Query psy10044
Match_columns 235
No_of_seqs 202 out of 2034
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:26:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.8E-44 6.1E-49 320.5 20.7 184 3-186 206-392 (405)
2 4b4t_I 26S protease regulatory 100.0 3.3E-43 1.1E-47 313.6 19.4 185 3-187 240-427 (437)
3 4b4t_H 26S protease regulatory 100.0 2.3E-42 8E-47 310.6 20.4 187 3-189 267-456 (467)
4 4b4t_L 26S protease subunit RP 100.0 4.3E-42 1.5E-46 309.1 20.7 184 3-186 239-425 (437)
5 4b4t_M 26S protease regulatory 100.0 3E-42 1E-46 309.9 18.5 184 3-186 239-425 (434)
6 4b4t_K 26S protease regulatory 100.0 3.2E-41 1.1E-45 302.9 21.4 183 3-185 230-416 (428)
7 2ce7_A Cell division protein F 100.0 2.3E-40 8E-45 301.4 24.5 228 4-233 74-304 (476)
8 2dhr_A FTSH; AAA+ protein, hex 100.0 3E-38 1E-42 289.0 20.6 228 3-232 88-318 (499)
9 3cf2_A TER ATPase, transitiona 100.0 3.7E-40 1.3E-44 314.8 6.5 185 3-187 535-747 (806)
10 3cf2_A TER ATPase, transitiona 100.0 3.8E-37 1.3E-41 294.1 15.1 217 3-225 262-498 (806)
11 2x8a_A Nuclear valosin-contain 100.0 1.7E-31 6E-36 227.7 18.6 184 3-187 68-268 (274)
12 3cf0_A Transitional endoplasmi 100.0 5E-30 1.7E-34 221.1 18.5 184 3-186 73-284 (301)
13 1lv7_A FTSH; alpha/beta domain 100.0 4.2E-29 1.4E-33 210.1 21.4 184 4-187 70-256 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.5E-29 1.2E-33 218.0 19.9 180 4-186 71-302 (322)
15 3hu3_A Transitional endoplasmi 100.0 5.3E-29 1.8E-33 227.8 19.0 202 3-205 262-483 (489)
16 3h4m_A Proteasome-activating n 100.0 2.8E-28 9.5E-33 207.6 20.6 184 3-186 75-261 (285)
17 3eie_A Vacuolar protein sortin 100.0 9.4E-29 3.2E-33 215.0 17.9 181 4-187 76-302 (322)
18 2qp9_X Vacuolar protein sortin 100.0 5.6E-28 1.9E-32 213.0 19.0 180 4-186 109-334 (355)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.3E-28 4.3E-33 206.7 10.8 189 4-192 64-258 (262)
20 1ixz_A ATP-dependent metallopr 100.0 4.7E-27 1.6E-31 197.2 19.3 177 4-180 74-253 (254)
21 2zan_A Vacuolar protein sortin 99.9 1.5E-27 5.3E-32 216.0 15.3 160 4-166 193-355 (444)
22 1iy2_A ATP-dependent metallopr 99.9 8.5E-26 2.9E-30 192.2 20.0 177 4-180 98-277 (278)
23 1ypw_A Transitional endoplasmi 99.9 5.2E-29 1.8E-33 240.0 -5.2 183 4-186 536-746 (806)
24 3d8b_A Fidgetin-like protein 1 99.9 3.3E-25 1.1E-29 195.3 17.3 182 3-187 141-338 (357)
25 2r62_A Cell division protease 99.9 8.4E-28 2.9E-32 203.0 0.5 184 4-187 69-257 (268)
26 3t15_A Ribulose bisphosphate c 99.9 5.3E-26 1.8E-30 195.4 7.2 146 4-154 61-222 (293)
27 3b9p_A CG5977-PA, isoform A; A 99.9 1E-24 3.4E-29 186.7 15.0 181 3-186 78-275 (297)
28 3vfd_A Spastin; ATPase, microt 99.9 8.4E-24 2.9E-28 188.2 18.4 181 3-186 172-368 (389)
29 1ypw_A Transitional endoplasmi 99.9 3E-21 1E-25 186.0 16.4 184 3-187 262-463 (806)
30 2c9o_A RUVB-like 1; hexameric 99.7 4.7E-20 1.6E-24 167.3 -9.1 145 5-158 91-262 (456)
31 3kw6_A 26S protease regulatory 99.7 6.2E-16 2.1E-20 106.9 9.6 74 112-185 1-75 (78)
32 2krk_A 26S protease regulatory 99.6 5.8E-16 2E-20 109.0 9.1 76 111-186 8-84 (86)
33 3vlf_B 26S protease regulatory 99.6 2E-15 7E-20 106.7 9.0 81 115-195 2-83 (88)
34 3syl_A Protein CBBX; photosynt 99.5 1.8E-14 6E-19 123.3 10.4 165 3-177 98-280 (309)
35 3aji_B S6C, proteasome (prosom 99.5 3.5E-14 1.2E-18 99.1 8.1 73 115-187 2-75 (83)
36 3uk6_A RUVB-like 2; hexameric 99.5 7.6E-14 2.6E-18 122.2 9.0 144 24-184 166-331 (368)
37 3m6a_A ATP-dependent protease 99.5 4.9E-14 1.7E-18 130.4 6.7 172 4-187 133-345 (543)
38 1d2n_A N-ethylmaleimide-sensit 99.4 2.1E-13 7.1E-18 115.0 8.7 171 4-185 89-266 (272)
39 2dzn_B 26S protease regulatory 99.4 9.1E-14 3.1E-18 96.9 4.6 71 117-187 1-72 (82)
40 1ofh_A ATP-dependent HSL prote 99.4 1.2E-12 4.1E-17 111.5 9.4 179 4-184 75-300 (310)
41 1g41_A Heat shock protein HSLU 99.3 8.8E-14 3E-18 125.2 0.3 111 3-123 74-188 (444)
42 1r6b_X CLPA protein; AAA+, N-t 99.3 1.4E-11 4.7E-16 118.0 13.9 173 3-185 241-435 (758)
43 3pfi_A Holliday junction ATP-d 99.3 8.4E-11 2.9E-15 101.7 15.3 160 3-185 79-256 (338)
44 2v1u_A Cell division control p 99.3 5.7E-11 1.9E-15 103.8 14.4 171 4-184 78-277 (387)
45 2z4s_A Chromosomal replication 99.3 2.2E-11 7.4E-16 109.9 11.9 167 4-184 160-333 (440)
46 1hqc_A RUVB; extended AAA-ATPa 99.2 3E-10 1E-14 97.4 14.1 159 4-184 63-239 (324)
47 3hws_A ATP-dependent CLP prote 99.1 1.6E-10 5.5E-15 101.3 10.2 176 3-180 75-346 (363)
48 1qvr_A CLPB protein; coiled co 99.1 1.5E-10 5E-15 112.3 10.0 154 2-166 224-395 (854)
49 3pxg_A Negative regulator of g 99.1 1.1E-10 3.8E-15 106.0 7.5 156 2-183 234-406 (468)
50 1jbk_A CLPB protein; beta barr 99.1 1.8E-10 6.1E-15 90.3 7.0 110 3-123 77-194 (195)
51 1l8q_A Chromosomal replication 99.1 4.2E-10 1.4E-14 96.9 9.4 166 4-185 65-242 (324)
52 2qby_A CDC6 homolog 1, cell di 99.1 1.8E-09 6.3E-14 93.9 13.5 170 4-184 76-273 (386)
53 3pvs_A Replication-associated 99.1 1E-09 3.5E-14 99.1 11.8 156 3-185 74-246 (447)
54 3pxi_A Negative regulator of g 99.1 7.1E-10 2.4E-14 106.2 11.4 139 2-166 234-388 (758)
55 3bos_A Putative DNA replicatio 99.1 8.1E-10 2.8E-14 90.1 10.2 154 4-181 80-241 (242)
56 2qby_B CDC6 homolog 3, cell di 99.0 1.5E-09 5.1E-14 95.0 11.6 162 4-184 81-271 (384)
57 1njg_A DNA polymerase III subu 99.0 3.1E-09 1.1E-13 86.0 12.0 135 24-180 108-248 (250)
58 2chg_A Replication factor C sm 99.0 2.1E-09 7.2E-14 86.0 10.8 122 37-181 101-224 (226)
59 2r44_A Uncharacterized protein 99.0 5.4E-09 1.8E-13 90.2 12.8 132 40-185 111-299 (331)
60 1g8p_A Magnesium-chelatase 38 98.9 4.4E-09 1.5E-13 91.0 11.0 133 39-185 145-324 (350)
61 1fnn_A CDC6P, cell division co 98.9 1.4E-08 4.8E-13 88.7 13.5 135 37-185 124-276 (389)
62 3pxi_A Negative regulator of g 98.9 5.6E-09 1.9E-13 100.0 9.5 143 3-163 548-724 (758)
63 2p65_A Hypothetical protein PF 98.9 7.3E-09 2.5E-13 80.9 8.3 103 3-115 77-187 (187)
64 1um8_A ATP-dependent CLP prote 98.9 1.9E-09 6.4E-14 94.9 5.3 180 3-184 96-366 (376)
65 1in4_A RUVB, holliday junction 98.8 3.4E-07 1.2E-11 79.3 18.8 101 82-185 150-252 (334)
66 1r6b_X CLPA protein; AAA+, N-t 98.8 7.9E-09 2.7E-13 98.8 8.8 143 4-162 513-714 (758)
67 4fcw_A Chaperone protein CLPB; 98.8 1.2E-08 4.1E-13 86.8 8.4 145 4-164 75-279 (311)
68 3u61_B DNA polymerase accessor 98.8 1.5E-09 5.3E-14 93.2 2.1 148 4-181 73-235 (324)
69 3te6_A Regulatory protein SIR3 98.7 2.3E-08 7.8E-13 86.4 7.6 112 4-130 80-214 (318)
70 3nbx_X ATPase RAVA; AAA+ ATPas 98.7 1.9E-08 6.5E-13 91.9 6.8 131 38-183 109-285 (500)
71 1sxj_D Activator 1 41 kDa subu 98.7 3.3E-07 1.1E-11 79.1 13.6 126 38-181 133-261 (353)
72 2c9o_A RUVB-like 1; hexameric 98.7 9.8E-08 3.3E-12 86.2 10.3 127 39-183 296-437 (456)
73 3f9v_A Minichromosome maintena 98.6 9.4E-08 3.2E-12 89.2 10.1 132 39-185 392-589 (595)
74 1sxj_A Activator 1 95 kDa subu 98.6 6.4E-08 2.2E-12 88.8 8.3 157 4-181 102-272 (516)
75 1jr3_A DNA polymerase III subu 98.6 5.2E-07 1.8E-11 78.4 13.0 133 26-180 103-241 (373)
76 1sxj_B Activator 1 37 kDa subu 98.5 8E-07 2.7E-11 75.5 12.1 147 6-181 74-229 (323)
77 2chq_A Replication factor C sm 98.5 4.7E-07 1.6E-11 76.8 10.2 121 37-180 101-223 (319)
78 1qvr_A CLPB protein; coiled co 98.5 1.8E-07 6.3E-12 90.6 6.6 145 4-164 616-820 (854)
79 1w5s_A Origin recognition comp 98.4 3.2E-06 1.1E-10 74.2 12.3 139 37-184 137-294 (412)
80 1iqp_A RFCS; clamp loader, ext 98.4 4E-06 1.4E-10 71.2 12.0 121 37-180 109-231 (327)
81 1g41_A Heat shock protein HSLU 98.2 1.2E-05 4E-10 72.3 12.8 152 27-182 241-432 (444)
82 1a5t_A Delta prime, HOLB; zinc 98.2 1.1E-05 3.9E-10 69.6 10.7 103 24-146 90-196 (334)
83 3k1j_A LON protease, ATP-depen 98.1 3.3E-06 1.1E-10 78.8 7.4 131 38-182 201-374 (604)
84 4akg_A Glutathione S-transfera 98.1 1.1E-05 3.7E-10 85.9 11.2 114 4-130 1293-1434(2695)
85 1sxj_E Activator 1 40 kDa subu 98.1 2.3E-05 7.9E-10 67.6 11.0 106 38-161 134-242 (354)
86 3cmw_A Protein RECA, recombina 97.9 1.2E-05 4E-10 82.5 5.6 75 17-92 1135-1218(1706)
87 1sxj_C Activator 1 40 kDa subu 97.8 3.4E-05 1.2E-09 66.6 7.5 121 39-180 111-236 (340)
88 1ojl_A Transcriptional regulat 97.8 2.3E-05 7.9E-10 66.9 6.3 155 4-178 53-247 (304)
89 2bjv_A PSP operon transcriptio 97.8 9.5E-05 3.2E-09 61.3 9.6 153 4-176 57-250 (265)
90 2gno_A DNA polymerase III, gam 97.8 7.6E-05 2.6E-09 63.8 9.2 100 4-127 49-152 (305)
91 3f8t_A Predicted ATPase involv 97.3 0.0013 4.4E-08 59.5 10.0 134 40-187 302-487 (506)
92 3co5_A Putative two-component 97.2 0.0008 2.7E-08 50.5 6.3 83 6-113 53-141 (143)
93 3n70_A Transport activator; si 96.9 0.00069 2.4E-08 51.0 3.5 65 4-92 52-116 (145)
94 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00076 2.6E-08 58.1 3.1 92 5-99 151-242 (331)
95 2r2a_A Uncharacterized protein 96.7 0.0033 1.1E-07 50.2 6.5 73 37-119 86-158 (199)
96 1jr3_D DNA polymerase III, del 96.5 0.025 8.5E-07 48.4 11.1 139 25-183 59-209 (343)
97 2fna_A Conserved hypothetical 96.0 0.044 1.5E-06 46.3 10.0 119 27-157 124-251 (357)
98 4akg_A Glutathione S-transfera 95.7 0.16 5.6E-06 54.7 14.5 141 3-162 669-839 (2695)
99 1ny5_A Transcriptional regulat 95.2 0.017 6E-07 50.6 4.6 155 4-179 188-383 (387)
100 2qen_A Walker-type ATPase; unk 95.0 0.098 3.4E-06 44.0 8.8 115 34-157 124-247 (350)
101 3vkg_A Dynein heavy chain, cyt 94.8 0.42 1.4E-05 52.3 14.6 85 40-130 1376-1472(3245)
102 3cmu_A Protein RECA, recombina 93.2 0.12 4E-06 54.3 6.4 67 22-88 1489-1560(2050)
103 2kjq_A DNAA-related protein; s 92.9 0.083 2.8E-06 39.8 3.7 78 4-111 64-145 (149)
104 3dzd_A Transcriptional regulat 92.8 0.41 1.4E-05 41.5 8.5 114 30-161 217-359 (368)
105 1svm_A Large T antigen; AAA+ f 92.8 0.033 1.1E-06 48.8 1.4 69 37-113 215-284 (377)
106 3ec2_A DNA replication protein 92.4 0.12 4.1E-06 39.6 4.0 77 4-93 67-144 (180)
107 4ag6_A VIRB4 ATPase, type IV s 91.7 2 7E-05 37.0 11.7 106 5-122 223-342 (392)
108 2iut_A DNA translocase FTSK; n 86.4 1.3 4.4E-05 40.8 6.5 74 40-124 345-420 (574)
109 3vkg_A Dynein heavy chain, cyt 85.9 3.1 0.0001 45.8 9.8 104 3-125 628-751 (3245)
110 2w58_A DNAI, primosome compone 79.8 1.1 3.8E-05 34.6 2.9 47 4-52 82-129 (202)
111 1ye8_A Protein THEP1, hypothet 77.7 21 0.00071 27.1 10.4 69 35-118 96-167 (178)
112 3cmu_A Protein RECA, recombina 76.9 1.8 6.3E-05 45.5 4.2 67 25-91 793-868 (2050)
113 2ius_A DNA translocase FTSK; n 74.7 3.8 0.00013 37.2 5.2 77 38-125 296-375 (512)
114 1e9r_A Conjugal transfer prote 69.9 41 0.0014 29.0 10.8 75 37-129 278-362 (437)
115 3b0c_W CENP-W, centromere prot 66.4 11 0.00036 24.7 4.7 34 151-184 38-71 (76)
116 2nqb_D Histone H2B; nucleosome 66.1 15 0.00051 26.5 5.8 58 146-214 62-119 (123)
117 1id3_B Histone H4; nucleosome 65.6 7.3 0.00025 27.2 4.0 35 149-183 59-93 (102)
118 1tzy_B Histone H2B; histone-fo 64.6 16 0.00055 26.5 5.7 58 146-214 65-122 (126)
119 1taf_B TFIID TBP associated fa 64.5 9.4 0.00032 24.8 4.0 31 151-181 39-69 (70)
120 1z6t_A APAF-1, apoptotic prote 64.0 32 0.0011 30.9 9.1 84 38-148 236-321 (591)
121 1n0w_A DNA repair protein RAD5 64.0 9 0.00031 29.9 4.8 69 27-95 108-177 (243)
122 2ehv_A Hypothetical protein PH 63.4 12 0.00042 29.2 5.6 79 25-112 122-206 (251)
123 2yfw_B Histone H4, H4; cell cy 62.1 9.9 0.00034 26.5 4.2 34 150-183 61-94 (103)
124 3sfz_A APAF-1, apoptotic pepti 61.7 32 0.0011 33.6 9.2 84 38-148 236-321 (1249)
125 1tzy_D Histone H4-VI; histone- 61.3 9.7 0.00033 26.5 4.0 34 150-183 61-94 (103)
126 2hue_C Histone H4; mini beta s 60.7 7 0.00024 26.2 3.0 36 148-183 40-75 (84)
127 2qgz_A Helicase loader, putati 58.3 4 0.00014 34.1 1.8 46 4-51 181-227 (308)
128 1b67_A Protein (histone HMFA); 57.0 12 0.00042 23.6 3.7 34 150-183 34-67 (68)
129 3eod_A Protein HNR; response r 57.0 38 0.0013 23.0 6.7 86 28-129 41-126 (130)
130 3b4r_A Putative zinc metallopr 55.7 8.1 0.00028 30.9 3.1 27 201-231 50-76 (224)
131 1taf_A TFIID TBP associated fa 54.7 24 0.00081 22.7 4.7 37 147-183 30-66 (68)
132 2jsd_A Matrix metalloproteinas 54.3 5.3 0.00018 29.9 1.7 12 200-211 109-120 (160)
133 2xs4_A Karilysin protease; hyd 53.7 5.4 0.00018 30.2 1.7 12 200-211 116-127 (167)
134 1xp8_A RECA protein, recombina 52.8 26 0.0009 30.0 6.2 58 32-89 146-208 (366)
135 2ovx_A Matrix metalloproteinas 52.5 4.8 0.00016 30.3 1.2 12 200-211 112-123 (159)
136 2cvh_A DNA repair and recombin 52.2 12 0.00042 28.6 3.7 16 38-53 105-120 (220)
137 1hy7_A Stromelysin-1, MMP-3; m 51.3 6.2 0.00021 30.1 1.7 12 200-211 114-125 (173)
138 1f1e_A Histone fold protein; a 49.3 20 0.00067 27.0 4.1 36 151-186 115-150 (154)
139 1n1j_A NF-YB; histone-like PAI 48.9 29 0.00098 23.5 4.7 35 151-185 43-77 (93)
140 2jss_A Chimera of histone H2B. 48.8 69 0.0023 24.8 7.4 57 147-214 33-89 (192)
141 1cge_A Fibroblast collagenase; 47.3 6.4 0.00022 29.9 1.2 12 200-211 112-123 (168)
142 2ly8_A Budding yeast chaperone 46.7 32 0.0011 24.8 4.7 34 150-183 79-112 (121)
143 2w0m_A SSO2452; RECA, SSPF, un 46.5 54 0.0019 24.8 6.7 58 26-92 109-168 (235)
144 3lte_A Response regulator; str 46.0 66 0.0022 21.7 8.2 84 28-129 40-125 (132)
145 1g6h_A High-affinity branched- 45.6 48 0.0016 26.6 6.4 54 31-96 164-217 (257)
146 2ghi_A Transport protein; mult 45.1 69 0.0024 25.7 7.3 52 31-95 166-217 (260)
147 2zr9_A Protein RECA, recombina 44.6 16 0.00054 31.2 3.4 27 26-52 127-153 (349)
148 1ku5_A HPHA, archaeal histon; 44.6 21 0.00071 22.7 3.2 35 147-181 35-69 (70)
149 1hv5_A Stromelysin 3; inhibiti 44.2 7.6 0.00026 29.3 1.2 12 200-211 114-125 (165)
150 2ff7_A Alpha-hemolysin translo 44.2 91 0.0031 24.7 7.8 53 30-95 155-207 (247)
151 2yz2_A Putative ABC transporte 42.7 54 0.0018 26.4 6.3 56 29-96 147-202 (266)
152 1i76_A MMP-8;, neutrophil coll 42.6 10 0.00035 28.5 1.7 12 200-211 113-124 (163)
153 2d2e_A SUFC protein; ABC-ATPas 42.3 50 0.0017 26.4 6.0 53 31-95 154-206 (250)
154 2ixe_A Antigen peptide transpo 41.9 48 0.0016 26.9 5.8 53 30-93 166-218 (271)
155 3b0c_T CENP-T, centromere prot 41.2 32 0.0011 24.3 4.0 68 112-185 7-74 (111)
156 3cmw_A Protein RECA, recombina 40.9 20 0.00067 37.4 3.9 80 10-89 1481-1565(1706)
157 3hr8_A Protein RECA; alpha and 40.8 57 0.0019 27.8 6.3 63 26-88 127-194 (356)
158 2pjz_A Hypothetical protein ST 39.6 72 0.0025 25.8 6.5 51 30-95 138-188 (263)
159 2z43_A DNA repair and recombin 39.4 14 0.0005 30.8 2.3 64 26-89 190-255 (324)
160 2i3b_A HCR-ntpase, human cance 39.2 95 0.0033 23.5 6.9 15 36-50 103-117 (189)
161 1slm_A Stromelysin-1; hydrolas 39.2 9.9 0.00034 31.1 1.2 12 200-211 196-207 (255)
162 1sgw_A Putative ABC transporte 39.1 43 0.0015 26.2 5.0 54 30-95 143-196 (214)
163 3ilh_A Two component response 37.3 97 0.0033 21.1 6.6 19 112-130 122-140 (146)
164 4e7p_A Response regulator; DNA 37.2 1E+02 0.0035 21.4 7.8 87 27-130 55-141 (150)
165 1vpl_A ABC transporter, ATP-bi 37.0 40 0.0014 27.2 4.6 53 30-94 156-208 (256)
166 3hzh_A Chemotaxis response reg 36.7 1.1E+02 0.0036 21.6 6.6 84 28-128 71-156 (157)
167 2cbz_A Multidrug resistance-as 36.6 79 0.0027 24.9 6.3 19 30-48 137-155 (237)
168 3lda_A DNA repair protein RAD5 35.8 27 0.00091 30.4 3.5 66 26-91 261-327 (400)
169 4a74_A DNA repair and recombin 35.0 14 0.00048 28.4 1.4 76 36-113 123-199 (231)
170 2olj_A Amino acid ABC transpor 34.8 47 0.0016 26.9 4.7 53 30-94 169-221 (263)
171 2orw_A Thymidine kinase; TMTK, 34.7 43 0.0015 25.3 4.2 59 38-113 76-138 (184)
172 2oxc_A Probable ATP-dependent 34.4 39 0.0013 26.2 4.0 51 40-101 168-218 (230)
173 3ayu_A 72 kDa type IV collagen 34.1 14 0.00047 28.0 1.2 12 200-211 115-126 (167)
174 1y93_A Macrophage metalloelast 33.8 14 0.00048 27.7 1.2 12 200-211 109-120 (159)
175 1n1j_B NF-YC; histone-like PAI 33.5 39 0.0013 23.0 3.4 31 153-183 55-85 (97)
176 2y6d_A Matrilysin; hydrolase; 33.4 18 0.0006 27.6 1.7 12 200-211 116-127 (174)
177 2dr3_A UPF0273 protein PH0284; 32.7 97 0.0033 23.7 6.2 44 27-75 117-160 (247)
178 3kta_B Chromosome segregation 32.6 1.1E+02 0.0037 23.0 6.2 33 19-51 65-99 (173)
179 1sat_A Serratia protease; para 32.3 17 0.00059 32.4 1.7 12 200-211 171-182 (471)
180 2pcj_A ABC transporter, lipopr 32.1 54 0.0018 25.7 4.5 51 30-92 150-200 (224)
181 4g92_C HAPE; transcription fac 32.0 41 0.0014 24.0 3.4 32 152-183 76-107 (119)
182 1b0u_A Histidine permease; ABC 31.9 46 0.0016 26.8 4.2 53 30-94 163-215 (262)
183 2b8t_A Thymidine kinase; deoxy 31.9 59 0.002 25.7 4.7 65 29-112 76-150 (223)
184 1g5t_A COB(I)alamin adenosyltr 31.9 1.5E+02 0.0052 22.9 7.0 73 24-112 102-178 (196)
185 2zu0_C Probable ATP-dependent 31.7 1.1E+02 0.0037 24.6 6.4 52 32-95 176-227 (267)
186 3dkp_A Probable ATP-dependent 31.5 23 0.00078 27.7 2.2 14 39-52 176-189 (245)
187 1rm8_A MMP-16, matrix metallop 31.5 20 0.00068 27.0 1.7 12 200-211 118-129 (169)
188 1g9k_A Serralysin; beta jelly 31.3 18 0.00063 32.2 1.7 12 200-211 164-175 (463)
189 1f2t_B RAD50 ABC-ATPase; DNA d 31.2 1.5E+02 0.0051 21.5 8.3 75 18-111 57-135 (148)
190 2byk_B Chrac-14; nucleosome sl 31.0 77 0.0026 22.8 4.8 34 152-185 45-78 (128)
191 1kap_P Alkaline protease; calc 30.9 19 0.00064 32.3 1.7 12 200-211 180-191 (479)
192 1k7i_A PROC, secreted protease 29.9 20 0.00068 32.1 1.7 12 200-211 183-194 (479)
193 1ji0_A ABC transporter; ATP bi 29.8 49 0.0017 26.2 3.9 52 30-93 149-200 (240)
194 1tue_A Replication protein E1; 29.6 48 0.0017 26.2 3.7 28 83-113 148-178 (212)
195 1v5w_A DMC1, meiotic recombina 29.1 37 0.0013 28.6 3.2 64 27-90 206-272 (343)
196 2qxy_A Response regulator; reg 29.0 1.1E+02 0.0038 20.8 5.5 20 27-46 37-56 (142)
197 3qkt_A DNA double-strand break 29.0 1.9E+02 0.0064 23.9 7.7 22 28-49 262-283 (339)
198 1t6n_A Probable ATP-dependent 28.9 60 0.0021 24.6 4.3 14 39-52 159-172 (220)
199 1vec_A ATP-dependent RNA helic 28.4 44 0.0015 25.1 3.3 47 39-97 147-193 (206)
200 2i1q_A DNA repair and recombin 28.1 26 0.00089 29.0 2.0 62 27-88 192-255 (322)
201 830c_A MMP-13, MMP-13; matrix 28.1 20 0.00068 27.2 1.2 12 200-211 114-125 (168)
202 1cr0_A DNA primase/helicase; R 27.8 73 0.0025 25.7 4.8 21 32-52 141-161 (296)
203 1q0u_A Bstdead; DEAD protein, 27.7 49 0.0017 25.2 3.5 14 39-52 151-164 (219)
204 3gfo_A Cobalt import ATP-bindi 27.7 1.7E+02 0.0057 23.7 6.9 55 31-96 154-208 (275)
205 3nhm_A Response regulator; pro 27.5 1.4E+02 0.0048 19.9 7.6 85 27-129 36-122 (133)
206 1pzn_A RAD51, DNA repair and r 27.3 50 0.0017 27.8 3.7 59 37-95 230-289 (349)
207 4aby_A DNA repair protein RECN 26.6 73 0.0025 27.0 4.7 58 34-111 309-368 (415)
208 3ma2_D Matrix metalloproteinas 25.8 23 0.00079 27.2 1.2 12 200-211 123-134 (181)
209 1srr_A SPO0F, sporulation resp 25.7 1.4E+02 0.0049 19.6 5.4 18 29-46 38-55 (124)
210 3ado_A Lambda-crystallin; L-gu 25.4 1.9E+02 0.0064 24.2 6.9 50 63-114 98-150 (319)
211 3grc_A Sensor protein, kinase; 25.2 1.6E+02 0.0055 19.8 6.3 86 27-129 39-127 (140)
212 1to0_A Hypothetical UPF0247 pr 24.7 1.2E+02 0.0042 22.9 5.1 58 66-128 87-147 (167)
213 2rjn_A Response regulator rece 24.5 1.8E+02 0.0061 20.1 6.0 19 28-46 41-59 (154)
214 3hdg_A Uncharacterized protein 24.5 1E+02 0.0034 20.9 4.5 19 28-46 41-59 (137)
215 1w1w_A Structural maintenance 24.2 1.9E+02 0.0063 24.8 6.9 32 20-51 335-368 (430)
216 3b2n_A Uncharacterized protein 24.0 1.7E+02 0.0058 19.7 7.1 85 28-129 39-123 (133)
217 1ns5_A Hypothetical protein YB 23.5 2E+02 0.007 21.3 6.1 72 40-128 68-142 (155)
218 2r6a_A DNAB helicase, replicat 23.4 53 0.0018 28.7 3.2 19 35-53 310-328 (454)
219 2ys9_A Homeobox and leucine zi 23.2 93 0.0032 20.0 3.5 34 122-156 20-54 (70)
220 3b6e_A Interferon-induced heli 23.2 1.2E+02 0.004 22.6 4.9 13 39-51 163-175 (216)
221 3io5_A Recombination and repai 23.2 81 0.0028 26.8 4.1 54 34-87 107-167 (333)
222 3iuy_A Probable ATP-dependent 23.1 58 0.002 25.0 3.1 51 39-101 168-218 (228)
223 1vc3_B L-aspartate-alpha-decar 23.1 46 0.0016 22.9 2.1 19 32-50 72-90 (96)
224 1uhe_A Aspartate 1-decarboxyla 23.0 52 0.0018 22.7 2.4 20 32-51 70-89 (97)
225 2nq2_C Hypothetical ABC transp 22.7 67 0.0023 25.7 3.5 53 31-94 139-191 (253)
226 1nlf_A Regulatory protein REPA 22.5 66 0.0023 25.8 3.4 16 38-53 133-148 (279)
227 1c7k_A NCNP, zinc endoprotease 22.0 39 0.0013 24.7 1.7 11 201-211 79-89 (132)
228 2l5a_A Histone H3-like centrom 21.7 1.4E+02 0.0047 24.0 5.0 36 148-183 191-226 (235)
229 3nh6_A ATP-binding cassette SU 21.7 1.4E+02 0.0048 24.7 5.4 52 30-94 200-251 (306)
230 1qde_A EIF4A, translation init 21.6 51 0.0017 25.1 2.5 14 39-52 156-169 (224)
231 3b85_A Phosphate starvation-in 21.4 49 0.0017 25.7 2.4 43 36-96 120-162 (208)
232 3auy_A DNA double-strand break 21.0 2.2E+02 0.0077 23.8 6.7 20 32-51 298-318 (371)
233 3plx_B Aspartate 1-decarboxyla 21.0 59 0.002 22.6 2.4 20 32-51 71-90 (102)
234 1u94_A RECA protein, recombina 20.9 73 0.0025 27.0 3.5 56 34-89 137-197 (356)
235 3b0b_C CENP-X, centromere prot 20.9 1.3E+02 0.0046 19.8 4.1 63 116-184 11-77 (81)
236 1mv5_A LMRA, multidrug resista 20.9 1.4E+02 0.0047 23.5 5.0 20 30-49 149-168 (243)
237 1o6d_A Hypothetical UPF0247 pr 20.7 1.5E+02 0.0051 22.3 4.8 58 66-129 82-142 (163)
238 1l6j_A Matrix metalloproteinas 20.7 34 0.0012 30.1 1.3 12 200-211 377-388 (425)
239 3ba0_A Macrophage metalloelast 20.6 39 0.0013 28.9 1.7 11 201-211 109-119 (365)
240 3nau_A Zinc fingers and homeob 20.2 1.4E+02 0.0049 18.8 3.9 45 115-160 12-56 (66)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-44 Score=320.51 Aligned_cols=184 Identities=35% Similarity=0.587 Sum_probs=173.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+|+||+.|+++++.++|+|+++++++.+|..|+..+||||||||+|+++++|.... .+....+++++||.+||++...
