RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10044
(235 letters)
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 272 bits (697), Expect = 1e-89
Identities = 107/212 (50%), Positives = 142/212 (66%), Gaps = 3/212 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTINQ 69
G +F E+ VG GA RVRDLF+ AK PC++FIDEID+VG +R + QT+NQ
Sbjct: 121 GSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ 180
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-G 128
LL EMDGF N GV+V+ ATNR D LD ALLRPGRFD +V V PD GR EIL ++
Sbjct: 181 LLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN 240
Query: 129 KIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
K ++ ++D+ +AR T GF+GADL N++N+AAL AA +TM +E A D+V+ GPE
Sbjct: 241 KKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPE 300
Query: 189 RKSRLPDEETNMITAYHEGGHAVVAFFTKDSE 220
+KSR+ E+ + AYHE GHA+V KD++
Sbjct: 301 KKSRVISEKEKKLVAYHEAGHALVGLLLKDAD 332
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 247 bits (632), Expect = 1e-78
Identities = 111/221 (50%), Positives = 149/221 (67%), Gaps = 5/221 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQ 69
G +F E+ VG GA RVRDLF+ AK PC++FIDEID+VG +R + QT+NQ
Sbjct: 216 GSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ 275
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-G 128
LL EMDGF NEGV+V+ ATNR D LD ALLRPGRFD ++ V PD GR +IL ++
Sbjct: 276 LLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN 335
Query: 129 KIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
K +++++D+ +ARGT GF+GADL N++N+AAL AA +TM+ +E A D+V+ GPE
Sbjct: 336 KPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPE 395
Query: 189 RKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITL 229
RKSR+ E ITAYHE GHA+V D++ H +T+
Sbjct: 396 RKSRVISEAEKKITAYHEAGHALVGLLLPDAD--PVHKVTI 434
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 214 bits (546), Expect = 1e-65
Identities = 101/205 (49%), Positives = 137/205 (66%), Gaps = 4/205 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQ 69
G EF E+ VG GA RVRDLFK AK+ +PC+VFIDEID+VG +R + + QT+NQ
Sbjct: 249 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQ 308
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-G 128
LL EMDGF N+GV+V+ ATNR D LD ALLRPGRFD ++ V PD GR +IL ++
Sbjct: 309 LLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368
Query: 129 KIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
K +S ++ ++ +AR T GF+GADL N++N+AA+ A +TMK ++ A D+V+ G E
Sbjct: 369 KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLE 428
Query: 189 RKSRLPDEETNMITAYHEGGHAVVA 213
L D + + AYHE GHA+V
Sbjct: 429 GTP-LEDSKNKRLIAYHEVGHAIVG 452
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 205 bits (523), Expect = 2e-62
Identities = 107/221 (48%), Positives = 146/221 (66%), Gaps = 5/221 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G +F E+ VG GA RVRD+F+ AK PC++FIDEID+VG +R + H QT+NQ
Sbjct: 218 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 277
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
+L EMDGF NEG++V+ ATNR D LD ALLRPGRFD +V V PD GR +IL +++ +
Sbjct: 278 MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
+ ++ +ID +ARGT GF+GADL N+VN+AAL AA V+M E A+DK++MG E
Sbjct: 338 VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAE 397
Query: 189 RKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHPITL 229
R+S + E TAYHE GHA++ E+ H +T+
Sbjct: 398 RRSMVMTEAQKESTAYHEAGHAIIGRLV--PEHDPVHKVTI 436
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 181 bits (462), Expect = 2e-55
Identities = 82/199 (41%), Positives = 120/199 (60%), Gaps = 19/199 (9%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS-------VLHPYAN 64
G E + +G+GAR VR+LF+ A+++ P ++FIDEID++ AKRT+S V
Sbjct: 198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREV-----Q 252
Query: 65 QTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFD--IEVNVPPPDYTGRREI 122
+T+ QLLAEMDGF V ++ ATNR D LD A+LRPGRFD IE VP PD GR EI
Sbjct: 253 RTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIE--VPLPDEEGRLEI 310
Query: 123 LDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARD 181
L ++ K+ ++ ++D++ LA T G +GADL+ + +A + A D VTM+ A +
Sbjct: 311 LKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIE 370
Query: 182 KVLMGPERKSRLPDEETNM 200
KV+ + + +E M
Sbjct: 371 KVMG--KEEKDSMEEPGVM 387
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 180 bits (460), Expect = 4e-55
Identities = 77/192 (40%), Positives = 118/192 (61%), Gaps = 13/192 (6%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS-------VLHPYAN 64
G E + +G+GAR VR+LF+ A+++ P ++FIDEID++GAKR +S V
Sbjct: 218 GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREV-----Q 272
Query: 65 QTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILD 124
+T+ +LL ++DGF V V+ ATNR D LD ALLRPGRFD ++ P PD GR EIL
