... .......+..++..+..+ ..-.-++|
T Consensus 126 iRl~~~~~~~---~~~~~~i~~i~~~l~~~~~~~~lilD~~~i~~~~------~~~~~~~~~~~l~~l~~~-~~~~~v~v 195 (347)
T PF14350_consen 126 IRLRPDDLDD---DDFPSEISRILAALGLSPNEVDLILDLGDIRDSD------ESAVAEAIIRALNSLPSL-FPWRSVIV 195 (347)
T ss_pred EEeecccccc---hhHHHHHHHHHHHcCCCccceEEEEECCccCCcc------hHHHHHHHHHHHHhhhhc-cCCeEEEE
Confidence 3444444433 455677777777776 233478888875543221 112233344456666554 23446778
Q ss_pred EecCCCCcccHHhh
Q psy10044 87 GATNRRDDLDKALL 100 (235)
Q Consensus 87 atTn~~~~ld~al~ 100 (235)
++|..|..+.....
T Consensus 196 ~~tSfP~s~~~~~~ 209 (347)
T PF14350_consen 196 AGTSFPSSISGIPK 209 (347)
T ss_pred EecccCCccccccc
Confidence 89999998876654
No 351
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=45.89 E-value=52 Score=25.87 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+-+ +......+.+++..+.. . +..+|.+|.+++.+.
T Consensus 115 la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~~~ 168 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGV--------DVGAKAEIYRLIRELAD---A-GKAVLLISSELDELL 168 (182)
T ss_pred HHHHHccCCCEEEECCCCcCC--------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 455556789999999954422 23344455555555531 2 235666777655443
No 352
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=45.75 E-value=50 Score=28.63 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
+..|-...|.+|++||=-+ +-+......+..++.++. . .+..+|.+|+..+.+..
T Consensus 149 la~aL~~~P~lllLDEPt~--------gLD~~~~~~l~~~l~~l~---~-~g~till~sH~l~e~~~ 203 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTT--------GLDPQARHLMWERLRSLL---A-RGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHHHhCCCCEEEEeCCCc--------CCCHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHHHH
Confidence 4555667899999999432 123334455555666553 1 24577788887776643
No 353
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=45.55 E-value=1.2e+02 Score=23.95 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=25.4
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
..|.++++||.+.-+... ....+..++..+. .+ +..+|.+|.+++
T Consensus 115 ~~p~llilDEp~~~LD~~--------~~~~i~~~L~~~~---~~-g~tiIiiSH~~~ 159 (178)
T cd03239 115 KPSPFYVLDEIDAALDPT--------NRRRVSDMIKEMA---KH-TSQFIVITLKKE 159 (178)
T ss_pred CCCCEEEEECCCCCCCHH--------HHHHHHHHHHHHH---hC-CCEEEEEECCHH
Confidence 578999999988754322 2333334444442 12 235666676544
No 354
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=45.45 E-value=12 Score=28.22 Aligned_cols=10 Identities=60% Similarity=0.740 Sum_probs=9.3
Q ss_pred HHHHHHHHHH
Q psy10044 202 TAYHEGGHAV 211 (235)
Q Consensus 202 ~a~~e~gha~ 211 (235)
++.||.|||+
T Consensus 89 ~~~HEigHaL 98 (140)
T smart00235 89 VAAHELGHAL 98 (140)
T ss_pred cHHHHHHHHh
Confidence 6899999998
No 355
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=45.07 E-value=40 Score=34.57 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccc
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAK 53 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~ 53 (235)
..++++|. ..||+|+|||+=..+.+
T Consensus 90 ~~L~eLl~----~~P~LILiDEl~~Y~~~ 114 (1035)
T PF04465_consen 90 DVLRELLG----GRPVLILIDELVAYARQ 114 (1035)
T ss_pred HHHHHHhC----CCCEEEEeecHHHHHHH
Confidence 45666664 35999999999888773
No 356
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=45.06 E-value=14 Score=37.01 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=56.2
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc-ccHHhhCCCcccEEEEcCCCCHH
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD-LDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~-ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
.-+++|||++.|...... -+...+..|-......++-+|.||.+|+. +-+.++. .|...|.|..-+..
T Consensus 640 ~iviiiDe~adlm~~~~k---------~ve~~i~rLa~~ara~GIHlilatqRps~dVit~ika--nipsrIaf~v~s~~ 708 (858)
T COG1674 640 YIVIIIDEYADLMMVAGK---------ELEELIARLAQKGRAAGIHLILATQRPSVDVITGIKA--NIPTRIALRLSSKI 708 (858)
T ss_pred eEEEEEcchHHHhhhhhH---------HHHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHh--CCcceEEEEEcCcc
Confidence 478999999999763211 14445555544455678999999999987 7777777 88899999988888
Q ss_pred HHHHHHH
Q psy10044 118 GRREILD 124 (235)
Q Consensus 118 ~R~~il~ 124 (235)
+-..|+.
T Consensus 709 dsr~il~ 715 (858)
T COG1674 709 DSRLILG 715 (858)
T ss_pred ceeeecc
Confidence 8888877
No 357
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=44.71 E-value=51 Score=26.86 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.++++||--+-+ +......+..++..+.. .+..+|.+|+.++.+.
T Consensus 143 ~la~al~~~p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~~~ 197 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGV--------DPIAVQDIQKIIKILKD----RGIGVLITDHNVRETL 197 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccC--------CHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHH
Confidence 3445556779999999954322 22334455556655532 2345667777665443
No 358
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=44.63 E-value=29 Score=30.58 Aligned_cols=67 Identities=7% Similarity=0.067 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccccccCCC---CCC--ccHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS---VLH--PYANQTINQLLAEMDGFHQNEGVVVLGATN 90 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~---~~~--~~~~~~~~~ll~~ld~~~~~~~v~vIatTn 90 (235)
+..+..+....+...+.+|+||-+-++.....-. +++ ....+.++.++..+.++-...++.+|.+..
T Consensus 119 eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 119 EQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred HHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4445555555667789999999999998642211 111 123355566776666665566777776643
No 359
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.52 E-value=1.1e+02 Score=30.54 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCc
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGR 104 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgR 104 (235)
+++..+...+ ..|+++++||+-+=.. ......+...++..+.. .+..+|.+|++++....+.-+++-
T Consensus 396 ~~~~~Il~~~--~~~sLvLlDE~~~GtD-------p~eg~ala~aile~l~~----~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 396 TNIVRILEKA--DKNSLVLFDELGAGTD-------PDEGAALAISILEYLRK----RGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred HHHHHHHHhC--CcCcEEEecCCCCCCC-------HHHHHHHHHHHHHHHHH----CCCEEEEECChHHHHHHHhcCCCe
Confidence 4444444444 5689999999744211 11122333445555432 245788889886654444333332
Q ss_pred -------------ccEEEEcCCCCHHHHHHHHHHH
Q psy10044 105 -------------FDIEVNVPPPDYTGRREILDLY 126 (235)
Q Consensus 105 -------------f~~~i~i~~P~~~~R~~il~~~ 126 (235)
+.+.+..+.|...--..+.+.+
T Consensus 463 ~~~~~~~d~~~l~~~Ykl~~G~~g~S~a~~iA~~~ 497 (782)
T PRK00409 463 ENASVEFDEETLRPTYRLLIGIPGKSNAFEIAKRL 497 (782)
T ss_pred EEEEEEEecCcCcEEEEEeeCCCCCcHHHHHHHHh
Confidence 2245555666555555554433
No 360
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=44.47 E-value=43 Score=27.44 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.|+++||--+=+ +......+..++..+. ...+..+|.+|+.++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNL--------DARNADSIFQLLGELN---RLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCC--------CHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHH
Confidence 445555779999999954422 2233444455555542 122346667777665543
No 361
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=44.26 E-value=50 Score=26.43 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|..++.+
T Consensus 137 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~ 189 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGL--------DYKNMERVGELIRELA---AQ-GKAVIVITHDYEFL 189 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 444555679999999954322 2233444555555542 12 33566677765544
No 362
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=44.22 E-value=58 Score=28.10 Aligned_cols=69 Identities=26% Similarity=0.355 Sum_probs=40.1
Q ss_pred hhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 16 DEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 16 ~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
...+.+.-.+++. +..|-...|.++++||=-+ +-+......+.+++..+. ...+..|+.+|..++.+
T Consensus 134 ~~~lS~G~kqrl~--ia~aL~~~P~lliLDEPt~--------GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~l~e~ 200 (293)
T COG1131 134 VRTLSGGMKQRLS--IALALLHDPELLILDEPTS--------GLDPESRREIWELLRELA---KEGGVTILLSTHILEEA 200 (293)
T ss_pred hhhcCHHHHHHHH--HHHHHhcCCCEEEECCCCc--------CCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcHHHH
Confidence 3444554444443 3455567799999999322 223334444445554444 34446788899888776
Q ss_pred cH
Q psy10044 96 DK 97 (235)
Q Consensus 96 d~ 97 (235)
..
T Consensus 201 ~~ 202 (293)
T COG1131 201 EE 202 (293)
T ss_pred HH
Confidence 54
No 363
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=43.91 E-value=54 Score=26.41 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+-+ +......+..++.++. .. +..+|.+|.+++.+
T Consensus 149 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~ 201 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNL--------DPELSRDIMRLFEEFN---RR-GTTVLVATHDINLV 201 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 444555679999999954322 2233444445555543 12 33566677766544
No 364
>PRK08939 primosomal protein DnaI; Reviewed
Probab=43.77 E-value=44 Score=29.12 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=38.2
Q ss_pred CCeeEEeccchhhhhhccH-HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHH-HHHHHHHHH-hcCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQ-GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN-QTINQLLAE-MDGFHQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~-~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~-~~~~~ll~~-ld~~~~~ 80 (235)
|.+...+..++|+...... ....+...++..+ ...+|+|||+.+-.. +.+.. .++..++.. +.
T Consensus 184 g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~-------s~~~~~~ll~~Il~~R~~----- 249 (306)
T PRK08939 184 GVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM-------SSWVRDEVLGVILQYRMQ----- 249 (306)
T ss_pred CCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-------cHHHHHHHHHHHHHHHHH-----
Confidence 4555666666766543221 1112334444433 457999999966321 22222 244444432 22
Q ss_pred CCeEEEEecCCC
Q psy10044 81 EGVVVLGATNRR 92 (235)
Q Consensus 81 ~~v~vIatTn~~ 92 (235)
.+.-+|.|||.+
T Consensus 250 ~~~~ti~TSNl~ 261 (306)
T PRK08939 250 EELPTFFTSNFD 261 (306)
T ss_pred CCCeEEEECCCC
Confidence 234677799965
No 365
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=43.73 E-value=1.1e+02 Score=24.37 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=31.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|+++..++.
T Consensus 136 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~~ 190 (201)
T cd03231 136 LARLLLSGRPLWILDEPTTAL--------DKAGVARFAEAMAGHC---AR-GGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHhcCCCEEEEeCCCCCC--------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCchhhhh
Confidence 455556779999999964432 2223334444444432 12 3356667777766654
No 366
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=43.64 E-value=34 Score=26.15 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=31.6
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~ 113 (235)
..++++||+|.+... ........++..+ .. ..-+++.+++-+...+..... .+...+.+..
T Consensus 130 ~~~iIiDE~h~~~~~--------~~~~~~~~~~~~~---~~-~~~~v~~saT~~~~~~~~~~~--~~~~~~~~~~ 190 (201)
T smart00487 130 VDLVILDEAHRLLDG--------GFGDQLEKLLKLL---PK-NVQLLLLSATPPEEIENLLEL--FLNDPVFIDV 190 (201)
T ss_pred CCEEEEECHHHHhcC--------CcHHHHHHHHHhC---Cc-cceEEEEecCCchhHHHHHHH--hcCCCEEEeC
Confidence 458999999998752 1122333444433 22 233444455555566665555 4434444433
No 367
>PRK06921 hypothetical protein; Provisional
Probab=43.64 E-value=62 Score=27.55 Aligned_cols=43 Identities=14% Similarity=-0.064 Sum_probs=23.5
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccc
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDS 49 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~ 49 (235)
|...++++..+++...... .......++.. ....+|+|||++.