T Consensus 206 ~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp HTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred hCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 47899999999999999999999999999999999999999999999999886443 2345678999999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|+||||||+|+.||||++||||||++|+|++|+.++|.+||+.++++. ...++|+..||+.|+||||+||+++|++|
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA 365 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEA 365 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 56789999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
++.|+++++..|+++||+.|++++.+.
T Consensus 366 ~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 366 GMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 999999999999999999999998764
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-43 Score=313.56 Aligned_cols=185 Identities=33% Similarity=0.547 Sum_probs=173.7
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
++++|+.++++++.++|+|+++++++.+|..|++.+||||||||+|+++.+|+... .+....+++++||++||++...
T Consensus 240 ~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp HTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred hCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 47899999999999999999999999999999999999999999999999986443 3446678999999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|+||||||+|+.|||||+||||||++|+|++|+.++|.+||+.++++. ...++|++.||+.|+||||+||+++|++|
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 56789999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
++.|+++++..|+.+||+.|++++.++.
T Consensus 400 ~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 400 GLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999997753
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-42 Score=310.64 Aligned_cols=187 Identities=34% Similarity=0.522 Sum_probs=174.9
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCC--CccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~~ 80 (235)
++++|+.+++++|.++|+|+++++++.+|..|+..+||||||||+|+++.+|+.... .....++++++|.+||++...
T Consensus 267 ~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 267 TDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp HTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred cCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 478999999999999999999999999999999999999999999999999875432 345677899999999999999
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|+||||||+|+.|||||+||||||++|+|++|+.++|.+||+.++++. ...++|+..||+.|+||||+||+++|++|
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA 426 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 426 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 56789999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCccc
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPER 189 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~~ 189 (235)
++.|+++++..++++||+.|++++..+.++
T Consensus 427 a~~Air~~~~~it~~Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 427 GMFAIRARRKVATEKDFLKAVDKVISGYKK 456 (467)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999887544
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-42 Score=309.09 Aligned_cols=184 Identities=33% Similarity=0.541 Sum_probs=173.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+|++|+.++++++.++|+|+++++++.+|..|+.++||||||||+|+++.+|...+ .+....+++++||.+||++...
T Consensus 239 ~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp HTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred hCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 47899999999999999999999999999999999999999999999999986543 3345678999999999999998
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|+||||||+|+.|||||+||||||++|+|++|+.++|.+||+.++.+. ...++|+..+|+.|+||||+||+++|++|
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 56789999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
++.|++++...|+.+||..|++++.++
T Consensus 399 ~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 399 GFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999765
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-42 Score=309.86 Aligned_cols=184 Identities=35% Similarity=0.549 Sum_probs=172.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCC--CccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+|+||+.++++++.++|+|+++++++.+|..|+.++||||||||+|+++.+|..... .....+++++||++||++..+
T Consensus 239 ~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 239 TNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp HTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred hCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 478999999999999999999999999999999999999999999999999865432 335677899999999999998
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|+||||||+|+.||||++||||||++|+|++|+.++|.+||+.++++. ...++|+..||+.|+||||+||+++|++|
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA 398 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEA 398 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 56789999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
++.|++++...|+.+||..|++++.++
T Consensus 399 ~~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 399 GMIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 999999999999999999999999775
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=302.93 Aligned_cols=183 Identities=34% Similarity=0.534 Sum_probs=171.3
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+|++|+.++++++.++|+|+++++|+.+|..|+..+||||||||+|+++.+|.... .+....+++++||++||++...
T Consensus 230 ~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 230 TKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp HTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred hCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 47899999999999999999999999999999999999999999999999986433 3446788999999999999988
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcC-CCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVP-PPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~-~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.+|+||||||+|+.||||++||||||++|+|| +|+.++|..||+.++.+. ...++|++.+|+.|+||||+||+++|++
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 389 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999996 899999999999999887 5678999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 159 AALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
|++.|+++++..|+++||++|+.++..
T Consensus 390 A~~~a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 390 AGLRAVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhhC
Confidence 999999999999999999999988754
No 7
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.3e-40 Score=301.40 Aligned_cols=228 Identities=49% Similarity=0.747 Sum_probs=198.0
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+.||+.++++++.++|+|.++.+++.+|..|+..+||||||||+|.++.+++.. +.+....+++++|+..|+++..+.
T Consensus 74 ~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp TCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred CCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 689999999999999999999999999999999999999999999999887532 234456678999999999987778
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
+++||++||+++.+|++++||||||+.+.+++|+.++|.+|++.++.+. ...++++..+++.|+||+|+||.++|++|+
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999876 456788999999999999999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEecc
Q psy10044 161 LRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLSL 233 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
..|.+++...|+.+||..|++++.++.+++......+.+..++|||+|||+++|+++..+ ++++++|.|..
T Consensus 234 l~A~~~~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~--~~~~~~i~prg 304 (476)
T 2ce7_A 234 LLAAREGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGE--PVHRISIIPRG 304 (476)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCC--CCCEEECC---
T ss_pred HHHHHcCCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCcc--ccceeeeecCc
Confidence 999999989999999999999999987776666667778889999999999999999998 99999999964
No 8
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=3e-38 Score=288.98 Aligned_cols=228 Identities=47% Similarity=0.722 Sum_probs=207.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+.+|+.+++++|.++++|...++++.+|+.|+...|||+||||+|.++..+... .......+.+++++..|++...+
T Consensus 88 ~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 3679999999999999999999999999999998899999999999998876532 22345567899999999998888
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
..++++++||+|+.||++++||||||+.|++++|+.++|.+||+.++.+. ...++++..+|..|+||+|+||+++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999998776 45688899999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHhhhcCCCCCCccceEEEec
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITLNLS 232 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
+..|.+++...|+.+||..|++++.++.+++......++++.++|||+|||+++|++++.+ ++++++|.|.
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~--~v~~~~i~pr 318 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHAD--GVHKVTIVPR 318 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCC--CCCCEESCCS
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCC--eeeEEEeecC
Confidence 9999988888999999999999999987776666677778889999999999999999988 9999999985
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.7e-40 Score=314.80 Aligned_cols=185 Identities=36% Similarity=0.579 Sum_probs=131.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
++.||+.+++++++++|+|+++++|+++|+.|++.+||||||||+|+++.+|+.. .++...++++++||.+||++...
T Consensus 535 ~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp TTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred hCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999999999999999999999999999999998643 23446678999999999999998
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+|+||||||+|+.||||++||||||++|++++|+.++|.+||+.++++. ...++|+..||+.|+||||+||+++|++|
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHH
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 56789999999999999999999999999
Q ss_pred HHHHHHcC-------------------------CCCCcHHHHHHHHHHhhCCc
Q psy10044 160 ALRAAIDG-------------------------VPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 160 ~~~a~~~~-------------------------~~~i~~~~~~~al~~~~~~~ 187 (235)
++.|+++. .+.|+.+||++|++++.++.
T Consensus 695 ~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 695 CKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp HHHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred HHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 99988752 13689999999999998865
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.8e-37 Score=294.06 Aligned_cols=217 Identities=31% Similarity=0.458 Sum_probs=188.3
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.|++|+.|+++++.++|+|+++++++.+|+.|++++||||||||+|+|+++|+... +....+++++|+.+||++..+.+
T Consensus 262 lg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp TTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccccCC
Confidence 58999999999999999999999999999999999999999999999999887553 45668899999999999988889
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
|+||||||+++.|||||+||||||++|+++.|+.++|.+||+.++.+. ...++|+..+|..|+||+|+||.++|++|.+
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~ 420 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887 5688999999999999999999999999998
Q ss_pred HHHHcC-----------------CCCCcHHHHHHHHHHhhCCcccC--CCCCchhhhHHHHHHHHHHHHHHhhhcCCCCC
Q psy10044 162 RAAIDG-----------------VPHVTMKYLEYARDKVLMGPERK--SRLPDEETNMITAYHEGGHAVVAFFTKDSENH 222 (235)
Q Consensus 162 ~a~~~~-----------------~~~i~~~~~~~al~~~~~~~~~~--~~~~~~e~~~~~a~~e~gha~~~~~~~~~~~~ 222 (235)
.|.++. ...++.+||..|++.+.++..+. ...+...|.+++++.++... +.+..+|
T Consensus 421 ~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~-----l~e~v~~ 495 (806)
T 3cf2_A 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE-----LQELVQY 495 (806)
T ss_dssp HHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH-----HTTTTTT
T ss_pred HHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHH-----HHHHHHh
Confidence 887652 12478899999999998876432 34556677777666666444 4455556
Q ss_pred Ccc
Q psy10044 223 LTH 225 (235)
Q Consensus 223 ~~~ 225 (235)
|+.
T Consensus 496 p~~ 498 (806)
T 3cf2_A 496 PVE 498 (806)
T ss_dssp TTT
T ss_pred hhh
Confidence 654
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=227.66 Aligned_cols=184 Identities=34% Similarity=0.528 Sum_probs=158.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.+.+++.++++++.++|.|+++++++.+|+.|+...||++|+||+|.++..++... .....+++++++.+|++...+..
T Consensus 68 ~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 68 SGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp TTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCSTTC
T ss_pred cCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc-chHHHHHHHHHHHhhhcccccCC
Confidence 46789999999999999999999999999999999999999999999987664321 22234678999999999988889
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc----cCCCCCHHHHHhcCC--CCCHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI----VSKNIDVDTLARGTT--GFTGADLENMV 156 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~----~~~~~~l~~la~~t~--G~s~~di~~l~ 156 (235)
++++|+||+|+.||++++||||||+.|++++|+.++|.+||+.++... ...++++..+|..|. ||||+||.++|
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999998542 356899999999854 99999999999
Q ss_pred HHHHHHHHHc-----------CCCCCcHHHHHHHHHHhhCCc
Q psy10044 157 NQAALRAAID-----------GVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 157 ~~A~~~a~~~-----------~~~~i~~~~~~~al~~~~~~~ 187 (235)
++|+..|+++ +...|+.+||+.|++++.++.
T Consensus 227 ~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 227 REASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp HHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCC
Confidence 9999988864 234699999999999998764
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=5e-30 Score=221.12 Aligned_cols=184 Identities=36% Similarity=0.596 Sum_probs=162.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+.+|+.++++++.++|+|++++.++.+|+.|+...|+||||||+|.++..++... ......+++++|+..++++...
T Consensus 73 ~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 73 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp TTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 46899999999999999999999999999999999999999999999998775321 1234467889999999998877
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.+++||+|||+++.+|++++|||||+..+++++|+.++|.+|++.++.+. ...++++..++..|.||||+||.++|++|
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999876 45678999999999999999999999999
Q ss_pred HHHHHHcC-------------------------CCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDG-------------------------VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~-------------------------~~~i~~~~~~~al~~~~~~ 186 (235)
...|.++. ...++.+||+.|++++.++
T Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 233 CKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 88776431 1468999999999988554
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=4.2e-29 Score=210.08 Aligned_cols=184 Identities=50% Similarity=0.780 Sum_probs=167.3
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+.||+.++++++.+.+.|++++.++.+|+.|+...|+++||||+|.+...+... .........++.++..++++..+.
T Consensus 70 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp TCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred CCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 578999999999999999999999999999999999999999999999877532 223344578999999999988788
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
+++||+|||.++.+|++++|||||++.+++++|+.++|.+|++.++.+. ...+.++..++..++||+++||.++|++|.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999876 456788999999999999999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 161 LRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
..|..++...|+.+|+++|++.+..+.
T Consensus 230 ~~a~~~~~~~i~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 230 LFAARGNKRVVSMVEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCcccHHHHHHHHHHHhcCC
Confidence 999999999999999999999987764
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=217.99 Aligned_cols=180 Identities=28% Similarity=0.467 Sum_probs=161.6
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-CCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~~~ 82 (235)
+.+|+.++++++.++|.|++++.++.+|..|+..+|+||||||+|.++.+++.. ......+++++|+..++++. ...+
T Consensus 71 ~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 71 NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccccCCC
Confidence 789999999999999999999999999999999999999999999999887654 34557789999999999985 4678
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
++||+|||+|+.+|++++| ||+..+++++|+.++|.+|++.++.+. ...+.++..|++.|+||||+||.++|++|.
T Consensus 150 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp EEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999775 235678999999999999999999999999
Q ss_pred HHHHHcC-------------------------------------------------CCCCcHHHHHHHHHHhhCC
Q psy10044 161 LRAAIDG-------------------------------------------------VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 161 ~~a~~~~-------------------------------------------------~~~i~~~~~~~al~~~~~~ 186 (235)
+.|+++. ...|+.+||+.|+..+.++
T Consensus 228 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps 302 (322)
T 1xwi_A 228 MQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPT 302 (322)
T ss_dssp THHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCC
Confidence 8887641 1369999999999988665
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=5.3e-29 Score=227.84 Aligned_cols=202 Identities=33% Similarity=0.491 Sum_probs=169.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
++.+|+.++|+++.+.|.|+++..++.+|+.|....|++|||||+|.++.+++... .....++.+.|+..|++.....+
T Consensus 262 ~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp CSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHHHHHHSCTTSC
T ss_pred hCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc-chHHHHHHHHHHHHhhccccCCc
Confidence 47899999999999999999999999999999999999999999999999876442 34557889999999999888889
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
++||+|||+++.||++++|+|||+..+++++|+.++|.+||+.++... ...+.++..++..+.||+++||.++|++|..
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 4577889999999999999999999999999
Q ss_pred HHHHcCCC-----------------CCcHHHHHHHHHHhhCCcc--cCCCCCchhhhHHHHHH
Q psy10044 162 RAAIDGVP-----------------HVTMKYLEYARDKVLMGPE--RKSRLPDEETNMITAYH 205 (235)
Q Consensus 162 ~a~~~~~~-----------------~i~~~~~~~al~~~~~~~~--~~~~~~~~e~~~~~a~~ 205 (235)
.|.++... .++.+||+.|++++.++.. .....+...|.+++++.
T Consensus 421 ~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp HHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred HHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 99887533 4899999999999988763 33567778888887764
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.8e-28 Score=207.56 Aligned_cols=184 Identities=40% Similarity=0.642 Sum_probs=167.8
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC--CCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+.+|+.++++++.+.+.|+.+..++.+|..++...|+||||||+|.++.++.+.. ........+..++..++++...
T Consensus 75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 75 TNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp TTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred hCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 37899999999999999999999999999999999999999999999998776432 2334567888899999988878
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
.++++|+|||.++.+|++++|||||+..++++.|+.++|.+|++.++... ...+.++..++..+.|++++||..+|+.|
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999876 45678899999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
...|..++...|+.+|+.+|++++...
T Consensus 235 ~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 235 GMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998754
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=9.4e-29 Score=214.98 Aligned_cols=181 Identities=27% Similarity=0.451 Sum_probs=158.7
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-CCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~~~ 82 (235)
+.+|+.++++++.++|+|++++.++.+|..|+...|+||||||+|.+..+++.. ......++.++++..++++. ...+
T Consensus 76 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 76 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred CCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-cchHHHHHHHHHHHHhccccccCCc
Confidence 679999999999999999999999999999999999999999999999887543 34456789999999999884 5678
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
++||+|||.++.||++++| ||+..+++++|+.++|.+|++.++.+. ...+.++..+++.|+|||++||.++|++|.
T Consensus 155 v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp EEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHT
T ss_pred eEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999876 235668999999999999999999999998
Q ss_pred HHHHHcC-------------------------------------------CCCCcHHHHHHHHHHhhCCc
Q psy10044 161 LRAAIDG-------------------------------------------VPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 161 ~~a~~~~-------------------------------------------~~~i~~~~~~~al~~~~~~~ 187 (235)
..|+++. ...|+.+||.+|++.+.++.
T Consensus 233 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 233 MQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp THHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 8887642 14599999999999987653
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=5.6e-28 Score=212.96 Aligned_cols=180 Identities=26% Similarity=0.447 Sum_probs=153.9
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC-CCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ-NEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~-~~~ 82 (235)
+.+|+.++++++.+.|.|++++.++.+|..|+...|+||||||+|.+...++.. ......++.++|+..|+++.. ..+
T Consensus 109 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-cchHHHHHHHHHHHHhhcccccCCC
Confidence 679999999999999999999999999999999999999999999999887644 345567889999999998853 568
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
++||+|||+++.||++++| ||+..+++++|+.++|.+||+.++.... ..+.++..|++.|+||+|+||.++|++|.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999997762 35678999999999999999999999999
Q ss_pred HHHHHcC-------------------------------------------CCCCcHHHHHHHHHHhhCC
Q psy10044 161 LRAAIDG-------------------------------------------VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 161 ~~a~~~~-------------------------------------------~~~i~~~~~~~al~~~~~~ 186 (235)
+.|+++. ...|+.+||..|+..+.|+
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps 334 (355)
T 2qp9_X 266 MQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 334 (355)
T ss_dssp HHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCC
Confidence 9888641 2359999999999999775
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=206.73 Aligned_cols=189 Identities=46% Similarity=0.693 Sum_probs=148.3
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC---CCccHHHHHHHHHHHhcCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV---LHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~---~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
+.+|+.++++++.+.+.|.++..++.+|..|+...|+||||||+|.++.+++... .+......++.++..+++....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred CCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 6789999999999999999999999999999999999999999999988775321 1233456789999999988777
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc-CC--CCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV-SK--NIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~-~~--~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
.++++|+|||.++.+|++++|||||+..+++++|+.++|.+|++.++.... .. +..+..+++.+.||+++||.++|+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999987652 21 223578999999999999999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCC
Q psy10044 158 QAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSR 192 (235)
Q Consensus 158 ~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~ 192 (235)
+|...|.+++...|+.+|+..|++++.++..++.+
T Consensus 224 ~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~ 258 (262)
T 2qz4_A 224 EAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSK 258 (262)
T ss_dssp HHHTC--------CCBCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhccChhhhhH
Confidence 99999999888899999999999999887655444
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=4.7e-27 Score=197.19 Aligned_cols=177 Identities=50% Similarity=0.764 Sum_probs=156.8
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+.+++.+++.++.+.+.|...+.++.+|+.+....|+++++||+|.++..+... .........++.++..+++...+.
T Consensus 74 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 74 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred CCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 468999999999999999999999999999988889999999999998776431 123345678899999999988778
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
.++++++||.|+.+|++++|||||++.++++.|+.++|.+||+.++... ...++++..+++.|+||+++||+++|++|.
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~ 233 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 233 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998776 456788999999999999999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHH
Q psy10044 161 LRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al 180 (235)
..|.+++...|+.+|+++|+
T Consensus 234 ~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 234 LLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHhcCCCcCHHHHHHHh
Confidence 99999888899999999886
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=1.5e-27 Score=215.99 Aligned_cols=160 Identities=30% Similarity=0.528 Sum_probs=136.8
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-CCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~~~ 82 (235)
+.+|+.++++++.+.|+|++++.++.+|..|+..+|+||||||+|.++.++... ......+++++|+..|+++. ...+
T Consensus 193 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 193 NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp SSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCcccCCCC
Confidence 789999999999999999999999999999999999999999999999887654 34557889999999999985 3578
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
++||+|||+++.||++++| ||+..+++++|+.++|..||+.++... ...+.++..|++.|+||||+||.++|++|+
T Consensus 272 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDAL 349 (444)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999765 236678999999999999999999999999
Q ss_pred HHHHHc
Q psy10044 161 LRAAID 166 (235)
Q Consensus 161 ~~a~~~ 166 (235)
+.|+++
T Consensus 350 ~~a~r~ 355 (444)
T 2zan_A 350 MQPVRK 355 (444)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 888764
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=8.5e-26 Score=192.22 Aligned_cols=177 Identities=50% Similarity=0.764 Sum_probs=156.7
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC--CCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+.+++.+++.++.+.+.+...+.++.+|+.+....|+++++||+|.++..+... .........++.++.++++...+.
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 98 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp TCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 468999999999999999999999999999998889999999999998765421 123345678899999999987778
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
.++++++||.|+.||++++|||||++.+++++|+.++|.+||+.++... ...++++..++..++|++++||+++|++|.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 257 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998776 456788999999999999999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHH
Q psy10044 161 LRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 161 ~~a~~~~~~~i~~~~~~~al 180 (235)
..|.+++...|+.+|+++|+
T Consensus 258 ~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 258 LLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHhCCCCcCHHHHHHHh
Confidence 99999888899999999886
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=5.2e-29 Score=240.02 Aligned_cols=183 Identities=36% Similarity=0.599 Sum_probs=153.3
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCC--CccHHHHHHHHHHHhcCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+.+|+.++++++.++|+|+++++++.+|+.|+...||||||||+|.++..++.... +....+++++||..|+++....
T Consensus 536 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 536 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp TCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred CCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 67899999999999999999999999999999999999999999999998865422 2356789999999999998888
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
+++||+|||+++.||+|++|||||+..|++++|+.++|.+||+.++.+. ...++++..+++.|.|||++||.++|++|.
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~ 695 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 557889999999999999999999999999
Q ss_pred HHHHHcCC-------------------------CCCcHHHHHHHHHHhhCC
Q psy10044 161 LRAAIDGV-------------------------PHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 161 ~~a~~~~~-------------------------~~i~~~~~~~al~~~~~~ 186 (235)
..|.++.- +.|+.++|++|++...++
T Consensus 696 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 746 (806)
T 1ypw_A 696 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp HHHHSCC------------------------CCTTTTTTSSCCCCCC----
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCC
Confidence 99987641 247777777776655443
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.3e-25 Score=195.32 Aligned_cols=182 Identities=26% Similarity=0.431 Sum_probs=156.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC--CC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH--QN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--~~ 80 (235)
++.+|+.++++++.+.|.|++++.++.+|..|+...|+||||||+|.++..++.. ......+++++|+..+++.. ..
T Consensus 141 ~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 141 SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG-EHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp TTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CC
T ss_pred cCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC-cchHHHHHHHHHHHHHhcccccCC
Confidence 4789999999999999999999999999999999999999999999999877543 24456788999999999874 34
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.+++||+|||.++.+|++++| ||+..+++++|+.++|.++++.++... ...+.++..+++.+.||+++||..+|++
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 679999999999999999999 999999999999999999999998654 2345568899999999999999999999
Q ss_pred HHHHHHHc------------CCCCCcHHHHHHHHHHhhCCc
Q psy10044 159 AALRAAID------------GVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 159 A~~~a~~~------------~~~~i~~~~~~~al~~~~~~~ 187 (235)
|...++++ ....|+.+||..|+.++.++.
T Consensus 298 a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 298 ASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 99888874 235799999999999997753
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=8.4e-28 Score=203.01 Aligned_cols=184 Identities=44% Similarity=0.679 Sum_probs=157.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCC---CCccHHHHHHHHHHHhcCCCC-
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV---LHPYANQTINQLLAEMDGFHQ- 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~---~~~~~~~~~~~ll~~ld~~~~- 79 (235)
+.||+.++++++.+.+.|.++..++.+|+.|+...|+||||||+|.+..++...+ .+......++.++..+++...
T Consensus 69 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp TCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred CCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 5789999999999999999999999999999999999999999999988763211 122233456788888887753
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
..+++||+|||.++.+|++++|+|||+..+++++|+.++|.++++.++... ...+.++..+++.+.||+|+||.++|++
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999876 4467789999999999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 159 AALRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 159 A~~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
|...|..++...|+.+++..|++++.+..
T Consensus 229 a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 229 AALLAGRNNQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp HHHTTSSSCCCSCCHHHHHTSCTTCCCCC
T ss_pred HHHHHHHhccCCcCHHHHHHHHHHHhhcc
Confidence 99999888888999999999998887654
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=5.3e-26 Score=195.35 Aligned_cols=146 Identities=16% Similarity=0.256 Sum_probs=113.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHH----hhCCCeEEEEccccccccccCCCCC-CccHHHHHHHHHHHhcCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVL-HPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A----~~~~P~Il~iDeiD~l~~~r~~~~~-~~~~~~~~~~ll~~ld~~~ 78 (235)
|.+|+.++++++.+.|+|+++..++.+|..| +..+||||||||+|++++++++... ......+.+.|+..+|+..
T Consensus 61 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 140 (293)
T 3t15_A 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 140 (293)
T ss_dssp TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccc
Confidence 7899999999999999999999999999999 6778999999999999986653322 2234567788999988543
Q ss_pred -----------CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCC
Q psy10044 79 -----------QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGF 147 (235)
Q Consensus 79 -----------~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~ 147 (235)
...+++||+|||+++.||++++|||||+..|+ .|+.++|.+|++.++.. .++++..+++.+.||
T Consensus 141 ~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~---~~~~~~~l~~~~~~~ 215 (293)
T 3t15_A 141 NVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT---DNVPAEDVVKIVDNF 215 (293)
T ss_dssp -----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG---GCCCHHHHHHHHHHS
T ss_pred ccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC---CCCCHHHHHHHhCCC
Confidence 45679999999999999999999999999897 57999999999988754 467899999999999
Q ss_pred CHHHHHH
Q psy10044 148 TGADLEN 154 (235)
Q Consensus 148 s~~di~~ 154 (235)
++++|..
T Consensus 216 ~~~~l~~ 222 (293)
T 3t15_A 216 PGQSIDF 222 (293)
T ss_dssp CSCCHHH
T ss_pred CcccHHH
Confidence 9999964
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=1e-24 Score=186.69 Aligned_cols=181 Identities=31% Similarity=0.463 Sum_probs=154.4
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC--
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN-- 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-- 80 (235)
.+.+|+.++++++.+.+.|+++..++.+|..++...|+||||||+|.++..++... ......+.+.|+..+++....
T Consensus 78 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 78 CSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp TTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC----
T ss_pred hCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-chHHHHHHHHHHHHHhcccccCC
Confidence 46899999999999999999999999999999999999999999999998875432 334567888999999887543
Q ss_pred -CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 81 -EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 81 -~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
.++++|++||+++.+|++++| ||+..+++++|+.++|..|++.++... ...+.++..+++.+.||+++||..+|+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 579999999999999999999 999999999999999999999998764 234456888999999999999999999
Q ss_pred HHHHHHHHcC------------CCCCcHHHHHHHHHHhhCC
Q psy10044 158 QAALRAAIDG------------VPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 158 ~A~~~a~~~~------------~~~i~~~~~~~al~~~~~~ 186 (235)
+|...+.++. ...|+.+||..|+.++.++
T Consensus 235 ~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 235 DAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp HHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred HHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 9998888764 2579999999999887554
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=8.4e-24 Score=188.17 Aligned_cols=181 Identities=29% Similarity=0.469 Sum_probs=146.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC--C
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--N 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~--~ 80 (235)
.+.+|+.++++++.+.|.|+++..++.+|..|+...|+||||||+|.++..+... ......++.+.|+..++++.. .
T Consensus 172 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 172 SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp TTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC----
T ss_pred hcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc-cchHHHHHHHHHHHHhhcccccCC
Confidence 4789999999999999999999999999999999999999999999998877543 244567888999999998754 4
Q ss_pred CCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q psy10044 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 81 ~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~ 158 (235)
.+++||+|||.++.||++++| ||+..++++.|+.++|.+|++.++... ...+.++..+++.+.||++++|..+|+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 679999999999999999999 999999999999999999999998764 2344568899999999999999999999
Q ss_pred HHHHHHHc------------CCCCCcHHHHHHHHHHhhCC
Q psy10044 159 AALRAAID------------GVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 159 A~~~a~~~------------~~~~i~~~~~~~al~~~~~~ 186 (235)
|...+.++ ....|+.+||..++.++.++
T Consensus 329 a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 329 AALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 99888876 34579999999999887554
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=3e-21 Score=186.02 Aligned_cols=184 Identities=35% Similarity=0.538 Sum_probs=163.1
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.+.+|+.++++++.+.+.|+.+.+++.+|+.+....|+++|+||+|.++.+++... .....++++.++..++++....+
T Consensus 262 l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp TTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC-SHHHHHHHHHHHHHHHSSCTTSC
T ss_pred cCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc-chHHHHHHHHHHHHhhhhccccc
Confidence 47889999999999999999999999999999999999999999999998875432 34457788999999999988889
Q ss_pred eEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 83 v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
+++|+|||+++.+|+++.|+|||++.+.++.|+.++|.+|++.++.+. ...+.++..++..+.||+++|+..+|++|..
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~ 420 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876 4577889999999999999999999999998
Q ss_pred HHHHcCC-----------------CCCcHHHHHHHHHHhhCCc
Q psy10044 162 RAAIDGV-----------------PHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 162 ~a~~~~~-----------------~~i~~~~~~~al~~~~~~~ 187 (235)
.+.++.. ..++.+++..++....+..
T Consensus 421 ~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred HHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchh
Confidence 8776532 2467778888888776653
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.70 E-value=4.7e-20 Score=167.31 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=98.5
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHH---hhCCCeEEEEccccccccccCCCCCCcc---H---------------
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAA---KDRTPCVVFIDEIDSVGAKRTNSVLHPY---A--------------- 63 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A---~~~~P~Il~iDeiD~l~~~r~~~~~~~~---~--------------- 63 (235)
++|+.++++++.++|+|++++ ++++|..| +..+||||||||+|+++.+|+....+.. .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 169 (456)
T 2c9o_A 91 VPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQ 169 (456)
T ss_dssp SCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEE
T ss_pred ceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchh
Confidence 899999999999999999998 99999999 8889999999999999998865421110 0
Q ss_pred HHHHHHHHHHhc--CCCCCCCeEEEEecCCCCcccHHhhCCCcccE--EEEcCCC--CHHHHHHHHHHHhcCccCCCCCH
Q psy10044 64 NQTINQLLAEMD--GFHQNEGVVVLGATNRRDDLDKALLRPGRFDI--EVNVPPP--DYTGRREILDLYLGKIVSKNIDV 137 (235)
Q Consensus 64 ~~~~~~ll~~ld--~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~--~i~i~~P--~~~~R~~il~~~l~~~~~~~~~l 137 (235)
.++.+.++..++ ++..+..++|++|||+++.+|+++.||||||+ .+.++.| +.++|.+|++.+.. .|+
T Consensus 170 ~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------~dl 243 (456)
T 2c9o_A 170 LKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------HDL 243 (456)
T ss_dssp EEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH------HHH
T ss_pred HhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH------HHH
Confidence 122344666665 44444557777999999999999999999998 5666777 55888888775542 268
Q ss_pred HHHHhcCCCCCHHHHHHHHHH
Q psy10044 138 DTLARGTTGFTGADLENMVNQ 158 (235)
Q Consensus 138 ~~la~~t~G~s~~di~~l~~~ 158 (235)
+.++..|+| |+||.++|+.
T Consensus 244 ~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 244 DVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHTC-----------------
T ss_pred HHHHHhCCC--hhHHHHHHhh
Confidence 999999999 9999999965
No 31
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=106.88 Aligned_cols=74 Identities=28% Similarity=0.465 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 112 PPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 112 ~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
|+|+.++|.+||+.++++. ...++|+..||+.|+||||+||.++|++|++.|++++...|+.+||..|++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999987 4578999999999999999999999999999999999999999999999999864
No 32
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=109.01 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=71.1
Q ss_pred cCCCCHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 111 VPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 111 i~~P~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
-.+||.++|.+||+.++++. ...++|+..||+.|+||||+||+++|++|++.|++++...|+++||+.|++++.++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 36899999999999999987 45789999999999999999999999999999999999999999999999999774
No 33
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.61 E-value=2e-15 Score=106.72 Aligned_cols=81 Identities=26% Similarity=0.280 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCC
Q psy10044 115 DYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRL 193 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~ 193 (235)
|.++|.+||+.++++. ...++|+..||+.|+||||+||.++|++|++.|++++...|+++||+.|++++.++..++...