Sbjct: 273 RTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332
Query: 125 LYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183
++ K+ ++ ++D++ LAR T GF+GADL+ + +A + A + VTM+ A +KV
Sbjct: 333 IHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392
Query: 184 LMGPERKSRLPD 195
+ ++ S
Sbjct: 393 VKKKKKLSSTAR 404
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 154 bits (392), Expect = 2e-45
Identities = 77/176 (43%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G E +G+GAR VR++F+ AK++ P ++FIDEID++ AKRT+S +T+ Q
Sbjct: 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQ 248
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LLAE+DGF V V+ ATNR D LD ALLRPGRFD + VP PD+ GR EIL ++ K
Sbjct: 249 LLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184
+ +++++D++ +A+ T G +GADL+ + +A + A + +VTM A +KVL
Sbjct: 309 MKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKVL 364
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 148 bits (374), Expect = 9e-42
Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 5/177 (2%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70
+G E VG+ + +R+LF+ A+ P ++FIDEIDS+ + R S + + QL
Sbjct: 308 KGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQL 366
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL--- 127
L E+DG + EGV+V+ ATNR DDLD ALLRPGRFD + VP PD R EI ++L
Sbjct: 367 LTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426
Query: 128 GKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPH-VTMKYLEYARDKV 183
+++++D++ LA T G++GAD+ +V +AAL A + VT+ A K+
Sbjct: 427 KPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKI 483
Score = 101 bits (253), Expect = 8e-25
Identities = 76/181 (41%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70
GPE VG+ R+R+LF+ A+ P ++FIDEID++ KR +S + + QL
Sbjct: 49 NGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKR-SSDQGEVERRVVAQL 107
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILD-LYLGK 129
LA MDG + + V+V+GATNR D LD A RPGRFD E+ V PD GR EIL
Sbjct: 108 LALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLM 166
Query: 130 IVSKNIDVDTLARGTTGFTGADLENMVNQAALRAA---IDGVPH---VTMKYLEYARDKV 183
+ TLA T G +GADL + +AALR ID V VT E A KV
Sbjct: 167 FLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKV 226
Query: 184 L 184
L
Sbjct: 227 L 227
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 148 bits (375), Expect = 4e-41
Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70
+GPE VG+ + +R++F+ A+ P ++F DEID++ R ++ +NQL
Sbjct: 519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQL 578
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L EMDG + VVV+ ATNR D LD ALLRPGRFD + VPPPD R+EI ++ +
Sbjct: 579 LTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM 638
Query: 131 -VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184
+++++D++ LA T G+TGAD+E + +AA+ A + + + LE ++ L
Sbjct: 639 PLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFL 693
Score = 126 bits (319), Expect = 2e-33
Identities = 64/153 (41%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71
GPE G+ R+R++FK A++ P ++FIDEID++ KR V + + QLL
Sbjct: 245 GPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKR-EEVTGEVEKRVVAQLL 303
Query: 72 AEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-GKI 130
MDG V+V+GATNR D LD AL RPGRFD E+ + PD R+EIL ++
Sbjct: 304 TLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP 363
Query: 131 VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
+++++D+D LA T GF GADL + +AA+ A
Sbjct: 364 LAEDVDLDKLAEVTHGFVGADLAALAKEAAMAA 396
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 122 bits (309), Expect = 2e-33
Identities = 67/178 (37%), Positives = 98/178 (55%), Gaps = 9/178 (5%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79
VG GARR+ +L++ A+ PC+VFIDE+D++ R L ++ +N LL E+DG +
Sbjct: 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE 251
Query: 80 NEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVD 138
NEGVV + ATNR + LD A+ RF+ E+ P+ R EIL+ Y K + + D+
Sbjct: 252 NEGVVTIAATNRPELLDPAI--RSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLR 309
Query: 139 TLARGTTGFTGADLENMVNQAAL-RAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPD 195
LA T G +G D++ V + AL RA + V + +E A K ERK R P
Sbjct: 310 YLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK-----ERKRRAPR 362
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 113 bits (286), Expect = 3e-32
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71
G E VG+ +R+R+LF+AAK PCV+FIDEID++ R S + + +NQLL
Sbjct: 31 GSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSR-GSGGDSESRRVVNQLL 89
Query: 72 AEMDGFHQNEG-VVVLGATNRRDDLDKALLRPGRFDIEVNVP 112
E+DGF + V+V+ ATNR D LD ALLR GRFD + P
Sbjct: 90 TELDGFTSSLSKVIVIAATNRPDKLDPALLR-GRFDRIIEFP 130