T Consensus 146 g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 146 GVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 5666777776765543221 11222222332 3458999999944
No 368
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=43.59 E-value=31 Score=33.03 Aligned_cols=108 Identities=27% Similarity=0.389 Sum_probs=56.2
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHh--------cCCCCCCCeEEEEecCCCCcccHHhhCCCcccE----
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM--------DGFHQNEGVVVLGATNRRDDLDKALLRPGRFDI---- 107 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~l--------d~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~---- 107 (235)
-.+|+|||..+.- .+-+.||.-+ ++-..+-.|-||+||++.= ..+.+-|||-.
T Consensus 409 GtlFldeIgd~p~------------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyy 473 (606)
T COG3284 409 GTLFLDEIGDMPL------------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYY 473 (606)
T ss_pred CccHHHHhhhchH------------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHH
Confidence 4788888876632 1223333332 2222223488999998743 36778888852
Q ss_pred -----EEEcCCC-CHHHHHHHHHHHhcCccCC--CCCHHHHHhcCC-CC--CHHHHHHHHHHHHHH
Q psy10044 108 -----EVNVPPP-DYTGRREILDLYLGKIVSK--NIDVDTLARGTT-GF--TGADLENMVNQAALR 162 (235)
Q Consensus 108 -----~i~i~~P-~~~~R~~il~~~l~~~~~~--~~~l~~la~~t~-G~--s~~di~~l~~~A~~~ 162 (235)
.|++|+. +..+|...+..++.+.... .++-+.++.... -+ .-++|.++++.+...
T Consensus 474 rL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 474 RLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred HhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 3444433 4445555666666443222 223233333221 12 346777777765543
No 369
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=43.26 E-value=1.4e+02 Score=30.11 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH-----HhhCCCccc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK-----ALLRPGRFD 106 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~-----al~rpgRf~ 106 (235)
+.+....|.++++||....+.. ......+...+..+.. .+..++.+|.+++++.. +++. -.+
T Consensus 681 ~~~l~~~p~illlDE~w~~L~d-------~~~~~~i~~~lk~~RK----~g~~vil~TQs~~d~~~s~i~~~ile--n~~ 747 (852)
T PRK13891 681 ERALKGQPAVIILDEAWLMLGH-------PAFRAKIREWLKVLRK----ANCLVLMATQSLSDAANSGILDVIVE--STA 747 (852)
T ss_pred HHHhcCCCCEEEEeCchhhcCC-------HHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHhhCchHHHHHH--cCC
Confidence 3344567999999998877642 1233344455554432 23466667776665532 2222 234
Q ss_pred EEEEcCCCC
Q psy10044 107 IEVNVPPPD 115 (235)
Q Consensus 107 ~~i~i~~P~ 115 (235)
..|.++.|.
T Consensus 748 t~I~Lpn~~ 756 (852)
T PRK13891 748 TKIFLPNVY 756 (852)
T ss_pred cceecCCCc
Confidence 455565553
No 370
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=42.64 E-value=59 Score=26.12 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=30.1
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+-+ +......+..++..+.. . +..+|.+|.+++.+.
T Consensus 148 la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~---~-~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNL--------DPDLSERILDLLKRLNK---R-GTTVIVATHDLSLVD 201 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHHH
Confidence 344455679999999964422 23344455555555431 2 235666777655443
No 371
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=42.27 E-value=86 Score=25.12 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=30.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+-+ +......+..++..+. .. ...+|.+|++++.++
T Consensus 147 laral~~~p~llllDEPt~~L--------D~~~~~~~~~~l~~~~---~~-~~tiiivtH~~~~~~ 200 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNL--------DPDTTWEIMNLLKKIN---KA-GTTVVVATHAKELVD 200 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcC--------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 444555779999999964422 2233445555555543 12 335666777655443
No 372
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=42.25 E-value=90 Score=24.67 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=26.1
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
..|+++++||.-+=.. ......+...++..+.. ..+..+|.+|+..+
T Consensus 77 ~~~~llllDEp~~g~d-------~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 77 TENSLVLLDELGRGTS-------TYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred CCCeEEEEecCCCCCC-------HHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 3689999999755322 11123344455555432 12345667887764
No 373
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=42.20 E-value=76 Score=31.32 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=42.5
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH-----HhhCCCcccEEEEc
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK-----ALLRPGRFDIEVNV 111 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~-----al~rpgRf~~~i~i 111 (235)
..|.+++|||++.+.... ++.....+..+..... +.+..++.+|-+++++.. +++. -.+..|.+
T Consensus 636 ~~~~~~viDEaw~ll~~~-----~~~~~~~i~~~~r~~R----K~g~~~~~~TQ~~~D~~~~~~~~~il~--n~~~~i~L 704 (797)
T TIGR02746 636 KRRKICIIDEAWSLLDGA-----NPQAADFIETGYRRAR----KYGGAFITITQGIEDFYSSPEARAAYA--NSDWKIIL 704 (797)
T ss_pred CCceEEEEecHHHHhhcc-----cHHHHHHHHHHHHHHh----hcCceEEEEEecHHHhccCHHHHHHHh--cccceeee
Confidence 458999999999998621 2223344444444443 456678888988887743 4444 45556666
Q ss_pred CCC
Q psy10044 112 PPP 114 (235)
Q Consensus 112 ~~P 114 (235)
+.+
T Consensus 705 ~~~ 707 (797)
T TIGR02746 705 RQS 707 (797)
T ss_pred cCC
Confidence 654
No 374
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=42.13 E-value=88 Score=25.35 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.++++||--+=+ +......+..++..+. . .+..+|.+|++++.++
T Consensus 134 ~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~L~~~~---~-~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGL--------DPIGIQELRELIRSFP---E-QGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCC--------CHHHHHHHHHHHHHHH---H-CCCEEEEEcCCHHHHH
Confidence 3445556779999999954422 2233445555555543 1 2335667777766554
No 375
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=41.85 E-value=88 Score=26.65 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
|-++..|-...|.++++||==. +-+......+-.+|.++. .. +..|+..|.+...+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~--------gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT--------GVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc--------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHHh
Confidence 3456778888899999999311 112233444445555544 44 56777777766544
No 376
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=41.81 E-value=20 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q psy10044 201 ITAYHEGGHAVVAFFTKDS 219 (235)
Q Consensus 201 ~~a~~e~gha~~~~~~~~~ 219 (235)
.+..||.||++++...+-.
T Consensus 120 sv~iHElgHa~~Ar~~G~~ 138 (263)
T cd06159 120 GVVVHELSHGILARVEGIK 138 (263)
T ss_pred HHHHHHHHHHHHHHHcCCE
Confidence 3679999999999876544
No 377
>KOG2170|consensus
Probab=41.75 E-value=2.5e+02 Score=24.86 Aligned_cols=142 Identities=10% Similarity=0.146 Sum_probs=63.7
Q ss_pred HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHH---HhcCCCCCCCeEEEEecCCCC-cccH---HhhCCCc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLA---EMDGFHQNEGVVVLGATNRRD-DLDK---ALLRPGR 104 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~---~ld~~~~~~~v~vIatTn~~~-~ld~---al~rpgR 104 (235)
..+..++.+|.++||.|.+-+ ..-..+.-||. +.+|.+. .+.++|.-+|.-. .|.. ...+.|+
T Consensus 172 ~~v~~C~rslFIFDE~DKmp~---------gLld~lkpfLdyyp~v~gv~f-rkaIFIfLSN~gg~eI~~~aL~~~~~g~ 241 (344)
T KOG2170|consen 172 GTVQACQRSLFIFDEVDKLPP---------GLLDVLKPFLDYYPQVSGVDF-RKAIFIFLSNAGGSEIARIALENARNGK 241 (344)
T ss_pred HHHHhcCCceEEechhhhcCH---------hHHHHHhhhhccccccccccc-cceEEEEEcCCcchHHHHHHHHHHHcCC
Confidence 345567779999999999832 22333444443 2233333 3445555555433 3332 2234455
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 105 FDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTT---GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 105 f~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~---G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
--..+.+..-...-....+..--.....+..--..+.+..- =+..+++...++..+. +++ ...+++-+++.++
T Consensus 242 ~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~---~rg-~~~d~~~~erva~ 317 (344)
T KOG2170|consen 242 PREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELR---KRG-LAPDQDFVERVAN 317 (344)
T ss_pred CcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHH---hcc-cccchHHHHHHHH
Confidence 44444443322222222222111111111111222222211 1344555555543332 122 4566777777777
Q ss_pred HhhCCc
Q psy10044 182 KVLMGP 187 (235)
Q Consensus 182 ~~~~~~ 187 (235)
...+-+
T Consensus 318 ~l~ffp 323 (344)
T KOG2170|consen 318 SLSFFP 323 (344)
T ss_pred hhcccc
Confidence 666544
No 378
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=41.74 E-value=1.2e+02 Score=28.79 Aligned_cols=75 Identities=23% Similarity=0.186 Sum_probs=40.7
Q ss_pred hhccHHHHHHHHHHHHHhhC--CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 18 VLVGQGARRVRDLFKAAKDR--TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 18 ~~~g~~~~~i~~~F~~A~~~--~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+.|.-.+++.-....+... .|.+++|||.++=... .....+..++..+. . +.-||.+|..+...
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~--------~~~~~~~~~l~~l~---~--~~~vi~iTH~~~~~ 506 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSG--------ETAQAIAKKLAQLS---E--RHQVLCVTHLPQVA 506 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCH--------HHHHHHHHHHHHHh---c--CCEEEEEEChHHHH
Confidence 34444445454444444332 3689999999885432 23344555555553 1 24566778765433
Q ss_pred cHHhhCCCcccEEEEcC
Q psy10044 96 DKALLRPGRFDIEVNVP 112 (235)
Q Consensus 96 d~al~rpgRf~~~i~i~ 112 (235)
. ..|+++.+.
T Consensus 507 -----~--~ad~~~~l~ 516 (563)
T TIGR00634 507 -----A--HADAHFKVE 516 (563)
T ss_pred -----H--hcCeEEEEE
Confidence 2 445555553
No 379
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=41.63 E-value=66 Score=25.86 Aligned_cols=53 Identities=25% Similarity=0.309 Sum_probs=29.3
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+=+ +......+..++..+.. .+..+|.+|.+++.+
T Consensus 143 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~----~~~tvi~~sH~~~~~ 195 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGV--------DPKTQEDIYELLRELRR----EGMTILVVTHDLGLV 195 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHH
Confidence 334445679999999953321 22334445555555432 233566677765544
No 380
>PHA00520 packaging NTPase P4
Probab=41.50 E-value=28 Score=30.35 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=44.5
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~ 91 (235)
.-+||++|-+-.+...-.+...+....+..-.||+.++.+-...+++||++-|.