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccch
Confidence 6789999999999887 457899999999999999999999999999999999999999999999999999987665544
Q ss_pred Cc
Q psy10044 194 PD 195 (235)
Q Consensus 194 ~~ 195 (235)
..
T Consensus 82 ~~ 83 (88)
T 3vlf_B 82 SR 83 (88)
T ss_dssp --
T ss_pred hH
Confidence 33
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.55 E-value=1.8e-14 Score=123.33 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=123.3
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
.+.+++.++++++.+.+.|.++..++.+|..+ .++||||||+|.++..++. +.......+.|+..++. ...+
T Consensus 98 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~---~~~~~~~~~~Ll~~l~~--~~~~ 169 (309)
T 3syl_A 98 RKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMEN--NRDD 169 (309)
T ss_dssp SSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHH--CTTT
T ss_pred CCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc---ccccHHHHHHHHHHHhc--CCCC
Confidence 35689999999999999999999999999988 4689999999999876543 22345678888888884 3457
Q ss_pred eEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhc------CCC-CC
Q psy10044 83 VVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARG------TTG-FT 148 (235)
Q Consensus 83 v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~------t~G-~s 148 (235)
+++|++||.++ .++|+|++ ||+..++|++|+.+++..|++.++... ..++..+..+++. +.. -.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn 247 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFAN 247 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCc
Confidence 89999998654 36899999 999999999999999999999998754 1222234445543 122 34
Q ss_pred HHHHHHHHHHHHHHHHHc----CCCCCcHHHHH
Q psy10044 149 GADLENMVNQAALRAAID----GVPHVTMKYLE 177 (235)
Q Consensus 149 ~~di~~l~~~A~~~a~~~----~~~~i~~~~~~ 177 (235)
++++.++++.|...+..+ ....++.+++.
T Consensus 248 ~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 248 ARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 899999999988655443 33556666654
No 35
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.52 E-value=3.5e-14 Score=99.11 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 115 DYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
|.++|.+||+.++++. ...++|+..||+.|+||||+||.++|++|++.|++++...|+++||..|++++.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 6899999999999887 457899999999999999999999999999999999999999999999999998764
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.48 E-value=7.6e-14 Score=122.16 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhh---------CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEec-----
Q psy10044 24 ARRVRDLFKAAKD---------RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGAT----- 89 (235)
Q Consensus 24 ~~~i~~~F~~A~~---------~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatT----- 89 (235)
...++..|..+.. ..|+||||||+|.+.. ...+.|+..++.. ..+++++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~------------~~~~~L~~~le~~--~~~~~ii~t~~~~~~ 231 (368)
T 3uk6_A 166 KSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI------------ESFSFLNRALESD--MAPVLIMATNRGITR 231 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH------------HHHHHHHHHTTCT--TCCEEEEEESCSEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh------------HHHHHHHHHhhCc--CCCeeeeecccceee
Confidence 4455666655533 1278999999999842 3456677777643 3345555554
Q ss_pred ------CCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 90 ------NRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 90 ------n~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
|.+..+++++++ ||.. +.|++|+.+++.++++..+... ..++..+..+++.+.|.+++++.++|+.|..
T Consensus 232 i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 232 IRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp CBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred eeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 357889999999 9976 8999999999999999887643 2233347778888887899999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 162 RAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 162 ~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
.|..++...|+.+++.+|++.+.
T Consensus 309 ~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 309 VCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHSB
T ss_pred HHHHhCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998754
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.46 E-value=4.9e-14 Score=130.37 Aligned_cols=172 Identities=18% Similarity=0.137 Sum_probs=110.0
Q ss_pred CCeeEEeccchhhh---------hhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHh
Q psy10044 4 HPDTNHAQGPEFDE---------VLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 74 (235)
Q Consensus 4 ~~~~~~v~~s~l~~---------~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~l 74 (235)
+.+|+.++++.+.. .|+|.....+...|..|....| |+||||+|.+..++... ..+.|+..|
T Consensus 133 ~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~--------~~~~LL~~l 203 (543)
T 3m6a_A 133 GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGD--------PSSAMLEVL 203 (543)
T ss_dssp TCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGT
T ss_pred CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccC--------HHHHHHHHH
Confidence 56888888877554 6888888999999999987776 99999999998764321 345567777
Q ss_pred cCCCC-------------CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-------cC--
Q psy10044 75 DGFHQ-------------NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-------VS-- 132 (235)
Q Consensus 75 d~~~~-------------~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-------~~-- 132 (235)
+.... ..++++|+|||.++.+||+|++ ||+ .|+++.|+.++|..|++.++-.. ..
T Consensus 204 d~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~ 280 (543)
T 3m6a_A 204 DPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSN 280 (543)
T ss_dssp CTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGG
T ss_pred hhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 64321 1568999999999999999999 996 79999999999999999987221 11
Q ss_pred ---CCCCHHHHHhcCCC-CCH----HHHHHHHHHHHHHHHHc--CCCCCcHHHHHHHHHHhhCCc
Q psy10044 133 ---KNIDVDTLARGTTG-FTG----ADLENMVNQAALRAAID--GVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 133 ---~~~~l~~la~~t~G-~s~----~di~~l~~~A~~~a~~~--~~~~i~~~~~~~al~~~~~~~ 187 (235)
++..+..+++...+ ... +.|+++|+.|...+... +...|+.+++.+++....+..
T Consensus 281 i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~ 345 (543)
T 3m6a_A 281 LQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRY 345 (543)
T ss_dssp CEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCC
T ss_pred ccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcccCc
Confidence 11124455553332 333 44555555555555544 334689999999987655443
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.44 E-value=2.1e-13 Score=115.01 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=118.0
Q ss_pred CCeeEEeccchhh-hhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-CCC
Q psy10044 4 HPDTNHAQGPEFD-EVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNE 81 (235)
Q Consensus 4 ~~~~~~v~~s~l~-~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~~ 81 (235)
+.+|+.+++++.. ....+.....++.+|+.+....|++|||||+|.+++.+... ......+++.|...+++.. ...
T Consensus 89 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~l~~L~~~~~~~~~~~~ 166 (272)
T 1d2n_A 89 NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLLKKAPPQGR 166 (272)
T ss_dssp TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TBCCHHHHHHHHHHTTCCCSTTC
T ss_pred CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hhHHHHHHHHHHHHhcCccCCCC
Confidence 6789999886522 22223445789999999988889999999999998765432 2234667777878787664 345
Q ss_pred CeEEEEecCCCCcccH-HhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCC----CHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDK-ALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGF----TGADLENMV 156 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~-al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~----s~~di~~l~ 156 (235)
++++|+|||.++.+|+ .+.+ ||+..+++|+++. |.+|.+.+.......+.++..+++.+.|| ..+++.+++
T Consensus 167 ~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCSCHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred CEEEEEecCChhhcchhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCCCHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 7889999999999998 5666 9999998876654 34444433322223445588899999998 566666666
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
+.|... ......+++..+++....
T Consensus 243 ~~a~~~-----~~~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 243 EMSLQM-----DPEYRVRKFLALLREEGA 266 (272)
T ss_dssp HHHTTS-----CGGGHHHHHHHHHHHTSC
T ss_pred HHHhhh-----chHHHHHHHHHHHHHcCC
Confidence 655432 233566777777766643
No 39
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.43 E-value=9.1e-14 Score=96.86 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCc-cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 117 TGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 117 ~~R~~il~~~l~~~-~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
++|.+||+.++++. ...++|+..||+.|+||||+||.++|++|++.|++++...|+.+||..|++++..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 47999999999887 457899999999999999999999999999999999999999999999999996553
No 40
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.38 E-value=1.2e-12 Score=111.50 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=125.6
Q ss_pred CCeeEEeccchhhh-hhccHH-HHHHHHHHHHH-----hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC
Q psy10044 4 HPDTNHAQGPEFDE-VLVGQG-ARRVRDLFKAA-----KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 76 (235)
Q Consensus 4 ~~~~~~v~~s~l~~-~~~g~~-~~~i~~~F~~A-----~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~ 76 (235)
+.+++.++++++.+ .|+|.. ...++.+|..+ +...++||||||+|.+...............+.+.|+..+++
T Consensus 75 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 75 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 57899999999876 566643 45677777643 122478999999999988765433232333456788888876
Q ss_pred CC--------CCCCeEEEEe----cCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHH----Hh---------cCc-
Q psy10044 77 FH--------QNEGVVVLGA----TNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDL----YL---------GKI- 130 (235)
Q Consensus 77 ~~--------~~~~v~vIat----Tn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~----~l---------~~~- 130 (235)
.. ...++++|++ ++.+..+++++++ ||+..++|++|+.+++.+|++. ++ .+.
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 232 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVN 232 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCE
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCe
Confidence 41 2346888888 5688999999999 9999999999999999999983 21 111
Q ss_pred -cCCCCCHHHHHhcC-------CCCCHHHHHHHHHHHHHHHHHc-----CCC-CCcHHHHHHHHHHhh
Q psy10044 131 -VSKNIDVDTLARGT-------TGFTGADLENMVNQAALRAAID-----GVP-HVTMKYLEYARDKVL 184 (235)
Q Consensus 131 -~~~~~~l~~la~~t-------~G~s~~di~~l~~~A~~~a~~~-----~~~-~i~~~~~~~al~~~~ 184 (235)
..++..++.+++.+ .+...+++.++++.+...+..+ +.. .|+.+++..++....
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 11222355666655 3678999999999876544322 222 499999999887653
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.35 E-value=8.8e-14 Score=125.19 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=36.6
Q ss_pred CCCeeEEeccchhhh-hhccH-HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFDE-VLVGQ-GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~~-~~~g~-~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+.+|+.++++.+.+ .|+|+ .++.++.+|+.|.... ++||+|.+..... +....+++++|+..||++...
T Consensus 74 l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~~~----~~~e~rvl~~LL~~~dg~~~~ 145 (444)
T 1g41_A 74 ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRARAE----DVAEERILDALLPPAKNQWGE 145 (444)
T ss_dssp TTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC-----------------------------
T ss_pred cCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhccch----hhHHHHHHHHHHHHhhccccc
Confidence 478999999999999 59995 8999999999998754 4899988764332 334578999999999999766
Q ss_pred CCeEEEEe-cCCCCcccHHhhCCCcccEEEEcCCCCHH-HHHHHH
Q psy10044 81 EGVVVLGA-TNRRDDLDKALLRPGRFDIEVNVPPPDYT-GRREIL 123 (235)
Q Consensus 81 ~~v~vIat-Tn~~~~ld~al~rpgRf~~~i~i~~P~~~-~R~~il 123 (235)
..+ +++ ||+++.||+||+||||||+.|++++|+.. .|.+|+
T Consensus 146 ~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 146 VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------------------------
T ss_pred ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 555 455 99999999999999999999999999988 788876
No 42
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.32 E-value=1.4e-11 Score=117.97 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=127.5
Q ss_pred CCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCC
Q psy10044 3 THPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80 (235)
Q Consensus 3 s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 80 (235)
.+..++.++.+.+. .+|.|+.+.+++.+|+.++...++||||||+|.+.+.++.... ..... ..+..+-..
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~---~~~~~----~~L~~~l~~ 313 (758)
T 1r6b_X 241 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---QVDAA----NLIKPLLSS 313 (758)
T ss_dssp TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC---HHHHH----HHHSSCSSS
T ss_pred cCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc---hHHHH----HHHHHHHhC
Confidence 46788999988887 4689999999999999999888999999999999876543221 12222 233333345
Q ss_pred CCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc------cCCCCCHHHHHhc-----C
Q psy10044 81 EGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI------VSKNIDVDTLARG-----T 144 (235)
Q Consensus 81 ~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~------~~~~~~l~~la~~-----t 144 (235)
.++.+|++||.++ .+|++|.| ||+ .+.++.|+.++|.+|++.+...+ ...+..+..++.. +
T Consensus 314 ~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN 390 (758)
T ss_dssp CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcc
Confidence 6789999998753 58999999 998 79999999999999999887542 1122224455544 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHHHhhC
Q psy10044 145 TGFTGADLENMVNQAALRAAI----DGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 145 ~G~s~~di~~l~~~A~~~a~~----~~~~~i~~~~~~~al~~~~~ 185 (235)
..+.+..+..++++|...+.. .+...++.+++..++.+...
T Consensus 391 ~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred cccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 456788999999998766655 24567999999999988754
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.28 E-value=8.4e-11 Score=101.72 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=119.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC----
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH---- 78 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~---- 78 (235)
.+.+|+.++++.+.. ...+...+.. ...+++|||||+|.+.. ...+.|+..++...
T Consensus 79 ~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~~------------~~~~~Ll~~l~~~~~~~~ 138 (338)
T 3pfi_A 79 MSANIKTTAAPMIEK------SGDLAAILTN--LSEGDILFIDEIHRLSP------------AIEEVLYPAMEDYRLDII 138 (338)
T ss_dssp TTCCEEEEEGGGCCS------HHHHHHHHHT--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCC---
T ss_pred hCCCeEEecchhccc------hhHHHHHHHh--ccCCCEEEEechhhcCH------------HHHHHHHHHHHhccchhh
Confidence 367889999876532 2334444433 24579999999999852 23455555555321
Q ss_pred ------------CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCcc--CCCCCHHHHHhcC
Q psy10044 79 ------------QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV--SKNIDVDTLARGT 144 (235)
Q Consensus 79 ------------~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~l~~la~~t 144 (235)
...++.+|++||....++++|++ ||+..+++++|+.+++..+++.++.... .++..+..+++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~ 216 (338)
T 3pfi_A 139 IGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS 216 (338)
T ss_dssp ------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT
T ss_pred cccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 01248999999999999999999 9999999999999999999998886541 2333467778855
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 145 TGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 145 ~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
.| .++++.++++.+...+...+...|+.+++..++.....
T Consensus 217 ~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 217 RS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred Cc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 54 67899999999988888888888999999999887643
No 44
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.28 E-value=5.7e-11 Score=103.76 Aligned_cols=171 Identities=16% Similarity=0.102 Sum_probs=122.0
Q ss_pred CCeeEEeccchhhhhh----------------ccH-HHHHHHHHHHHHhhC-CCeEEEEccccccccccCCCCCCccHHH
Q psy10044 4 HPDTNHAQGPEFDEVL----------------VGQ-GARRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRTNSVLHPYANQ 65 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~----------------~g~-~~~~i~~~F~~A~~~-~P~Il~iDeiD~l~~~r~~~~~~~~~~~ 65 (235)
+.+++.++|....+.+ .|. ....++.+++.+... .|++|+|||+|.+...+ ....
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~ 150 (387)
T 2v1u_A 78 LVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQD 150 (387)
T ss_dssp CEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHH
T ss_pred CeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCCh
Confidence 6788889887533211 122 223355666655444 48999999999996532 1234
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCC---CcccHHhhCCCcccE-EEEcCCCCHHHHHHHHHHHhcC----ccCCCCCH
Q psy10044 66 TINQLLAEMDGFHQNEGVVVLGATNRR---DDLDKALLRPGRFDI-EVNVPPPDYTGRREILDLYLGK----IVSKNIDV 137 (235)
Q Consensus 66 ~~~~ll~~ld~~~~~~~v~vIatTn~~---~~ld~al~rpgRf~~-~i~i~~P~~~~R~~il~~~l~~----~~~~~~~l 137 (235)
.+..++..++....+.++.+|++||.+ +.+++++.+ ||.. .+.+++|+.+++.++++..+.. ...++..+
T Consensus 151 ~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 228 (387)
T 2v1u_A 151 LLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVV 228 (387)
T ss_dssp HHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHH
T ss_pred HHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 666777766654325678999999988 789999999 9975 8999999999999999988753 12233336
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 138 DTLARGTT---GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 138 ~~la~~t~---G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
..+++.+. | .++.+.++++.|...|..++...|+.+++..|+....
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 66777665 4 5778889999999888888888999999999988774
No 45
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.28 E-value=2.2e-11 Score=109.89 Aligned_cols=167 Identities=14% Similarity=0.185 Sum_probs=120.5
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
+.++++++++++...+.+.........|.......|.||||||+|.+..++. ....|+..++.+...+..
T Consensus 160 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~----------~q~~l~~~l~~l~~~~~~ 229 (440)
T 2z4s_A 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG----------VQTELFHTFNELHDSGKQ 229 (440)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH----------HHHHHHHHHHHHHTTTCE
T ss_pred CCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH----------HHHHHHHHHHHHHHCCCe
Confidence 6789999999987766555443333344444444789999999999875321 122333333332234455
Q ss_pred EEEEecCCCCc---ccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 84 VVLGATNRRDD---LDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 84 ~vIatTn~~~~---ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
++|++.+.+.. +++++++ ||+ ..+.+++|+.++|..|++..+... ..++..+..++..+.| +++++.+++
T Consensus 230 iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L 306 (440)
T 2z4s_A 230 IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAI 306 (440)
T ss_dssp EEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 66666555665 8999999 996 789999999999999999988542 2233347888888875 899999999
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
+.+...|...+. .||.+++.+++....
T Consensus 307 ~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 307 IKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 999888877665 599999999998775
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.19 E-value=3e-10 Score=97.35 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=114.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-----
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH----- 78 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----- 78 (235)
+.+|+.++++.+.. ...+...|..+ ...+++|||||+|.+... ..+.++..++...
T Consensus 63 ~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~------------~~~~L~~~l~~~~~~~v~ 123 (324)
T 1hqc_A 63 GVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQ------------AEEHLYPAMEDFVMDIVI 123 (324)
T ss_dssp TCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH------------HHHHHHHHHHHSEEEECC
T ss_pred CCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccccc------------hHHHHHHHHHhhhhHHhc
Confidence 56788888876632 22333333321 145799999999998532 2233343333211
Q ss_pred -----------CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCC
Q psy10044 79 -----------QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTT 145 (235)
Q Consensus 79 -----------~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~ 145 (235)
...++.+|++||.+..+++++.+ ||+..+.+++|+.+++..+++.++... ..++..+..++..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 201 (324)
T 1hqc_A 124 GQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR 201 (324)
T ss_dssp SSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSC
T ss_pred cccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc
Confidence 11358899999999999999999 999899999999999999999988654 222334677888886
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 146 GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 146 G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
| .++++.++++.+...+...+...++.+++..++....
T Consensus 202 G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 202 G-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp S-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 5 5689999999887777666777899999999887763
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.14 E-value=1.6e-10 Score=101.31 Aligned_cols=176 Identities=15% Similarity=0.215 Sum_probs=121.4
Q ss_pred CCCeeEEeccchhhhh-hccHH-HHHHHHHHHHH----hhCCCeEEEEccccccccccCCCCCCc--cHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFDEV-LVGQG-ARRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~-~~g~~-~~~i~~~F~~A----~~~~P~Il~iDeiD~l~~~r~~~~~~~--~~~~~~~~ll~~l 74 (235)
++.||+.++++++... |+|.. ...++.+|..+ ....|+||||||+|.+...+++..... ....+.+.||..|
T Consensus 75 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 75 LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI 154 (363)
T ss_dssp TTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHH
T ss_pred cCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHh
Confidence 4789999999999854 88886 67788888877 445689999999999998765443221 2234889999999
Q ss_pred cCCC-------------------CCCCeEEEEecCCC----------C------------------------------c-
Q psy10044 75 DGFH-------------------QNEGVVVLGATNRR----------D------------------------------D- 94 (235)
Q Consensus 75 d~~~-------------------~~~~v~vIatTn~~----------~------------------------------~- 94 (235)
++.. ...++++|+++|.. . +
T Consensus 155 eg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l 234 (363)
T 3hws_A 155 EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 234 (363)
T ss_dssp HCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred cCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence 8431 22345555565542 1 1
Q ss_pred ----ccHHhhCCCcccEEEEcCCCCHHHHHHHHHH----HhcCc----c-------CCCCCHHHHHhc--CCCCCHHHHH
Q psy10044 95 ----LDKALLRPGRFDIEVNVPPPDYTGRREILDL----YLGKI----V-------SKNIDVDTLARG--TTGFTGADLE 153 (235)
Q Consensus 95 ----ld~al~rpgRf~~~i~i~~P~~~~R~~il~~----~l~~~----~-------~~~~~l~~la~~--t~G~s~~di~ 153 (235)
++|+|+. ||+..+.+.+|+.+++.+|++. ++..+ . .++.-++.|++. ...+..++|+
T Consensus 235 ~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 312 (363)
T 3hws_A 235 IKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLR 312 (363)
T ss_dssp HHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHH
T ss_pred HHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHH
Confidence 6888888 9999999999999999999986 22211 0 111125556643 3456679999
Q ss_pred HHHHHHHHHHHHcCC---C----CCcHHHHHHHH
Q psy10044 154 NMVNQAALRAAIDGV---P----HVTMKYLEYAR 180 (235)
Q Consensus 154 ~l~~~A~~~a~~~~~---~----~i~~~~~~~al 180 (235)
++++++...+..+.. . .||.+++++.+
T Consensus 313 ~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 313 SIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 999998887776531 1 36777766543
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.12 E-value=1.5e-10 Score=112.34 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=98.4
Q ss_pred CCCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhhC-CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 2 VTHPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 2 ~s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~~-~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
+.+.+++.++++.+. ..|.|+.+.+++.+|..++.. .|+||||||+|.+.+.++..+. ....+.+...++
T Consensus 224 l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~----~~~~~~L~~~l~--- 296 (854)
T 1qvr_A 224 LKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA----VDAGNMLKPALA--- 296 (854)
T ss_dssp STTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH---
T ss_pred hcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch----HHHHHHHHHHHh---
Confidence 358899999999997 578999999999999999875 6899999999999876543221 112233333333
Q ss_pred CCCCeEEEEecCCCC----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc------cCCCCCHHHHHh-----c
Q psy10044 79 QNEGVVVLGATNRRD----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI------VSKNIDVDTLAR-----G 143 (235)
Q Consensus 79 ~~~~v~vIatTn~~~----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~------~~~~~~l~~la~-----~ 143 (235)
..++.+|++||.++ .+|+++.| ||+. +.++.|+.+++.+|++.++... ...+..+..+++ .
T Consensus 297 -~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 297 -RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp -TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred -CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 35678999999775 47999999 9995 9999999999999999877543 112222444444 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Q psy10044 144 TTGFTGADLENMVNQAALRAAID 166 (235)
Q Consensus 144 t~G~s~~di~~l~~~A~~~a~~~ 166 (235)
+.+|.+.....++.+|...+..+
T Consensus 373 ~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 373 TERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp CSSCTHHHHHHHHHHHHHHHHHT
T ss_pred ccccChHHHHHHHHHHHHHHHhh
Confidence 56788999999999887766654
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.10 E-value=1.1e-10 Score=105.97 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=102.2
Q ss_pred CCCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 2 VTHPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 2 ~s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+.+.+|+.++++ ..|.|+.+.+++.+|..++...|+||||| +.. ...+.|+..++ ..
T Consensus 234 l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~~----------~a~~~L~~~L~----~g 290 (468)
T 3pxg_A 234 LRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AAI----------DASNILKPSLA----RG 290 (468)
T ss_dssp TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT----SS
T ss_pred hcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cch----------hHHHHHHHhhc----CC
Confidence 357889999998 78899999999999999999899999999 100 12233333333 45
Q ss_pred CeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc---cC---CCCCHHHHHhcC-----C
Q psy10044 82 GVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI---VS---KNIDVDTLARGT-----T 145 (235)
Q Consensus 82 ~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~---~~---~~~~l~~la~~t-----~ 145 (235)
.+.+|++||.++ .+|++++| ||. .|.|+.|+.+++..|++.++..+ .. .+..+..++..+ .
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 789999999987 69999999 998 59999999999999999988764 11 122244455443 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHh
Q psy10044 146 GFTGADLENMVNQAALRAAIDG-VPHVTMKYLEYARDKV 183 (235)
Q Consensus 146 G~s~~di~~l~~~A~~~a~~~~-~~~i~~~~~~~al~~~ 183 (235)
.+.+.....++.+|...+..+. ..+-....++..+++.
T Consensus 368 ~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 368 RFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 4567788888888876655543 3344455555555544
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.08 E-value=1.8e-10 Score=90.28 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=81.6
Q ss_pred CCCeeEEeccchhh--hhhccHHHHHHHHHHHHHhh-CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 3 THPDTNHAQGPEFD--EVLVGQGARRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 3 s~~~~~~v~~s~l~--~~~~g~~~~~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
.+.+++.++++.+. ..+.|.....++.+|..+.. ..|+||+|||+|.+...+.... .......+..++ +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~l~~~~---~---- 148 (195)
T 1jbk_A 77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL---A---- 148 (195)
T ss_dssp TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHH---H----
T ss_pred cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hHHHHHHHHHhh---c----
Confidence 47889999999887 46678888899999987754 5589999999999986653322 122233333333 2
Q ss_pred CCCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHH
Q psy10044 80 NEGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREIL 123 (235)
Q Consensus 80 ~~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il 123 (235)
..++.+|++||.++ .+|+++.+ ||+ .+++++|+.++|.+|+
T Consensus 149 ~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 35678899999876 78999999 998 6999999999999875
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.07 E-value=4.2e-10 Score=96.95 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=113.7
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
+.++++++++++...+.+.........|..... .|++|||||+|.+..++. ....++..++.....+..
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~----------~~~~l~~~l~~~~~~~~~ 133 (324)
T 1l8q_A 65 GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKER----------TQIEFFHIFNTLYLLEKQ 133 (324)
T ss_dssp TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCHH----------HHHHHHHHHHHHHHTTCE
T ss_pred CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCChH----------HHHHHHHHHHHHHHCCCe
Confidence 678999999999887766655444444444433 479999999999865321 112233333222223456
Q ss_pred EEEEecCCCC---cccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 84 VVLGATNRRD---DLDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 84 ~vIatTn~~~---~ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
+++++++.+. .++++|.+ ||+ ..+++++ +.++|..|++.++... ..++..++.+++.+ -..+++.+++
T Consensus 134 iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l 208 (324)
T 1l8q_A 134 IILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKI 208 (324)
T ss_dssp EEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHH
T ss_pred EEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHH
Confidence 7777777776 68999999 996 7899999 9999999999998643 22333477788888 4678888888
Q ss_pred HHHHHH---HHH-cCCCCC-cHHHHHHHHHHhhC
Q psy10044 157 NQAALR---AAI-DGVPHV-TMKYLEYARDKVLM 185 (235)
Q Consensus 157 ~~A~~~---a~~-~~~~~i-~~~~~~~al~~~~~ 185 (235)
+.+... +.. .+...+ +.+++.+++.....
T Consensus 209 ~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 209 KLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 877654 111 223457 88999988876543
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=1.8e-09 Score=93.94 Aligned_cols=170 Identities=19% Similarity=0.164 Sum_probs=117.6
Q ss_pred CCeeEEeccchhhhh----------------hccH-HHHHHHHHHHHHhhCC-CeEEEEccccccccccCCCCCCccHHH
Q psy10044 4 HPDTNHAQGPEFDEV----------------LVGQ-GARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQ 65 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~----------------~~g~-~~~~i~~~F~~A~~~~-P~Il~iDeiD~l~~~r~~~~~~~~~~~ 65 (235)
+.+++.++|....+. ..|. ....++.+++.+.... |++|+|||+|.+....+. .
T Consensus 76 ~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~ 147 (386)
T 2qby_A 76 KFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------D 147 (386)
T ss_dssp SCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------T
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------H
Confidence 567888887643221 0121 2333555666555544 999999999999754311 2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCC---CcccHHhhCCCccc-EEEEcCCCCHHHHHHHHHHHhcCc----cCCCCCH
Q psy10044 66 TINQLLAEMDGFHQNEGVVVLGATNRR---DDLDKALLRPGRFD-IEVNVPPPDYTGRREILDLYLGKI----VSKNIDV 137 (235)
Q Consensus 66 ~~~~ll~~ld~~~~~~~v~vIatTn~~---~~ld~al~rpgRf~-~~i~i~~P~~~~R~~il~~~l~~~----~~~~~~l 137 (235)
.+..++..++.. ...++.+|++||.+ +.+++.+.+ ||. ..+.+++|+.++..++++..+... ...+..+
T Consensus 148 ~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 224 (386)
T 2qby_A 148 ILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVI 224 (386)
T ss_dssp HHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHH
T ss_pred HHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 566677767654 34678999999987 578889988 775 589999999999999999877532 1112224
Q ss_pred HHHHhcCCC--CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 138 DTLARGTTG--FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 138 ~~la~~t~G--~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
..+++.+.. -.+..+.++|+.|...+..++...|+.+++..|+....
T Consensus 225 ~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 225 KLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 556665541 35667778999998888888888999999999988775
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.06 E-value=1e-09 Score=99.14 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=108.4
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
++.+|+.+++.. .+.+.++.+|..+.. ..++||||||+|.+.... .+.|+..++.
T Consensus 74 ~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~------------q~~LL~~le~-- 132 (447)
T 3pvs_A 74 ANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ------------QDAFLPHIED-- 132 (447)
T ss_dssp TTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT--
T ss_pred hCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH------------HHHHHHHHhc--
Confidence 467888888643 234567777777653 458999999999985422 2346666663
Q ss_pred CCCCeEEEEec--CCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc---------cCCCCCHHHHHhcCCCC
Q psy10044 79 QNEGVVVLGAT--NRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI---------VSKNIDVDTLARGTTGF 147 (235)
Q Consensus 79 ~~~~v~vIatT--n~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~~~~l~~la~~t~G~ 147 (235)
..+++|++| |....++++|++ |+. .+.+++|+.+++..+++.++... ..++..+..+++.+.|
T Consensus 133 --~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G- 206 (447)
T 3pvs_A 133 --GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG- 206 (447)
T ss_dssp --TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-
T ss_pred --CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-
Confidence 456777766 445689999999 886 78899999999999999998652 1122236677777554
Q ss_pred CHHHHHHHHHHHHHHHHHc--CCCCCcHHHHHHHHHHhhC
Q psy10044 148 TGADLENMVNQAALRAAID--GVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 148 s~~di~~l~~~A~~~a~~~--~~~~i~~~~~~~al~~~~~ 185 (235)
..+++.++++.+...+... +...||.+++.+++.+...
T Consensus 207 d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 207 DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhh
Confidence 6778888888877665423 4457999999999876543
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.06 E-value=7.1e-10 Score=106.18 Aligned_cols=139 Identities=17% Similarity=0.276 Sum_probs=94.9
Q ss_pred CCCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCC
Q psy10044 2 VTHPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 81 (235)
Q Consensus 2 ~s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~ 81 (235)
+.+.+++.+++ ...|.|+.+.+++.+|..+....|+||||| + . ....+.|+..++ ..
T Consensus 234 l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~---~-------~~~~~~L~~~l~----~~ 290 (758)
T 3pxi_A 234 LRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A-------IDASNILKPSLA----RG 290 (758)
T ss_dssp TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT----SS
T ss_pred hcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------C---c-------hhHHHHHHHHHh----cC
Confidence 35788888888 667899999999999999999999999999 1 0 012233333333 56
Q ss_pred CeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc-cCCCCC-----HHHHHh-----cCC
Q psy10044 82 GVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNID-----VDTLAR-----GTT 145 (235)
Q Consensus 82 ~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~-~~~~~~-----l~~la~-----~t~ 145 (235)
.+.+|++||..+ .+|++++| ||. .|.|+.|+.+++.+||+.++..+ ....++ +..++. .+.