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 113 bits (284), Expect = 2e-29
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 17/162 (10%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQT----- 66
G EF + +G+G R VRD+F+ A++ P ++FIDE+DS+ KR ++ QT
Sbjct: 212 GSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA-------QTGADRE 264
Query: 67 ----INQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREI 122
+ +LL +MDGF Q V V+ ATNR D LD ALLRPGR D ++ P PD +R I
Sbjct: 265 VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI 324
Query: 123 LDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
K+ +S+ +D++ + AD+ + +A ++A
Sbjct: 325 FQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQA 366
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 112 bits (283), Expect = 4e-29
Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 3/176 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQ 69
G E + +G G + VR+LF+ A++ P +VFIDEID++G KR S +T+ +
Sbjct: 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLE 309
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LL ++DGF V V+ ATNR + LD AL+RPGR D ++ P PD +R I +++ K
Sbjct: 310 LLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184
+ +++++D++ +GAD++ + +A L A + VT A++KVL
Sbjct: 370 MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVL 425
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 512
Score = 97.1 bits (242), Expect = 2e-23
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 11 QGPEFDEVLVGQGARRVRDLF----KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQT 66
+GPE VG+ R++R +F + A + P +VF DE+DS+ R + V
Sbjct: 258 KGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFDEMDSLFRTRGSGVSSDVETTV 317
Query: 67 INQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLY 126
+ QLLAE+DG + V+V+GA+NR D +D A+LRPGR D+++ + PD +I Y
Sbjct: 318 VPQLLAEIDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFAKY 377
Query: 127 LGKIVSKNIDVDTLARGTTGFTGADLENMVNQA--ALRAAIDGVPHVTMKY 175
L + ++ + G A ++ + AL A + +V + Y
Sbjct: 378 L----TDDLPLPEDLAAHDGDREATAAALIQRVVDALYARSEANRYVEVTY 424
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41.
Length = 212
Score = 80.7 bits (200), Expect = 1e-18
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 172 TMKYLEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSE 220
TM LE A D+V+ GPE+KSR+ EE + AYHE GHA+V ++
Sbjct: 1 TMAELEEAIDRVIAGPEKKSRVISEEEKRLVAYHEAGHALVGLLLPGAD 49
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 63.7 bits (155), Expect = 7e-13
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 11 QGPEFDEVLVGQGARR---VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI 67
+ E LV VR LF+ A+ P V+FIDEIDS+ N++L
Sbjct: 54 NASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALL-------- 105
Query: 68 NQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPP 113
L D E V V+GATNR D R DI + +P
Sbjct: 106 RVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 57.3 bits (139), Expect = 1e-09
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 19 LVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--------TNSVLHPYANQTINQL 70
+VG+ R+R + + A+ +PC+++IDEID + TN VL T
Sbjct: 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVL-----ATFITW 353
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI 130
L+E + V V+ N D L +LR GRFD + P R +I ++L K
Sbjct: 354 LSE-----KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408
Query: 131 VSKNI---DVDTLARGTTGFTGADLENMVNQA 159
K+ D+ L++ + F+GA++E + +A
Sbjct: 409 RPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 53.1 bits (127), Expect = 5e-09
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70
+ G G R+R A+ P V+ +DEI S+ ++L + +
Sbjct: 51 LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALL------LLLEE 104
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPD 115
L + + + V+ TN DL ALLR RFD + +
Sbjct: 105 LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 34.7 bits (80), Expect = 0.032
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 26/168 (15%)
Query: 4 HPDTNHAQG---PEFDEVLVGQGARRVRD--LFKAAKDRTPCVVFIDEIDSVGAKRTNSV 58
PD + + +L+ G R LF A + ++ +DEI+ +
Sbjct: 77 TPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEIN-RAPPEVQNA 131
Query: 59 LHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDD-----LDKALLRPGRFDIEVNVPP 113
L + + + +V+ N + L +ALL RF + + V
Sbjct: 132 LLEALEERQVTVP-GLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDY 188
Query: 114 PD--------YTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLE 153
PD + +L L +V + + L R +
Sbjct: 189 PDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVS 236
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This
model represents the AAA family ATPase, EccA, of the
actinobacterial flavor of type VII secretion systems.