T Consensus 183 ~v~VvvvDSlr~vl~~~~GnatsGGISr~~~~~LTdl~~iaas~gc~vV~~lNP 236 (330)
T PHA00520 183 DVDVVVVDSLRNVLFELGGNATSGGISRGAYGLLTDLGNIAASRGCRVVATLNP 236 (330)
T ss_pred hceEEEEechHHHHhhhccCCCCCcchHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 358999999998887776665566777888999999999877788899988885
No 381
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=40.75 E-value=1.6e+02 Score=22.81 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+-.+..|-...|.++++||--+=+ +......+.+++..+. . +..+|.+|+.++.+
T Consensus 106 rv~laral~~~p~~lllDEP~~~L--------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 160 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGL--------DPITERQLLSLIFEVL---K--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccC--------CHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 344556666789999999965432 2223444445555442 2 23556677766554
No 382
>PRK10869 recombination and repair protein; Provisional
Probab=40.75 E-value=2.3e+02 Score=26.99 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=44.3
Q ss_pred hhccHHHHHHHHHHHHHhh--CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 18 VLVGQGARRVRDLFKAAKD--RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 18 ~~~g~~~~~i~~~F~~A~~--~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+.|.-..++.-.+..+.. ..|.++++||+|+=...+ ....+..++..+. .. .-||..|..|.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~--------~~~~v~~~l~~l~---~~--~qvi~iTH~~~-- 494 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGP--------TAAVVGKLLRQLG---ES--TQVMCVTHLPQ-- 494 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHH--------HHHHHHHHHHHHh---cC--CEEEEEecCHH--
Confidence 3456666677766666653 357899999999855422 2334445555553 22 34566777654
Q ss_pred cHHhhCCCcccEEEEcC
Q psy10044 96 DKALLRPGRFDIEVNVP 112 (235)
Q Consensus 96 d~al~rpgRf~~~i~i~ 112 (235)
+.+ ..|+++.+.
T Consensus 495 ---~~~--~ad~~~~v~ 506 (553)
T PRK10869 495 ---VAG--CGHQHFFVS 506 (553)
T ss_pred ---HHH--hCCEEEEEe
Confidence 233 556666664
No 383
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.66 E-value=84 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=30.4
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+=+ +......+..++.++. . .+..+|.+|+.++.+
T Consensus 147 laral~~~p~lllLDEPt~gL--------D~~~~~~l~~~l~~l~---~-~g~til~~tH~~~~~ 199 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSML--------DPDSGIAVLERIKKLH---E-KGKTIVYITHNLEEL 199 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---h-CCCEEEEEecCHHHH
Confidence 455556789999999964422 2223334444444443 2 234666778776655
No 384
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=40.62 E-value=61 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|.+++.++
T Consensus 163 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~l~---~~-g~tiiivsH~~~~~~ 216 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSAL--------DPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGFAR 216 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 445556779999999954322 2233445555555553 12 345666777666554
No 385
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=40.50 E-value=45 Score=29.94 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=29.1
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
.++||||+|+|--..+ ..+..-+ ..........+..|+..+..++..+..
T Consensus 204 D~liIDEVDAFP~~~d---------~~L~~Av---~~ark~~g~~IylTATp~k~l~r~~~~ 253 (441)
T COG4098 204 DLLIIDEVDAFPFSDD---------QSLQYAV---KKARKKEGATIYLTATPTKKLERKILK 253 (441)
T ss_pred cEEEEeccccccccCC---------HHHHHHH---HHhhcccCceEEEecCChHHHHHHhhh
Confidence 6999999999965321 1222222 222233445666677777777666543
No 386
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=40.43 E-value=65 Score=26.36 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=30.3
Q ss_pred HhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEec
Q psy10044 34 AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 34 A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatT 89 (235)
++...|.+|+||-+..+..... .......+..++..|..+....++.+|.++
T Consensus 119 ~~~~~~~~vvID~l~~l~~~~~----~~~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSGSKK----KGNRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHhcCCCEEEEcCchhcCCCCC----CCCHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 3455889999999998854321 111233455556666555444455555555
No 387
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=40.15 E-value=49 Score=28.42 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHh--hCCCeEEEEccccccccccC
Q psy10044 24 ARRVRDLFKAAK--DRTPCVVFIDEIDSVGAKRT 55 (235)
Q Consensus 24 ~~~i~~~F~~A~--~~~P~Il~iDeiD~l~~~r~ 55 (235)
...+..+.+.+. ...|.||+|||-|+...+.-
T Consensus 127 ~~~l~~li~~l~~~~~~kvvlLIDEYD~p~~~~~ 160 (284)
T PF09820_consen 127 ADSLKDLIEYLYEKYGKKVVLLIDEYDKPINDAL 160 (284)
T ss_pred HHHHHHHHHHHHHHhCCceEEEecCccHHHHHHh
Confidence 334444444432 24589999999999887653
No 388
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=40.08 E-value=61 Score=26.20 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+=+ +......+..++..+. .+.+..+|.+|.+++.+
T Consensus 151 ~laral~~~p~illlDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNL--------DNNNAKIIFDLMLELN---RELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 3444555679999999954322 2233444455555442 12234566777766543
No 389
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.99 E-value=69 Score=25.65 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=30.5
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+=+ +......+..++..+. .+ +..+|.+|.+++.+
T Consensus 139 la~al~~~p~~lllDEP~~~L--------D~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~ 191 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGL--------DPVNVELLKDVIRELA---RA-GKTVILSTHQMELV 191 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 455556779999999964422 2233444445555543 12 34667778766544
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=39.93 E-value=1.2e+02 Score=24.42 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=29.2
Q ss_pred hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 36 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 36 ~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
...|.++++||-.+-+.. .....+.+++..+-. ..+....+|.+|+.++.+.
T Consensus 129 ~~~p~illlDEP~~glD~--------~~~~~~~~~l~~~~~-~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 129 VMESPFRCLDEFDVFMDM--------VNRKISTDLLVKEAK-KQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCCEEEecCcccccCH--------HHHHHHHHHHHHHHh-cCCCcEEEEEECCcccccc
Confidence 368999999997664431 223333334444321 1112346777888877765
No 391
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=39.91 E-value=2.3e+02 Score=23.90 Aligned_cols=73 Identities=8% Similarity=0.124 Sum_probs=47.6
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
.+++|++||+-. + ......+..+... .+.-++-+|..+.....||+.++. -.+..+-++ -+..
T Consensus 98 ~~~LiIlDD~~~---~-------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~ 160 (241)
T PF04665_consen 98 PRFLIILDDLGD---K-------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKR 160 (241)
T ss_pred CCeEEEEeCCCC---c-------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEec-CcHH
Confidence 378999999621 0 0112234445432 233468888999999999999987 788777665 4666
Q ss_pred HHHHHHHHHh
Q psy10044 118 GRREILDLYL 127 (235)
Q Consensus 118 ~R~~il~~~l 127 (235)
....|++.+.
T Consensus 161 dl~~i~~~~~ 170 (241)
T PF04665_consen 161 DLENIYRNMN 170 (241)
T ss_pred HHHHHHHhcc
Confidence 6666666553
No 392
>KOG2383|consensus
Probab=39.89 E-value=42 Score=30.68 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=24.1
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR 92 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~ 92 (235)
++|+|||+..- +-..--+++.|...+= +++|+++||+|+.
T Consensus 195 ~lLCFDEfQVT---------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~ 234 (467)
T KOG2383|consen 195 ILLCFDEFQVT---------DVADAMILKRLFEHLF----KNGVVLVATSNRA 234 (467)
T ss_pred eeeeechhhhh---------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCC
Confidence 78999997541 0011224455554443 3588999999983
No 393
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.81 E-value=60 Score=27.76 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.||++||--+-+ +......+..++..+. . .+..||.+|.+++.+.
T Consensus 154 aiA~aL~~~p~illLDEPt~gL--------D~~~~~~l~~~l~~l~---~-~g~til~vtHd~~~~~ 208 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTAGL--------DPKARIEMMQLFESIH---Q-SGQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHHHhCCCEEEEECCccCC--------CHHHHHHHHHHHHHHH---H-CCCEEEEEecCHHHHH
Confidence 3455556789999999964422 2233445555555553 2 2346777787765443
No 394
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=39.75 E-value=93 Score=24.67 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=36.4
Q ss_pred HHHHHHHhhCC--CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcc
Q psy10044 28 RDLFKAAKDRT--PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRF 105 (235)
Q Consensus 28 ~~~F~~A~~~~--P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf 105 (235)
+-.+..|.... |.++++||--+=+ +......+.+++..+. . .+..||.+|..++.+ + ..
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~L--------D~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGL--------HQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hC
Confidence 33455566677 9999999964422 2222333444444432 2 234566677765432 3 45
Q ss_pred cEEEEcCC
Q psy10044 106 DIEVNVPP 113 (235)
Q Consensus 106 ~~~i~i~~ 113 (235)
|+.+.+..
T Consensus 156 d~i~~l~~ 163 (176)
T cd03238 156 DWIIDFGP 163 (176)
T ss_pred CEEEEECC
Confidence 66776643
No 395
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=39.62 E-value=1e+02 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.035 Sum_probs=30.2
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|....|.++++||--+=+ +......+..++..+. .. +..+|.+|+.+..+.
T Consensus 138 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 138 LARLWLSRAPLWILDEPTTAL--------DKAGVALLAGLLRAHL---AR-GGIVLLTTHQDLGLV 191 (198)
T ss_pred HHHHHhcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHHH---hC-CCEEEEEEccccccc
Confidence 344555679999999964422 2223444555555542 12 235666777665443
No 396
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=39.55 E-value=69 Score=22.76 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
.-+..+.++|...|.-.++..|+.+|+..|+...-.
T Consensus 51 ~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~ 86 (91)
T COG2036 51 EYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGR 86 (91)
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhcc
Confidence 445666677778888889999999999999987743
No 397
>KOG4284|consensus
Probab=39.45 E-value=34 Score=33.33 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhCCC---eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 23 GARRVRDLFKAAKDRTP---CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 23 ~~~~i~~~F~~A~~~~P---~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
+..+|..+++.-. +.| -++++||.|.|....+ ....+|-+++.|... +. ++.+++.+|..||.+|
T Consensus 150 tPGRi~qL~el~~-~n~s~vrlfVLDEADkL~~t~s-------fq~~In~ii~slP~~---rQ-v~a~SATYp~nLdn~L 217 (980)
T KOG4284|consen 150 TPGRIAQLVELGA-MNMSHVRLFVLDEADKLMDTES-------FQDDINIIINSLPQI---RQ-VAAFSATYPRNLDNLL 217 (980)
T ss_pred CchHHHHHHHhcC-CCccceeEEEeccHHhhhchhh-------HHHHHHHHHHhcchh---he-eeEEeccCchhHHHHH
Confidence 3455555554432 223 4789999999987443 233566666666543 23 5556777888887766
Q ss_pred h
Q psy10044 100 L 100 (235)
Q Consensus 100 ~ 100 (235)
-
T Consensus 218 s 218 (980)
T KOG4284|consen 218 S 218 (980)
T ss_pred H
Confidence 4
No 398
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=39.36 E-value=54 Score=28.95 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccccccCC---CCCC--ccHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN---SVLH--PYANQTINQLLAEMDGFHQNEGVVVLGATN 90 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~---~~~~--~~~~~~~~~ll~~ld~~~~~~~v~vIatTn 90 (235)
+..+..+-..++...+.+|++|-+-++.+...- .++. ....+.+..++..|.+.-...++.+|.+..
T Consensus 119 eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 119 EQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 344444445566778999999999999864221 1111 112345566666666555556677776644
No 399
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=39.32 E-value=68 Score=25.68 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++.++.. . +..+|.+|+.++.+.
T Consensus 145 laral~~~p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~---~-~~tvi~~sH~~~~~~ 198 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGL--------DPAGRRELLELLKKLKA---E-GKTIIIVTHDLDLLL 198 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHHH
Confidence 344455679999999954322 22334445555555432 2 345666777655443
No 400
>PRK11823 DNA repair protein RadA; Provisional
Probab=39.12 E-value=49 Score=30.51 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEcccccccccc
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR 54 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r 54 (235)
..+.++++..++..|.+|+||.+..+....
T Consensus 143 ~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 143 TNLEAILATIEEEKPDLVVIDSIQTMYSPE 172 (446)
T ss_pred CCHHHHHHHHHhhCCCEEEEechhhhcccc
Confidence 345677777788889999999999987643
No 401
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=38.80 E-value=1.1e+02 Score=24.44 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=30.3
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++.++.. .+..+|.+|++++.+.