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~ 367 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccc
Confidence 789999999988 79999999 995 69999999999999999887764 112222 333333 256
Q ss_pred CCCHHHHHHHHHHHHHHHHHc
Q psy10044 146 GFTGADLENMVNQAALRAAID 166 (235)
Q Consensus 146 G~s~~di~~l~~~A~~~a~~~ 166 (235)
++.+++...++.+|...+...
T Consensus 368 ~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 368 RFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp SCTTHHHHHHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHhh
Confidence 788899999999887665544
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.05 E-value=8.1e-10 Score=90.06 Aligned_cols=154 Identities=8% Similarity=0.032 Sum_probs=102.9
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
+.+++.++++++...+.. .+.. ...|.+|+|||+|.+..... ....++..++.......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~~----------~~~~l~~~l~~~~~~~~~ 139 (242)
T 3bos_A 80 ERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGHPL----------WEEAIFDLYNRVAEQKRG 139 (242)
T ss_dssp TCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTCHH----------HHHHHHHHHHHHHHHCSC
T ss_pred CCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCCHH----------HHHHHHHHHHHHHHcCCC
Confidence 456777888776654321 1111 13478999999999854210 122233333322222334
Q ss_pred -EEEEecCCCC---cccHHhhCCCccc--EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHH
Q psy10044 84 -VVLGATNRRD---DLDKALLRPGRFD--IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENM 155 (235)
Q Consensus 84 -~vIatTn~~~---~ld~al~rpgRf~--~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l 155 (235)
+++++++.++ .+++++.+ ||. ..+++++|+.+++.++++.++... ..++..+..+++.+.| +.+++.++
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~ 216 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDV 216 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 5555554454 56789999 886 899999999999999999988643 2233346778888766 88999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 156 VNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 156 ~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
++.+...|..++ ..||.+++.++++
T Consensus 217 l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 217 LDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 999988776555 4599999998874
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=1.5e-09 Score=94.97 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=111.5
Q ss_pred CCeeEEeccchhh-hh----------h-------ccHH-HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHH
Q psy10044 4 HPDTNHAQGPEFD-EV----------L-------VGQG-ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN 64 (235)
Q Consensus 4 ~~~~~~v~~s~l~-~~----------~-------~g~~-~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~ 64 (235)
+.+++.++|+... +. . .|.+ ...+..+++.+....+ +|+|||+|.+...+. .
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~--------~ 151 (384)
T 2qby_B 81 DVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG--------G 151 (384)
T ss_dssp TCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT--------S
T ss_pred CceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC--------C
Confidence 7789999887643 11 0 1111 3345555665555444 999999999965321 1
Q ss_pred HH-HHHHHHHhcCCCCCCCeEEEEecCCC---CcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcC-c---cCCCCC
Q psy10044 65 QT-INQLLAEMDGFHQNEGVVVLGATNRR---DDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK-I---VSKNID 136 (235)
Q Consensus 65 ~~-~~~ll~~ld~~~~~~~v~vIatTn~~---~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~-~---~~~~~~ 136 (235)
.. +..++... .++.+|++||.+ +.+++++.+ ||...++|++|+.++..++++..+.. . ..++..
T Consensus 152 ~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~ 223 (384)
T 2qby_B 152 DIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEI 223 (384)
T ss_dssp HHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHH
T ss_pred ceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHH
Confidence 12 33333322 678999999987 789999999 99889999999999999999998753 1 222333
Q ss_pred HHHHHhcCCCC--CHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 137 VDTLARGTTGF--TGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 137 l~~la~~t~G~--s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
+..+++.+.+. .++.+.++++.|...|. +...|+.+++..++....
T Consensus 224 ~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 224 LSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 66677766522 34566678888876665 567899999999988775
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.01 E-value=3.1e-09 Score=85.99 Aligned_cols=135 Identities=23% Similarity=0.271 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...++.+++.+. ...|.+|+|||+|.+.. ...+.++..++.. ..++.+|++||.+..+++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 108 VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------HHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHhhhchhcCCceEEEEECcccccH------------HHHHHHHHHHhcC--CCceEEEEEeCChHhCCHHH
Confidence 345666666653 33579999999999732 2456667777643 45788999999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
.+ |+ ..+++++|+.++..++++.++... ..++..+..+++.+.| .++++.++++.|... +...||.++++
T Consensus 174 ~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~ 245 (250)
T 1njg_A 174 LS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVS 245 (250)
T ss_dssp HT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHH
T ss_pred HH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc----cCceecHHHHH
Confidence 98 76 689999999999999999888542 2233347788898877 899999999887532 34479999998
Q ss_pred HHH
Q psy10044 178 YAR 180 (235)
Q Consensus 178 ~al 180 (235)
+++
T Consensus 246 ~~~ 248 (250)
T 1njg_A 246 AML 248 (250)
T ss_dssp HHS
T ss_pred HHh
Confidence 875
No 58
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.01 E-value=2.1e-09 Score=86.04 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=89.5
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
..+.+|+|||+|.+... ..+.++..++.. ..++.+|++||.++.+++++.+ ||. .+++++|+.
T Consensus 101 ~~~~vliiDe~~~l~~~------------~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~ 163 (226)
T 2chg_A 101 APFKIIFLDEADALTAD------------AQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPK 163 (226)
T ss_dssp CSCEEEEEETGGGSCHH------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCH
T ss_pred cCceEEEEeChhhcCHH------------HHHHHHHHHHhc--CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCH
Confidence 46899999999998532 234445455432 3567888999999999999999 997 899999999
Q ss_pred HHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 117 TGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 117 ~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
++..++++.++... ..++..+..+++.+.| .++.+.++++.+...+ ..|+.+++++++.
T Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 164 EAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 99999999887543 2233346667776654 5666666666655432 5799999998875
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.98 E-value=5.4e-09 Score=90.17 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=97.2
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC---------CCCCCeEEEEecCCCC-----cccHHhhCCCcc
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF---------HQNEGVVVLGATNRRD-----DLDKALLRPGRF 105 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~---------~~~~~v~vIatTn~~~-----~ld~al~rpgRf 105 (235)
+|+||||+|.+.. ...+.|+..|+.- ..+.++++|+|+|..+ .+++++++ ||
T Consensus 111 ~vl~iDEi~~~~~------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf 176 (331)
T 2r44_A 111 NFILADEVNRSPA------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RF 176 (331)
T ss_dssp SEEEEETGGGSCH------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TS
T ss_pred cEEEEEccccCCH------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--he
Confidence 7999999998632 2334455544421 1244678888888443 39999999 99
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCccCC-------------------CC--C---HHHHHhc------------------
Q psy10044 106 DIEVNVPPPDYTGRREILDLYLGKIVSK-------------------NI--D---VDTLARG------------------ 143 (235)
Q Consensus 106 ~~~i~i~~P~~~~R~~il~~~l~~~~~~-------------------~~--~---l~~la~~------------------ 143 (235)
+..++++.|+.++|.+|++..+...... .+ + ++.+++.
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~ 256 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASY 256 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999987642110 11 1 2223221
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 144 -TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 144 -t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
..|.|++.+..+++.|...|..+++..++.+|+.+++..+..
T Consensus 257 ~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 257 ILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred cccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 126799999999999998999999999999999999988754
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.94 E-value=4.4e-09 Score=90.96 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=94.8
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC----CC-------CCCCeEEEEecCCCC-cccHHhhCCCccc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG----FH-------QNEGVVVLGATNRRD-DLDKALLRPGRFD 106 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~----~~-------~~~~v~vIatTn~~~-~ld~al~rpgRf~ 106 (235)
+++|||||+|.+... ..+.|+..++. +. ...++++|+|||..+ .++++|++ ||+
T Consensus 145 ~~vl~iDEi~~l~~~------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~ 210 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFG 210 (350)
T ss_dssp TEEEEETTGGGSCHH------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCS
T ss_pred CCEEEEeChhhCCHH------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcc
Confidence 689999999998432 23444444432 11 113789999999755 89999999 999
Q ss_pred EEEEcCCC-CHHHHHHHHHHHhc-------------------------------CccCCCCCHHHHHhcC---CCCCHHH
Q psy10044 107 IEVNVPPP-DYTGRREILDLYLG-------------------------------KIVSKNIDVDTLARGT---TGFTGAD 151 (235)
Q Consensus 107 ~~i~i~~P-~~~~R~~il~~~l~-------------------------------~~~~~~~~l~~la~~t---~G~s~~d 151 (235)
.++++++| +.++|.+|++..+. ....++.-+..+++.. .+-+.+.
T Consensus 211 ~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~ 290 (350)
T 1g8p_A 211 LSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRG 290 (350)
T ss_dssp EEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHH
T ss_pred eEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccH
Confidence 99999999 67888888876321 0011111233444433 2237899
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 152 LENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 152 i~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
+.++++.|...|..++...|+.+|+.+|+..+..
T Consensus 291 ~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 291 ELTLLRSARALAALEGATAVGRDHLKRVATMALS 324 (350)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHh
Confidence 9999999999998889888999999999887754
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.92 E-value=1.4e-08 Score=88.69 Aligned_cols=135 Identities=10% Similarity=0.037 Sum_probs=104.2
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC--CCCeEEEEecCCC---CcccHHhhCCCcccE-EEE
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEGVVVLGATNRR---DDLDKALLRPGRFDI-EVN 110 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vIatTn~~---~~ld~al~rpgRf~~-~i~ 110 (235)
..|.+|+|||+|.+. ...+..|+..++.... ..++.+|++||.+ +.+++.+.+ ||.. .+.
T Consensus 124 ~~~~vlilDE~~~l~------------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~ 189 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLA------------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIR 189 (389)
T ss_dssp TCCEEEEEETGGGSC------------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEE
T ss_pred CCeEEEEEECccccc------------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEE
Confidence 458999999999981 2356666666665432 2578899999988 678999988 8875 899
Q ss_pred cCCCCHHHHHHHHHHHhcCc----cCCCCCHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy10044 111 VPPPDYTGRREILDLYLGKI----VSKNIDVDTLARGTT--------GFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178 (235)
Q Consensus 111 i~~P~~~~R~~il~~~l~~~----~~~~~~l~~la~~t~--------G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~ 178 (235)
|++++.++..++++..+... ..++..+..+++.+. +-.++.+.++++.|...|..++...++.+++..
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~ 269 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 269 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 99999999999999887542 122233667777774 226788899999999888888888999999999
Q ss_pred HHHHhhC
Q psy10044 179 ARDKVLM 185 (235)
Q Consensus 179 al~~~~~ 185 (235)
++.....
T Consensus 270 ~~~~~~~ 276 (389)
T 1fnn_A 270 SSKEVLF 276 (389)
T ss_dssp HHHHHSC
T ss_pred HHHHHhh
Confidence 9888753
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.87 E-value=5.6e-09 Score=99.99 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=100.6
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC----
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH---- 78 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~---- 78 (235)
++.+|+.++++++.+.+... -..++...+...++||||||+|.+. ..+.+.|+..|+.-.
T Consensus 548 ~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 548 DEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH------------PDVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp CTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC------------HHHHHHHHHHHHHSBCC--
T ss_pred CCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC------------HHHHHHHHHHhccCeEEcC
Confidence 46799999999999887665 2233445556667999999999872 235666777666421
Q ss_pred -----CCCCeEEEEecCCCCc------------ccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc----c------
Q psy10044 79 -----QNEGVVVLGATNRRDD------------LDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI----V------ 131 (235)
Q Consensus 79 -----~~~~v~vIatTn~~~~------------ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~----~------ 131 (235)
...++++|+|||.+.. ++|+|+. ||+..|.|++|+.+++..|++.++... .
T Consensus 612 ~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 689 (758)
T 3pxi_A 612 KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSI 689 (758)
T ss_dssp ---CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 2246899999997654 7899998 999999999999999999999988653 1
Q ss_pred -CCCCCHHHHHhc--CCCCCHHHHHHHHHHHHHHH
Q psy10044 132 -SKNIDVDTLARG--TTGFTGADLENMVNQAALRA 163 (235)
Q Consensus 132 -~~~~~l~~la~~--t~G~s~~di~~l~~~A~~~a 163 (235)
.++.-++.|++. ...+..++|+++++++...+
T Consensus 690 ~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 690 ELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp EECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHH
T ss_pred EECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Confidence 111225556653 34567788999888765443
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.85 E-value=7.3e-09 Score=80.85 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=76.2
Q ss_pred CCCeeEEeccchhhh--hhccHHHHHHHHHHHHHhhC-CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 3 THPDTNHAQGPEFDE--VLVGQGARRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 3 s~~~~~~v~~s~l~~--~~~g~~~~~i~~~F~~A~~~-~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
.+.+++.++++.+.. .+.|.....++.++..+... .|++|+|||+|.+...+........ +.+.+...++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~---~~~~l~~~~~---- 149 (187)
T 2p65_A 77 KGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD---AGNILKPMLA---- 149 (187)
T ss_dssp TTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC---THHHHHHHHH----
T ss_pred cCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH---HHHHHHHHHh----
Confidence 478899999888874 36678888899999888765 6899999999999866542211122 2233333333
Q ss_pred CCCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCC
Q psy10044 80 NEGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPD 115 (235)
Q Consensus 80 ~~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~ 115 (235)
..++.+|++||.++ .+|+++++ ||+. ++++.|+
T Consensus 150 ~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 150 RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 35678999999875 68999999 9995 9999986
No 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.85 E-value=1.9e-09 Score=94.86 Aligned_cols=180 Identities=14% Similarity=0.194 Sum_probs=108.5
Q ss_pred CCCeeEEeccchhh-hhhccHH-HHHHHHHHHHHh----hCCCeEEEEccccccccccCCCCC--CccHHHHHHHHHHHh
Q psy10044 3 THPDTNHAQGPEFD-EVLVGQG-ARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEM 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~-~~~~g~~-~~~i~~~F~~A~----~~~P~Il~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~l 74 (235)
.+.+|+.++++.+. ..|.|.. +..+..+|..+. ...++||||||+|.+..++.+... +.....+.+.|+..|
T Consensus 96 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 96 LDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIV 175 (376)
T ss_dssp TTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHH
T ss_pred hCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHh
Confidence 36799999998876 4566765 556777776543 335799999999999887543211 112234778888888
Q ss_pred cCCC-------------------CCCCeEEEEecCC-----------------------------------------CCc
Q psy10044 75 DGFH-------------------QNEGVVVLGATNR-----------------------------------------RDD 94 (235)
Q Consensus 75 d~~~-------------------~~~~v~vIatTn~-----------------------------------------~~~ 94 (235)
++.. ...++++|++||. ...
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 8531 1245688888872 112
Q ss_pred ccHHhhCCCcccEEEEcCCCCHHHHHHHHHH----HhcC-----------ccCCCCCHHHHHhcCC--CCCHHHHHHHHH
Q psy10044 95 LDKALLRPGRFDIEVNVPPPDYTGRREILDL----YLGK-----------IVSKNIDVDTLARGTT--GFTGADLENMVN 157 (235)
Q Consensus 95 ld~al~rpgRf~~~i~i~~P~~~~R~~il~~----~l~~-----------~~~~~~~l~~la~~t~--G~s~~di~~l~~ 157 (235)
+.|+|.. ||+..+.|++++.++...|+.. ++.. ...++.-+..|++... +...++|.++++
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 5677777 8989999999999999999873 2111 0111222555666532 467899999999
Q ss_pred HHHHHHHHcCC------CCCcHHHHHHHHHHhh
Q psy10044 158 QAALRAAIDGV------PHVTMKYLEYARDKVL 184 (235)
Q Consensus 158 ~A~~~a~~~~~------~~i~~~~~~~al~~~~ 184 (235)
.+...+..+.. ..||.+++..+.+.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 366 (376)
T 1um8_A 334 DFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 366 (376)
T ss_dssp HHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEE
T ss_pred HHHHHHHhhccCCCCCEEEEeHHHhcCCCCcee
Confidence 88877665321 2488888876554443
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.83 E-value=3.4e-07 Score=79.32 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=85.0
Q ss_pred CeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q psy10044 82 GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQA 159 (235)
Q Consensus 82 ~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A 159 (235)
++.++++||.+..|++++++ ||...+.+++|+.+++.++++...... ..++..+..+++.+.| +++++.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46788899999999999999 999899999999999999999887543 2233337778888887 568999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 160 ALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 160 ~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
...|..++...||.+++.+|++....
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhCC
Confidence 88888888888999999999998743
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.82 E-value=7.9e-09 Score=98.82 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=102.5
Q ss_pred CCeeEEeccchhhhh------------hccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEV------------LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~------------~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+.+|+.++++++.+. |+|..+. ..+....+...++||||||+|.+. ..+.+.|+
T Consensus 513 ~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll 578 (758)
T 1r6b_X 513 GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNILL 578 (758)
T ss_dssp TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHH
T ss_pred cCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC------------HHHHHHHH
Confidence 678999999998764 5554333 223444555667999999999863 23667777
Q ss_pred HHhcCCC----C-----CCCeEEEEecCCCC-------------------------cccHHhhCCCcccEEEEcCCCCHH
Q psy10044 72 AEMDGFH----Q-----NEGVVVLGATNRRD-------------------------DLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 72 ~~ld~~~----~-----~~~v~vIatTn~~~-------------------------~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
..|+.-. . -.++++|+|||... .++|+|+. ||+..|.|++|+.+
T Consensus 579 ~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~ 656 (758)
T 1r6b_X 579 QVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTD 656 (758)
T ss_dssp HHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHH
T ss_pred HHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHH
Confidence 7776321 0 14688999999854 68899999 99999999999999
Q ss_pred HHHHHHHHHhcCc-----------cCCCCCHHHHHhc--CCCCCHHHHHHHHHHHHHH
Q psy10044 118 GRREILDLYLGKI-----------VSKNIDVDTLARG--TTGFTGADLENMVNQAALR 162 (235)
Q Consensus 118 ~R~~il~~~l~~~-----------~~~~~~l~~la~~--t~G~s~~di~~l~~~A~~~ 162 (235)
++..|++.++... ..++.-+..|++. ..++..+++.++++.+...
T Consensus 657 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 657 VIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 9999999988632 1112225556653 3457789999998887654
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.80 E-value=1.2e-08 Score=86.79 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=98.2
Q ss_pred CCeeEEeccchhhhh-----hcc-------HHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEV-----LVG-------QGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~-----~~g-------~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+.+|+.++++.+... +.| ... ...+....+...+++|||||+|.+.. .+.+.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~~------------~~~~~Ll 140 (311)
T 4fcw_A 75 EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAHP------------DVFNILL 140 (311)
T ss_dssp GGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSCH------------HHHHHHH
T ss_pred CcceEEeecccccccccHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcCH------------HHHHHHH
Confidence 457888888876432 111 110 01222333444569999999998832 2455666
Q ss_pred HHhcCCC---------CCCCeEEEEecCC--------------------------CCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 72 AEMDGFH---------QNEGVVVLGATNR--------------------------RDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 72 ~~ld~~~---------~~~~v~vIatTn~--------------------------~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
..++.-. .-.++++|+|||. ...++|+|++ ||+..+.+++|+.
T Consensus 141 ~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~ 218 (311)
T 4fcw_A 141 QMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTK 218 (311)
T ss_dssp HHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCH
T ss_pred HHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCH
Confidence 6665321 1136789999998 5578999998 9999999999999
Q ss_pred HHHHHHHHHHhcCc-----------cCCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHHHH
Q psy10044 117 TGRREILDLYLGKI-----------VSKNIDVDTLARGTT--GFTGADLENMVNQAALRAA 164 (235)
Q Consensus 117 ~~R~~il~~~l~~~-----------~~~~~~l~~la~~t~--G~s~~di~~l~~~A~~~a~ 164 (235)
+++..|++.++... ..++..+..|++..- ....++|.++++++...+.
T Consensus 219 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 219 EQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 99999999988653 112223566666554 6788999999998876544
No 68
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.78 E-value=1.5e-09 Score=93.24 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=89.3
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhC-----CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR-----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~-----~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
+.+++.+++++.. ...++..+..+... .+.||||||+|.+.+ ....+.|+..++..
T Consensus 73 ~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~- 133 (324)
T 3u61_B 73 NADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAY- 133 (324)
T ss_dssp TEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHH-
T ss_pred CCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhC-
Confidence 5678888887632 34555554443322 579999999999852 11234455555532
Q ss_pred CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc---------cCCC-CCHHHHHhcCCCCC
Q psy10044 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI---------VSKN-IDVDTLARGTTGFT 148 (235)
Q Consensus 79 ~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~~-~~l~~la~~t~G~s 148 (235)
..++.+|++||.+..+++++++ ||. .++|++|+.++|.+|++.++... ..++ ..+..+++.+.|-.
T Consensus 134 -~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~ 209 (324)
T 3u61_B 134 -SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF 209 (324)
T ss_dssp -GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT
T ss_pred -CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH
Confidence 2467888999999999999999 995 79999999999988877665332 1122 33566777655422
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 149 GADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 149 ~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+++.+.++.+. ....||.+++..++.
T Consensus 210 -R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 210 -RKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp -THHHHHHHHHG------GGTCBCC--------
T ss_pred -HHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 22333333332 223477777766543
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.72 E-value=2.3e-08 Score=86.36 Aligned_cols=112 Identities=7% Similarity=0.089 Sum_probs=82.5
Q ss_pred CCeeEEeccchhhhh----------h------ccHHHHHHHHHHHHH--hhCCCeEEEEccccccccccCCCCCCccHHH
Q psy10044 4 HPDTNHAQGPEFDEV----------L------VGQGARRVRDLFKAA--KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ 65 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~----------~------~g~~~~~i~~~F~~A--~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~ 65 (235)
+..+++|+|..+.+. . .|.+...++..|... ....|+|++|||+|.|. . ..
T Consensus 80 ~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~----------q~ 148 (318)
T 3te6_A 80 IFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S----------EK 148 (318)
T ss_dssp CEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C----------TH
T ss_pred ceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c----------ch
Confidence 356888998765432 2 244677889999886 45668999999999997 1 12
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCc----ccHHhhCCCccc-EEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 66 TINQLLAEMDGFHQNEGVVVLGATNRRDD----LDKALLRPGRFD-IEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 66 ~~~~ll~~ld~~~~~~~v~vIatTn~~~~----ld~al~rpgRf~-~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
++..|+.... ..+.++++|+++|..+. |++++++ ||+ ..|.|++++.++-.+|++..+...
T Consensus 149 ~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 149 ILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 5555665433 24568999999998764 5566677 887 689999999999999999988654
No 70
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.69 E-value=1.9e-08 Score=91.93 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=89.0
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-------C-CCCCeEEEEecCCCCc---ccHHhhCCCccc
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-------H-QNEGVVVLGATNRRDD---LDKALLRPGRFD 106 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-------~-~~~~v~vIatTn~~~~---ld~al~rpgRf~ 106 (235)
.++|||||||+.+. ..+.+.|+..|+.- . ..+..++|+|||.+.. ..+++++ ||.
T Consensus 109 ~~~IL~IDEI~r~~------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~ 174 (500)
T 3nbx_X 109 EAEIVFLDEIWKAG------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RML 174 (500)
T ss_dssp GCSEEEEESGGGCC------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCC
T ss_pred cceeeeHHhHhhhc------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHH
Confidence 47899999997642 23556677766521 1 1122356778885332 4469999 999
Q ss_pred EEEEcCCCCH-HHHHHHHHHHhcCccC-----C---------------CC--C---HHHHHhc---------CCCCCHHH
Q psy10044 107 IEVNVPPPDY-TGRREILDLYLGKIVS-----K---------------NI--D---VDTLARG---------TTGFTGAD 151 (235)
Q Consensus 107 ~~i~i~~P~~-~~R~~il~~~l~~~~~-----~---------------~~--~---l~~la~~---------t~G~s~~d 151 (235)
..+.+++|+. ++|..|++........ . .+ + ++.+++. ..|.|++.
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~ 254 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRR 254 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhH
Confidence 9999999987 7889998876532100 0 11 1 2222222 35899999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 152 LENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 152 i~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
+..+++.|...|..+++..++.+|+. ++..+
T Consensus 255 ~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 255 WKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 99999999999999999999999998 44433
No 71
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=3.3e-07 Score=79.06 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=90.9
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
.+.||+|||+|.+... ..+.|+..++.. ..+..+|.+||.++.+++++++ |+. .+.+++|+.+
T Consensus 133 ~~~vliiDE~~~l~~~------------~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~ 195 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD------------AQSALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDAS 195 (353)
T ss_dssp SCEEEEETTGGGSCHH------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHH
T ss_pred CceEEEEECCCccCHH------------HHHHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHH
Confidence 3569999999998532 234566666543 3456677788999999999999 986 8999999999
Q ss_pred HHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Q psy10044 118 GRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVP-HVTMKYLEYARD 181 (235)
Q Consensus 118 ~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~-~i~~~~~~~al~ 181 (235)
+...+++..+... ..++..+..+++.+.| ..+.+.++++.+...+.+.+.. .|+.+++.+++.
T Consensus 196 ~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 196 NAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 9999999887543 2233347778888776 4666666666666555444433 699999987765
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.66 E-value=9.8e-08 Score=86.22 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=98.7
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEe---------cC---CCCcccHHhhCCCccc
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGA---------TN---RRDDLDKALLRPGRFD 106 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIat---------Tn---~~~~ld~al~rpgRf~ 106 (235)
|.|+||||+|.+- ....+.|+..|+.. ..+++++++ |+ .+..|+|.+++ ||.
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVM 359 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--hcc
Confidence 4699999999983 34678888888854 334555555 33 27889999999 997
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 107 IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGT-TGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t-~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
. +.|++|+.++..++++..+... ..++..+..+++.+ .| +++..-.+++.|...|..++...|+.+++.+|+.-+
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 6 6999999999999999876432 12222355667766 44 899999999999999999999999999999998766
No 73
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.65 E-value=9.4e-08 Score=89.18 Aligned_cols=132 Identities=21% Similarity=0.201 Sum_probs=96.0
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCCC-------------c
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-----------HQNEGVVVLGATNRRD-------------D 94 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vIatTn~~~-------------~ 94 (235)
.+|+||||+|.+... ..+.|+..|+.- ..+.++.+|||||.+. .
T Consensus 392 ~gil~IDEid~l~~~------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~ 459 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDE------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNIN 459 (595)
T ss_dssp SSEECCTTTTCCCSH------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTC
T ss_pred CCcEEeehhhhCCHh------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccC
Confidence 489999999997431 334555555421 1134688999999887 8
Q ss_pred ccHHhhCCCccc-EEEEcCCCCHHHHHHHHHHHhcCcc---------------------------CCCCCHHHHHhc---
Q psy10044 95 LDKALLRPGRFD-IEVNVPPPDYTGRREILDLYLGKIV---------------------------SKNIDVDTLARG--- 143 (235)
Q Consensus 95 ld~al~rpgRf~-~~i~i~~P~~~~R~~il~~~l~~~~---------------------------~~~~~l~~la~~--- 143 (235)
|+++|++ ||| ..+..+.|+.+ +..|.+..+.... .++...+.|.+.
T Consensus 460 l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 460 LPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVE 536 (595)
T ss_dssp SCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTT
T ss_pred CCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 9999999 998 45666778888 8888887775321 011112223322
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 144 -----------TTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 144 -----------t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
+.+.|++.+.++++.|...|..+++..++.+|+.+|+.-+..
T Consensus 537 lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 537 MRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp SSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred HHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999876643
No 74
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=6.4e-08 Score=88.79 Aligned_cols=157 Identities=12% Similarity=0.146 Sum_probs=95.3
Q ss_pred CCeeEEeccchhhhhhccHHHHH-------HHHHHHHH-----hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARR-------VRDLFKAA-----KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~-------i~~~F~~A-----~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
|.+++.++++++.+.+..+.... ++.+|..+ ....++||||||+|.+..... ..++.|+
T Consensus 102 ~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~---------~~l~~L~ 172 (516)
T 1sxj_A 102 GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR---------GGVGQLA 172 (516)
T ss_dssp TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST---------THHHHHH
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH---------HHHHHHH
Confidence 67899999998776543332111 33444444 235689999999999976321 1234444
Q ss_pred HHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCH
Q psy10044 72 AEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTG 149 (235)
Q Consensus 72 ~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~ 149 (235)
..++. .+.++++|+++.....+++ +. |+...+.|++|+.+++.++++..+... ..++..+..+++.+.
T Consensus 173 ~~l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~---- 242 (516)
T 1sxj_A 173 QFCRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR---- 242 (516)
T ss_dssp HHHHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT----
T ss_pred HHHHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----
Confidence 44442 2345666665555455654 43 445689999999999999998876442 234444888888764
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+|+..+++.....+. +...|+.+++.+++.
T Consensus 243 GdiR~~i~~L~~~~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 243 GDIRQVINLLSTIST--TTKTINHENINEISK 272 (516)
T ss_dssp TCHHHHHHHHTHHHH--HSSCCCTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 455555554333222 234567666665554
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.60 E-value=5.2e-07 Score=78.40 Aligned_cols=133 Identities=23% Similarity=0.276 Sum_probs=97.8
Q ss_pred HHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 26 RVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 26 ~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
.++.+++.+.. ..+.||+|||+|.+.. ...+.|+..++. ...++++|++||.+..+++++.+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------HHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHhhccccCCeEEEEEECcchhcH------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh
Confidence 45666666653 3478999999999832 245667777764 34578888999999999999998
Q ss_pred CCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 102 PGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 102 pgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
|+ ..+++++|+.++...+++..+... ..++..+..+++.+.| +++++.++++.+... +...|+.+++.++
T Consensus 169 --r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~----~~~~i~~~~v~~~ 240 (373)
T 1jr3_A 169 --RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAM 240 (373)
T ss_dssp --TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHH----TTTCBCHHHHHHH
T ss_pred --he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh----cCCcccHHHHHHH
Confidence 77 689999999999999999887543 2222236778888876 788888888877533 2345888877665
Q ss_pred H
Q psy10044 180 R 180 (235)
Q Consensus 180 l 180 (235)
+
T Consensus 241 ~ 241 (373)
T 1jr3_A 241 L 241 (373)
T ss_dssp T
T ss_pred h
Confidence 4
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=8e-07 Score=75.49 Aligned_cols=147 Identities=14% Similarity=0.041 Sum_probs=96.8
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHh-------hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAK-------DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~-------~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
+++.+++++.. +...++++++... ...+.+|+|||+|.+... ..+.|+..++.
T Consensus 74 ~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~------------~~~~L~~~le~-- 133 (323)
T 1sxj_B 74 GVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG------------AQQALRRTMEL-- 133 (323)
T ss_dssp HEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH------------HHHTTHHHHHH--
T ss_pred CEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH------------HHHHHHHHHhc--
Confidence 45666665421 1345555555544 224799999999998532 23445555553
Q ss_pred CCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 79 ~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
...++.+|++||.+..+++++.+ |+. .+++++|+.++..++++..+... ..++..+..+++.+.| .++.+.+++
T Consensus 134 ~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l 209 (323)
T 1sxj_B 134 YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNL 209 (323)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 23567888899999999999999 775 89999999999999999887542 2223346677777755 455555555
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 157 NQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 157 ~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+.+... ...++.+++.+++.
T Consensus 210 ~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 210 QSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHH-----HSSBCHHHHHHHHT
T ss_pred HHHHhc-----CCCcCHHHHHHHHC
Confidence 544421 13578888877654
No 77
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.52 E-value=4.7e-07 Score=76.78 Aligned_cols=121 Identities=15% Similarity=0.055 Sum_probs=84.8
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
..+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.++.+++++.+ |+. .+.+++|+.