Species such as Mycobacterium tuberculosis have several
instances of this system per genome, designated EccA1,
EccA2, etc [Protein fate, Protein and peptide secretion
and trafficking].
Length = 557
Score = 34.0 bits (78), Expect = 0.057
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 79
+G+ + ++ +A V+F+DE ++ P+ + I+ LLA M+ +
Sbjct: 360 IGESEAKTNEIIDSALGG---VLFLDEAYTLVETG-YGQKDPFGLEAIDTLLARMEN-DR 414
Query: 80 NEGVVVLGATNRRDDLDKAL 99
+ +VV+GA R DLDK L
Sbjct: 415 DR-LVVIGA-GYRKDLDKFL 432
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 32.7 bits (75), Expect = 0.060
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 17 EVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 76
+ G + L +AA R + +DEI+ NS L + + L +G
Sbjct: 47 NIDPGGASWVDGPLVRAA--REGEIAVLDEINRANPDVLNS-LLSLLD---ERRLLLPEG 100
Query: 77 FH----QNEGVVVLGATNRRD----DLDKALLRPGRF 105
+G ++ N D +L AL RF
Sbjct: 101 GELVKAAPDGFRLIATMNPLDRGLNELSPALRS--RF 135
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 32.6 bits (74), Expect = 0.18
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 5 PDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLH 60
P + + GP LV ARR L D TP +V IDEID LH
Sbjct: 258 PLSELSDGPRTKFALVADIARRCVVLNPYLSDALAKLTPGIVLIDEIDLF--------LH 309
Query: 61 PYANQTINQLL 71
P Q INQ L
Sbjct: 310 PKWQQQINQKL 320
>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K. Members of
this protein family are the stage V sporulation protein
K (SpoVK), a close homolog of the Rubisco expression
protein CbbX (TIGR02880) and a members of the ATPase
family associated with various cellular activities
(pfam00004). Members are strictly limited to bacterial
endospore-forming species, but are not universal in this
group and are missing from the Clostridium group
[Cellular processes, Sporulation and germination].
Length = 261
Score = 31.2 bits (71), Expect = 0.38
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 22/105 (20%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSV---GAKRTNSVLHPYANQTINQLLAEMDG 76
+G A++ R++ K A V+FIDE S+ G K + + I+ L+ M+
Sbjct: 90 IGHTAQKTREVIKKALGG---VLFIDEAYSLARGGEK-------DFGKEAIDTLVKGMED 139
Query: 77 FHQNEGVVVLGATNRRDDLDKAL-LRPG---RFDIEVNVPPPDYT 117
++NE V++L + D++D L L PG RF I ++ PDYT
Sbjct: 140 -NRNEFVLILAGYS--DEMDYFLSLNPGLRSRFPISIDF--PDYT 179
>gnl|CDD|222102 pfam13398, Peptidase_M50B, Peptidase M50B-like. This is a family
of bacterial and plant peptidases in the same family as
MEROPS:M50B.