T Consensus 137 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~~~ 190 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGL--------DPDGIKELRELILSLRD----QGITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHHhcCCCEEEECCCcccC--------CHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHH
Confidence 444555679999999954422 22234444455555432 2235666777666543
No 402
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.79 E-value=88 Score=26.65 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR 92 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~ 92 (235)
|..+..|-...|.+||+||=-+ +-++.....+..|+..+.. .-...+|.-|...
T Consensus 153 RvaLARAialdPell~~DEPts--------GLDPI~a~~~~~LI~~L~~---~lg~T~i~VTHDl 206 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTS--------GLDPISAGVIDELIRELND---ALGLTVIMVTHDL 206 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCC--------CCCcchHHHHHHHHHHHHH---hhCCEEEEEECCh
Confidence 3456677778899999999432 2244455566777766653 2334555556543
No 403
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=38.75 E-value=70 Score=26.61 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=30.9
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|..++.+.
T Consensus 149 laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~l~---~~-~~tiii~tH~~~~~~ 202 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYL--------DINHQVELMRLMRELN---TQ-GKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEECCHHHHH
Confidence 445556779999999954422 2233444555555543 12 345666777766544
No 404
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=38.56 E-value=1e+02 Score=24.74 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=30.9
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 147 laral~~~p~illlDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~~ 200 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGL--------DVMATRALREFIRQLR---AL-GKCILFSTHIMQEVE 200 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 445556779999999964432 2233445555555543 12 335666777665443
No 405
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=38.17 E-value=3e+02 Score=24.91 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc--------HHhhCCCcccEE
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD--------KALLRPGRFDIE 108 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld--------~al~rpgRf~~~ 108 (235)
..|..+++||+..++.-. .+..++.... ..++.++..+-.+..|. .+++. -+...
T Consensus 269 ~~~~~~~lDE~~~l~~~~-----------~l~~~l~~~R----~~G~~~~~~~Qs~~Ql~~~yg~~~a~~i~~--n~~~~ 331 (410)
T cd01127 269 ERRLWFFIDELPSLHKLP-----------DLVDALAEGR----KFGGCFVLGIQSYAQLEDIYGKKGAQTLAS--NLRTR 331 (410)
T ss_pred CCcEEEEEECccccccch-----------HHHHHHHHHh----cCCCEEEEEEcCHHHHHHHHCHHHHHHHHh--hcCcE
Confidence 347899999999986411 2344554443 35667777777666654 23554 67788
Q ss_pred EEcCCCCHHHHHHHHHHHhcC
Q psy10044 109 VNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 109 i~i~~P~~~~R~~il~~~l~~ 129 (235)
+.++..+.+....+ ...++.
T Consensus 332 i~~~~~d~~ta~~~-s~~lG~ 351 (410)
T cd01127 332 IVLAAPDAKTAEHA-SDSLGE 351 (410)
T ss_pred EEEeCCCHHHHHHH-HHhcCC
Confidence 88888887666655 444544
No 406
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=37.82 E-value=1e+02 Score=19.99 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.6
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q psy10044 135 IDVDTLARGTTGFTGADLENMVNQAALRAAIDGVP 169 (235)
Q Consensus 135 ~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~ 169 (235)
++-++|.+. ||+...-++++++|....+.+|.+
T Consensus 4 v~k~dLi~l--Gf~~~tA~~IIrqAK~~lV~~G~~ 36 (59)
T PF11372_consen 4 VTKKDLIEL--GFSESTARDIIRQAKALLVQKGFS 36 (59)
T ss_pred cCHHHHHHc--CCCHHHHHHHHHHHHHHHHHcCCC
Confidence 456677776 999999999999999999987644
No 407
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=37.54 E-value=20 Score=28.97 Aligned_cols=11 Identities=45% Similarity=0.573 Sum_probs=9.8
Q ss_pred HHHHHHHHHHH
Q psy10044 201 ITAYHEGGHAV 211 (235)
Q Consensus 201 ~~a~~e~gha~ 211 (235)
.+..||.|||+
T Consensus 94 ~~i~HElgHaL 104 (198)
T cd04327 94 RVVLHEFGHAL 104 (198)
T ss_pred HHHHHHHHHHh
Confidence 46899999998
No 408
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=37.36 E-value=77 Score=26.16 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 155 la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tvi~~tH~~~~~ 207 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSAL--------DPELVGEVLNTIRQLA---QE-KRTMVIVTHEMSFA 207 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 344445679999999964432 2223444555555543 12 33556677766544
No 409
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.03 E-value=1.1e+02 Score=23.62 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=30.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+. . ...+|.+|+.++.++
T Consensus 107 la~al~~~p~llllDEP~~gL--------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 159 (171)
T cd03228 107 IARALLRDPPILILDEATSAL--------DPETEALILEALRALA---K--GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCC--------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHHH
Confidence 455566789999999954322 2223344445554443 2 246667788776653
No 410
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.94 E-value=1.2e+02 Score=24.00 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 29 DLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 29 ~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
-.+..|-...|.++++||-.+=+ +......+.+++..+.. . +..+|.+|+.++
T Consensus 117 v~la~al~~~p~vlllDEP~~~L--------D~~~~~~l~~~l~~~~~---~-~~tiiivtH~~~ 169 (192)
T cd03232 117 LTIGVELAAKPSILFLDEPTSGL--------DSQAAYNIVRFLKKLAD---S-GQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCC--------CHHHHHHHHHHHHHHHH---c-CCEEEEEEcCCh
Confidence 33556666789999999965532 22233444445555431 2 235566776654
No 411
>PRK10908 cell division protein FtsE; Provisional
Probab=36.90 E-value=82 Score=25.49 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|....|.++++||--+=+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 148 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 201 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNL--------DDALSEGILRLFEEFN---RV-GVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 444555679999999954322 2223334444555442 22 345666777665444
No 412
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=36.86 E-value=1.1e+02 Score=25.92 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=38.0
Q ss_pred CCeeEEeccchhhhhhccHHHH-HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGAR-RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~-~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
|...+.+..++|++..-..--. ....-+... -....+|+|||+-..-. +.+....+.+++...- ...
T Consensus 133 g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~~-------~~~~~~~~~q~I~~r~----~~~ 200 (254)
T COG1484 133 GISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEPF-------SQEEADLLFQLISRRY----ESR 200 (254)
T ss_pred CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCccC-------CHHHHHHHHHHHHHHH----hhc
Confidence 6677888888887753221111 111111111 12347999999865422 2223333444443322 122
Q ss_pred eEEEEecCCCC
Q psy10044 83 VVVLGATNRRD 93 (235)
Q Consensus 83 v~vIatTn~~~ 93 (235)
.. |.|||.+.
T Consensus 201 ~~-~~tsN~~~ 210 (254)
T COG1484 201 SL-IITSNLSF 210 (254)
T ss_pred cc-eeecCCCh
Confidence 23 78998754
No 413
>PHA00350 putative assembly protein
Probab=36.84 E-value=56 Score=29.74 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=39.6
Q ss_pred CCeEEEEccccccccccCCCCCCc--------------cHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHP--------------YANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPG 103 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~--------------~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpg 103 (235)
..++|+|||+..+++.+..-.... ....-..+++... +..+.=+|..|-.+..||..++.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~H----RH~G~DIiliTQ~~~~Id~~iR~-- 154 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRH----RHYNWDIILLTPNIRKIHSDIRA-- 154 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHh----cccCceEEEEeCCHHHhhHHHHH--
Confidence 358999999999999875411000 0011222333332 23345577789999999999986
Q ss_pred cccE
Q psy10044 104 RFDI 107 (235)
Q Consensus 104 Rf~~ 107 (235)
+.+.
T Consensus 155 lvE~ 158 (399)
T PHA00350 155 MIEM 158 (399)
T ss_pred hhhh
Confidence 6664
No 414
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=36.78 E-value=80 Score=27.17 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=32.6
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.+|++||--+= -+......+..++..+. .. +..||.+|...+.+.
T Consensus 134 ~la~al~~~p~lllLDEPt~g--------LD~~~~~~l~~~l~~~~---~~-g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTG--------LDPRTRRAIWDYIRALK---EE-GVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcC--------CCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHHH
Confidence 345556678999999994332 23334445555555553 12 346777888766554
No 415
>PF13175 AAA_15: AAA ATPase domain
Probab=36.77 E-value=83 Score=27.81 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=28.0
Q ss_pred EEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc
Q psy10044 41 VVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD 94 (235)
Q Consensus 41 Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ 94 (235)
|++|||-++-+ |+.+.+.+-.+|..+- .+.++=||.||..|.-
T Consensus 372 illidEPE~~L--------Hp~~q~~~~~~L~~~~---~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 372 ILLIDEPELHL--------HPQAQRKFIDFLKKLS---KNNNIQIIITTHSPFI 414 (415)
T ss_pred EEEEeCccccC--------CHHHHHHHHHHHHHHh---ccCCCEEEEECCChhh
Confidence 99999988865 3334444444444433 3456688889998753
No 416
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.72 E-value=1.4e+02 Score=25.08 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy10044 26 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN 90 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn 90 (235)
.=|-+...|-+..|.||++||-=+-+ ++.+..-+.+++.++. +.--+||.|-|
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSAL--------DPIsT~kIEeLi~eLk----~~yTIviVTHn 207 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSAL--------DPISTLKIEELITELK----KKYTIVIVTHN 207 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCccccc--------CchhHHHHHHHHHHHH----hccEEEEEeCC
Confidence 33556667778889999999953322 3334455677777776 22335665655
No 417
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.59 E-value=47 Score=26.68 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=30.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|....|.++++||--+-+ +......+..++.++. .+.+..+|.+|..++.+.
T Consensus 139 ia~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAAL--------DPALRAEMLDLVLDLH---AETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 334445679999999964432 2223334444444432 222345666777666544
No 418
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=36.41 E-value=1e+02 Score=20.82 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
..-.-+..+.+.+...+--.++..++..|+..|++.+
T Consensus 35 i~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~ 71 (77)
T smart00576 35 ILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENL 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3445577888888888777788889999999999876
No 419
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.36 E-value=1.2e+02 Score=26.77 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=26.4
Q ss_pred CCeeEEeccchhhhhhccHH---HHHHHHHHHHHhhCCCeEEEEccccccc
Q psy10044 4 HPDTNHAQGPEFDEVLVGQG---ARRVRDLFKAAKDRTPCVVFIDEIDSVG 51 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~---~~~i~~~F~~A~~~~P~Il~iDeiD~l~ 51 (235)
|...++++.++|........ .......++... ...+|+|||+....
T Consensus 211 g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 211 GKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 56677888888877543210 011122233333 35799999997753
No 420
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=36.32 E-value=84 Score=25.64 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+.. .+..+|.+|.+++.+.
T Consensus 154 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~~~ 207 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGL--------NPEETEELAELIRELRE----RGITVLLVEHDMDVVM 207 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHH
Confidence 444555679999999964422 22334445555555432 2235666777665543
No 421
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=36.14 E-value=3.7e+02 Score=25.44 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC-CeEEEEe-c------CCC--------CcccHHhhC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE-GVVVLGA-T------NRR--------DDLDKALLR 101 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~-~v~vIat-T------n~~--------~~ld~al~r 101 (235)
.+.||+|||+-.++.... ...-..|...+.. ... ++++|.| + |.. ..+++.++.
T Consensus 132 ~~kvILVEDlPN~~~~~~--------~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~ 201 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHRDT--------SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILN 201 (519)
T ss_pred CceEEEeeccccccchhH--------HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHh
Confidence 468999999987665321 2222223333332 223 7777777 1 111 146788876
Q ss_pred CCcccEEEEcCCCCHHHHHHHHHHHhcCc--------cCC-CCC-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy10044 102 PGRFDIEVNVPPPDYTGRREILDLYLGKI--------VSK-NID-VDTLARGTTGFTGADLENMVNQAALRAA 164 (235)
Q Consensus 102 pgRf~~~i~i~~P~~~~R~~il~~~l~~~--------~~~-~~~-l~~la~~t~G~s~~di~~l~~~A~~~a~ 164 (235)
..++ .+|.|.+=...--+.-|+..+... ... ..+ ++.|+.. |.+||+..++.=-+.+.