T Consensus 101 ~~~~vliiDe~~~l~~------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~ 163 (319)
T 2chq_A 101 APFKIIFLDEADALTA------------DAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPK 163 (319)
T ss_dssp CCCEEEEEETGGGSCH------------HHHHTTGGGTSS--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCH
T ss_pred CCceEEEEeCCCcCCH------------HHHHHHHHHHHh--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCH
Confidence 3479999999999843 123455666654 34578899999999999999999 886 899999999
Q ss_pred HHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 117 TGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 117 ~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
+++..+++..+... ..++..+..+++.+.| ..+.+.++++.+.. . ...++.+++.+++
T Consensus 164 ~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~----~-~~~i~~~~v~~~~ 223 (319)
T 2chq_A 164 EAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA----I-GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH----S-SSCBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH----c-CCCCCHHHHHHHH
Confidence 99999999888653 2233346667776654 44444455544332 1 3458888877654
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.45 E-value=1.8e-07 Score=90.64 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=98.2
Q ss_pred CCeeEEeccchhhhh------------hccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEV------------LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~------------~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+.+|+.++|+++.+. |+|..+ ...+....+...+++|||||+|.+- ..+.+.|+
T Consensus 616 ~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll 681 (854)
T 1qvr_A 616 EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH------------PDVFNILL 681 (854)
T ss_dssp GGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC------------HHHHHHHH
T ss_pred CCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC------------HHHHHHHH
Confidence 568999999887653 223322 1334444555567999999999862 24678888
Q ss_pred HHhcCCC---------CCCCeEEEEecCCC--------------------------CcccHHhhCCCcccEEEEcCCCCH
Q psy10044 72 AEMDGFH---------QNEGVVVLGATNRR--------------------------DDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 72 ~~ld~~~---------~~~~v~vIatTn~~--------------------------~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
..|+.-. .-.++++|+|||.. ..+.|+|+. ||+..+.+.+|+.
T Consensus 682 ~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~ 759 (854)
T 1qvr_A 682 QILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTK 759 (854)
T ss_dssp HHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCH
T ss_pred HHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCH
Confidence 8887431 11368899999972 235677777 9999999999999
Q ss_pred HHHHHHHHHHhcCc-----------cCCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHHHH
Q psy10044 117 TGRREILDLYLGKI-----------VSKNIDVDTLARGTT--GFTGADLENMVNQAALRAA 164 (235)
Q Consensus 117 ~~R~~il~~~l~~~-----------~~~~~~l~~la~~t~--G~s~~di~~l~~~A~~~a~ 164 (235)
++...|++.++... ..++.-++.|++..- .+..++|+++++++...+.
T Consensus 760 edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 760 EQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999988642 011122555666544 6788999999998876544
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.38 E-value=3.2e-06 Score=74.25 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=97.8
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC-CC--CCeEEEEecCCCC---ccc---HHhhCCCcccE
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QN--EGVVVLGATNRRD---DLD---KALLRPGRFDI 107 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~--~~v~vIatTn~~~---~ld---~al~rpgRf~~ 107 (235)
..|.+|+|||+|.+...+.. ....+..++..++... .. .++.+|++||.++ .++ +.+.+ ||..
T Consensus 137 ~~~~llvlDe~~~l~~~~~~------~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~ 208 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRI------AAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGF 208 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTS------CHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSE
T ss_pred CCeEEEEEeCHHHHhhccCc------chHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCC
Confidence 56899999999998643210 1234444444444332 12 6788999998765 455 67777 6666
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCcc----CCCCCHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy10044 108 EVNVPPPDYTGRREILDLYLGKIV----SKNIDVDTLARGTT------GFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177 (235)
Q Consensus 108 ~i~i~~P~~~~R~~il~~~l~~~~----~~~~~l~~la~~t~------G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~ 177 (235)
.+.+++++.++..++++..+.... .++..+..+++.+. | .+..+..++..|...+..++...++.+++.
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 699999999999999987764321 12223566777777 5 577888899988888888888889999999
Q ss_pred HHHHHhh
Q psy10044 178 YARDKVL 184 (235)
Q Consensus 178 ~al~~~~ 184 (235)
.++....
T Consensus 288 ~~~~~~~ 294 (412)
T 1w5s_A 288 KAVSENE 294 (412)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 8887654
No 80
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=4e-06 Score=71.22 Aligned_cols=121 Identities=13% Similarity=0.075 Sum_probs=83.2
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
..+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.++.+++++.+ |+. .+.+++|+.
T Consensus 109 ~~~~vliiDe~~~l~~------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~ 171 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRD 171 (327)
T ss_dssp CSCEEEEEETGGGSCH------------HHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCH
T ss_pred CCCeEEEEeCCCcCCH------------HHHHHHHHHHHh--cCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCH
Confidence 3478999999999843 134555666653 24567888899999999999999 886 799999999
Q ss_pred HHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy10044 117 TGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 117 ~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al 180 (235)
++...+++..+... ..++..+..+++.+.| +.+.+.++++.+.. ....++.+++..++
T Consensus 172 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 172 EDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-----TCSEECHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Confidence 99999999887543 1233346677776655 55555555554432 12246666665543
No 81
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.25 E-value=1.2e-05 Score=72.32 Aligned_cols=152 Identities=19% Similarity=0.245 Sum_probs=95.4
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC--------CCCCeEEEEec----CCCCc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH--------QNEGVVVLGAT----NRRDD 94 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vIatT----n~~~~ 94 (235)
.+...+.|.. ..|+|+||+|+++.+.++.+.+.....+-+.||..+++-. ..++|++|+|. +.|.+
T Consensus 241 ~~~ai~~ae~--~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d 318 (444)
T 1g41_A 241 KQKAIDAVEQ--NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD 318 (444)
T ss_dssp HHHHHHHHHH--HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG
T ss_pred HHHHHHHhcc--CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh
Confidence 3444444432 2599999999998765433223233446788999999741 34679999887 34555
Q ss_pred ccHHhhCCCcccEEEEcCCCCHHHHHHHHH---HHh-----cCc-------cCCCCCHHHHHh-------cCCCCCHHHH
Q psy10044 95 LDKALLRPGRFDIEVNVPPPDYTGRREILD---LYL-----GKI-------VSKNIDVDTLAR-------GTTGFTGADL 152 (235)
Q Consensus 95 ld~al~rpgRf~~~i~i~~P~~~~R~~il~---~~l-----~~~-------~~~~~~l~~la~-------~t~G~s~~di 152 (235)
+-|.|+. ||..+++++.++.++..+|+. .++ ... ...+--+..+++ .|.+.-.+-|
T Consensus 319 lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L 396 (444)
T 1g41_A 319 LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRL 396 (444)
T ss_dssp SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHH
T ss_pred cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHH
Confidence 6688998 999999999999999999994 222 111 111122445554 3566666676
Q ss_pred HHHHHHHHHHHHHc----C--CCCCcHHHHHHHHHH
Q psy10044 153 ENMVNQAALRAAID----G--VPHVTMKYLEYARDK 182 (235)
Q Consensus 153 ~~l~~~A~~~a~~~----~--~~~i~~~~~~~al~~ 182 (235)
+.++......+..+ . .-.||.+.+...+..
T Consensus 397 ~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 397 HTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCc
Confidence 66666555444332 1 123677777765543
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.17 E-value=1.1e-05 Score=69.63 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
...++++.+.+.. ..+.|++|||+|.+.. ...|.|+..++. ...++++|.+||.++.++|++
T Consensus 90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEE--PPAETWFFLATREPERLLATL 155 (334)
T ss_dssp HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHH
Confidence 4567788777753 2368999999999843 235778888874 355788888999999999999
Q ss_pred hCCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCC
Q psy10044 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTG 146 (235)
Q Consensus 100 ~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G 146 (235)
++ |+. .+.|++|+.++...+++... . .++..+..+++.+.|
T Consensus 156 ~S--Rc~-~~~~~~~~~~~~~~~L~~~~-~--~~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 156 RS--RCR-LHYLAPPPEQYAVTWLSREV-T--MSQDALLAALRLSAG 196 (334)
T ss_dssp HT--TSE-EEECCCCCHHHHHHHHHHHC-C--CCHHHHHHHHHHTTT
T ss_pred hh--cce-eeeCCCCCHHHHHHHHHHhc-C--CCHHHHHHHHHHcCC
Confidence 99 874 79999999999999988775 1 122234556666554
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.15 E-value=3.3e-06 Score=78.79 Aligned_cols=131 Identities=24% Similarity=0.260 Sum_probs=88.0
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcC-------------------CCCCCCeEEEEecCCC--Cccc
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG-------------------FHQNEGVVVLGATNRR--DDLD 96 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-------------------~~~~~~v~vIatTn~~--~~ld 96 (235)
.+.+|||||+|.+-. ...+.|+..|+. .....++.||+|||.. +.++
T Consensus 201 ~~gvL~LDEi~~l~~------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp TTSEEEETTGGGSCH------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred CCCEEEEechhhCCH------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 467999999999722 122334443331 0112368899999986 6899
Q ss_pred HHhhCCCccc---EEEEcCCC---CHHHHHHHHHHHhcCc----cCCCCC---HHHHHhc---CCCC------CHHHHHH
Q psy10044 97 KALLRPGRFD---IEVNVPPP---DYTGRREILDLYLGKI----VSKNID---VDTLARG---TTGF------TGADLEN 154 (235)
Q Consensus 97 ~al~rpgRf~---~~i~i~~P---~~~~R~~il~~~l~~~----~~~~~~---l~~la~~---t~G~------s~~di~~ 154 (235)
++|++ ||+ ..+.++.. +.+....+++.+.... ....++ +..|.+. ..|- +.+++.+
T Consensus 269 ~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ 346 (604)
T 3k1j_A 269 PALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGG 346 (604)
T ss_dssp HHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHH
T ss_pred HHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHH
Confidence 99999 997 56776542 3445666665444322 112233 4444442 2553 7999999
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q psy10044 155 MVNQAALRAAIDGVPHVTMKYLEYARDK 182 (235)
Q Consensus 155 l~~~A~~~a~~~~~~~i~~~~~~~al~~ 182 (235)
+++.|...|..++...|+.+|+.+|+..
T Consensus 347 llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 347 IVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 9999998998899999999999999854
No 84
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.12 E-value=1.1e-05 Score=85.89 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=77.0
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHH----h-----------hCCCeEEEEccccccccccCCCCCCccHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAA----K-----------DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTIN 68 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A----~-----------~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~ 68 (235)
+.+++.++++...+ ...+...++.. + ...++|+||||+|.-..++.+ ......++.
T Consensus 1293 ~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg---~q~~lelLR 1363 (2695)
T 4akg_A 1293 LYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG---SQNVVLFLR 1363 (2695)
T ss_dssp SCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSS---CCHHHHHHH
T ss_pred CCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccC---chhHHHHHH
Confidence 45677777765543 23444444433 1 123579999999975444322 223445556
Q ss_pred HHHHHhcCCCC-C-------CCeEEEEecCCCC-----cccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 69 QLLAEMDGFHQ-N-------EGVVVLGATNRRD-----DLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 69 ~ll~~ld~~~~-~-------~~v~vIatTn~~~-----~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
+++. ..++-. . .++.+|||||.|. .|||+++| || ..+.++.|+.+++..|++.++...
T Consensus 1364 q~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1364 QLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp HHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred HHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 6553 223211 1 2589999999994 89999999 99 789999999999999999998654
No 85
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=2.3e-05 Score=67.56 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=76.4
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
.|.|++|||+|.+-. ...+.++..++.. ..+..+|.+||.++.+++++++ |+ ..+.|++|+.+
T Consensus 134 ~~~vlilDE~~~L~~------------~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~ 196 (354)
T 1sxj_E 134 RYKCVIINEANSLTK------------DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDS 196 (354)
T ss_dssp CCEEEEEECTTSSCH------------HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHH
T ss_pred CCeEEEEeCccccCH------------HHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHH
Confidence 577999999999521 1235555555543 3457888899999999999999 88 78999999999
Q ss_pred HHHHHHHHHhcCc--cCC-CCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy10044 118 GRREILDLYLGKI--VSK-NIDVDTLARGTTGFTGADLENMVNQAAL 161 (235)
Q Consensus 118 ~R~~il~~~l~~~--~~~-~~~l~~la~~t~G~s~~di~~l~~~A~~ 161 (235)
+...+++..+... ..+ +..+..+++.+.| +.+++.++++.+..
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 197 EISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999887543 223 4447778876654 55555566655543
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.86 E-value=1.2e-05 Score=82.48 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=62.1
Q ss_pred hhhccH----HHHHHHHHHHHHhhCCCeEEEEccccccccccC---CCC--CCccHHHHHHHHHHHhcCCCCCCCeEEEE
Q psy10044 17 EVLVGQ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT---NSV--LHPYANQTINQLLAEMDGFHQNEGVVVLG 87 (235)
Q Consensus 17 ~~~~g~----~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~---~~~--~~~~~~~~~~~ll~~ld~~~~~~~v~vIa 87 (235)
++|+++ +|+.++.+|..|++.+||+||+|++|+|++.+. ..+ +..-..++++++|.+|+++....+|+||
T Consensus 1135 ~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~- 1213 (1706)
T 3cmw_A 1135 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI- 1213 (1706)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-
T ss_pred HHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-
Confidence 778888 999999999999999999999999999999843 112 1244567899999999998777888888
Q ss_pred ecCCC
Q psy10044 88 ATNRR 92 (235)
Q Consensus 88 tTn~~ 92 (235)
+||+.
T Consensus 1214 ~~n~~ 1218 (1706)
T 3cmw_A 1214 FINQI 1218 (1706)
T ss_dssp EEECE
T ss_pred Eeccc
Confidence 77764
No 87
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=3.4e-05 Score=66.56 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=77.6
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHH
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTG 118 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~ 118 (235)
+.|++|||+|.+... ..+.|+..++.. ...+.+|.+||.+..+.+++++ |+. .+.++.++.++
T Consensus 111 ~~viiiDe~~~l~~~------------~~~~L~~~le~~--~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~ 173 (340)
T 1sxj_C 111 FKLIILDEADAMTNA------------AQNALRRVIERY--TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEA 173 (340)
T ss_dssp CEEEEETTGGGSCHH------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHH
T ss_pred ceEEEEeCCCCCCHH------------HHHHHHHHHhcC--CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHH
Confidence 689999999998431 234566666543 3456777889999999999999 886 78999999999
Q ss_pred HHHHHHHHhcC--ccCCCCCHHHHHhcCCCCCHHHHHHHHHHH---HHHHHHcCCCCCcHHHHHHHH
Q psy10044 119 RREILDLYLGK--IVSKNIDVDTLARGTTGFTGADLENMVNQA---ALRAAIDGVPHVTMKYLEYAR 180 (235)
Q Consensus 119 R~~il~~~l~~--~~~~~~~l~~la~~t~G~s~~di~~l~~~A---~~~a~~~~~~~i~~~~~~~al 180 (235)
..+.++..+.. ...++..+..+++.+ ++|+..+++.. ...+...+...++.+++..++
T Consensus 174 ~~~~l~~~~~~~~~~i~~~~~~~i~~~s----~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 174 IERRIANVLVHEKLKLSPNAEKALIELS----NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp HHHHHHHHHHTTTCCBCHHHHHHHHHHH----TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 99988887743 222222345556544 34444444332 211111122358887776654
No 88
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.83 E-value=2.3e-05 Score=66.90 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=87.5
Q ss_pred CCeeEEeccchhhhhh-----ccH-------HHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVL-----VGQ-------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~-----~g~-------~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+.||+.++|+.+.... +|. ........|+.|. +++|||||+|.+... ....|+
T Consensus 53 ~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~------------~q~~Ll 117 (304)
T 1ojl_A 53 DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL------------MQVRLL 117 (304)
T ss_dssp SSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH------------HHHHHH
T ss_pred CCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH------------HHHHHH
Confidence 5789999998764421 111 0011223455553 479999999998531 334455
Q ss_pred HHhcCCC---------CCCCeEEEEecCCC-------CcccHHhhCCCccc-EEEEcCCCC--HHHHHHHHHHHhcCc--
Q psy10044 72 AEMDGFH---------QNEGVVVLGATNRR-------DDLDKALLRPGRFD-IEVNVPPPD--YTGRREILDLYLGKI-- 130 (235)
Q Consensus 72 ~~ld~~~---------~~~~v~vIatTn~~-------~~ld~al~rpgRf~-~~i~i~~P~--~~~R~~il~~~l~~~-- 130 (235)
..++.-. ...++.+|+|||.. ..+++.|.. ||+ ..|.+|+.. .++...+++.++...
T Consensus 118 ~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~ 195 (304)
T 1ojl_A 118 RAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAE 195 (304)
T ss_dssp HHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHH
Confidence 5555321 12458899999975 235566776 774 335555444 345555777766442
Q ss_pred --c--CCCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy10044 131 --V--SKNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178 (235)
Q Consensus 131 --~--~~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~ 178 (235)
. ...++ +..|....-.-..++|.++++.|...+ ....|+.+++..
T Consensus 196 ~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~~ 247 (304)
T 1ojl_A 196 RNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL---TGEYISERELPL 247 (304)
T ss_dssp HTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSCG
T ss_pred HhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhhh
Confidence 1 11233 444555442235577888888776543 345677776643
No 89
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.82 E-value=9.5e-05 Score=61.28 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=82.7
Q ss_pred CCeeEEeccchhhhhh-----ccHHHH-------HHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVL-----VGQGAR-------RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~-----~g~~~~-------~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+.||+.++|+.+.... .|.... .....|..| .+.+|||||+|.+... ....|+
T Consensus 57 ~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~------------~q~~Ll 121 (265)
T 2bjv_A 57 QGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM------------VQEKLL 121 (265)
T ss_dssp TSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH------------HHHHHH
T ss_pred CCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH------------HHHHHH
Confidence 4689999998864321 111000 011123333 3589999999998531 233444
Q ss_pred HHhcCC---------CCCCCeEEEEecCCC-------CcccHHhhCCCccc-EEEEcCCCCH--HHHHHHHHHHhcCc--
Q psy10044 72 AEMDGF---------HQNEGVVVLGATNRR-------DDLDKALLRPGRFD-IEVNVPPPDY--TGRREILDLYLGKI-- 130 (235)
Q Consensus 72 ~~ld~~---------~~~~~v~vIatTn~~-------~~ld~al~rpgRf~-~~i~i~~P~~--~~R~~il~~~l~~~-- 130 (235)
..++.- ....++.+|+|||.+ ..++++|.. ||+ ..+.+|+... ++...+++.++...
T Consensus 122 ~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~ 199 (265)
T 2bjv_A 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCR 199 (265)
T ss_dssp HHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHH
Confidence 444421 112457899999974 246789998 996 3455554433 34455555555432
Q ss_pred --cC---CCCC---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Q psy10044 131 --VS---KNID---VDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYL 176 (235)
Q Consensus 131 --~~---~~~~---l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~ 176 (235)
.. ..++ +..|....-.-..++|.++++.+...+ ....|+.+|+
T Consensus 200 ~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 200 EIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 11 1233 333444332335678888888876544 2334554444
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=7.6e-05 Score=63.83 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=75.4
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCC----CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRT----PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~----P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~ 79 (235)
+.+|+.+++++ . ..+...++++.+.+.... ..|++|||+|.+.. ...|.|+..|+. +
T Consensus 49 ~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~------------~a~naLLk~LEe--p 109 (305)
T 2gno_A 49 ASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ------------QAANAFLKALEE--P 109 (305)
T ss_dssp TTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH------------HHHHHTHHHHHS--C
T ss_pred CCCEEEEcCCc---C--CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH------------HHHHHHHHHHhC--C
Confidence 45677777642 0 123456788888886432 36999999999842 235778888884 4
Q ss_pred CCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHh
Q psy10044 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127 (235)
Q Consensus 80 ~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l 127 (235)
..++++|.+||.++.+.|++++ | .++|++|+.++-...++..+
T Consensus 110 ~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 110 PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 5677888888999999999999 8 88999999999999888776
No 91
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.29 E-value=0.0013 Score=59.49 Aligned_cols=134 Identities=22% Similarity=0.191 Sum_probs=84.5
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhc-------CCCCCCCeEEEEecCCCC-----------cccHHhhC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD-------GFHQNEGVVVLGATNRRD-----------DLDKALLR 101 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld-------~~~~~~~v~vIatTn~~~-----------~ld~al~r 101 (235)
-++|+||++.+-. .....|+.-|+ |..-+.++.||||+|... .|+++++.
T Consensus 302 Gvl~lDEIn~~~~------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD 369 (506)
T 3f8t_A 302 GILAVDHLEGAPE------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS 369 (506)
T ss_dssp SEEEEECCTTCCH------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred CeeehHhhhhCCH------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence 6999999998732 23444555444 222235689999999765 89999999
Q ss_pred CCcccEEEE-cCCCCHHHH---------HHHHHHHh---c--C--ccCCCCCHHHH---------H--------hcCCCC
Q psy10044 102 PGRFDIEVN-VPPPDYTGR---------REILDLYL---G--K--IVSKNIDVDTL---------A--------RGTTGF 147 (235)
Q Consensus 102 pgRf~~~i~-i~~P~~~~R---------~~il~~~l---~--~--~~~~~~~l~~l---------a--------~~t~G~ 147 (235)
|||..+. ++.|+.+.- .+.++.|. + . ...++.-.+.+ . ...-|.
T Consensus 370 --RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~gi 447 (506)
T 3f8t_A 370 --HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPV 447 (506)
T ss_dssp --TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred --heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccc
Confidence 9987554 456654431 12222222 1 1 00011000001 0 035689
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCc
Q psy10044 148 TGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGP 187 (235)
Q Consensus 148 s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~ 187 (235)
|++.+..+++-|...|..+++..++.+|+..|+.-+..+.
T Consensus 448 SpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 448 TRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987776543
No 92
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.15 E-value=0.0008 Score=50.55 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=52.2
Q ss_pred eeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEE
Q psy10044 6 DTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVV 85 (235)
Q Consensus 6 ~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 85 (235)
+|+.++|+++.+.+ ...+|+.|. +.+|||||+|.+... ....++..++.- .+.++.+
T Consensus 53 ~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~~------------~q~~Ll~~l~~~-~~~~~~i 109 (143)
T 3co5_A 53 PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSRN------------IQTGITFIIGKA-ERCRVRV 109 (143)
T ss_dssp CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCHH------------HHHHHHHHHHHH-TTTTCEE
T ss_pred CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCHH------------HHHHHHHHHHhC-CCCCEEE
Confidence 79999999887654 456677664 589999999998542 122233333321 1456788
Q ss_pred EEecCCC-Cc----ccHHhhCCCcc-cEEEEcCC
Q psy10044 86 LGATNRR-DD----LDKALLRPGRF-DIEVNVPP 113 (235)
Q Consensus 86 IatTn~~-~~----ld~al~rpgRf-~~~i~i~~ 113 (235)
|+|||.+ +. +++.|.. || ...|++|+
T Consensus 110 I~~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 110 IASCSYAAGSDGISCEEKLAG--LFSESVVRIPP 141 (143)
T ss_dssp EEEEEECTTTC--CHHHHHHH--HSSSEEEEECC
T ss_pred EEecCCCHHHHHhCccHHHHH--HhcCcEEeCCC
Confidence 8888864 33 4555655 54 34566654
No 93
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.85 E-value=0.00069 Score=51.00 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=43.3
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCe
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 83 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 83 (235)
+.||+ ++|+.+.+. ......|+.| .+++|||||+|.+... ....++..|.. ...++
T Consensus 52 ~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~~------------~q~~Ll~~l~~--~~~~~ 107 (145)
T 3n70_A 52 QGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTRE------------QQYHLVQLQSQ--EHRPF 107 (145)
T ss_dssp TSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCHH------------HHHHHHHHHHS--SSCSS
T ss_pred CCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCHH------------HHHHHHHHHhh--cCCCE
Confidence 67899 999887654 3345566666 3489999999998432 22345555543 23457
Q ss_pred EEEEecCCC
Q psy10044 84 VVLGATNRR 92 (235)
Q Consensus 84 ~vIatTn~~ 92 (235)
.+|+|||.+
T Consensus 108 ~~I~~t~~~ 116 (145)
T 3n70_A 108 RLIGIGDTS 116 (145)
T ss_dssp CEEEEESSC
T ss_pred EEEEECCcC
Confidence 788899864
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.73 E-value=0.00076 Score=58.08 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=53.6
Q ss_pred CeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeE
Q psy10044 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 84 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 84 (235)
+.|+.+...+.++.+..+.+..++.+++.+.+.. +|+||+++.+..............+.+.+++..|.++..+.++.
T Consensus 151 VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvt 228 (331)
T 2vhj_A 151 DKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCV 228 (331)
T ss_dssp SCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCE
T ss_pred EEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCE
Confidence 3455653333344444566777777887777655 99999999997654321111112344566666666554455678
Q ss_pred EEEecCCCCcccHHh
Q psy10044 85 VLGATNRRDDLDKAL 99 (235)
Q Consensus 85 vIatTn~~~~ld~al 99 (235)
+|++|| +...|+++
T Consensus 229 VIlttn-p~s~deal 242 (331)
T 2vhj_A 229 VIASLN-PTSNDDKI 242 (331)
T ss_dssp EEEECC-CSSCSSSH
T ss_pred EEEEeC-CcccchhH
Confidence 888888 56666654
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.69 E-value=0.0033 Score=50.21 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=52.4
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCCCCH
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDY 116 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~P~~ 116 (235)
..++||+|||++.+++.+.... +. ..++..+.. .....+-+|.+|+.++.||.+++. |++.++.+..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~-----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KI-----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CC-----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccc--hh-----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 3479999999999987653221 11 125555553 234456778888889999999998 9999999988765
Q ss_pred HHH
Q psy10044 117 TGR 119 (235)
Q Consensus 117 ~~R 119 (235)
..|
T Consensus 156 ~~~ 158 (199)
T 2r2a_A 156 GMR 158 (199)
T ss_dssp CCE
T ss_pred Ccc
Confidence 544
No 96
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.47 E-value=0.025 Score=48.37 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhh----CCCeEEEEccccc-cccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC-----CCc
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDS-VGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR-----RDD 94 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~-l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~-----~~~ 94 (235)
..++++++.+.. ...-|++|||+|. +.. ...+.|+..++... ...++|+.+++. ...
T Consensus 59 ~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~------------~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k 125 (343)
T 1jr3_D 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA------------AINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAA 125 (343)
T ss_dssp CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT------------THHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSH
T ss_pred CCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh------------HHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhH
Confidence 445666666643 2357999999987 521 13466777777532 233444444432 346
Q ss_pred ccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q psy10044 95 LDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVT 172 (235)
Q Consensus 95 ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~ 172 (235)
+.+++.+ |. ..+++.+|+.++....++..+... ..++..+..+++.+.| +.+++.+.++..... .+...||
T Consensus 126 ~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It 198 (343)
T 1jr3_D 126 WFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL---WPDGKLT 198 (343)
T ss_dssp HHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEEC
T ss_pred HHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCC
Confidence 8889888 65 478999999999888888877543 1222235667775544 444555544443332 2334688
Q ss_pred HHHHHHHHHHh
Q psy10044 173 MKYLEYARDKV 183 (235)
Q Consensus 173 ~~~~~~al~~~ 183 (235)
.+++...+...
T Consensus 199 ~e~V~~~~~~~ 209 (343)
T 1jr3_D 199 LPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 88877665443
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.97 E-value=0.044 Score=46.25 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=69.6
Q ss_pred HHHHHHHHhhC--CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh--h--
Q psy10044 27 VRDLFKAAKDR--TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL--L-- 100 (235)
Q Consensus 27 i~~~F~~A~~~--~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al--~-- 100 (235)
+..+++..... .|.+|+|||++.+.... +......+..+.... .++.+|.|++....+...+ .
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-----~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~ 192 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLR-----GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDP 192 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCT
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccC-----chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCC
Confidence 45555555443 39999999999986521 111223334443321 3566676766432222210 0
Q ss_pred ---CCCcccEEEEcCCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 101 ---RPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 101 ---rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
-.||+...+++++.+.++-.++++..+........+...+...|.|+.. -+..++.
T Consensus 193 ~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 193 ESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp TSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHH-HHHHHHH
T ss_pred CCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHH-HHHHHHH
Confidence 1347677899999999999999998764321111234778888888644 3444443
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.66 E-value=0.16 Score=54.67 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=88.5
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHH----Hhc---
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLA----EMD--- 75 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~----~ld--- 75 (235)
.|.+++.++|++-++ .+.+..+|..|.+. +++++|||++.+-. ..-.++++.+. .+.
T Consensus 669 lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~---------evLs~l~~~l~~i~~al~~~~ 732 (2695)
T 4akg_A 669 LGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE---------KVLSAVSANIQQIQNGLQVGK 732 (2695)
T ss_dssp TTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH---------HHHHHHHHHHHHHHHHHHHTC
T ss_pred hCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh---------HHHHHHHHHHHHHHHHHHcCC
Confidence 588999999987655 35667888887765 49999999998633 12223322222 111
Q ss_pred ------C--CCCCCCeEEEEecC----CCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHHHhcCccC-----CCCCHH
Q psy10044 76 ------G--FHQNEGVVVLGATN----RRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVS-----KNIDVD 138 (235)
Q Consensus 76 ------~--~~~~~~v~vIatTn----~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~~l~~~~~-----~~~~l~ 138 (235)
| +.-+.+..|++|.| ....||+++++ || +.+.+..|+.+...+|+-...+-... .-+.+-
T Consensus 733 ~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~ 809 (2695)
T 4akg_A 733 SHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFL 809 (2695)
T ss_dssp SEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred cEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 0 11234567888888 45689999999 99 68999999999988886433211000 001111
Q ss_pred HHH-hcCC-----CCCHHHHHHHHHHHHHH
Q psy10044 139 TLA-RGTT-----GFTGADLENMVNQAALR 162 (235)
Q Consensus 139 ~la-~~t~-----G~s~~di~~l~~~A~~~ 162 (235)
.++ +... .|.-+.++.+++.|...
T Consensus 810 ~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 810 ELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 121 1222 37889999988877543
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.19 E-value=0.017 Score=50.59 Aligned_cols=155 Identities=19% Similarity=0.276 Sum_probs=78.8
Q ss_pred CCeeEEeccchhhhhhc-----cHH-------HHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHH
Q psy10044 4 HPDTNHAQGPEFDEVLV-----GQG-------ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~-----g~~-------~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll 71 (235)
+-||+.++|+.+-.... |.. ...-...|+.|. ..+||||||+.+... +...|+
T Consensus 188 ~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~~------------~q~~Ll 252 (387)
T 1ny5_A 188 KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSLE------------AQAKLL 252 (387)
T ss_dssp TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCHH------------HHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCHH------------HHHHHH
Confidence 46899999987644211 100 000112344443 379999999998431 223334
Q ss_pred HHhcC-----CCC----CCCeEEEEecCCCCcccHHhhCCCcc--------c-EEEEcCCCC--HHHHHHHHHHHhcCc-
Q psy10044 72 AEMDG-----FHQ----NEGVVVLGATNRRDDLDKALLRPGRF--------D-IEVNVPPPD--YTGRREILDLYLGKI- 130 (235)
Q Consensus 72 ~~ld~-----~~~----~~~v~vIatTn~~~~ld~al~rpgRf--------~-~~i~i~~P~--~~~R~~il~~~l~~~- 130 (235)
..++. +.. ..++.+|+|||.. +. .+.+.|+| . ..|.+|+.. .++...+++.++...
T Consensus 253 ~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~ 329 (387)
T 1ny5_A 253 RVIESGKFYRLGGRKEIEVNVRILAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFS 329 (387)
T ss_dssp HHHHHSEECCBTCCSBEECCCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcEEeCCCCceeeccEEEEEeCCCC--HH-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHH
Confidence 33331 111 1357899999963 22 22233443 2 334444432 134445556665432
Q ss_pred ---c--CCCCCHHHHHhcC-CCCC--HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy10044 131 ---V--SKNIDVDTLARGT-TGFT--GADLENMVNQAALRAAIDGVPHVTMKYLEYA 179 (235)
Q Consensus 131 ---~--~~~~~l~~la~~t-~G~s--~~di~~l~~~A~~~a~~~~~~~i~~~~~~~a 179 (235)
. ...++-+.+.... ..|. .++|++++++|...+ ....|+.+++-..