Length = 201
Score = 29.8 bits (68), Expect = 0.87
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 198 TNMITAYHEGGHAVVAFFT 216
++T +HE GHA+ A T
Sbjct: 21 RLLVTFFHELGHALAALLT 39
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 29.6 bits (67), Expect = 0.92
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 16 DEVLVGQG-----ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS 57
D++ G RR++++ + AK P + +DEI K TNS
Sbjct: 78 DDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEI----FKGTNS 120
>gnl|CDD|225865 COG3328, COG3328, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 379
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 118 GRREILDLYLGKIVSK---NIDVDTLARGTTGFT------GADLENMVNQAALRAAIDG- 167
GRREIL +++G SK + +D RG + L ++ +AA+
Sbjct: 175 GRREILGIWVGVRESKFWLSFLLDLKNRGLSDVLLVVVDGLKGLPEAISAVFPQAAVQRC 234
Query: 168 VPHVTMKYLEYARDKVL 184
+ H+ L+ K
Sbjct: 235 IVHLVRNLLDKVPRKDQ 251
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 29.3 bits (66), Expect = 1.4
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 26/97 (26%)
Query: 41 VVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALL 100
VV ID++D + +L +LL + VV + A + + + KA
Sbjct: 163 VVIIDDLDRCEPEEAVELL------EAVRLLFDF------PNVVFILAYD-EEIIKKA-- 207
Query: 101 RPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDV 137
IE N + G+ YL KI+ +
Sbjct: 208 ------IEHNYGGGEIDGQD-----YLEKIIQLPFKL 233
>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This Pfam entry
includes some of the AAA proteins not detected by the
pfam00004 model.
Length = 168
Score = 27.9 bits (63), Expect = 3.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 30 LFKAAKDRTPCVVFIDEID 48
L +A + + +V IDEI+
Sbjct: 67 LTEAVRRKPYSIVLIDEIE 85
>gnl|CDD|237613 PRK14109, PRK14109, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 1007
Score = 28.7 bits (65), Expect = 3.6
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 22/84 (26%)
Query: 88 ATNRRDDLDKA--LLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTT 145
A +R DD ++A R R RRE+L + ++ +DV+ + R +
Sbjct: 650 AASRHDDPERAVAAARALR--------------RRELLRIASADLLGL-LDVEEVCRALS 694
Query: 146 GFTGADLENMVNQAALRAAIDGVP 169
A LE AALRAAI V
Sbjct: 695 DVWDAVLE-----AALRAAIRAVE 713
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 27.8 bits (62), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTP 39
QG FDE L R +R LF K R P
Sbjct: 167 QGEGFDEYL-----REIRSLFTKVKVRKP 190
>gnl|CDD|206115 pfam13944, Lipocalin_6, Lipocalin-like domain.
Length = 122
Score = 27.3 bits (61), Expect = 4.2
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 124 DLYLGKIVSKNIDVDTLARGTTGFTGADLENMVN 157
+L LG I KN VD G F+G L+
Sbjct: 53 NLNLGDITVKNCAVDKAGNGFYKFSGDQLKLHFK 86
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 28.4 bits (64), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 14 EFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDS-VGA 52
EF+E R++ + K + ++FIDEI + VGA
Sbjct: 246 EFEE--------RLKAVLKEVEKSKNVILFIDEIHTIVGA 277
>gnl|CDD|239117 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA:
inosine-uridine preferring,
xanthosine-inosine-uridine-adenosine-preferring and,
uridine-cytidine preferring nucleoside hydrolases.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
These enzymes vary in their substrate specificity. This
group contains proteins similar to nucleoside hydrolases
which hydrolyze both pyrimidine and purine
ribonucleosides: the inosine-uridine preferring
nucleoside hydrolase from Crithidia fasciculata, the
inosine-uridine-xanthosine preferring nucleoside
hydrolase RihC from Escherichia coli and the
xanthosine-inosine-uridine-adenosine-preferring
nucleoside hydrolase RihC from Salmonella enterica
serovar Typhimurium. This group also contains proteins
similar to the pyrimidine-specific uridine-cytidine
preferring nucleoside hydrolases URH1 from Saccharomyces
cerevisiae, E. coli RihA and E. coli RihB. E. coli
RihA is equally efficient with uridine and cytidine, E.
coli RihB prefers cytidine over uridine. S. cerevisiae
URH1 prefers uridine over cytidine. .
Length = 302
Score = 26.7 bits (60), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 122 ILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAA 160
+LD L N+DV+T T G T DL + + A
Sbjct: 243 LLDPELFTTKRANVDVETEGELTRGRTVVDLRGVTGRPA 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,506,912
Number of extensions: 1229414
Number of successful extensions: 1271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1232
Number of HSP's successfully gapped: 52
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)