T Consensus 202 ~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 202 HPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred CCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 4455 478887755544444444443211 111 122 5666663 56899999886555554
No 422
>PRK04296 thymidine kinase; Provisional
Probab=36.11 E-value=1.5e+02 Score=23.59 Aligned_cols=58 Identities=21% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC------CCcccHHhhCCCcccEEEE
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR------RDDLDKALLRPGRFDIEVN 110 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~------~~~ld~al~rpgRf~~~i~ 110 (235)
..+.+|+|||+..|-. ..+.+++..+.. .++-||.+... +..-.+.|.. ..|..++
T Consensus 77 ~~~dvviIDEaq~l~~------------~~v~~l~~~l~~----~g~~vi~tgl~~~~~~~~f~~~~~L~~--~aD~V~~ 138 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK------------EQVVQLAEVLDD----LGIPVICYGLDTDFRGEPFEGSPYLLA--LADKVTE 138 (190)
T ss_pred CCCCEEEEEccccCCH------------HHHHHHHHHHHH----cCCeEEEEecCcccccCcCchHHHHHH--hcCeEEE
Confidence 4568999999955411 123345555442 23344444322 2334556666 6777776
Q ss_pred cC
Q psy10044 111 VP 112 (235)
Q Consensus 111 i~ 112 (235)
+.
T Consensus 139 l~ 140 (190)
T PRK04296 139 LK 140 (190)
T ss_pred ee
Confidence 64
No 423
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=35.80 E-value=28 Score=29.98 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCccceEEE
Q psy10044 201 ITAYHEGGHAVVAFFTKDSENHLTHPITLN 230 (235)
Q Consensus 201 ~~a~~e~gha~~~~~~~~~~~~~~~~~~~~ 230 (235)
.+..||.||++++.... . .++.+.+.
T Consensus 137 svvvHElgHal~A~~~g--i--~V~~iGl~ 162 (277)
T cd06162 137 SGVVHEMGHGVAAVREQ--V--RVNGFGIF 162 (277)
T ss_pred HHHHHHHHHHHHHHHcC--C--eeceEEEe
Confidence 45789999999998753 2 55555543
No 424
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.46 E-value=80 Score=26.61 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=30.5
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|....|.++++||--+=+ +......+..++..+.. . +..+|.+|..++.+.
T Consensus 147 laraL~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~---~-g~tii~vtH~~~~~~ 200 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGL--------DPAGRTQMIAIIRRIVA---Q-GNHVIISSHDIDLIY 200 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 445556779999999964422 22334445555555431 2 235666777665543
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=35.46 E-value=1.5e+02 Score=23.72 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
.+.+..+...+ ..|.++++||.-+=.. ......+...++..+.. .+..+|.+|.+.+.+..
T Consensus 96 ~~~l~~i~~~~--~~~~llllDEp~~gld-------~~~~~~l~~~ll~~l~~----~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 96 LLELKEILSLA--TPRSLVLIDELGRGTS-------TAEGLAIAYAVLEHLLE----KGCRTLFATHFHELADL 156 (202)
T ss_pred HHHHHHHHHhc--cCCeEEEEecCCCCCC-------HHHHHHHHHHHHHHHHh----cCCeEEEECChHHHHHH
Confidence 34455554433 4699999999754221 11122333445554432 13356667776655443
No 426
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=35.41 E-value=61 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
|..+-...++.+|...|--.++..|+.+|+.-|++..
T Consensus 41 fayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r 77 (129)
T PF02291_consen 41 FAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 7788888999999999888899999999999999854
No 427
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=35.28 E-value=86 Score=25.76 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=30.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 148 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~ 201 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGV--------DPISVIDIKRIIEHLR---DS-GLGVLITDHNVRETL 201 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---hc-CCEEEEEEcCHHHHH
Confidence 445556779999999954422 2223444445555543 12 235666777665443
No 428
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=35.26 E-value=83 Score=25.76 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=30.8
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.++++||--+-+ +......+..++..+. . .+..||.+|..++.+.
T Consensus 154 ~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~-~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGL--------DIDALKIVAEGINRLR---E-PDRSFLIITHYQRLLN 208 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccC--------CHHHHHHHHHHHHHHH---H-CCcEEEEEEecHHHHH
Confidence 3455556679999999954322 2233444555555543 1 2335666777666543
No 429
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=35.20 E-value=87 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEEcccccc
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSV 50 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l 50 (235)
...+..+.+.+....|.+|+||.+-.+
T Consensus 97 ~~~~~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 97 VPEFERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred cHHHHHHHHHHHhcCCCEEEECChHHh
Confidence 455666777777778999999988777
No 430
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=35.09 E-value=92 Score=25.55 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||-.+=+ +......+..++..+. .. +..+|.+|.+.+.++
T Consensus 147 la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 200 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSAL--------DPELRHEVLKVMQDLA---EE-GMTMVIVTHEIGFAE 200 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 444555679999999965532 2223444455555543 12 235666777665543
No 431
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=34.95 E-value=1.6e+02 Score=23.56 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=38.2
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC-CCcccEE
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR-PGRFDIE 108 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r-pgRf~~~ 108 (235)
..+.|.+.+ .+|+||||-.+--+ + +.|...++..-.+.+. +|+|-.+-+. +|-+.+ +-+++..
T Consensus 93 al~rA~~~a-DvIIIDEIGpMElk---------s----~~f~~~ve~vl~~~kp-liatlHrrsr-~P~v~~ik~~~~v~ 156 (179)
T COG1618 93 ALRRALEEA-DVIIIDEIGPMELK---------S----KKFREAVEEVLKSGKP-LIATLHRRSR-HPLVQRIKKLGGVY 156 (179)
T ss_pred HHHHHhhcC-CEEEEecccchhhc---------c----HHHHHHHHHHhcCCCc-EEEEEecccC-ChHHHHhhhcCCEE
Confidence 344444443 79999999765321 1 2233333322112222 6666554332 444432 1155544
Q ss_pred EEcCCCCHHHHHHHHHHHhcC
Q psy10044 109 VNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 109 i~i~~P~~~~R~~il~~~l~~ 129 (235)
+.+ +.+-|-.|+...++.
T Consensus 157 v~l---t~~NR~~i~~~Il~~ 174 (179)
T COG1618 157 VFL---TPENRNRILNEILSV 174 (179)
T ss_pred EEE---ccchhhHHHHHHHHH
Confidence 444 334444677666543
No 432
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=34.80 E-value=49 Score=34.00 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
+.++|+|||+|++ +.+....+..++..+..+ ..+|++ .++.-|..+-.+|
T Consensus 593 a~svlVlDEVHaY---------D~~~~~~L~rlL~w~~~l--G~~VlL-mSATLP~~l~~~L 642 (1110)
T TIGR02562 593 MSSDLILDEPDDY---------EPEDLPALLRLVQLAGLL--GSRVLL-SSATLPPALVKTL 642 (1110)
T ss_pred cCCCEEEECCccC---------CHHHHHHHHHHHHHHHHc--CCCEEE-EeCCCCHHHHHHH
Confidence 4589999999998 334455666666655543 234544 4555444433333
No 433
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=34.74 E-value=1.4e+02 Score=25.37 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC-CCCeEEEEecCCCCcccHHhhC
Q psy10044 29 DLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ-NEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 29 ~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vIatTn~~~~ld~al~r 101 (235)
-+|..|--..|-++++||-=.- -+-..+ ..|++.++.+.. .+.--+|.-|.++++++|-+-.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~G--------LDl~~r---e~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQG--------LDLIAR---EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHhcCCCEEEecCcccc--------CChHHH---HHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 4566777788999999994221 111112 223333333311 1222344568888888876554
No 434
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=34.58 E-value=2.4e+02 Score=22.49 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~ 91 (235)
+++..++..+ ..|.++++||.-+-.. ......+...++..+.. .+..+|.+|..
T Consensus 97 ~~~~~i~~~~--~~p~llllDEp~~glD-------~~~~~~i~~~~l~~l~~----~~~~vi~~tH~ 150 (200)
T cd03280 97 KNIARILQHA--DPDSLVLLDELGSGTD-------PVEGAALAIAILEELLE----RGALVIATTHY 150 (200)
T ss_pred HHHHHHHHhC--CCCcEEEEcCCCCCCC-------HHHHHHHHHHHHHHHHh----cCCEEEEECCH
Confidence 3344444333 5689999999755322 11122233445555432 13356667775
No 435
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=34.47 E-value=69 Score=21.15 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
.-+..+...|...|...++..|+.+|+..|+.
T Consensus 42 ~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r 73 (75)
T PF00125_consen 42 YLLVEILEEAGNLARHAKRKTITPRDIQLAVR 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHhhcCCcEecHHHHHHHHh
Confidence 44566777788888888888999999998875
No 436
>PRK07914 hypothetical protein; Reviewed
Probab=34.34 E-value=3.1e+02 Score=23.75 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCC--cccHHhhCCCcccEEEEcCCC-CHHHHHHHHHHHhcCcc--CCCCCHHHHH
Q psy10044 67 INQLLAEMDGFHQNEGVVVLGATNRRD--DLDKALLRPGRFDIEVNVPPP-DYTGRREILDLYLGKIV--SKNIDVDTLA 141 (235)
Q Consensus 67 ~~~ll~~ld~~~~~~~v~vIatTn~~~--~ld~al~rpgRf~~~i~i~~P-~~~~R~~il~~~l~~~~--~~~~~l~~la 141 (235)
...+...+++... ..++|+.+++... .+=.++..-|- ..+++.+| +..+....++..+++.. .+..-...|+
T Consensus 81 ~~~l~~~l~~~~~-~t~lil~~~~~~~~kk~~K~L~k~g~--~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~ 157 (320)
T PRK07914 81 AALILSAAADLPP-GTVLVVVHSGGGRAKALANQLRKLGA--EVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALL 157 (320)
T ss_pred HHHHHHHHhCCCC-CeEEEEEecCCcchhHHHHHHHHCCC--EEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455555555433 3455554433211 11123433221 36788888 89999888888887652 1222244455
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 142 RGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 142 ~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
.. +|.|+..+.++--..+.-.+ ..||.+++++.+.
T Consensus 158 ~~----~g~dl~~l~~EleKL~~~~~-~~It~e~V~~~v~ 192 (320)
T PRK07914 158 DA----VGSDLRELASACSQLVADTG-GAVDAAAVRRYHS 192 (320)
T ss_pred HH----HCccHHHHHHHHHHHhcCCC-CCcCHHHHHHHcC
Confidence 53 33456555555433332223 4588888877653
No 437
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.19 E-value=1.2e+02 Score=24.82 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.|+++||--+=+ +......+..++.++. .. +..+|.+|..++.+.
T Consensus 148 la~al~~~p~illlDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 201 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGL--------APIIIQQIFDTIEQLR---EQ-GMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHHhCCCEEEEcCccccC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCcHHHHH
Confidence 344445679999999954422 2233444445555443 22 234555677655443
No 438
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=34.15 E-value=93 Score=25.33 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
..|-...|.++++||--+-+ +......+..++..+. .+ +..+|.+|++.+.+
T Consensus 125 aral~~~p~llilDEP~~~L--------D~~~~~~l~~~l~~~~---~~-~~tvii~sH~~~~~ 176 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGL--------DMPTQELLTELFIELA---GA-GTAILMTTHDLAQA 176 (223)
T ss_pred HHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 34445679999999954432 2233444555555543 12 34566677765543
No 439
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=34.07 E-value=1.3e+02 Score=24.66 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=30.9
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.|+++||--+-+ +......+..++..+.. . +..+|.+|+.++.+.