T Consensus 330 ~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 330 RKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 1 1123323222221 2344 358888888877643 3356888887544
No 100
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.03 E-value=0.098 Score=43.99 Aligned_cols=115 Identities=14% Similarity=0.031 Sum_probs=63.9
Q ss_pred HhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHH-----hh--CCCccc
Q psy10044 34 AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKA-----LL--RPGRFD 106 (235)
Q Consensus 34 A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~a-----l~--rpgRf~ 106 (235)
+....|.+|+|||++.+...... ........+..++ +.. .++.+|.|+.....++.- .. -.||+.
T Consensus 124 ~~~~~~~vlvlDe~~~~~~~~~~--~~~~~~~~L~~~~---~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~ 195 (350)
T 2qen_A 124 GEELGEFIVAFDEAQYLRFYGSR--GGKELLALFAYAY---DSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIA 195 (350)
T ss_dssp HHHHSCEEEEEETGGGGGGBTTT--TTHHHHHHHHHHH---HHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCC
T ss_pred HhccCCEEEEEeCHHHHhccCcc--chhhHHHHHHHHH---Hhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCcc
Confidence 33334999999999998641100 0111222233332 221 356666665443222221 01 124777
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCc--cCCCCCHHHHHhcCCCCCHHHHHHHHH
Q psy10044 107 IEVNVPPPDYTGRREILDLYLGKI--VSKNIDVDTLARGTTGFTGADLENMVN 157 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~~~l~~~--~~~~~~l~~la~~t~G~s~~di~~l~~ 157 (235)
..+++++.+.++-.++++..+... ......+..+...|.|+. .-+..++.
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 789999999999999998876432 122234667777788764 33444443
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.84 E-value=0.42 Score=52.26 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=57.9
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC-------CCCeEEEEecCCC-----CcccHHhhCCCcccE
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ-------NEGVVVLGATNRR-----DDLDKALLRPGRFDI 107 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~-------~~~v~vIatTn~~-----~~ld~al~rpgRf~~ 107 (235)
.|+|+||++--..+.-+ ......++.+++..-.=+.. -.++.+|||.|.| ..|+++++| ||.
T Consensus 1376 ~VlFiDDiNmp~~D~yG---tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~- 1449 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYG---TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP- 1449 (3245)
T ss_dssp EEEEETTTTCCCCCTTS---CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-
T ss_pred EEEEecccCCCCccccc---cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-
Confidence 69999999863322211 12234455555543111111 1358899999987 469999999 997
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 108 EVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 108 ~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
.+.++.|+.++-..|+..++...
T Consensus 1450 vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHH
Confidence 59999999999999988776543
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.24 E-value=0.12 Score=54.30 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEcccccccccc---CCCCCCcc--HHHHHHHHHHHhcCCCCCCCeEEEEe
Q psy10044 22 QGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR---TNSVLHPY--ANQTINQLLAEMDGFHQNEGVVVLGA 88 (235)
Q Consensus 22 ~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r---~~~~~~~~--~~~~~~~ll~~ld~~~~~~~v~vIat 88 (235)
.+++.++.++..++..+|++|+||+++.+.+.+ +..+++.. ..++++++|.+|.++....++++|.+
T Consensus 1489 ~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1489 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 456888889999999999999999999998753 22222222 46788999999988877777777754
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.94 E-value=0.083 Score=39.75 Aligned_cols=78 Identities=8% Similarity=0.150 Sum_probs=42.0
Q ss_pred CCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC-
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG- 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~- 82 (235)
|...+++++.++... +....|.+|+|||++.+.... ...+-.+++.+. .+..
T Consensus 64 g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~---------~~~l~~li~~~~---~~g~~ 116 (149)
T 2kjq_A 64 GKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE---------QALLFSIFNRFR---NSGKG 116 (149)
T ss_dssp TCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH---------HHHHHHHHHHHH---HHTCC
T ss_pred CCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH---------HHHHHHHHHHHH---HcCCc
Confidence 445666776665543 112358999999998854321 223333333332 1222
Q ss_pred eEEEEecC-CCCccc--HHhhCCCcccEEEEc
Q psy10044 83 VVVLGATN-RRDDLD--KALLRPGRFDIEVNV 111 (235)
Q Consensus 83 v~vIatTn-~~~~ld--~al~rpgRf~~~i~i 111 (235)
+++| ||| .|..+. +.|.+ |+..-..+
T Consensus 117 ~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 117 FLLL-GSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp EEEE-EESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred EEEE-ECCCCHHHccccHHHHH--HHhcCeeE
Confidence 3444 555 455443 88888 87644433
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.84 E-value=0.41 Score=41.49 Aligned_cols=114 Identities=19% Similarity=0.365 Sum_probs=58.3
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhc-----CCCCC----CCeEEEEecCCCCcccHHhh
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD-----GFHQN----EGVVVLGATNRRDDLDKALL 100 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld-----~~~~~----~~v~vIatTn~~~~ld~al~ 100 (235)
.|+.|. ...||||||+.+-.. +...|+..++ .+..+ -++-+|+|||. ++. ...
T Consensus 217 ~~~~a~---~gtlfldei~~l~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~-~~v 278 (368)
T 3dzd_A 217 KLELAD---QGTLFLDEVGELDQR------------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLE-EEI 278 (368)
T ss_dssp HHHHTT---TSEEEEETGGGSCHH------------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHH-HHH
T ss_pred hHhhcC---CCeEEecChhhCCHH------------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHH-HHH
Confidence 345553 368999999998431 2233444433 12111 24778999984 232 222
Q ss_pred CCCccc---------EEEEcCCCCH--HHHHHHHHHHhcCc---cC---CCCC---HHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 101 RPGRFD---------IEVNVPPPDY--TGRREILDLYLGKI---VS---KNID---VDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 101 rpgRf~---------~~i~i~~P~~--~~R~~il~~~l~~~---~~---~~~~---l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
..|+|. ..|++|+... ++...+++.++.+. .. ..++ +..|....--=..++|++++++|.
T Consensus 279 ~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 279 KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 334443 2566666544 55666777777543 11 1233 223333221122366667776665
Q ss_pred H
Q psy10044 161 L 161 (235)
Q Consensus 161 ~ 161 (235)
.
T Consensus 359 ~ 359 (368)
T 3dzd_A 359 I 359 (368)
T ss_dssp H
T ss_pred H
Confidence 4
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.76 E-value=0.033 Score=48.78 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=46.0
Q ss_pred CCCeEEEEcccccccc-ccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCC
Q psy10044 37 RTPCVVFIDEIDSVGA-KRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~-~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~ 113 (235)
....++++||++.+.. .+..... ... .....+...++| .+.|+++||+++.+ +++.+|||++..+....
T Consensus 215 ~q~~~~l~dd~~~~~~~~r~l~~~-~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 215 IDQFLVVFEDVKGTGGESRDLPSG-QGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCSCEEETTCCCSTTTTTTCCCC-SHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred cchhHHHHHHHHHHHHHHhhcccc-Ccc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 3457789999999886 2321111 111 122445555664 35678889999999 79999999998777655
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.37 E-value=0.12 Score=39.61 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=39.5
Q ss_pred CCeeEEeccchhhhhhccHHHHH-HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCC
Q psy10044 4 HPDTNHAQGPEFDEVLVGQGARR-VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~~~~-i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 82 (235)
|...+.++..++.+.+....... ...+++.. ..|.+|+|||++.... +.+....+..++.... ..+
T Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~~-------~~~~~~~l~~ll~~~~----~~~ 133 (180)
T 3ec2_A 67 GIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSERL-------SDWQRELISYIITYRY----NNL 133 (180)
T ss_dssp CCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSCC-------CHHHHHHHHHHHHHHH----HTT
T ss_pred CCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCcC-------CHHHHHHHHHHHHHHH----HcC
Confidence 44556667766665433211110 11122222 2589999999986532 2333445555555432 123
Q ss_pred eEEEEecCCCC
Q psy10044 83 VVVLGATNRRD 93 (235)
Q Consensus 83 v~vIatTn~~~ 93 (235)
..+|.|||.+.
T Consensus 134 ~~ii~tsn~~~ 144 (180)
T 3ec2_A 134 KSTIITTNYSL 144 (180)
T ss_dssp CEEEEECCCCS
T ss_pred CCEEEEcCCCh
Confidence 46667888754
No 107
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.71 E-value=2 Score=37.03 Aligned_cols=106 Identities=11% Similarity=0.015 Sum_probs=65.2
Q ss_pred CeeEEeccchhhhhhccH----HHHHHHHHHHHHhh--CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCC
Q psy10044 5 PDTNHAQGPEFDEVLVGQ----GARRVRDLFKAAKD--RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 78 (235)
Q Consensus 5 ~~~~~v~~s~l~~~~~g~----~~~~i~~~F~~A~~--~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~ 78 (235)
.+++.++.+.+.+..... .-..+..++..+.. ..|.++++||++.++... .......+..++....
T Consensus 223 ~~~vv~dl~~l~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-----~~~~~~~l~~~~~~~R--- 294 (392)
T 4ag6_A 223 SDFIVFDVHDLQNAEDQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVDPQ-----TPQAIAFLRDTSKRIR--- 294 (392)
T ss_dssp SSEEEEECGGGTTSCHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCCTT-----CTHHHHHHHHHHHHGG---
T ss_pred CCEEEEEchhhhcCCHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhCcC-----chHHHHHHHHHHHHhh---
Confidence 456777777776421000 01234445555543 458999999999998632 2223445666666655
Q ss_pred CCCCeEEEEecCCCCcccH--------HhhCCCcccEEEEcCCCCHHHHHHH
Q psy10044 79 QNEGVVVLGATNRRDDLDK--------ALLRPGRFDIEVNVPPPDYTGRREI 122 (235)
Q Consensus 79 ~~~~v~vIatTn~~~~ld~--------al~rpgRf~~~i~i~~P~~~~R~~i 122 (235)
+.++.++.+|..+.++.. +++. ..+..|.++.+. .++..+
T Consensus 295 -k~g~~~~~~tQ~~~d~~~~~~~~~~~~il~--n~~~~i~l~~~~-~~~~~~ 342 (392)
T 4ag6_A 295 -KYNGSLIVISQNVIDFLAPEVQRYGQALLD--NPTYKLLLAQGE-KDLEAI 342 (392)
T ss_dssp -GGTCEEEEEESCGGGGGSTTTHHHHHHHHH--SCSEEEECSCCH-HHHHHH
T ss_pred -hhCeEEEEEcCCHHHhhChhhHHHHHHHHH--hhhhhheeCCCh-hhHHHH
Confidence 445688889999988864 5666 677788888764 344443
No 108
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=86.44 E-value=1.3 Score=40.83 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=55.1
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--cccHHhhCCCcccEEEEcCCCCHH
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD--DLDKALLRPGRFDIEVNVPPPDYT 117 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~--~ld~al~rpgRf~~~i~i~~P~~~ 117 (235)
.+|+|||++.|+.... .. +...+..+-.....-+|.+|.+|.+|. .|+..++. -|...|-+...+..
T Consensus 345 ivvVIDE~~~L~~~~~-----~~----~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KK----VEELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HH----HHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh-----HH----HHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHH
Confidence 6999999999876321 11 223333333334567899999999998 89999988 88899999999988
Q ss_pred HHHHHHH
Q psy10044 118 GRREILD 124 (235)
Q Consensus 118 ~R~~il~ 124 (235)
+-..++.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8877764
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.88 E-value=3.1 Score=45.81 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=70.0
Q ss_pred CCCeeEEeccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHh--------
Q psy10044 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM-------- 74 (235)
Q Consensus 3 s~~~~~~v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~l-------- 74 (235)
.|.+.+.++|++-++ .+.+..+|.-+-+. .+..+|||++.+-. ..-.++.+.+..+
T Consensus 628 lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~---------~vLSvv~~qi~~I~~a~~~~~ 691 (3245)
T 3vkg_A 628 LGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEE---------RILSAVSQQIQTIQVALKENS 691 (3245)
T ss_dssp TTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH---------HHHHHHHHHHHHHHHHHHHTC
T ss_pred hCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCH---------HHHHHHHHHHHHHHHHHHcCC
Confidence 467888889877544 35667788877664 58999999988632 1222222222211
Q ss_pred -----c-C--CCCCCCeEEEEecC----CCCcccHHhhCCCcccEEEEcCCCCHHHHHHHHHH
Q psy10044 75 -----D-G--FHQNEGVVVLGATN----RRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDL 125 (235)
Q Consensus 75 -----d-~--~~~~~~v~vIatTn----~~~~ld~al~rpgRf~~~i~i~~P~~~~R~~il~~ 125 (235)
. | +.-+....+++|.| .-..||++|+. || +.+.+..||.+...+|+-.
T Consensus 692 ~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 692 KEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp SEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHH
T ss_pred CeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHH
Confidence 1 1 12234577888888 34689999999 99 5699999999998888643
No 110
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=79.80 E-value=1.1 Score=34.58 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=26.1
Q ss_pred CCeeEEeccchhhhhhccHH-HHHHHHHHHHHhhCCCeEEEEcccccccc
Q psy10044 4 HPDTNHAQGPEFDEVLVGQG-ARRVRDLFKAAKDRTPCVVFIDEIDSVGA 52 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~~-~~~i~~~F~~A~~~~P~Il~iDeiD~l~~ 52 (235)
+.+++.++++++...+.... ...+..++..... +.+|+|||++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~~ 129 (202)
T 2w58_A 82 NVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEAM 129 (202)
T ss_dssp TCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC--
T ss_pred CCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCcC
Confidence 56778888887766432211 1112333444433 46999999977643
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.66 E-value=21 Score=27.06 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=35.6
Q ss_pred hhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCCcccHHhhCCCccc-EEEEc
Q psy10044 35 KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN--RRDDLDKALLRPGRFD-IEVNV 111 (235)
Q Consensus 35 ~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn--~~~~ld~al~rpgRf~-~~i~i 111 (235)
....|.++++||++-...- + ......+...++. .+..+|.+|. ....+-..+.. |-+ +.+++
T Consensus 96 l~~~p~llilDEigp~~~l------d---~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~--r~~~~i~~~ 160 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELF------S---KKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRR--LPGAVLIEL 160 (178)
T ss_dssp HHCTTCEEEECCCSTTGGG------C---HHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHT--CTTCEEEEC
T ss_pred cccCCCEEEEeCCCCcccC------C---HHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHh--cCCcEEEEe
Confidence 5678999999997643221 1 1233445555553 2333444553 22333345555 432 46777
Q ss_pred CCCCHHH
Q psy10044 112 PPPDYTG 118 (235)
Q Consensus 112 ~~P~~~~ 118 (235)
...+.++
T Consensus 161 ~~~~r~~ 167 (178)
T 1ye8_A 161 TPENRDV 167 (178)
T ss_dssp CTTTTTT
T ss_pred cCcCHHH
Confidence 7666433
No 112
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.93 E-value=1.8 Score=45.54 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhh----CCCeEEEEcccccccc-cc--CCCCCC--ccHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy10044 25 RRVRDLFKAAKD----RTPCVVFIDEIDSVGA-KR--TNSVLH--PYANQTINQLLAEMDGFHQNEGVVVLGATNR 91 (235)
Q Consensus 25 ~~i~~~F~~A~~----~~P~Il~iDeiD~l~~-~r--~~~~~~--~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~ 91 (235)
.++.++++.+++ ..|++|+||.++.+.. .. +..++. .-..+.+++++..|..+....++.||++..-
T Consensus 793 ~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 793 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 345666666654 7899999999999987 32 111111 1224567888888888877777777776543
No 113
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=74.65 E-value=3.8 Score=37.20 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=54.6
Q ss_pred CCe-EEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--cccHHhhCCCcccEEEEcCCC
Q psy10044 38 TPC-VVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD--DLDKALLRPGRFDIEVNVPPP 114 (235)
Q Consensus 38 ~P~-Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~--~ld~al~rpgRf~~~i~i~~P 114 (235)
-|- +|+|||...+.... ..-+..++..+-.....-++.+|.+|.+|. .++..++. -|...|-+...
T Consensus 296 lP~ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~ 364 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV---------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 364 (512)
T ss_dssp CCEEEEEEETHHHHHHHH---------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCS
T ss_pred CCcEEEEEeCHHHHHhhh---------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcC
Confidence 364 89999998876521 111233344333333345788999999987 68988888 88899999999
Q ss_pred CHHHHHHHHHH
Q psy10044 115 DYTGRREILDL 125 (235)
Q Consensus 115 ~~~~R~~il~~ 125 (235)
+..+...++..
T Consensus 365 s~~dsr~ilg~ 375 (512)
T 2ius_A 365 SKIDSRTILDQ 375 (512)
T ss_dssp SHHHHHHHHSS
T ss_pred CHHHHHHhcCC
Confidence 99998888753
No 114
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=69.86 E-value=41 Score=29.03 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=53.4
Q ss_pred CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc--------HHhhCCCcccEE
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD--------KALLRPGRFDIE 108 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld--------~al~rpgRf~~~ 108 (235)
..|.++++||+..++.-. .+..++.... +.++.++.+|-.+.++. .+++. -+...
T Consensus 278 ~~~~~~~lDE~~~l~~~~-----------~l~~~~~~~R----~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~--n~~~~ 340 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA-----------SLADALTKGR----KAGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFRSL 340 (437)
T ss_dssp TCCEEEEESCGGGSCBCS-----------SHHHHHHHCT----TTTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCCEE
T ss_pred CccEEEEEEcccccccch-----------hHHHHHHHHh----ccCCEEEEEecCHHHHHHHHCHHHHHHHHh--ccCcE
Confidence 347999999999987521 2345555544 46789999999988887 46776 78888
Q ss_pred EEcCCC--CHHHHHHHHHHHhcC
Q psy10044 109 VNVPPP--DYTGRREILDLYLGK 129 (235)
Q Consensus 109 i~i~~P--~~~~R~~il~~~l~~ 129 (235)
|.++.. +.+....+ ...++.
T Consensus 341 i~~~~~~~d~~ta~~~-s~~lG~ 362 (437)
T 1e9r_A 341 VVLGGSRTDPKTNEDM-SLSLGE 362 (437)
T ss_dssp EEEECCTTCHHHHHHH-HHHHCE
T ss_pred EEEeCCCCCHHHHHHH-HHHcCc
Confidence 999887 77666654 445544
No 115
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=66.36 E-value=11 Score=24.73 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhh
Q psy10044 151 DLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 151 di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~ 184 (235)
=+..+..+|...|..+++..|+.+|+..|++.+.
T Consensus 38 Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 38 FLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3566777788888889999999999999998763
No 116
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=66.10 E-value=15 Score=26.55 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHh
Q psy10044 146 GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAF 214 (235)
Q Consensus 146 G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~ 214 (235)
.|...-.+.+..+|...+.-.++..|+..+++.|..-+.|| |.. .-|.-|+-.||..+
T Consensus 62 SfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG----------ELa-KhAvseGtkAV~ky 119 (123)
T 2nqb_D 62 SFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPG----------ELA-KHAVSEGTKAVTKY 119 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCH----------HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcH----------HHH-HHHHHHHHHHHhcc
Confidence 35556667888899999988999999999999999999886 333 34777888887664
No 117
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=65.60 E-value=7.3 Score=27.21 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 149 GADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 149 ~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
-.-++.++.+|...+.-.++..|+.+|+..|++++
T Consensus 59 e~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 59 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34567788888888888899999999999999987
No 118
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=64.62 E-value=16 Score=26.50 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHh
Q psy10044 146 GFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAF 214 (235)
Q Consensus 146 G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~ 214 (235)
.|...-.+.+..+|...+.-.++..|+..++..|..-+.|| |.. .-|.-|+-.||..+
T Consensus 65 SfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG----------ELa-KhAvseGtkAV~ky 122 (126)
T 1tzy_B 65 SFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPG----------ELA-KHAVSEGTKAVTKY 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCH----------HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcH----------HHH-HHHHHHHHHHHhcc
Confidence 35556668888899999998999999999999999999886 333 34777888887664
No 119
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=64.52 E-value=9.4 Score=24.78 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 151 DLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 151 di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
-+..++++|...+.-.++..++.+|+..|++
T Consensus 39 r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 39 KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3566777777777777888999999999874
No 120
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=64.02 E-value=32 Score=30.88 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=48.4
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEc-CCCCH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNV-PPPDY 116 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i-~~P~~ 116 (235)
.|.+|+|||++.. ..+ +.+ ..+..||.||........ . +|.. ..+.. +..+.
T Consensus 236 ~~~LLVLDdv~~~------------------~~l---~~l--~~~~~ilvTsR~~~~~~~-~--~~~~-~~v~~l~~L~~ 288 (591)
T 1z6t_A 236 PRSLLILDDVWDS------------------WVL---KAF--DSQCQILLTTRDKSVTDS-V--MGPK-YVVPVESSLGK 288 (591)
T ss_dssp TTCEEEEEEECCH------------------HHH---HTT--CSSCEEEEEESCGGGGTT-C--CSCE-EEEECCSSCCH
T ss_pred CCeEEEEeCCCCH------------------HHH---HHh--cCCCeEEEECCCcHHHHh-c--CCCc-eEeecCCCCCH
Confidence 6899999999752 011 222 234567778875442211 1 1221 22322 45688
Q ss_pred HHHHHHHHHHhcCcc-CCCCCHHHHHhcCCCCC
Q psy10044 117 TGRREILDLYLGKIV-SKNIDVDTLARGTTGFT 148 (235)
Q Consensus 117 ~~R~~il~~~l~~~~-~~~~~l~~la~~t~G~s 148 (235)
++-.++|........ ........+++.|.|.-
T Consensus 289 ~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 289 EKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 888899988875421 12334677888888764
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=63.98 E-value=9 Score=29.91 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=31.3
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCC-ccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~-~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..+.+.+....|.+|+||++-.+....-..... ....+.+..++..+..+....++.||.++......
T Consensus 108 ~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 108 LYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred HHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 4445555666789999999999887542111000 11111234444444333223345666666544433
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=63.44 E-value=12 Score=29.21 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc-----HHh
Q psy10044 25 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD-----KAL 99 (235)
Q Consensus 25 ~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld-----~al 99 (235)
...+.+...+....|.+|++||.-++..... +.......+..++..+.. .++.+|.+|...+... +.+
T Consensus 122 ~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d~~~~~~~l~~l~~~l~~----~g~tii~vtH~~~~~~~~~~~~~i 194 (251)
T 2ehv_A 122 NFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EERKIREVLLKLNTILLE----MGVTTILTTEAPDPQHGKLSRYGI 194 (251)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGGGHHHHHHHHHHHHHH----HCCEEEEEECCC----CCSSSSSC
T ss_pred HHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---CHHHHHHHHHHHHHHHHH----CCCeEEEEECCCCCCcccccccCh
Confidence 3445555556678899999999988765321 122344456666666642 2446677777665542 222
Q ss_pred hCCCcc-cEEEEcC
Q psy10044 100 LRPGRF-DIEVNVP 112 (235)
Q Consensus 100 ~rpgRf-~~~i~i~ 112 (235)
.. -+ |..+.+.
T Consensus 195 ~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 195 EE--FIARGVIVLD 206 (251)
T ss_dssp GG--GGCSEEEEEE
T ss_pred hh--EeeeEEEEEe
Confidence 22 45 7777664
No 123
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=62.08 E-value=9.9 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-+++++.+|...|.-.++..|+.+|+..|++++
T Consensus 61 ~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 61 TFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4456777778877777888999999999999987
No 124
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=61.71 E-value=32 Score=33.65 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCC-CCH
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP-PDY 116 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~-P~~ 116 (235)
.+.+|+||+++.. ..++.+. .+..||.||........ .. .-...++++. .+.
T Consensus 236 ~~~LlvlDd~~~~---------------------~~~~~~~--~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~ 288 (1249)
T 3sfz_A 236 PRSLLILDDVWDP---------------------WVLKAFD--NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGR 288 (1249)
T ss_dssp CSCEEEEESCCCH---------------------HHHTTTC--SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCH
T ss_pred CCEEEEEecCCCH---------------------HHHHhhc--CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCH
Confidence 3899999999853 1223332 34467778876643321 11 2235678875 788
Q ss_pred HHHHHHHHHHhcCccC-CCCCHHHHHhcCCCCC
Q psy10044 117 TGRREILDLYLGKIVS-KNIDVDTLARGTTGFT 148 (235)
Q Consensus 117 ~~R~~il~~~l~~~~~-~~~~l~~la~~t~G~s 148 (235)
++-.++|..+...... ......++++++.|.-
T Consensus 289 ~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 289 EKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp HHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 8888999887744322 1223667888888763
No 125
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=61.30 E-value=9.7 Score=26.55 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-+++++.+|...|.-.++..|+.+|+..|++++
T Consensus 61 ~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 4456777778877777888999999999999987
No 126
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=60.71 E-value=7 Score=26.21 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 148 TGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 148 s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-.-+..++.+|...+.-.++..|+.+|+..|+++.
T Consensus 40 l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 345567788888888888899999999999999876
No 127
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=58.31 E-value=4 Score=34.13 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=24.1
Q ss_pred CCeeEEeccchhhhhhccH-HHHHHHHHHHHHhhCCCeEEEEccccccc
Q psy10044 4 HPDTNHAQGPEFDEVLVGQ-GARRVRDLFKAAKDRTPCVVFIDEIDSVG 51 (235)
Q Consensus 4 ~~~~~~v~~s~l~~~~~g~-~~~~i~~~F~~A~~~~P~Il~iDeiD~l~ 51 (235)
|.+++.+++++|...+.+. ....+...+.... .+.+|+|||++...
T Consensus 181 g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 181 GVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 5667778887776644321 1111222333332 34699999997654
No 128
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=57.04 E-value=12 Score=23.64 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-+..+..+|...|...++..|+.+|+..|++.+
T Consensus 34 ~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 34 EMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4566677778888888899999999999998764
No 129
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=56.96 E-value=38 Score=22.99 Aligned_cols=86 Identities=24% Similarity=0.237 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccE
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDI 107 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~ 107 (235)
.+.++.+....|.++++|-- + +.. + . -.++..+.......+++++.+....+....++. .|-.+
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~--l-~~~-----~--g----~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~-~g~~~- 104 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIA--M-PRM-----N--G----LKLLEHIRNRGDQTPVLVISATENMADIAKALR-LGVED- 104 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC---------------C----HHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHH-HCCSE-
T ss_pred HHHHHHHhcCCCCEEEEecC--C-CCC-----C--H----HHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHH-cCCCE-
Confidence 44555666778999998742 1 110 0 0 123333332223345555544443344444443 34333
Q ss_pred EEEcCCCCHHHHHHHHHHHhcC
Q psy10044 108 EVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 108 ~i~i~~P~~~~R~~il~~~l~~ 129 (235)
.+.-|.-+.++-...++..+.+
T Consensus 105 ~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 105 VLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEESCC---CHHHHHHHHHHC-
T ss_pred EEeCCCCcHHHHHHHHHHHhch
Confidence 3333332566777777776654
No 130
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=55.69 E-value=8.1 Score=30.92 Aligned_cols=27 Identities=30% Similarity=0.101 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCccceEEEe
Q psy10044 201 ITAYHEGGHAVVAFFTKDSENHLTHPITLNL 231 (235)
Q Consensus 201 ~~a~~e~gha~~~~~~~~~~~~~~~~~~~~~ 231 (235)
....||.||++++...+-.. .++++.|
T Consensus 50 ~v~~HElgH~~~A~~~G~~~----~~i~l~p 76 (224)
T 3b4r_A 50 SVVLHELGHSYVAKKYGVKI----EKILLLP 76 (224)
T ss_dssp HHHHHHHHHHHHHHHHHCCC----CCEEECS
T ss_pred HHHHHHHHHHHHHHHcCCcc----ccEEEEE
Confidence 45689999999999887654 3355555
No 131
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=54.67 E-value=24 Score=22.68 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
|...-...+..+|...|.-.|+..|+.+|+.-|++..
T Consensus 30 ~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 30 FTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 5566777788888888887899999999999998754
No 132
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=54.25 E-value=5.3 Score=29.92 Aligned_cols=12 Identities=50% Similarity=0.623 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 109 ~~v~~HEiGHaL 120 (160)
T 2jsd_A 109 FTVAAHEFGHAL 120 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhHhhh
Confidence 457999999997
No 133
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=53.75 E-value=5.4 Score=30.18 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 116 ~~v~~HEiGHaL 127 (167)
T 2xs4_A 116 ITVAAHEIGHLL 127 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHhh
Confidence 457999999997
No 134
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=52.83 E-value=26 Score=30.01 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=33.5
Q ss_pred HHHhhCCCeEEEEccccccccccCCC---CCC--ccHHHHHHHHHHHhcCCCCCCCeEEEEec
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNS---VLH--PYANQTINQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~---~~~--~~~~~~~~~ll~~ld~~~~~~~v~vIatT 89 (235)
...+...+.+|+||.+..+....... ++. ....+.+.+++..|..+....++.||++.
T Consensus 146 ~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 34445678999999999998532211 110 01224566777776655445566666553
No 135
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=52.48 E-value=4.8 Score=30.34 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 112 ~~va~HEiGHaL 123 (159)
T 2ovx_A 112 FLVAAHQFGHAL 123 (159)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhhhhhhhhh
Confidence 457999999997
No 136
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=52.20 E-value=12 Score=28.58 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.6
Q ss_pred CCeEEEEccccccccc
Q psy10044 38 TPCVVFIDEIDSVGAK 53 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~ 53 (235)
.|.+|+|||+..+...
T Consensus 105 ~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 105 NFALVVVDSITAHYRA 120 (220)
T ss_dssp TEEEEEEECCCCCTTG
T ss_pred CCCEEEEcCcHHHhhh
Confidence 5899999999998643
No 137
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=51.34 E-value=6.2 Score=30.08 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 114 ~~v~~HEiGHaL 125 (173)
T 1hy7_A 114 FLVAAHEIGHSL 125 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHhh
Confidence 457999999997
No 138
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=49.33 E-value=20 Score=27.04 Aligned_cols=36 Identities=25% Similarity=0.100 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCC
Q psy10044 151 DLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186 (235)
Q Consensus 151 di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~ 186 (235)
-+..+..+|...|...++..|+.+|+..|++...|-
T Consensus 115 f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 115 ATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 455666778888888899999999999999998763
No 139
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=48.91 E-value=29 Score=23.46 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 151 DLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 151 di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
=|..+..+|...|...++..|+.+|+..|++++-+
T Consensus 43 Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 43 FISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 34556666777788889999999999999986633
No 140
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=48.78 E-value=69 Score=24.79 Aligned_cols=57 Identities=25% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhCCcccCCCCCchhhhHHHHHHHHHHHHHHh
Q psy10044 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAF 214 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~~~~~~~~~~~~e~~~~~a~~e~gha~~~~ 214 (235)
|...-+..++.+|...+...++..+|..|++.|...+.++ +. ...+.-|++.|+-..
T Consensus 33 ~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpg----------eL-ak~Av~eG~kAv~k~ 89 (192)
T 2jss_A 33 FVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPG----------EL-AKHAVSEGTRAVTKY 89 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCS----------HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----------HH-HHHHHHHHHHHHHhh
Confidence 5556677888888888877888899999999999988776 22 234677777777543
No 141
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=47.30 E-value=6.4 Score=29.87 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 112 ~~v~~HEiGHaL 123 (168)
T 1cge_A 112 HRVAAHELGHSL 123 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhhhHhHhhh
Confidence 457999999997
No 142
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=46.65 E-value=32 Score=24.79 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 150 ~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-+++++++|...+--.++..|+.+|+.-|++++
T Consensus 79 ~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~ 112 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhC
Confidence 3345666677777777789999999999999887
No 143
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=46.51 E-value=54 Score=24.84 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhCCCe--EEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy10044 26 RVRDLFKAAKDRTPC--VVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR 92 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~--Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~ 92 (235)
..+.+...+....|. +|++||...+.... ......++..+..... ..++.+|.+|...