T Consensus 155 ~laral~~~p~illLDEPt~~L--------D~~~~~~l~~~l~~l~~---~-~~tiii~sH~~~~~~ 209 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGL--------DIDALKIVADGVNSLRD---G-KRSFIIVTHYQRILD 209 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHHHHH
Confidence 3455566779999999964422 22233444445555432 1 335666777655443
No 440
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=33.92 E-value=1.5e+02 Score=22.99 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=31.3
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+-.+..|....|.++++||--+-+ +......+..++..+. .. +..+|.+|+..+.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 159 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHL--------DVEGERALNQAIAALK---AA-GATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCcccc--------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 334556666789999999954322 2233444455555543 22 33566677665433
No 441
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.46 E-value=2.4e+02 Score=23.82 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=23.9
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
.|.++++||-.+=+ +......+..++..+. . ...+|.+|+++.
T Consensus 192 ~p~vlllDEp~~~L--------d~~~~~~l~~~l~~~~---~--~~tii~isH~~~ 234 (276)
T cd03241 192 AVPTLIFDEIDTGI--------SGEVAQAVGKKLKELS---R--SHQVLCITHLPQ 234 (276)
T ss_pred CCCEEEEECCccCC--------CHHHHHHHHHHHHHHh---C--CCEEEEEechHH
Confidence 89999999965432 2222333333444432 2 235667777655
No 442
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=33.43 E-value=1e+02 Score=25.66 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=31.1
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++.++.. + +..+|.+|+.++.+.
T Consensus 148 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHL--------DVRAQLETLALVRELAA---T-GVTVVAALHDLNLAA 201 (256)
T ss_pred HHHHHhcCCCEEEEcCccccC--------CHHHHHHHHHHHHHHHh---c-CCEEEEEeCCHHHHH
Confidence 444555679999999964422 22334455555555531 2 235666777766553
No 443
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=33.42 E-value=58 Score=26.23 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=27.4
Q ss_pred HHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 33 AAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 33 ~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.|-...|.++++||-.+-+ +......+..++..+. ...+..+|.+|...+.+
T Consensus 141 ral~~~p~llllDEPt~~L--------D~~~~~~~~~~l~~~~---~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSAL--------DPLLREEMLALVKQLC---SERQRTLLMVTHHLSDA 192 (213)
T ss_pred HHHhcCCCEEEEcCCCccC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 3344679999999965533 2223333444444432 22234556677665543
No 444
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=33.38 E-value=2.6e+02 Score=22.65 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=42.7
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCcccHHhhCCCcc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR-RDDLDKALLRPGRF 105 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~-~~~ld~al~rpgRf 105 (235)
-.++++......|.++++|=.|--.+..+ -- +++.++......-+|+++ |+.. +..+-.++.+.|-.
T Consensus 26 ~~~~l~~~~~~~pd~vl~dl~d~~mp~~~-------Gl----~~~~~l~~~~p~~~iIvl-t~~~~~~~~~~~~~~~Ga~ 93 (207)
T PRK11475 26 QSSFQDAMSRISFSAVIFSLSAMRSERRE-------GL----SCLTELAIKFPRMRRLVI-ADDDIEARLIGSLSPSPLD 93 (207)
T ss_pred HHHHHHHhccCCCCEEEeeccccCCCCCC-------HH----HHHHHHHHHCCCCCEEEE-eCCCCHHHHHHHHHHcCCe
Confidence 34555566666788998765554433211 11 233333322334455655 4432 33344555555655
Q ss_pred cEEEEcCCC-CHHHHHHHHHHHhcC
Q psy10044 106 DIEVNVPPP-DYTGRREILDLYLGK 129 (235)
Q Consensus 106 ~~~i~i~~P-~~~~R~~il~~~l~~ 129 (235)
+. +..| +.++-.+-++..+.+
T Consensus 94 gy---l~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 94 GV---LSKASTLEILQQELFLSLNG 115 (207)
T ss_pred EE---EecCCCHHHHHHHHHHHHCC
Confidence 53 3333 444555555555544
No 445
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.38 E-value=1.8e+02 Score=23.63 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=30.1
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+-+ +......+..++..+. . ...+|.+|+.++.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~L--------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 200 (234)
T cd03251 148 AIARALLKDPPILILDEATSAL--------DTESERLVQAALERLM---K--NRTTFVIAHRLSTI 200 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccC--------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 3445556779999999964422 2223444455555443 2 23566677766655
No 446
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.37 E-value=1.7e+02 Score=23.42 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=29.5
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+-+ +......+..++.++.. .....++|.+++..+.+
T Consensus 128 ~laral~~~p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~--~~~~t~ii~~~h~~~~~ 183 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGL--------DSSTALEILKCIRTMAD--VLKTTTFVSLYQASDEI 183 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccC--------CHHHHHHHHHHHHHHHH--hCCCEEEEEEcCCHHHH
Confidence 3455566779999999953322 22334444455554431 11234555566554433
No 447
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=33.33 E-value=98 Score=25.46 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=30.7
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|....|.++++||--+=+ +......+..++.++. .+.+..+|.+|..++.+
T Consensus 164 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~ 217 (236)
T cd03267 164 IAAALLHEPEILFLDEPTIGL--------DVVAQENIRNFLKEYN---RERGTTVLLTSHYMKDI 217 (236)
T ss_pred HHHHHhcCCCEEEEcCCCCCC--------CHHHHHHHHHHHHHHH---hcCCCEEEEEecCHHHH
Confidence 445556679999999954422 2233444555555442 22234666777776544
No 448
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=32.98 E-value=1.4e+02 Score=25.13 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+. .. +..||.+|..++.+.
T Consensus 153 laraL~~~p~llllDEPt~~L--------D~~~~~~l~~~L~~~~---~~-g~tviivsH~~~~~~ 206 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGV--------DVKTEARIISLLRELR---DE-GKTMLVSTHNLGSVT 206 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 334445679999999954422 2233445555555543 12 335666777765543
No 449
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=32.97 E-value=30 Score=31.06 Aligned_cols=16 Identities=50% Similarity=0.588 Sum_probs=13.8
Q ss_pred CCCeEEEEcccccccc
Q psy10044 37 RTPCVVFIDEIDSVGA 52 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~ 52 (235)
..|.|++|||+|-+..
T Consensus 294 ~tpgivLiDeIdlflh 309 (440)
T COG3950 294 LTPGIVLIDEIDLFLH 309 (440)
T ss_pred CCCceEEeehhhhhcC
Confidence 4589999999999875
No 450
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=32.87 E-value=30 Score=26.75 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=10.5
Q ss_pred CCCeEEEEccccccc
Q psy10044 37 RTPCVVFIDEIDSVG 51 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~ 51 (235)
..|.+|+|||+|.+.
T Consensus 149 ~~~~vlviDd~d~~~ 163 (185)
T PF13191_consen 149 RKPLVLVIDDLDWAD 163 (185)
T ss_dssp ---EEEEEETTTHHH
T ss_pred CCeEEEEEeCCCCCC
Confidence 347999999999653
No 451
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.86 E-value=1.2e+02 Score=25.62 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=31.1
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+=+ +......+..++..+. .. +..||.+|..++.+
T Consensus 155 ~la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~---~~-~~tiiivsH~~~~~ 208 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGL--------DPKGRKELMTLFKKLH---QS-GMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeccHHHH
Confidence 3455566779999999964422 2233445555555543 22 34566677765544
No 452
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=32.74 E-value=1e+02 Score=24.87 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
..|-...|.++++||--+=+ +......+..++.++.. .+..+|.+|..++.+
T Consensus 144 aral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~ 195 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGL--------APKIVEEIFEAIRELRD----EGVTILLVEQNARFA 195 (222)
T ss_pred HHHHhcCCCEEEECCCcccC--------CHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHH
Confidence 34445679999999964322 22334445555555432 233566677765543
No 453
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.55 E-value=1.9e+02 Score=28.87 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCC-
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPG- 103 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpg- 103 (235)
+++..++..+ ..|+++++||.-+=. +......+...++..+.. .+..+|.||...+.-.-+...+|
T Consensus 391 ~~~~~il~~~--~~~sLvLlDE~g~Gt-------D~~eg~ala~aiLe~l~~----~g~~viitTH~~eL~~~~~~~~~v 457 (771)
T TIGR01069 391 KNISAILSKT--TENSLVLFDELGAGT-------DPDEGSALAISILEYLLK----QNAQVLITTHYKELKALMYNNEGV 457 (771)
T ss_pred HHHHHHHHhc--CCCcEEEecCCCCCC-------CHHHHHHHHHHHHHHHHh----cCCEEEEECChHHHHHHhcCCCCe
Confidence 3455555544 468999999964321 111222333455555542 23467778887543222222232
Q ss_pred ------------cccEEEEcCCCCHHHHHHHHHHH
Q psy10044 104 ------------RFDIEVNVPPPDYTGRREILDLY 126 (235)
Q Consensus 104 ------------Rf~~~i~i~~P~~~~R~~il~~~ 126 (235)
.|.+.+..+.|...--..|.+.+
T Consensus 458 ~~~~~~~d~~~l~p~Ykl~~G~~g~S~a~~iA~~~ 492 (771)
T TIGR01069 458 ENASVLFDEETLSPTYKLLKGIPGESYAFEIAQRY 492 (771)
T ss_pred EEeEEEEcCCCCceEEEECCCCCCCcHHHHHHHHh
Confidence 23466666777655555555443
No 454
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=32.49 E-value=1e+02 Score=26.53 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++.++. . .+..+|.+|..++.+.
T Consensus 146 la~al~~~p~lllLDEPt~gL--------D~~~~~~l~~~l~~~~---~-~g~til~~sH~~~~~~ 199 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGL--------DPHARHLIWERLRSLL---A-RGKTILLTTHFMEEAE 199 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHHH
Confidence 445556779999999953321 2333444555555543 1 2346777887766544
No 455
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.45 E-value=97 Score=26.42 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=30.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.+|++||--+=+ +......+..++..+. .. +..||.+|.+.+.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gL--------D~~~~~~l~~~l~~l~---~~-g~tvlivsH~~~~~ 208 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGL--------DPEGRKEMMQLFKDYQ---KA-GHTVILVTHNMDDV 208 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCC--------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 3455556779999999953321 2233444555555543 22 34556677665543
No 456
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=32.29 E-value=60 Score=21.14 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHhhCC
Q psy10044 169 PHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 169 ~~i~~~~~~~al~~~~~~ 186 (235)
+.|+.+||+.|+.++.++
T Consensus 28 p~it~~DF~~Al~~~kpS 45 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPS 45 (62)
T ss_dssp HHBCHHHHHHHHHTCGGS
T ss_pred CCCCHHHHHHHHHHcCCC
Confidence 359999999999999665
No 457
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=32.27 E-value=2e+02 Score=23.22 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=25.4
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.|.++++||.-+-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 151 ~~~~lllDEp~~~l--------D~~~~~~~~~~l~~~~---~~-~~tii~itH~~~~~ 196 (213)
T cd03279 151 RLEALFIDEGFGTL--------DPEALEAVATALELIR---TE-NRMVGVISHVEELK 196 (213)
T ss_pred CCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---hC-CCEEEEEECchHHH
Confidence 57899999976432 2222333444444443 22 34666777765544
No 458
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=32.26 E-value=67 Score=25.89 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+-+ +......+..++..+. .+.+..+|.+|..++.+
T Consensus 151 la~al~~~p~lllLDEP~~~L--------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 151 IARALANDPKIILADEPTGNL--------DSETGKEVMELLRELN---KEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHccCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---HhcCCeEEEEECCHHHH
Confidence 444555679999999954322 2233445555555543 11234677777766543
No 459
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=32.15 E-value=88 Score=25.90 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..+|..+. ...+..+|.+|+..+.+.
T Consensus 164 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~L~~~~---~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGL--------NPKETKELDELIAELR---NEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCC--------CHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHHHHH
Confidence 344555779999999954422 2233444455555443 222457777888766554
No 460
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=32.13 E-value=1.6e+02 Score=23.95 Aligned_cols=73 Identities=23% Similarity=0.385 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCC
Q psy10044 23 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRP 102 (235)
Q Consensus 23 ~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rp 102 (235)
+|+..-.+.... ...|.|+++||+-+-+. ...++-++.++-.+-. ..+|-++..|..++. + +|
T Consensus 137 GE~QriAliR~L-q~~P~ILLLDE~TsALD--------~~nkr~ie~mi~~~v~---~q~vAv~WiTHd~dq---a-~r- 199 (223)
T COG4619 137 GEKQRIALIRNL-QFMPKILLLDEITSALD--------ESNKRNIEEMIHRYVR---EQNVAVLWITHDKDQ---A-IR- 199 (223)
T ss_pred hHHHHHHHHHHh-hcCCceEEecCchhhcC--------hhhHHHHHHHHHHHhh---hhceEEEEEecChHH---H-hh-
Confidence 345444444444 45699999999866442 1234445555544332 456788888876553 2 33
Q ss_pred CcccEEEEcCC
Q psy10044 103 GRFDIEVNVPP 113 (235)
Q Consensus 103 gRf~~~i~i~~ 113 (235)
-+++.|.+-+
T Consensus 200 -ha~k~itl~~ 209 (223)
T COG4619 200 -HADKVITLQP 209 (223)
T ss_pred -hhheEEEecc
Confidence 4666676644
No 461
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=32.11 E-value=1.1e+02 Score=25.02 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=31.2
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.++++||--+=+ +......+..++..+. .+.+..+|.+|..++.+.
T Consensus 142 ~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGL--------DPASRAAIVAHVRALC---RDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCC--------CHHHHHHHHHHHHHHH---HhCCCEEEEEecChhhHh
Confidence 3455556779999999964422 2223334444444442 112335666777776653
No 462
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=32.08 E-value=63 Score=32.16 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=36.5
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCC---CCC--ccHHHHHHHHHHHhcCCCCCCCeEEEEe
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS---VLH--PYANQTINQLLAEMDGFHQNEGVVVLGA 88 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~---~~~--~~~~~~~~~ll~~ld~~~~~~~v~vIat 88 (235)
+..+-...+...|.+|+||-+-+++.+..-. ++. ....+.++.+|..|..+-...++.+|.|
T Consensus 127 l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 127 LEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred HHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3333344556679999999999999632211 111 1223445666666666655566677655
No 463
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.98 E-value=1.1e+02 Score=25.94 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEccccccc
Q psy10044 23 GARRVRDLFKAAKDRTPCVVFIDEIDSVG 51 (235)
Q Consensus 23 ~~~~i~~~F~~A~~~~P~Il~iDeiD~l~ 51 (235)
+--..|-.|..|....|.|+++||+=+.+
T Consensus 150 SGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 150 SGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 34567888999999999999999986654
No 464
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=31.90 E-value=1.7e+02 Score=25.80 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 115 DYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
+..+++++++.+-......+.|..+|++...|-|-++|..+++.-..
T Consensus 25 s~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~ 71 (344)
T PF11035_consen 25 SAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKG 71 (344)
T ss_pred cHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHH
Confidence 56688888887765445678899999999999999999999986443
No 465
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=31.87 E-value=55 Score=24.74 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=20.5
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 76 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~ 76 (235)
..+|++||+|.+... .....+..++..+..
T Consensus 120 ~~~iViDE~h~l~~~--------~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDE--------TFRAMLKSILRRLKR 149 (169)
T ss_dssp ESEEEEETHHHHHHT--------THHHHHHHHHHHSHT
T ss_pred ceeeccCcccccccc--------cHHHHHHHHHHHhcC
Confidence 689999999999763 123356666666654
No 466
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=31.81 E-value=3.5e+02 Score=23.56 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=40.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 106 DIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 106 ~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
...+++..|+..+-...++..+.+.. .+...+..|+. .+|.|+..+.++--..+.-.+ .||.++++..+
T Consensus 127 ~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~----~~g~dl~~l~~ELeKL~ly~~--~It~edV~~~v 197 (328)
T PRK08487 127 AVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYF----IHNEDLALAANELEKLAILNE--PITLKDIQELV 197 (328)
T ss_pred ceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----HhCcHHHHHHHHHHHHHHhcC--CCCHHHHHHHh
Confidence 34688888998888888888876642 12222444444 344566666555433333222 47777777654
No 467
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=31.71 E-value=1.1e+02 Score=27.11 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=32.9
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
+..|-...|.++++||--+= -+......+..++.++.. .+..||.+|...+.+..
T Consensus 183 lA~aL~~~P~lLiLDEPt~g--------LD~~~r~~l~~~l~~l~~----~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 183 LARALINDPQLLILDEPTTG--------LDPHARHLIWERLRSLLA----RGKTILLTTHFMEEAER 237 (340)
T ss_pred HHHHHhcCCCEEEEECCCCC--------CCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHH
Confidence 34455577999999995332 233344555555555532 23467778887766553
No 468
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=31.69 E-value=1.2e+02 Score=25.13 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=30.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.|+++||--+=+ +......+..++.++. .+ +..+|.+|+.++.+
T Consensus 161 ~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~-g~tii~~tH~~~~~ 214 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGL--------DIDALKIIAEGINKLM---TS-ENSIILITHYQRLL 214 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCHHHH
Confidence 3445556779999999953321 2223344445554443 11 33566677766644
No 469
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=31.68 E-value=1.5e+02 Score=26.57 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=46.8
Q ss_pred hhhhhccHHHHHHHHH--HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy10044 15 FDEVLVGQGARRVRDL--FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR 92 (235)
Q Consensus 15 l~~~~~g~~~~~i~~~--F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~ 92 (235)
+..+|..+-..-+++- +..|-...|.|+++||.=+-+.. =-...+-.+||..-..+.+ .++ ..|
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDP-------LIR~~mQdeLl~Lq~~l~K--TIv--Fit--- 222 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDP-------LIRTEMQDELLELQAKLKK--TIV--FIT--- 222 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcCh-------HHHHHHHHHHHHHHHHhCC--eEE--EEe---
Confidence 3344444433333333 33455577999999996443211 0112244445544443322 233 334
Q ss_pred CcccHHhhCCCcc-----cEEEEcCCCC
Q psy10044 93 DDLDKALLRPGRF-----DIEVNVPPPD 115 (235)
Q Consensus 93 ~~ld~al~rpgRf-----~~~i~i~~P~ 115 (235)
.+||+|++-..|+ .+.+.++.|.
T Consensus 223 HDLdEAlriG~rIaimkdG~ivQ~Gtp~ 250 (386)
T COG4175 223 HDLDEALRIGDRIAIMKDGEIVQVGTPE 250 (386)
T ss_pred cCHHHHHhccceEEEecCCeEEEeCCHH
Confidence 5899999866665 3678888875
No 470
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.66 E-value=61 Score=27.75 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.+|++||--+-+ +......+..++..+ ....+..||.+|...+.+.
T Consensus 155 ~lAraL~~~P~llllDEPt~~L--------D~~~~~~l~~~L~~l---~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGL--------DPKGRKEMMEMFYKL---HKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccC--------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3455566789999999965432 222233333334333 2233446777777665443
No 471
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=31.61 E-value=1.2e+02 Score=24.00 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=34.6
Q ss_pred EEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhc
Q psy10044 84 VVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARG 143 (235)
Q Consensus 84 ~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~ 143 (235)
+||.+|..++-+++..+++|++ .|.+..|-.-+ ..+.....++|.+..-++
T Consensus 90 iVIsat~~~~ii~~~~~~~~~v--iIDla~prdvd-------~~~~~~~G~~d~~~~~~~ 140 (168)
T cd01080 90 IVIVAVGKPGLVKGDMVKPGAV--VIDVGINRVPD-------KSGGKLVGDVDFESAKEK 140 (168)
T ss_pred EEEEcCCCCceecHHHccCCeE--EEEccCCCccc-------ccCCCeeCCcCHHHHHhh
Confidence 8888998888899999887765 77888774323 112224567776665544
No 472
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=31.46 E-value=69 Score=26.90 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=31.6
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.++++||-.+-+ +......+..++..+. ...+..+|.+|+.++.+.
T Consensus 153 ~laral~~~p~llllDEPt~gL--------D~~~~~~l~~~L~~l~---~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWL--------DISHQIDLLELLSELN---REKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 3445556779999999965432 2223334444454442 222346677777766543
No 473
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=31.38 E-value=71 Score=26.63 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.|+++||--+-+ +......+..++..+. ...+..+|.+|.+.+.+.
T Consensus 162 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGL--------DVSVQARLLDLLRGLV---RELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHH
Confidence 445555779999999965432 2223334444444432 222456777887766654
No 474
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=31.37 E-value=2e+02 Score=22.72 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=29.4
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
+..|-...|.++++||--+-+ +......+.+++..+.. . +..+|.+|.+++
T Consensus 145 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~ 195 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSL--------DPKNRDEVLDLLLELND---E-GKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCC--------CHHHHHHHHHHHHHHHh---c-CCEEEEEeCCHH
Confidence 445556789999999965532 22334445555555431 2 335556777654
No 475
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=31.32 E-value=1.2e+02 Score=24.60 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+-+ +......+..++..+. .+ ..+|.+|.+++.+
T Consensus 152 la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~--~tii~~sH~~~~~ 203 (227)
T cd03260 152 LARALANEPEVLLLDEPTSAL--------DPISTAKIEELIAELK---KE--YTIVIVTHNMQQA 203 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHh---hC--cEEEEEeccHHHH
Confidence 344455679999999964422 2233444555555543 22 4566777766544
No 476
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=31.09 E-value=91 Score=25.12 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=11.5
Q ss_pred hhCCCeEEEEcccccccc
Q psy10044 35 KDRTPCVVFIDEIDSVGA 52 (235)
Q Consensus 35 ~~~~P~Il~iDeiD~l~~ 52 (235)
+.....+++|||+|+-+.
T Consensus 155 ~~~~~p~~ilDEvd~~LD 172 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALD 172 (220)
T ss_dssp TCS--SEEEEESTTTTS-
T ss_pred cccccccccccccccccc
Confidence 333456899999998653
No 477
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.95 E-value=65 Score=26.38 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=29.5
Q ss_pred HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
..|-...|.++++||--+-+ +......+..++..+. .+.+..+|.+|.+++.+.
T Consensus 156 a~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 156 ARALMQQPKLILADEPVASL--------DPASSRQVMDLLKRIN---REEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHhcCCCEEEEeCccccC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 34445679999999954422 2223344444454442 122345666777766544
No 478
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.84 E-value=1.2e+02 Score=23.59 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+-+ +......+.+++..+. .+ +..+|.+|+.++.+
T Consensus 105 ~laral~~~p~illlDEPt~~L--------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~ 158 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGL--------DPESRREFWELLRELK---KE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCC--------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 4556666789999999965433 2223444444554442 12 23566677765544
No 479
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.82 E-value=67 Score=25.83 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=29.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+=+ +......+..++..+. ...+..||.+|.+++.+
T Consensus 141 la~al~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 141 LARALAREPSLLLLDEPLSAL--------DAKLREELREELKELQ---RELGITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 444555679999999954322 2223344444444442 11233566677765543
No 480
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.70 E-value=1.1e+02 Score=25.79 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|++++.+.
T Consensus 148 laral~~~p~llllDEPt~gL--------D~~~~~~l~~~l~~l~---~~-~~til~vtH~~~~~~ 201 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGL--------DPMGASQIMKLLYDLN---KE-GITIIISTHDVDLVP 201 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 455556779999999964422 2223444445555543 22 345667777666544
No 481
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=30.54 E-value=64 Score=25.91 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+-+ +......+..++..+. .+.+..+|.+|+.++.+
T Consensus 141 laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNL--------DAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQVEA 194 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 445555779999999954422 2223444445554442 12234566677765443
No 482
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=30.32 E-value=62 Score=26.34 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=34.8
Q ss_pred HHHhhC-CCeEEEEccccccccccCCCC-CCccHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy10044 32 KAAKDR-TPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQNEGVVVLGATN 90 (235)
Q Consensus 32 ~~A~~~-~P~Il~iDeiD~l~~~r~~~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn 90 (235)
+..... .+.+|+||-+.+++....... ......+.+..++..|..+....++.||.+..