T Consensus 109 ~~~~~~~~~~~~~~~~~llilDe~~~~~~~d-----~~~~~~~~~~l~~~~~----~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 109 LVNKVIEAKQKLGYGKARLVIDSVSALFLDK-----PAMARKISYYLKRVLN----KWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEETGGGGSSSC-----GGGHHHHHHHHHHHHH----HTTEEEEEEEC--
T ss_pred HHHHHHHHHHhhCCCceEEEEECchHhhcCC-----HHHHHHHHHHHHHHHH----hCCCeEEEEeccC
Confidence 334444555566788 99999999885321 1122333333333222 2345667677654
No 144
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=46.05 E-value=66 Score=21.68 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=41.3
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCcccHHhhCCCccc
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR-RDDLDKALLRPGRFD 106 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~-~~~ld~al~rpgRf~ 106 (235)
.+.++.+....|.++++|-- .+.. + . ..++..+..........+|.++.. .+.+..++ +.|-.+
T Consensus 40 ~~a~~~l~~~~~dlii~d~~---l~~~-----~--g----~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~-~~g~~~ 104 (132)
T 3lte_A 40 FDAGIKLSTFEPAIMTLDLS---MPKL-----D--G----LDVIRSLRQNKVANQPKILVVSGLDKAKLQQAV-TEGADD 104 (132)
T ss_dssp HHHHHHHHHTCCSEEEEESC---BTTB-----C--H----HHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHH-HHTCCE
T ss_pred HHHHHHHHhcCCCEEEEecC---CCCC-----C--H----HHHHHHHHhcCccCCCeEEEEeCCChHHHHHHH-HhChHH
Confidence 44555667788999998752 1110 1 1 234555544332122334444443 33333333 334333
Q ss_pred EEEEcCCC-CHHHHHHHHHHHhcC
Q psy10044 107 IEVNVPPP-DYTGRREILDLYLGK 129 (235)
Q Consensus 107 ~~i~i~~P-~~~~R~~il~~~l~~ 129 (235)
++..| +.++-...++.+...
T Consensus 105 ---~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 105 ---YLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp ---EECSSCCHHHHHHHHHHHHC-
T ss_pred ---HhhCCCCHHHHHHHHHHHcCC
Confidence 34444 777777777776654
No 145
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=45.59 E-value=48 Score=26.58 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=30.9
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.+|++||-=+- -+......+..++..+. .. +..||.+|.+.+.+.
T Consensus 164 iAraL~~~p~lllLDEPts~--------LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAG--------VAPGLAHDIFNHVLELK---AK-GITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTT--------CCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTTG
T ss_pred HHHHHHcCCCEEEEeCCccC--------CCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 34455678999999994331 12233444455555543 12 346677887766543
No 146
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=45.08 E-value=69 Score=25.71 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=29.7
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.|+++||--+-. +......+..++..+. . +..+|.+|.+++.+
T Consensus 166 lAraL~~~p~lllLDEPts~L--------D~~~~~~i~~~l~~l~---~--~~tviivtH~~~~~ 217 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEATSSL--------DSKTEYLFQKAVEDLR---K--NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHCCSEEEEECCCCTT--------CHHHHHHHHHHHHHHT---T--TSEEEEECSSGGGS
T ss_pred HHHHHHcCCCEEEEECccccC--------CHHHHHHHHHHHHHhc---C--CCEEEEEcCCHHHH
Confidence 445555679999999953322 2233444555555553 2 23566677766543
No 147
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=44.61 E-value=16 Score=31.16 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCeEEEEcccccccc
Q psy10044 26 RVRDLFKAAKDRTPCVVFIDEIDSVGA 52 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~Il~iDeiD~l~~ 52 (235)
.+..+...++...|.+|+||++.++..
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 333344455567799999999999985
No 148
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=44.59 E-value=21 Score=22.75 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q psy10044 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181 (235)
Q Consensus 147 ~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~ 181 (235)
+.-.-+..+..+|...|.-.++..|+.+|+..|++
T Consensus 35 ~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 35 YLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 55566778888888888888999999999998874
No 149
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=44.18 E-value=7.6 Score=29.30 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 114 ~~v~~HEiGHaL 125 (165)
T 1hv5_A 114 LQVAAHEFGHVL 125 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhHHHHhHhhh
Confidence 457999999997
No 150
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.17 E-value=91 Score=24.75 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.+|++||--+-+ +......+..++..+. . +..+|.+|.+++.+
T Consensus 155 ~iAraL~~~p~lllLDEPts~L--------D~~~~~~i~~~l~~~~---~--g~tviivtH~~~~~ 207 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSAL--------DYESEHVIMRNMHKIC---K--GRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCC--------CHHHHHHHHHHHHHHH---T--TSEEEEECSSGGGG
T ss_pred HHHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHc---C--CCEEEEEeCCHHHH
Confidence 3455556789999999953322 2233444555555553 1 23566677765543
No 151
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=42.70 E-value=54 Score=26.44 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 29 DLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 29 ~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
-.+..|-...|.++++||--+=+ +......+..++..+. .. +..||.+|.+++.+.
T Consensus 147 v~lAraL~~~p~lllLDEPts~L--------D~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGL--------DREGKTDLLRIVEKWK---TL-GKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTC--------CHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTTG
T ss_pred HHHHHHHHcCCCEEEEcCccccC--------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 34456666789999999953322 2233444445555542 12 346667888766543
No 152
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=42.58 E-value=10 Score=28.54 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 113 ~~v~~HE~GHal 124 (163)
T 1i76_A 113 FLVAAHEFGHSL 124 (163)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHhhhhh
Confidence 457999999997
No 153
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=42.35 E-value=50 Score=26.36 Aligned_cols=53 Identities=19% Similarity=0.043 Sum_probs=30.1
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
+..|-...|.+|++||--+-+ +......+..++..+. . .+..+|.+|.+++.+
T Consensus 154 iAraL~~~p~lllLDEPts~L--------D~~~~~~l~~~l~~l~---~-~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGL--------DIDALKVVARGVNAMR---G-PNFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTT--------CHHHHHHHHHHHHHHC---S-TTCEEEEECSSSGGG
T ss_pred HHHHHHcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHHH---h-cCCEEEEEecCHHHH
Confidence 344555679999999954422 2233444455555553 2 234666678776544
No 154
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.85 E-value=48 Score=26.91 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
.+..|-...|.+|++||--+-+ +......+..++..+. ...+..||.+|.+++
T Consensus 166 ~lAraL~~~p~lllLDEPts~L--------D~~~~~~i~~~l~~~~---~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSAL--------DAGNQLRVQRLLYESP---EWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTC--------CHHHHHHHHHHHHHCT---TTTTSEEEEECSCHH
T ss_pred HHHHHHhcCCCEEEEECCccCC--------CHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHH
Confidence 3455566789999999954322 2223334444444432 222345666776544
No 155
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=41.19 E-value=32 Score=24.28 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 112 PPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 112 ~~P~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
.+|...-|+ |++.+-......+ -...+.+ +.-.-+..++.+|...|.-.++..|+.+|+..|+++.-.
T Consensus 7 ~lP~a~I~R-i~r~~g~~rIS~~-a~~~l~e----~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 7 EIASSLIKQ-IFSHYVKTPVTRD-AYKIVEK----CSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp ---CHHHHH-HHHHHHCSCBCHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCHHHHHH-HHHHCCCCccCHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 345554444 6666632221111 1333333 445566778888888888889999999999999999743
No 156
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=40.92 E-value=20 Score=37.37 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=53.7
Q ss_pred eccchhhhhhccHHHHHHHHHHHHHhhCCCeEEEEccccccccccCCC---CCC--ccHHHHHHHHHHHhcCCCCCCCeE
Q psy10044 10 AQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS---VLH--PYANQTINQLLAEMDGFHQNEGVV 84 (235)
Q Consensus 10 v~~s~l~~~~~g~~~~~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~---~~~--~~~~~~~~~ll~~ld~~~~~~~v~ 84 (235)
|+..+|+-.+...+|..+..+...++..+|++|++|-+.++.++..-. +++ .-..+++++.|..|.+.-.+.++.
T Consensus 1481 v~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~ 1560 (1706)
T 3cmw_A 1481 VDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 1560 (1706)
T ss_dssp CCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcE
Confidence 334445555677779999999999999999999999999999875422 111 123455666666666554445556
Q ss_pred EEEec
Q psy10044 85 VLGAT 89 (235)
Q Consensus 85 vIatT 89 (235)
+|.+.
T Consensus 1561 ~i~~~ 1565 (1706)
T 3cmw_A 1561 LIFIN 1565 (1706)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 66553
No 157
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=40.83 E-value=57 Score=27.85 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcccccccccc---CCCCCCc--cHHHHHHHHHHHhcCCCCCCCeEEEEe
Q psy10044 26 RVRDLFKAAKDRTPCVVFIDEIDSVGAKR---TNSVLHP--YANQTINQLLAEMDGFHQNEGVVVLGA 88 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~Il~iDeiD~l~~~r---~~~~~~~--~~~~~~~~ll~~ld~~~~~~~v~vIat 88 (235)
.+..+-...+...|.+++||.+-.+++.. +..++.. ...+.+.+++..|..+....++.||.+
T Consensus 127 ~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 127 ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 33333334455789999999999998621 1111111 234566677776666644455555544
No 158
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=39.55 E-value=72 Score=25.76 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=29.2
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+=+ +......+..++..+. . .+|.+|.+++.+
T Consensus 138 ~lAraL~~~p~lllLDEPts~L--------D~~~~~~l~~~L~~~~---~----tviivtHd~~~~ 188 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENV--------DAARRHVISRYIKEYG---K----EGILVTHELDML 188 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTC--------CHHHHHHHHHHHHHSC---S----EEEEEESCGGGG
T ss_pred HHHHHHHhCCCEEEEECCcccc--------CHHHHHHHHHHHHHhc---C----cEEEEEcCHHHH
Confidence 4456666789999999943321 2233444444554443 2 566677765543
No 159
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=39.41 E-value=14 Score=30.78 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=35.9
Q ss_pred HHHHHHHHHhh-CCCeEEEEccccccccccCCCCCC-ccHHHHHHHHHHHhcCCCCCCCeEEEEec
Q psy10044 26 RVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 26 ~i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~-~~~~~~~~~ll~~ld~~~~~~~v~vIatT 89 (235)
.+..+...++. ..|.+|+||.+..+........+. ......+..++..+..+....++.||.+.
T Consensus 190 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 190 IVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 34455555666 779999999999997542211111 11123456666666555434455555553
No 160
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=39.17 E-value=95 Score=23.55 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=11.9
Q ss_pred hCCCeEEEEcccccc
Q psy10044 36 DRTPCVVFIDEIDSV 50 (235)
Q Consensus 36 ~~~P~Il~iDeiD~l 50 (235)
...|.|+++||++.+
T Consensus 103 ~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKM 117 (189)
T ss_dssp SSCCCCEEECCCSTT
T ss_pred ccCCCEEEEeCCCcc
Confidence 466899999997554
No 161
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=39.16 E-value=9.9 Score=31.05 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 196 ~~va~HEiGHaL 207 (255)
T 1slm_A 196 FLVAAHEIGHSL 207 (255)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhHHHHHHHh
Confidence 568999999997
No 162
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=39.14 E-value=43 Score=26.22 Aligned_cols=54 Identities=6% Similarity=-0.018 Sum_probs=29.5
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
.+..|-...|.++++||--+-. +......+..++..+.. . +..+|.+|..++.+
T Consensus 143 ~laraL~~~p~lllLDEPts~L--------D~~~~~~l~~~l~~~~~---~-g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAI--------DEDSKHKVLKSILEILK---E-KGIVIISSREELSY 196 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTS--------CTTTHHHHHHHHHHHHH---H-HSEEEEEESSCCTT
T ss_pred HHHHHHHhCCCEEEEECCCcCC--------CHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHHHH
Confidence 3445566779999999954422 22233344444444431 1 23555677766544
No 163
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=37.29 E-value=97 Score=21.10 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHhcCc
Q psy10044 112 PPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 112 ~~P~~~~R~~il~~~l~~~ 130 (235)
.+-+.++-...++.++...
T Consensus 122 KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 122 KPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp SSCCHHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 3447788888888777543
No 164
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=37.22 E-value=1e+02 Score=21.38 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=42.1
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCccc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFD 106 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~ 106 (235)
..+.++.+....|.+|++|-- + .. .+ .. .++..+.......+++++.+....+..-.++ +.|-.+
T Consensus 55 ~~~al~~l~~~~~dlii~D~~--l-~~-----~~--g~----~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~ 119 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVE--M-PV-----KT--GL----EVLEWIRSEKLETKVVVVTTFKRAGYFERAV-KAGVDA 119 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSS--C-SS-----SC--HH----HHHHHHHHTTCSCEEEEEESCCCHHHHHHHH-HTTCSE
T ss_pred HHHHHHHhhccCCCEEEEeCC--C-CC-----Cc--HH----HHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH-HCCCcE
Confidence 445666677788999998841 1 10 01 11 2333333222233344443333333444444 444433
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCc
Q psy10044 107 IEVNVPPPDYTGRREILDLYLGKI 130 (235)
Q Consensus 107 ~~i~i~~P~~~~R~~il~~~l~~~ 130 (235)
.+. .+-+.++-...++..+.+.
T Consensus 120 -~l~-Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 120 -YVL-KERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp -EEE-TTSCHHHHHHHHHHHHTTC
T ss_pred -EEe-cCCCHHHHHHHHHHHHcCC
Confidence 232 2337777777777777543
No 165
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.03 E-value=40 Score=27.19 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD 94 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ 94 (235)
.+..|-...|.++++||--+= -+......+..++..+. .. +..||.+|..++.
T Consensus 156 ~lAraL~~~p~lllLDEPts~--------LD~~~~~~l~~~l~~l~---~~-g~tiiivtHd~~~ 208 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSG--------LDVLNAREVRKILKQAS---QE-GLTILVSSHNMLE 208 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTT--------CCHHHHHHHHHHHHHHH---HT-TCEEEEEECCHHH
T ss_pred HHHHHHHcCCCEEEEeCCccc--------cCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHH
Confidence 344555677999999994332 12333444555555543 12 3356667765443
No 166
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=36.71 E-value=1.1e+02 Score=21.59 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=38.3
Q ss_pred HHHHHHHhhC--CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcc
Q psy10044 28 RDLFKAAKDR--TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRF 105 (235)
Q Consensus 28 ~~~F~~A~~~--~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf 105 (235)
.+.++.+... .|.+|++|-- ... .+ .. .++..+......-+|+++......+.+..++. .|-.
T Consensus 71 ~~al~~l~~~~~~~dliilD~~---l~~-----~~--g~----~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~-~g~~ 135 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXIT---MPK-----MD--GI----TCLSNIMEFDKNARVIMISALGKEQLVKDCLI-KGAK 135 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSS---CSS-----SC--HH----HHHHHHHHHCTTCCEEEEESCCCHHHHHHHHH-TTCS
T ss_pred HHHHHHHHhcCCCCCEEEEecc---CCC-----cc--HH----HHHHHHHhhCCCCcEEEEeccCcHHHHHHHHH-cCCC
Confidence 3444455555 6788888752 110 01 12 23333332223345555544444444444443 3443
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhc
Q psy10044 106 DIEVNVPPPDYTGRREILDLYLG 128 (235)
Q Consensus 106 ~~~i~i~~P~~~~R~~il~~~l~ 128 (235)
+ .+. .+-+.++-...++..+.
T Consensus 136 ~-~l~-KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 136 T-FIV-KPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp E-EEE-SSCCHHHHHHHHHHTTC
T ss_pred E-EEe-CCCCHHHHHHHHHHHhc
Confidence 3 222 23366666666665543
No 167
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=36.56 E-value=79 Score=24.92 Aligned_cols=19 Identities=11% Similarity=0.002 Sum_probs=13.8
Q ss_pred HHHHHhhCCCeEEEEcccc
Q psy10044 30 LFKAAKDRTPCVVFIDEID 48 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD 48 (235)
.+..|-...|.++++||--
T Consensus 137 ~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp HHHHHHHHCCSEEEEESTT
T ss_pred HHHHHHhcCCCEEEEeCcc
Confidence 3455556779999999953
No 168
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=35.82 E-value=27 Score=30.40 Aligned_cols=66 Identities=6% Similarity=0.079 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCeEEEEccccccccccCCC-CCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy10044 26 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS-VLHPYANQTINQLLAEMDGFHQNEGVVVLGATNR 91 (235)
Q Consensus 26 ~i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~-~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~ 91 (235)
.+..+...+....|.+|+||++-.++...... +.-....+.+..++..+..+....++.||.++..
T Consensus 261 ~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 261 LLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 34444555566789999999999887643221 1111122344555555555544445566666554
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=35.01 E-value=14 Score=28.43 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=33.7
Q ss_pred hCCCeEEEEccccccccccCCCCCC-ccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCC
Q psy10044 36 DRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 36 ~~~P~Il~iDeiD~l~~~r~~~~~~-~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~ 113 (235)
...|.+|++||.-+..........+ ....+.+..++..+..+....++.||.+|...+. +..+.. .-.|..+.+..
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~-~g~~~~-~~~d~~l~l~~ 199 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN-GGHILA-HSATLRVYLRK 199 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSEEEEEEE
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC-cchhhH-hhceEEEEEEe
Confidence 6689999999998875443221111 1111112333333333322334566667664444 222222 03455555544
No 170
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=34.84 E-value=47 Score=26.90 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=29.9
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD 94 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ 94 (235)
.+..|-...|.+|++||--+- -+......+..++..+. .. +..||.+|.+.+.
T Consensus 169 ~lAraL~~~p~lllLDEPts~--------LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSA--------LDPEMVGEVLSVMKQLA---NE-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTT--------SCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHH
T ss_pred HHHHHHHCCCCEEEEeCCccc--------CCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHH
Confidence 344555677999999994332 12233444455555542 12 3466677776544
No 171
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=34.68 E-value=43 Score=25.32 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEec-C---CCCcccHHhhCCCcccEEEEcCC
Q psy10044 38 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGAT-N---RRDDLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatT-n---~~~~ld~al~rpgRf~~~i~i~~ 113 (235)
.+.+|+|||+..+-. . ++..+....+. +..|++.|.+ | .+....+.|+. +.|...++..
T Consensus 76 ~~dvviIDE~Q~~~~---------~---~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~--~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP---------S---LFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLS--LADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGGSCT---------T---HHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHH--HCSEEEECCB
T ss_pred CCCEEEEECcccCCH---------H---HHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHH--HhhheEEeee
Confidence 467999999987621 1 22222223332 2334444443 2 45567788887 8887777654
No 172
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=34.38 E-value=39 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=27.4
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
.+|++||+|.+.... .....+..++..+. .+.+++.+ |+..++.+...+.+
T Consensus 168 ~~lViDEah~~~~~~-------~~~~~~~~i~~~~~---~~~~~l~l-SAT~~~~~~~~~~~ 218 (230)
T 2oxc_A 168 RLFILDEADKLLEEG-------SFQEQINWIYSSLP---ASKQMLAV-SATYPEFLANALTK 218 (230)
T ss_dssp CEEEESSHHHHHSTT-------SSHHHHHHHHHHSC---SSCEEEEE-ESCCCHHHHHHHTT
T ss_pred CEEEeCCchHhhcCc-------chHHHHHHHHHhCC---CCCeEEEE-EeccCHHHHHHHHH
Confidence 589999999986531 12334455555543 23334444 44455555444444
No 173
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=34.08 E-value=14 Score=28.00 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 115 ~~~~~HE~gH~l 126 (167)
T 3ayu_A 115 FLVAAHAFGHAM 126 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred eeehhhhhHHhc
Confidence 357999999997
No 174
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=33.77 E-value=14 Score=27.67 Aligned_cols=12 Identities=50% Similarity=0.800 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 109 ~~~~~HE~GH~l 120 (159)
T 1y93_A 109 FLTAVHEIGHSL 120 (159)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhhhhhhhhh
Confidence 457999999997
No 175
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=33.48 E-value=39 Score=23.04 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 153 ENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 153 ~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
..++..|...|...++..|+.+|+..|+...
T Consensus 55 ~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 55 TELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 4556667777777788899999999998654
No 176
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=33.42 E-value=18 Score=27.59 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 116 ~~~~~HE~gH~l 127 (174)
T 2y6d_A 116 LYAATHELGHSL 127 (174)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehhhHHhHhhh
Confidence 357999999997
No 177
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=32.72 E-value=97 Score=23.69 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 75 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld 75 (235)
+..+-+.++...|.++++|++..+... +.......+..+...+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~-----~~~~~~~~l~~l~~~~~ 160 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYIN-----KPAMARSIILQLKRVLA 160 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTT-----CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcC-----CHHHHHHHHHHHHHHHH
Confidence 333434445567899999999998631 11233455555555543
No 178
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=32.65 E-value=1.1e+02 Score=22.95 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=19.6
Q ss_pred hccHHHHHHHHHHHHHhh--CCCeEEEEccccccc
Q psy10044 19 LVGQGARRVRDLFKAAKD--RTPCVVFIDEIDSVG 51 (235)
Q Consensus 19 ~~g~~~~~i~~~F~~A~~--~~P~Il~iDeiD~l~ 51 (235)
..|.-.+++.-.+..|.. ..|.++++||.++-+
T Consensus 65 LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~L 99 (173)
T 3kta_B 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHL 99 (173)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCC
Confidence 344444444444444433 345799999998755
No 179
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=32.31 E-value=17 Score=32.40 Aligned_cols=12 Identities=50% Similarity=0.462 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 171 ~~va~HEiGHaL 182 (471)
T 1sat_A 171 RQTFTHEIGHAL 182 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred ceeeeeeccccc
Confidence 467999999998
No 180
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=32.06 E-value=54 Score=25.66 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRR 92 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~ 92 (235)
.+..|-...|.++++||--+-. +......+..++..+. .. +..||.+|.+.
T Consensus 150 ~laral~~~p~lllLDEPt~~L--------D~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~ 200 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNL--------DSANTKRVMDIFLKIN---EG-GTSIVMVTHER 200 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTC--------CHHHHHHHHHHHHHHH---HT-TCEEEEECSCH
T ss_pred HHHHHHHcCCCEEEEeCCCCCC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEcCCH
Confidence 3445556779999999953321 2233444444555442 12 34566677653
No 181
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=32.02 E-value=41 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 152 LENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 152 i~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
+..++..|...|...++..|+.+|+..|+...
T Consensus 76 i~~L~~~A~~~a~~~krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 76 ITELTMRAWIHAEDNKRRTLQRSDIAAALSKS 107 (119)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccCccCHHHHHHHHhcC
Confidence 35566677777788888999999999998654
No 182
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=31.91 E-value=46 Score=26.82 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD 94 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ 94 (235)
.+..|-...|.+|++||--+= -+......+..++..+. .. +..||.+|.+.+.
T Consensus 163 ~lAraL~~~p~lllLDEPts~--------LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSA--------LDPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTT--------SCHHHHHHHHHHHHHHH---HT-TCCEEEECSCHHH
T ss_pred HHHHHHhcCCCEEEEeCCCcc--------CCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHH
Confidence 344555678999999994331 12233444455555543 12 3355667776543
No 183
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=31.87 E-value=59 Score=25.67 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=35.3
Q ss_pred HHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecC------CCCcccHH
Q psy10044 29 DLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATN------RRDDLDKA 98 (235)
Q Consensus 29 ~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn------~~~~ld~a 98 (235)
++++.++. ..|.+|+|||+..|.. .++. ++..+.. . ++-||.+.. .|..-.+.
T Consensus 76 ~i~~~i~~~~~~~~~dvViIDEaQ~l~~------------~~ve-~l~~L~~--~--gi~Vil~Gl~~df~~~~F~~~~~ 138 (223)
T 2b8t_A 76 EILNYIMSNSFNDETKVIGIDEVQFFDD------------RICE-VANILAE--N--GFVVIISGLDKNFKGEPFGPIAK 138 (223)
T ss_dssp HHHHHHHSTTSCTTCCEEEECSGGGSCT------------HHHH-HHHHHHH--T--TCEEEEECCSBCTTSSBCTTHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEecCccCcH------------HHHH-HHHHHHh--C--CCeEEEEeccccccCCcCCCcHH
Confidence 45555554 3488999999986531 1222 2233221 1 234444443 34455567
Q ss_pred hhCCCcccEEEEcC
Q psy10044 99 LLRPGRFDIEVNVP 112 (235)
Q Consensus 99 l~rpgRf~~~i~i~ 112 (235)
|+- .-|...++.
T Consensus 139 Ll~--lAD~V~el~ 150 (223)
T 2b8t_A 139 LFT--YADKITKLT 150 (223)
T ss_dssp HHH--HCSEEEECC
T ss_pred HHH--HhheEeecc
Confidence 776 667777764
No 184
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=31.86 E-value=1.5e+02 Score=22.89 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhh----CCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHh
Q psy10044 24 ARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKAL 99 (235)
Q Consensus 24 ~~~i~~~F~~A~~----~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al 99 (235)
+...+..++.+++ ....+|++||+=....-.-- -...++..+.. ...+.-||.|+|.+ +++|
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l---------~~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l 167 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL---------PLEEVISALNA--RPGHQTVIITGRGC---HRDI 167 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS---------CHHHHHHHHHT--SCTTCEEEEECSSC---CHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC---------CHHHHHHHHHh--CcCCCEEEEECCCC---cHHH
Confidence 4556666766655 34689999998442211100 01334555542 34567888899874 6788
Q ss_pred hCCCcccEEEEcC
Q psy10044 100 LRPGRFDIEVNVP 112 (235)
Q Consensus 100 ~rpgRf~~~i~i~ 112 (235)
+- .-|.+-++.
T Consensus 168 ~e--~AD~VTem~ 178 (196)
T 1g5t_A 168 LD--LADTVSELR 178 (196)
T ss_dssp HH--HCSEEEECC
T ss_pred HH--hCcceeeec
Confidence 87 778777764
No 185
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=31.68 E-value=1.1e+02 Score=24.65 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=28.1
Q ss_pred HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
..|-...|.+|++||--+=+ +......+..++ ..+... +..||.+|.+++.+
T Consensus 176 AraL~~~p~lLlLDEPts~L--------D~~~~~~l~~~l---~~l~~~-g~tviivtHd~~~~ 227 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGL--------DIDALKVVADGV---NSLRDG-KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTC--------CHHHHHHHHHHH---HTTCCS-SCEEEEECSSGGGG
T ss_pred HHHHHhCCCEEEEeCCCCCC--------CHHHHHHHHHHH---HHHHhc-CCEEEEEeeCHHHH
Confidence 34445679999999953321 222333333444 444322 44666678766544
No 186
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=31.52 E-value=23 Score=27.72 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=11.8
Q ss_pred CeEEEEcccccccc
Q psy10044 39 PCVVFIDEIDSVGA 52 (235)
Q Consensus 39 P~Il~iDeiD~l~~ 52 (235)
-..|++||+|.+..
T Consensus 176 ~~~lViDEah~~~~ 189 (245)
T 3dkp_A 176 VEWLVVDESDKLFE 189 (245)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEeChHHhcc
Confidence 46899999999875
No 187
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=31.48 E-value=20 Score=27.02 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 118 ~~~~~he~gh~l 129 (169)
T 1rm8_A 118 FLVAVHELGHAL 129 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeehhhhhhhhc
Confidence 457999999997
No 188
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P
Probab=31.33 E-value=18 Score=32.16 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 164 ~~va~HEiGHaL 175 (463)
T 1g9k_A 164 RQTLTHEIGHTL 175 (463)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh
Confidence 468999999998
No 189
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=31.17 E-value=1.5e+02 Score=21.48 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=37.6
Q ss_pred hhccHHHHHHHHHH----HHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 18 VLVGQGARRVRDLF----KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 18 ~~~g~~~~~i~~~F----~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
.+.|.-.+++.-.+ ..|-...|.++++||--+-. +......+..++..+. .... .+|.+|...+
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~---~~~~-tiiivsH~~~ 124 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL--------DEERRRKLITIMERYL---KKIP-QVILVSHDEE 124 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTT--------CHHHHHHHHHHHHHTG---GGSS-EEEEEESCGG
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccC--------CHHHHHHHHHHHHHHH---ccCC-EEEEEEChHH
Confidence 44555455554332 24445779999999953321 2223334444444442 2222 4555666542
Q ss_pred cccHHhhCCCcccEEEEc
Q psy10044 94 DLDKALLRPGRFDIEVNV 111 (235)
Q Consensus 94 ~ld~al~rpgRf~~~i~i 111 (235)
+.. ..|+.+.+
T Consensus 125 -----~~~--~~d~ii~l 135 (148)
T 1f2t_B 125 -----LKD--AADHVIRI 135 (148)
T ss_dssp -----GGG--GCSEEEEE
T ss_pred -----HHH--hCCEEEEE
Confidence 223 45666665
No 190
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=30.99 E-value=77 Score=22.84 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHhhC
Q psy10044 152 LENMVNQAALRAAIDGVPHVTMKYLEYARDKVLM 185 (235)
Q Consensus 152 i~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~~~ 185 (235)
|..+..+|...|...++..|+.+|+..|++..-.
T Consensus 45 I~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f 78 (128)
T 2byk_B 45 AIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 78 (128)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 3445556777777889999999999999998744
No 191
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A
Probab=30.92 E-value=19 Score=32.25 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 180 ~~va~HEIGHaL 191 (479)
T 1kap_P 180 RQTLTHEIGHTL 191 (479)
T ss_dssp HHHHHHHHHHHH
T ss_pred ceeehhhhhhhh
Confidence 468999999998
No 192
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Probab=29.93 E-value=20 Score=32.06 Aligned_cols=12 Identities=50% Similarity=0.462 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 183 ~~va~HEiGHaL 194 (479)
T 1k7i_A 183 RQTFTHEIGHAL 194 (479)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccccHHHHHHhh
Confidence 467999999998
No 193
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.81 E-value=49 Score=26.20 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~ 93 (235)
.+..|-...|.++++||--+=. +......+..++..+.. . +..+|.+|.+++
T Consensus 149 ~lAraL~~~p~lllLDEPts~L--------D~~~~~~l~~~l~~~~~---~-g~tvi~vtHd~~ 200 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGL--------APILVSEVFEVIQKINQ---E-GTTILLVEQNAL 200 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTC--------CHHHHHHHHHHHHHHHH---T-TCCEEEEESCHH
T ss_pred HHHHHHHcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHHH---C-CCEEEEEecCHH
Confidence 3445556789999999953321 22334444455555431 1 234555666543
No 194
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=29.58 E-value=48 Score=26.23 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=17.5
Q ss_pred eEEEEecCC---CCcccHHhhCCCcccEEEEcCC
Q psy10044 83 VVVLGATNR---RDDLDKALLRPGRFDIEVNVPP 113 (235)
Q Consensus 83 v~vIatTn~---~~~ld~al~rpgRf~~~i~i~~ 113 (235)
-.+|.|||. .+..-+.|.+ |+. .+.|+.
T Consensus 148 ~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~ 178 (212)
T 1tue_A 148 PPILLTTNIHPAKDNRWPYLES--RIT-VFEFPN 178 (212)
T ss_dssp CCEEEEESSCTTSSSSCHHHHT--SCE-EEECCS
T ss_pred CCEEEecCCCcccccchhhhhh--hEE-EEEcCC
Confidence 356668987 3334456777 774 667763
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=29.11 E-value=37 Score=28.56 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=35.4
Q ss_pred HHHHHHHHhh--CCCeEEEEccccccccccCCCCCC-ccHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy10044 27 VRDLFKAAKD--RTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFHQNEGVVVLGATN 90 (235)
Q Consensus 27 i~~~F~~A~~--~~P~Il~iDeiD~l~~~r~~~~~~-~~~~~~~~~ll~~ld~~~~~~~v~vIatTn 90 (235)
+..+...++. ..+.+|+||.+..+....-...+. ......+..++..+..+....++.||.+..
T Consensus 206 l~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 206 LDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 3344455566 678999999999998542111011 111223556665555554444556665544
No 196
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=29.02 E-value=1.1e+02 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCeEEEEcc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDE 46 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDe 46 (235)
..+.++.+....|.++++|-
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC
T ss_pred HHHHHHHHhccCCCEEEEeC
Confidence 34556666777899999985
No 197
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=28.97 E-value=1.9e+02 Score=23.94 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=15.3
Q ss_pred HHHHHHHhhCCCeEEEEccccc
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDS 49 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~ 49 (235)
+-.+..|....|.++++||--+
T Consensus 262 ~l~~a~~l~~~p~~lllDEp~~ 283 (339)
T 3qkt_A 262 RLAMSLYLAGEISLLILDEPTP 283 (339)
T ss_dssp HHHHHHHTTTTTCEEEEECCCT
T ss_pred HHHHHHHhcCCCCEEEEECCCC
Confidence 3344555566799999999544
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=28.93 E-value=60 Score=24.64 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy10044 39 PCVVFIDEIDSVGA 52 (235)
Q Consensus 39 P~Il~iDeiD~l~~ 52 (235)
-..+++||+|.+..
T Consensus 159 ~~~lViDEah~~~~ 172 (220)
T 1t6n_A 159 IKHFILDECDKMLE 172 (220)
T ss_dssp CCEEEEESHHHHHS
T ss_pred CCEEEEcCHHHHhc
Confidence 47899999999864
No 199
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=28.38 E-value=44 Score=25.09 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=25.6
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK 97 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~ 97 (235)
-.+|++||+|.+... .....+..++..+. .+.+ ++..|+..+..+..
T Consensus 147 ~~~lViDEah~~~~~--------~~~~~l~~i~~~~~---~~~~-~l~~SAT~~~~~~~ 193 (206)
T 1vec_A 147 VQMIVLDEADKLLSQ--------DFVQIMEDIILTLP---KNRQ-ILLYSATFPLSVQK 193 (206)
T ss_dssp CCEEEEETHHHHTST--------TTHHHHHHHHHHSC---TTCE-EEEEESCCCHHHHH
T ss_pred CCEEEEEChHHhHhh--------CcHHHHHHHHHhCC---ccce-EEEEEeeCCHHHHH
Confidence 478999999998642 12334455555443 2233 44445555554443
No 200
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=28.09 E-value=26 Score=28.98 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=34.6
Q ss_pred HHHHHHHHhh-CCCeEEEEccccccccccCCCCCC-ccHHHHHHHHHHHhcCCCCCCCeEEEEe
Q psy10044 27 VRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFHQNEGVVVLGA 88 (235)
Q Consensus 27 i~~~F~~A~~-~~P~Il~iDeiD~l~~~r~~~~~~-~~~~~~~~~ll~~ld~~~~~~~v~vIat 88 (235)
+..+.+..+. ..+.+|+||.+..+.........+ ......+..++..+..+....++.||.+
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 3344455555 678999999999997532211111 1112345666666655544455566655
No 201
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=28.06 E-value=20 Score=27.20 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 114 ~~v~~hE~Gh~l 125 (168)
T 830c_A 114 FLVAAHEFGHSL 125 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhhhhhcchh
Confidence 457999999997
No 202
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=27.84 E-value=73 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=14.0
Q ss_pred HHHhhCCCeEEEEcccccccc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVGA 52 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~~ 52 (235)
..+....|.+|+|||.-.+..
T Consensus 141 a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 141 YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHTTCCSEEEEEEEC----
T ss_pred HHHHhcCCCEEEEcCccccCC
Confidence 344667899999999998763
No 203
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=27.74 E-value=49 Score=25.24 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.8
Q ss_pred CeEEEEcccccccc
Q psy10044 39 PCVVFIDEIDSVGA 52 (235)
Q Consensus 39 P~Il~iDeiD~l~~ 52 (235)
-.++++||+|.+..
T Consensus 151 ~~~lViDEah~~~~ 164 (219)
T 1q0u_A 151 AHILVVDEADLMLD 164 (219)
T ss_dssp CCEEEECSHHHHHH
T ss_pred ceEEEEcCchHHhh
Confidence 47899999999864
No 204
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=27.69 E-value=1.7e+02 Score=23.72 Aligned_cols=55 Identities=27% Similarity=0.354 Sum_probs=30.2
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
+..|-...|.+|++||-=+= -+......+..++..+. ...+..||.+|.+.+.+.
T Consensus 154 iAraL~~~P~lLlLDEPts~--------LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAG--------LDPMGVSEIMKLLVEMQ---KELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTT--------CCHHHHHHHHHHHHHHH---HHHCCEEEEEESCCSSGG
T ss_pred HHHHHHcCCCEEEEECcccc--------CCHHHHHHHHHHHHHHH---hhCCCEEEEEecCHHHHH
Confidence 44555678999999994321 12223334444444442 111346777888776554
No 205
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.49 E-value=1.4e+02 Score=19.91 Aligned_cols=85 Identities=12% Similarity=0.006 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCC--CCCeEEEEecCCCCcccHHhhCCCc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEGVVVLGATNRRDDLDKALLRPGR 104 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vIatTn~~~~ld~al~rpgR 104 (235)
..+.++.+....|.++++|-- + +. .+ . -.++..+..... .-+++++ +....... ....+.|-
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~--l-~~-----~~--g----~~~~~~l~~~~~~~~~pii~~-s~~~~~~~-~~~~~~g~ 99 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVN--M-DG-----MD--G----YALCGHFRSEPTLKHIPVIFV-SGYAPRTE-GPADQPVP 99 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSS--C-SS-----SC--H----HHHHHHHHHSTTTTTCCEEEE-ESCCC------TTSCCC
T ss_pred HHHHHHHHhcCCCCEEEEeCC--C-CC-----CC--H----HHHHHHHHhCCccCCCCEEEE-eCCCcHhH-HHHhhcCC
Confidence 345556667778999999842 1 10 01 1 223333332211 2334443 33333333 44555554
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcC
Q psy10044 105 FDIEVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 105 f~~~i~i~~P~~~~R~~il~~~l~~ 129 (235)
.+ .+. .+-+.++-...++..+++
T Consensus 100 ~~-~l~-KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 100 DA-YLV-KPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp SE-EEE-SSCCHHHHHHHHHHHHHH
T ss_pred ce-EEe-ccCCHHHHHHHHHHHHhh
Confidence 44 222 333777777777777654
No 206
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=27.25 E-value=50 Score=27.85 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCeEEEEccccccccccCCCCCC-ccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcc
Q psy10044 37 RTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDL 95 (235)
Q Consensus 37 ~~P~Il~iDeiD~l~~~r~~~~~~-~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~l 95 (235)
..|.+|++||+-+++......... ......+..++..+..+....++.||.++......
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 579999999999887432211101 11112344555554444333455666666554433
No 207
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=26.60 E-value=73 Score=27.04 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=31.8
Q ss_pred HhhCCC--eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEc
Q psy10044 34 AKDRTP--CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNV 111 (235)
Q Consensus 34 A~~~~P--~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i 111 (235)
+-...| .+|+|||.++=+. ......+..+|..+. . +.-||.+|..++ +.. ..|+++.+
T Consensus 309 ~l~~~~~~~~LlLDEpt~~LD--------~~~~~~l~~~L~~l~---~--~~~vi~itH~~~-----~~~--~~d~i~~l 368 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDAGIG--------GAAAIAVAEQLSRLA---D--TRQVLVVTHLAQ-----IAA--RAHHHYKV 368 (415)
T ss_dssp HHHHCCSSSEEEESSTTTTCC--------HHHHHHHHHHHHHHT---T--TSEEEEECSCHH-----HHT--TCSEEEEE
T ss_pred HHHhCCCCCEEEEECCCCCCC--------HHHHHHHHHHHHHHh---C--CCEEEEEeCcHH-----HHh--hcCeEEEE
Confidence 444567 9999999877442 223444555555543 1 234555676543 333 45555555
No 208
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=25.79 E-value=23 Score=27.23 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.||++
T Consensus 123 ~~v~~hE~Gh~l 134 (181)
T 3ma2_D 123 FLVAVHELGHAL 134 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred eeeehhhccccc
Confidence 347999999996
No 209
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=25.66 E-value=1.4e+02 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=12.1
Q ss_pred HHHHHHhhCCCeEEEEcc
Q psy10044 29 DLFKAAKDRTPCVVFIDE 46 (235)
Q Consensus 29 ~~F~~A~~~~P~Il~iDe 46 (235)
+.+..++...|.++++|-
T Consensus 38 ~a~~~~~~~~~dlvl~D~ 55 (124)
T 1srr_A 38 QALDIVTKERPDLVLLDM 55 (124)
T ss_dssp HHHHHHHHHCCSEEEEES
T ss_pred HHHHHHhccCCCEEEEec
Confidence 344455556789999874
No 210
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=25.43 E-value=1.9e+02 Score=24.15 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEecCC---CCcccHHhhCCCcccEEEEcCCC
Q psy10044 63 ANQTINQLLAEMDGFHQNEGVVVLGATNR---RDDLDKALLRPGRFDIEVNVPPP 114 (235)
Q Consensus 63 ~~~~~~~ll~~ld~~~~~~~v~vIatTn~---~~~ld~al~rpgRf~~~i~i~~P 114 (235)
.-.+...+..+++.+-..+ .+|+|.++ +..|-.++.+|.||=-.-.|.+|
T Consensus 98 ~l~iK~~lf~~l~~~~~~~--aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~ 150 (319)
T 3ado_A 98 NLDLKRKIFAQLDSIVDDR--VVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPP 150 (319)
T ss_dssp CHHHHHHHHHHHHTTCCSS--SEEEECCSSCCHHHHHTTCTTGGGEEEEEECSST
T ss_pred HHHHHHHHHHHHHHHhhhc--ceeehhhhhccchhhhhhccCCCcEEEecCCCCc
Confidence 3568889999999875544 33433332 33555567788898554455555
No 211
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.20 E-value=1.6e+02 Score=19.85 Aligned_cols=86 Identities=7% Similarity=0.002 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccH--HhhCCCc
Q psy10044 27 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDK--ALLRPGR 104 (235)
Q Consensus 27 i~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~--al~rpgR 104 (235)
..+.++.+....|.++++|-- + +. .+ . -.++..+........+.+|..|...+.-.. ...+.|-
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~--l-~~-----~~--g----~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLN--L-PD-----QD--G----VSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSC--C-SS-----SC--H----HHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred HHHHHHHHHhCCCCEEEEeCC--C-CC-----CC--H----HHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 345556667788999998742 1 10 01 1 234555544222233444444544322111 2333344
Q ss_pred ccEEEEcCCC-CHHHHHHHHHHHhcC
Q psy10044 105 FDIEVNVPPP-DYTGRREILDLYLGK 129 (235)
Q Consensus 105 f~~~i~i~~P-~~~~R~~il~~~l~~ 129 (235)
.+ ++..| +.++-...++..+.+
T Consensus 105 ~~---~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 105 ST---WLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CE---EECSSCCHHHHHHHHHHHHHH
T ss_pred CE---EEeCCCCHHHHHHHHHHHHHh
Confidence 33 34444 777777777766654
No 212
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=24.70 E-value=1.2e+02 Score=22.87 Aligned_cols=58 Identities=12% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCC---CCHHHHHHHHHHHhc
Q psy10044 66 TINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP---PDYTGRREILDLYLG 128 (235)
Q Consensus 66 ~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~---P~~~~R~~il~~~l~ 128 (235)
-+..++..+..-....-++|||. ++-++++++. |.|..+-|.. |-.=.|.-++++..+
T Consensus 87 ~fA~~l~~~~~~G~~~i~FvIGG---a~Gl~~~v~~--rA~~~lSlS~mTfpHqL~RliL~EQiYR 147 (167)
T 1to0_A 87 ELADTIDKLATYGKSKVTFVIGG---SLGLSDTVMK--RADEKLSFSKMTFPHQLMRLILVEQIYR 147 (167)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECC---SSCCCHHHHH--HCSEEEESCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEEEC---CCCCCHHHHH--hhCcEEEccCCCCcHHHHHHHHHHHHHH
Confidence 44555555432111234678877 5789999999 9999999874 556677777776664
No 213
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.48 E-value=1.8e+02 Score=20.11 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHHHHHHhhCCCeEEEEcc
Q psy10044 28 RDLFKAAKDRTPCVVFIDE 46 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDe 46 (235)
.+.+..+....|.++++|-
T Consensus 41 ~~a~~~l~~~~~dlvi~d~ 59 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDM 59 (154)
T ss_dssp HHHHHHHTTSCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 4455566667788888874
No 214
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.46 E-value=1e+02 Score=20.88 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=12.8
Q ss_pred HHHHHHHhhCCCeEEEEcc
Q psy10044 28 RDLFKAAKDRTPCVVFIDE 46 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDe 46 (235)
.+.++.+....|.++++|-
T Consensus 41 ~~a~~~l~~~~~dlvi~d~ 59 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDI 59 (137)
T ss_dssp HHHHHHHHHHCCSEEEECS
T ss_pred HHHHHHHhccCCCEEEEeC
Confidence 3444555666789999874
No 215
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=24.20 E-value=1.9e+02 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHhh--CCCeEEEEccccccc
Q psy10044 20 VGQGARRVRDLFKAAKD--RTPCVVFIDEIDSVG 51 (235)
Q Consensus 20 ~g~~~~~i~~~F~~A~~--~~P~Il~iDeiD~l~ 51 (235)
.|.-.+.+.-....|.. ..|.++++||.++-+
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~L 368 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAAL 368 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTC
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccC
Confidence 33333444434444432 568899999998754
No 216
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=23.95 E-value=1.7e+02 Score=19.66 Aligned_cols=85 Identities=20% Similarity=0.195 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccE
Q psy10044 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDI 107 (235)
Q Consensus 28 ~~~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~ 107 (235)
.+.++.+....|.++++|-- + +. .+ . .+++..+......-+++++.+....+....++. .|-.+.
T Consensus 39 ~~al~~~~~~~~dlvilD~~--l-p~-----~~--g----~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~-~ga~~~ 103 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIE--M-PG-----MT--G----LEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVV-NDVDAY 103 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSS--C-SS-----SC--H----HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHH-TTCSEE
T ss_pred HHHHHHHhhcCCCEEEEecC--C-CC-----CC--H----HHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHH-cCCcEE
Confidence 34444555667899998742 1 11 01 1 123333332222334444433333334444544 444442
Q ss_pred EEEcCCCCHHHHHHHHHHHhcC
Q psy10044 108 EVNVPPPDYTGRREILDLYLGK 129 (235)
Q Consensus 108 ~i~i~~P~~~~R~~il~~~l~~ 129 (235)
+. .+-+.++-...++..+..
T Consensus 104 -l~-Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 104 -VL-KERSIEELVETINKVNNG 123 (133)
T ss_dssp -EE-TTSCHHHHHHHHHHHHC-
T ss_pred -EE-CCCCHHHHHHHHHHHHcC
Confidence 22 233666666667666544
No 217
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=23.46 E-value=2e+02 Score=21.28 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=45.9
Q ss_pred eEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCC---CCH
Q psy10044 40 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP---PDY 116 (235)
Q Consensus 40 ~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~---P~~ 116 (235)
.+|.+|+=-.- ....-+..++..+..-. ..-++|||. ++-++++++. |.|..+-|.. |-.
T Consensus 68 ~vi~Ld~~Gk~-----------~sS~~fA~~l~~~~~~g-~~i~FvIGG---~~Gl~~~v~~--rA~~~lSlS~mT~pHq 130 (155)
T 1ns5_A 68 RIVTLDIPGKP-----------WDTPQLAAELERWKLDG-RDVSLLIGG---PEGLSPACKA--AAEQSWSLSALTLPHP 130 (155)
T ss_dssp EEEEEEEEEEC-----------CCHHHHHHHHHHHHHHC-SCEEEEECB---TTBCCHHHHH--HCSEEECCCSSCCCHH
T ss_pred cEEEEcCCCCc-----------CCHHHHHHHHHHHHhcC-CeEEEEEEC---CCCCCHHHHH--hhCceEEccCCCCcHH
Confidence 68888873221 12223444554432111 345688887 5789999999 9999998874 556
Q ss_pred HHHHHHHHHHhc
Q psy10044 117 TGRREILDLYLG 128 (235)
Q Consensus 117 ~~R~~il~~~l~ 128 (235)
=.|.-++++..+
T Consensus 131 l~RliL~EQiYR 142 (155)
T 1ns5_A 131 LVRVLVAESLYR 142 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 218
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=23.41 E-value=53 Score=28.73 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=15.6
Q ss_pred hhCCCeEEEEccccccccc
Q psy10044 35 KDRTPCVVFIDEIDSVGAK 53 (235)
Q Consensus 35 ~~~~P~Il~iDeiD~l~~~ 53 (235)
+.+.|.+|+||++..+...
T Consensus 310 ~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 310 QESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTTCCCEEEEECGGGSCCS
T ss_pred HHcCCCEEEEccHHHhccC
Confidence 3467999999999998753
No 219
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.24 E-value=93 Score=20.01 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHh-cCccCCCCCHHHHHhcCCCCCHHHHHHHH
Q psy10044 122 ILDLYL-GKIVSKNIDVDTLARGTTGFTGADLENMV 156 (235)
Q Consensus 122 il~~~l-~~~~~~~~~l~~la~~t~G~s~~di~~l~ 156 (235)
+|+.|. ......+.|++.|+.++. +|..+++...
T Consensus 20 ~L~~Yy~~hk~L~EeDl~~L~~ksk-ms~qqvkdwF 54 (70)
T 2ys9_A 20 PLERYWAAHQQLRETDIPQLSQASR-LSTQQVLDWF 54 (70)
T ss_dssp HHHHHHHHTCCCCTTHHHHHHHHTT-CCHHHHHHHH
T ss_pred HHHHHHHHhcccchhhHHHHHHHhC-CCHHHHHHHH
Confidence 444444 333567789999999876 8888887765
No 220
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=23.22 E-value=1.2e+02 Score=22.57 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=8.0
Q ss_pred CeEEEEccccccc
Q psy10044 39 PCVVFIDEIDSVG 51 (235)
Q Consensus 39 P~Il~iDeiD~l~ 51 (235)
..+|++||+|.+.
T Consensus 163 ~~~iIiDEah~~~ 175 (216)
T 3b6e_A 163 FSLIIIDECHHTN 175 (216)
T ss_dssp CSEEEETTC----
T ss_pred ccEEEEECchhhc
Confidence 4799999999985
No 221
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=23.15 E-value=81 Score=26.77 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=30.5
Q ss_pred HhhCCCeEEEEccccccccccC---CCCCC----ccHHHHHHHHHHHhcCCCCCCCeEEEE
Q psy10044 34 AKDRTPCVVFIDEIDSVGAKRT---NSVLH----PYANQTINQLLAEMDGFHQNEGVVVLG 87 (235)
Q Consensus 34 A~~~~P~Il~iDeiD~l~~~r~---~~~~~----~~~~~~~~~ll~~ld~~~~~~~v~vIa 87 (235)
.+...|.+|+||-+-++..+.. ..++. -...+.++++|..|.++-...++.+|.
T Consensus 107 i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp CCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 3566899999999999986432 11111 124456667666655443344545543
No 222
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=23.12 E-value=58 Score=24.96 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=26.9
Q ss_pred CeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhC
Q psy10044 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLR 101 (235)
Q Consensus 39 P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~r 101 (235)
-..|++||+|.+.... ....+..++..+. .+.+ +++.++..+..+..-+.+
T Consensus 168 ~~~lViDEah~~~~~~--------~~~~~~~i~~~~~---~~~~-~l~~SAT~~~~~~~~~~~ 218 (228)
T 3iuy_A 168 ITYLVIDEADKMLDME--------FEPQIRKILLDVR---PDRQ-TVMTSATWPDTVRQLALS 218 (228)
T ss_dssp CCEEEECCHHHHHHTT--------CHHHHHHHHHHSC---SSCE-EEEEESCCCHHHHHHHHT
T ss_pred ceEEEEECHHHHhccc--------hHHHHHHHHHhCC---cCCe-EEEEEeeCCHHHHHHHHH
Confidence 4789999999886521 1223444444443 2333 444455555554444333
No 223
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=23.06 E-value=46 Score=22.85 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=14.8
Q ss_pred HHHhhCCCeEEEEcccccc
Q psy10044 32 KAAKDRTPCVVFIDEIDSV 50 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l 50 (235)
+.++.++|.|+|+|+=-.+
T Consensus 72 ~e~~~~~P~vV~vd~~N~i 90 (96)
T 1vc3_B 72 EEARNLKPTVVLVDERNRI 90 (96)
T ss_dssp HHHTTCCCEEEEECTTCCE
T ss_pred HHHhcCCCEEEEECCCCCE
Confidence 3677899999999985443
No 224
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=22.98 E-value=52 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=15.7
Q ss_pred HHHhhCCCeEEEEccccccc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVG 51 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~ 51 (235)
+.++.++|.|+|+|+=-.+.
T Consensus 70 ~e~~~~~P~vV~vd~~N~i~ 89 (97)
T 1uhe_A 70 DEINAHKPSIVLVDEKNEIL 89 (97)
T ss_dssp HHHHHCCCEEEEECTTSCEE
T ss_pred HHHhcCCCEEEEECCCCCEE
Confidence 35778999999999965554
No 225
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=22.75 E-value=67 Score=25.69 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=28.8
Q ss_pred HHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc
Q psy10044 31 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD 94 (235)
Q Consensus 31 F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ 94 (235)
+..|-...|.++++||--+=. +......+..++..+. ...+..+|.+|.+.+.
T Consensus 139 lAraL~~~p~lllLDEPts~L--------D~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSAL--------DLANQDIVLSLLIDLA---QSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTS--------CHHHHHHHHHHHHHHH---HTSCCEEEEEESCHHH
T ss_pred HHHHHHcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHH
Confidence 344555779999999953321 2233444445555443 1223456667776543
No 226
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=22.45 E-value=66 Score=25.76 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=13.5
Q ss_pred CCeEEEEccccccccc
Q psy10044 38 TPCVVFIDEIDSVGAK 53 (235)
Q Consensus 38 ~P~Il~iDeiD~l~~~ 53 (235)
.|.+|+|||+-++...
T Consensus 133 ~~~livlDe~~~~~~~ 148 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHIE 148 (279)
T ss_dssp TCSEEEEECGGGGCCS
T ss_pred CCCEEEECCHHHhcCC
Confidence 5899999999997653
No 227
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=21.97 E-value=39 Score=24.66 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=9.7
Q ss_pred HHHHHHHHHHH
Q psy10044 201 ITAYHEGGHAV 211 (235)
Q Consensus 201 ~~a~~e~gha~ 211 (235)
.++.||.||++
T Consensus 79 ~v~aHE~GH~L 89 (132)
T 1c7k_A 79 RVTAHETGHVL 89 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred eEEeeeehhcc
Confidence 47999999996
No 228
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=21.74 E-value=1.4e+02 Score=24.00 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q psy10044 148 TGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183 (235)
Q Consensus 148 s~~di~~l~~~A~~~a~~~~~~~i~~~~~~~al~~~ 183 (235)
.-.-+++++++|...+--.++..++..|+.-|++++
T Consensus 191 Le~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 191 LKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 334456677777777777889999999999999866
No 229
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=21.72 E-value=1.4e+02 Score=24.69 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHhhCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD 94 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ 94 (235)
.+..|--..|.||++||-=+=+ +......+...+..+. .+ ..+|..|.+++.
T Consensus 200 aiARAL~~~p~iLlLDEPts~L--------D~~~~~~i~~~l~~l~---~~--~Tvi~itH~l~~ 251 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSAL--------DTSNERAIQASLAKVC---AN--RTTIVVAHRLST 251 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCC--------CHHHHHHHHHHHHHHH---TT--SEEEEECCSHHH
T ss_pred HHHHHHHhCCCEEEEECCcccC--------CHHHHHHHHHHHHHHc---CC--CEEEEEEcChHH
Confidence 3445555679999999953321 2223334444444443 12 245557776543
No 230
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=21.62 E-value=51 Score=25.13 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=11.8
Q ss_pred CeEEEEcccccccc
Q psy10044 39 PCVVFIDEIDSVGA 52 (235)
Q Consensus 39 P~Il~iDeiD~l~~ 52 (235)
-.+|++||+|.+..
T Consensus 156 ~~~iViDEah~~~~ 169 (224)
T 1qde_A 156 IKMFILDEADEMLS 169 (224)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CcEEEEcChhHHhh
Confidence 47999999998864
No 231
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=21.45 E-value=49 Score=25.67 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=21.6
Q ss_pred hCCCeEEEEccccccccccCCCCCCccHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCccc
Q psy10044 36 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLD 96 (235)
Q Consensus 36 ~~~P~Il~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld 96 (235)
...|.+|++||--+- .. ..+...+..+ . .+..+| +|.+.+.++
T Consensus 120 ~~~p~lllLDEPts~------------~~---~~l~~~l~~l-~-~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 120 TLNDAFVILDEAQNT------------TP---AQMKMFLTRL-G-FGSKMV-VTGDITQVD 162 (208)
T ss_dssp CBCSEEEEECSGGGC------------CH---HHHHHHHTTB-C-TTCEEE-EEEC-----
T ss_pred hcCCCEEEEeCCccc------------cH---HHHHHHHHHh-c-CCCEEE-EECCHHHHh
Confidence 356999999995432 12 2333334444 2 234666 887766554
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=21.03 E-value=2.2e+02 Score=23.78 Aligned_cols=20 Identities=15% Similarity=-0.054 Sum_probs=14.6
Q ss_pred HHHhhCC-CeEEEEccccccc
Q psy10044 32 KAAKDRT-PCVVFIDEIDSVG 51 (235)
Q Consensus 32 ~~A~~~~-P~Il~iDeiD~l~ 51 (235)
..+.... |.++++||.++-.
T Consensus 298 a~~l~~~~~~~lllDEp~~~L 318 (371)
T 3auy_A 298 ANALIGNRVECIILDEPTVYL 318 (371)
T ss_dssp HHHHHSSCCSEEEEESTTTTC
T ss_pred HHHHhcCCCCeEEEeCCCCcC
Confidence 3444567 9999999987744
No 233
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=21.02 E-value=59 Score=22.56 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=15.1
Q ss_pred HHHhhCCCeEEEEccccccc
Q psy10044 32 KAAKDRTPCVVFIDEIDSVG 51 (235)
Q Consensus 32 ~~A~~~~P~Il~iDeiD~l~ 51 (235)
+.|+.++|.|+|+|+=-.+.
T Consensus 71 ~e~~~~~P~vv~vd~~N~i~ 90 (102)
T 3plx_B 71 EEAKTFKPKVVFVDENNTAT 90 (102)
T ss_dssp HHHHHCCCEEEEECTTSCEE
T ss_pred HHHhcCCCEEEEECCCCcEE
Confidence 36778999999999944443
No 234
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=20.91 E-value=73 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=29.9
Q ss_pred HhhCCCeEEEEccccccccccC-C--CCCC--ccHHHHHHHHHHHhcCCCCCCCeEEEEec
Q psy10044 34 AKDRTPCVVFIDEIDSVGAKRT-N--SVLH--PYANQTINQLLAEMDGFHQNEGVVVLGAT 89 (235)
Q Consensus 34 A~~~~P~Il~iDeiD~l~~~r~-~--~~~~--~~~~~~~~~ll~~ld~~~~~~~v~vIatT 89 (235)
++...+.+|+||.+..+..... . .++. ....+.+..++..+..+-...++.||.+.
T Consensus 137 ~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3457799999999999985322 1 1111 01223445555555444333445666543
No 235
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=20.89 E-value=1.3e+02 Score=19.77 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHHHhh
Q psy10044 116 YTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAI----DGVPHVTMKYLEYARDKVL 184 (235)
Q Consensus 116 ~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~~di~~l~~~A~~~a~~----~~~~~i~~~~~~~al~~~~ 184 (235)
.+--.+||+.++.+.. ..++-+.+ -.+..-|+-++++|..+|.. ++...++.+|+++.+-+..
T Consensus 11 ~~lI~ril~~~f~~~k-trI~~dAl-----~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqLl 77 (81)
T 3b0b_C 11 KETVERLLRLHFRDGR-TRVNGDAL-----LLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLL 77 (81)
T ss_dssp HHHHHHHHHHHCCSTT-CEECHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-ccccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHHH
Confidence 3444567776665421 11221111 13455667778887766665 4777899999998765543
No 236
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=20.87 E-value=1.4e+02 Score=23.52 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHhhCCCeEEEEccccc
Q psy10044 30 LFKAAKDRTPCVVFIDEIDS 49 (235)
Q Consensus 30 ~F~~A~~~~P~Il~iDeiD~ 49 (235)
.+..|-...|.++++||--+
T Consensus 149 ~lAral~~~p~lllLDEPts 168 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDEATA 168 (243)
T ss_dssp HHHHHHHHCCSEEEEECCSC
T ss_pred HHHHHHhcCCCEEEEECCcc
Confidence 34455566799999999544
No 237
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=20.70 E-value=1.5e+02 Score=22.31 Aligned_cols=58 Identities=7% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCcccHHhhCCCcccEEEEcCC---CCHHHHHHHHHHHhcC
Q psy10044 66 TINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP---PDYTGRREILDLYLGK 129 (235)
Q Consensus 66 ~~~~ll~~ld~~~~~~~v~vIatTn~~~~ld~al~rpgRf~~~i~i~~---P~~~~R~~il~~~l~~ 129 (235)
-+..++..+..-. ..-++|||. ++-++++++. |.|..+-|.. |-.=.|.-++++..+.
T Consensus 82 ~fA~~l~~~~~~G-~~i~FvIGG---a~Gl~~~v~~--rAd~~lSlS~mTfpHqL~RliL~EQiYRA 142 (163)
T 1o6d_A 82 EFADFLKDLEMKG-KDITILIGG---PYGLNEEIFA--KAHRVFSLSKMTFTHGMTVLIVLEQIFRA 142 (163)
T ss_dssp HHHHHHHHHHHHT-CCEEEEECC---TTCCCGGGGG--GCSEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CeEEEEEEC---CCCCCHHHHH--hhCceEEccCCCCcHHHHHHHHHHHHHHH
Confidence 3444554432111 345688877 5789999999 9999999874 5566777777776643
No 238
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=20.69 E-value=34 Score=30.15 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q psy10044 200 MITAYHEGGHAV 211 (235)
Q Consensus 200 ~~~a~~e~gha~ 211 (235)
..++.||.|||+
T Consensus 377 ~~Va~HE~GHaL 388 (425)
T 1l6j_A 377 FLVAAHEFGHAL 388 (425)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhhhhhhhhc
Confidence 468999999997
No 239
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=20.57 E-value=39 Score=28.92 Aligned_cols=11 Identities=55% Similarity=0.824 Sum_probs=9.8
Q ss_pred HHHHHHHHHHH
Q psy10044 201 ITAYHEGGHAV 211 (235)
Q Consensus 201 ~~a~~e~gha~ 211 (235)
.++.||.||++
T Consensus 109 ~~~~HE~gH~l 119 (365)
T 3ba0_A 109 LTAVHEIGHSL 119 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred eehhhhhhhhh
Confidence 46999999998
No 240
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=20.22 E-value=1.4e+02 Score=18.81 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHhcCccCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q psy10044 115 DYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAA 160 (235)
Q Consensus 115 ~~~~R~~il~~~l~~~~~~~~~l~~la~~t~G~s~~di~~l~~~A~ 160 (235)
+.++...+=+.|......+..+..+||..| |+|-.+|.....+-.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t-gLt~~qVkvWFqNRR 56 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVT-GLARSEIKKWFSDHR 56 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CcCHHHhhHhcccch
Confidence 556666555555554455666788999988 899999999887654
Done!