T Consensus 108 ~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 108 AILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 334445 789999999999864321111 11223345666666666665556667776643
No 483
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=30.25 E-value=1.7e+02 Score=23.93 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=32.2
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.++++||--+=+ +......+.+++..+.. ...+|.+|+..+.+.
T Consensus 153 ~laral~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~~-----~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGM--------TDEETEKTAELLKSLAG-----KHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCC--------CHHHHHHHHHHHHHHhc-----CCEEEEEECCHHHHH
Confidence 3455556779999999965432 22334455555555532 236677787766554
No 484
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=30.24 E-value=1.9e+02 Score=22.96 Aligned_cols=56 Identities=11% Similarity=0.001 Sum_probs=29.9
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
.+..|-...|.++++||-.+=+. ......+...++..+. .+ +..+|.+|+.++.+.
T Consensus 137 ~laral~~~p~llllDEP~~~LD-------~~~~~~l~~~ll~~~~---~~-~~tvi~~sh~~~~~~ 192 (204)
T cd03250 137 SLARAVYSDADIYLLDDPLSAVD-------AHVGRHIFENCILGLL---LN-NKTRILVTHQLQLLP 192 (204)
T ss_pred HHHHHHhcCCCEEEEeCccccCC-------HHHHHHHHHHHHHHhc---cC-CCEEEEEeCCHHHHh
Confidence 35556667899999999644321 1111223233444332 12 346677777765554
No 485
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=30.23 E-value=1.6e+02 Score=23.90 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=30.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|..++.+.
T Consensus 153 laral~~~p~llllDEP~~gL--------D~~~~~~~~~~l~~~~---~~-~~tiii~sH~~~~~~ 206 (224)
T cd03220 153 FAIATALEPDILLIDEVLAVG--------DAAFQEKCQRRLRELL---KQ-GKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 455556779999999964422 2223334444444442 22 335666777665544
No 486
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=30.14 E-value=75 Score=21.52 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHH-hcCccCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc---CCCCCcHHHHHHHHHH
Q psy10044 118 GRREILDLY-LGKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAID---GVPHVTMKYLEYARDK 182 (235)
Q Consensus 118 ~R~~il~~~-l~~~~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~---~~~~i~~~~~~~al~~ 182 (235)
-|..|.+.| ++++.....-...+++....++..++..+++.-. .++.. ..+.|+.+.++.|++.
T Consensus 5 lrk~I~~~FkL~Gl~Lr~eA~~~l~~~l~~~~~~e~e~~l~~Ii-~~v~kq~Lss~~v~~~~ie~Av~e 72 (73)
T PF12213_consen 5 LRKKIVKAFKLRGLSLRSEASKYLAEQLQSLSEEEREDWLDKII-DAVQKQPLSSSIVDKEHIESAVKE 72 (73)
T ss_dssp HHHHHHHHHHHTT-EE-HHHHHHHHHHTTTS-TTTHHHHHHHHH-HHHTTS--SSSEE-HHHHHHHHHH
T ss_pred HHHHHHHHhhhccceecHHHHHHHHHHHccCCHHHHHHHHHHHH-HHHhcCCCCCCccCHHHHHHHHHc
Confidence 355666655 4554333334677788888888888888777644 23322 3456888888888753
No 487
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=30.14 E-value=1.6e+02 Score=24.27 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccccccc
Q psy10044 24 ARRVRDLFKAAKDRTPCVVFIDEIDSVG 51 (235)
Q Consensus 24 ~~~i~~~F~~A~~~~P~Il~iDeiD~l~ 51 (235)
...+..+.+.+....|.++++|++-.+.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 4566777777777789999999998875
No 488
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.90 E-value=62 Score=27.63 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 161 laral~~~p~lLlLDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tiiiisH~~~~~ 214 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPTGGL--------DPKGEEDFINLFERLN---KEYKKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHHHhCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 445555679999999964432 2223444455555442 12234667788776544
No 489
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=29.81 E-value=34 Score=26.39 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=35.2
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCc---ccHHhhCCCcccEEEEcCCCC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN-RRDD---LDKALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn-~~~~---ld~al~rpgRf~~~i~i~~P~ 115 (235)
.+|++.+...| . +.........|...+..... .+++|..++ ..+. +=.++.. -...+++..|+
T Consensus 59 klvii~~~~~l-~-------~~~~~~~~~~l~~~l~~~~~--~~~lii~~~~~~~~~~k~~k~l~~---~~~~~~~~~~~ 125 (172)
T PF06144_consen 59 KLVIIKNAPFL-K-------DKLKKKEIKALIEYLSNPPP--DCILIIFSEEKLDKRKKLYKALKK---QAIVIECKKPK 125 (172)
T ss_dssp EEEEEE------T-------T-S-TTHHHHHHHHTTT--S--SEEEEEEES-S--HHHHHHHHHTT---TEEEEEE----
T ss_pred eEEEEecCccc-c-------ccccHHHHHHHHHHHhCCCC--CEEEEEEeCCchhhhhhHHHHHhc---ccceEEecCCC
Confidence 56777776555 1 11112245666666665433 333333433 3332 1122222 34578889999
Q ss_pred HHHHHHHHHHHhcCc
Q psy10044 116 YTGRREILDLYLGKI 130 (235)
Q Consensus 116 ~~~R~~il~~~l~~~ 130 (235)
..+....++..+...
T Consensus 126 ~~~~~~~i~~~~~~~ 140 (172)
T PF06144_consen 126 EQELPRWIKERAKKN 140 (172)
T ss_dssp TTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999888654
No 490
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=29.76 E-value=95 Score=25.50 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy10044 26 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN 90 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn 90 (235)
.=|.....|-.+.|.+++|||=-+-+ .-.++.+.|.-|..+....+-+|+.|-.
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSAL-----------DPElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSAL-----------DPELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccC-----------CHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 34555667778899999999943321 1347788888888776677777777643
No 491
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=29.45 E-value=72 Score=26.06 Aligned_cols=55 Identities=20% Similarity=0.083 Sum_probs=29.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.|+++||--+=+ +......+..++..+. .+.+..+|.+|.+++.+.
T Consensus 136 laral~~~p~vllLDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 190 (230)
T TIGR02770 136 IALALLLEPPFLIADEPTTDL--------DVVNQARVLKLLRELR---QLFGTGILLITHDLGVVA 190 (230)
T ss_pred HHHHHhcCCCEEEEcCCcccc--------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 444555679999999964422 2223344444454442 222335666777655443
No 492
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=28.98 E-value=1.8e+02 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
..|.+++|||++.+.. +......+..++..+. +.+..++.+|-++.++.
T Consensus 732 gr~~~~viDEaw~l~~-------~~~~a~fi~~~~k~~R----K~g~~~~~aTQsi~D~~ 780 (893)
T TIGR03744 732 GRPIVMVTDEGHIITT-------NPLLAPYVVKITKMWR----KLGAWFWLATQNLADFP 780 (893)
T ss_pred CceEEEEeehHhhhhc-------CHHHHHHHHHHHHHHH----hcCcEEEEEeCCHHHhh
Confidence 4589999999998742 2223344444554444 44557788888777764
No 493
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=28.87 E-value=2.1e+02 Score=23.29 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+-+ +......+..++..+. . +..+|.+|+.++.+
T Consensus 148 ~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~ 200 (237)
T cd03252 148 AIARALIHNPRILIFDEATSAL--------DYESEHAIMRNMHDIC---A--GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccC--------CHHHHHHHHHHHHHhc---C--CCEEEEEeCCHHHH
Confidence 3455556789999999965432 2223334444444442 2 23566777776654
No 494
>PRK14079 recF recombination protein F; Provisional
Probab=28.86 E-value=3.8e+02 Score=23.65 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=25.4
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
..|+|+++||+-+-+.. .. ...++..+.... . ++|.+|+.++.++.
T Consensus 289 ~~~pilLlDd~~seLD~-------~~----~~~l~~~l~~~~---q-~~it~t~~~~~~~~ 334 (349)
T PRK14079 289 GEAPVLLVDDFTAELDP-------RR----RGALLALAASLP---Q-AIVAGTEAPPGAAL 334 (349)
T ss_pred CCCCEEEEcccchhcCH-------HH----HHHHHHHHhcCC---c-EEEEcCCCCCCCce
Confidence 56899999998664321 11 122333332221 2 56667777766653
No 495
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=28.80 E-value=77 Score=25.98 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD 94 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ 94 (235)
+..|-...|.++++||--+=. +......+..++..+. .+.+..+|.+|..++.
T Consensus 125 la~al~~~p~lllLDEPt~gL--------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~ 177 (230)
T TIGR01184 125 IARALSIRPKVLLLDEPFGAL--------DALTRGNLQEELMQIW---EEHRVTVLMVTHDVDE 177 (230)
T ss_pred HHHHHHcCCCEEEEcCCCcCC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 444555779999999954322 2233444444444432 1223456667776554
No 496
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=28.68 E-value=1e+02 Score=24.79 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.++++||--+-+ +......+..++..+. . . ..+|.+|++++.+.
T Consensus 144 la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~---~-~-~tii~~sH~~~~~~ 196 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGL--------DPASRRAIWDLILEVR---K-G-RSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCC--------CHHHHHHHHHHHHHHh---c-C-CEEEEEcCCHHHHH
Confidence 444455679999999965433 2223444455555543 2 2 46777888766554
No 497
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=28.67 E-value=1.7e+02 Score=23.25 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 29 DLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 29 ~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
-.+..|-...|.++++||--+=+ +......+..++..+. .. ...+|.+|+.++.+
T Consensus 113 v~laral~~~p~illlDEPt~~L--------D~~~~~~l~~~L~~~~---~~-~~tiii~sh~~~~~ 167 (200)
T cd03217 113 NEILQLLLLEPDLAILDEPDSGL--------DIDALRLVAEVINKLR---EE-GKSVLIITHYQRLL 167 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 33555666789999999953321 2223344445555543 12 23555577665543
No 498
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.49 E-value=3.3e+02 Score=24.30 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=11.6
Q ss_pred CCCeEEEEccccccc
Q psy10044 37 RTPCVVFIDEIDSVG 51 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~ 51 (235)
..|+|+++||+-+=+
T Consensus 301 ~~~pilLLDD~~seL 315 (365)
T TIGR00611 301 GEYPILLLDDVASEL 315 (365)
T ss_pred CCCCEEEEcCchhcc
Confidence 468999999986643
No 499
>KOG0058|consensus
Probab=28.32 E-value=1.4e+02 Score=29.42 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=29.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHH-hcCCCCCCCeEEEE
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE-MDGFHQNEGVVVLG 87 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~-ld~~~~~~~v~vIa 87 (235)
....|--..|+||++||.=+-+ +.++..++++-|.. ++ +..|+|||
T Consensus 614 AIARALlr~P~VLILDEATSAL--------DaeSE~lVq~aL~~~~~----~rTVlvIA 660 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSAL--------DAESEYLVQEALDRLMQ----GRTVLVIA 660 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhc--------chhhHHHHHHHHHHhhc----CCeEEEEe
Confidence 4455556789999999975543 23345566666643 33 35677775
No 500
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=28.28 E-value=16 Score=25.98 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=18.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 137 VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 137 l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
+.+-+...+.+....|..+|.+|...|..+|...++.+||.-++.+-
T Consensus 21 ~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D 67 (93)
T PF02269_consen 21 LPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKD 67 (93)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcC
Confidence 44445555567778899999999999999999999999999887654
Done!