RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10044
(235 letters)
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 277 bits (712), Expect = 3e-92
Identities = 109/212 (51%), Positives = 143/212 (67%), Gaps = 3/212 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G +F E+ VG GA RVRDLF AK PC+VFIDEID+VG R + H QT+NQ
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-G 128
LL EMDGF EG++V+ ATNR D LD ALLRPGRFD ++ V PPD GR++IL+++
Sbjct: 142 LLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201
Query: 129 KIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
K ++++++++ +A+ T GF GADLEN+VN+AAL AA +G +TMK E A D+V+ GP
Sbjct: 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPA 261
Query: 189 RKSRLPDEETNMITAYHEGGHAVVAFFTKDSE 220
RKS L I AYHE GHAVV+ + E
Sbjct: 262 RKSLLISPAEKRIIAYHEAGHAVVSTVVPNGE 293
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 277 bits (710), Expect = 1e-91
Identities = 108/212 (50%), Positives = 146/212 (68%), Gaps = 3/212 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+NQ
Sbjct: 97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 156
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-G 128
LL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++ G
Sbjct: 157 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 216
Query: 129 KIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
K +++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A D+V+M P
Sbjct: 217 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPA 276
Query: 189 RKSRLPDEETNMITAYHEGGHAVVAFFTKDSE 220
+KS + ITAYHE GHA+ A F + ++
Sbjct: 277 KKSLVLSPRDRRITAYHEAGHALAAHFLEHAD 308
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 240 bits (616), Expect = 2e-80
Identities = 87/192 (45%), Positives = 121/192 (63%), Gaps = 8/192 (4%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTI 67
G EF EV+ G GA RVR LFK A+ R PC+V+IDEID+VG KR+ + + ++N QT+
Sbjct: 72 GAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT-MSGFSNTEEEQTL 130
Query: 68 NQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
NQLL EMDG + V+VL +TNR D LD AL+RPGR D V + P RREI + +L
Sbjct: 131 NQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190
Query: 128 GKI-VSKNIDV--DTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVL 184
+ ++++ LA T GF+GAD+ N+ N+AAL AA +G V EYA ++VL
Sbjct: 191 KSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVL 250
Query: 185 MGPERKSRLPDE 196
G +KS++ +
Sbjct: 251 AGTAKKSKILSK 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 238 bits (609), Expect = 2e-79
Identities = 82/191 (42%), Positives = 121/191 (63%), Gaps = 5/191 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTIN 68
G F E+ VG GA RVRDLF+ AK + P ++FIDEID++G R + + QT+N
Sbjct: 77 GSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN 136
Query: 69 QLLAEMDGFH-QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL 127
QLLAEMDGF +N V+VL ATNR + LD AL+RPGRFD +V V PD+ GR EIL +++
Sbjct: 137 QLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196
Query: 128 GKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186
+ ++ ++++ +A+ T G GADL N++N+AAL A + V ++L+ A ++ + G
Sbjct: 197 KGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAG 256
Query: 187 PERKSRLPDEE 197
E+K
Sbjct: 257 LEKKLEHHHHH 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 230 bits (588), Expect = 2e-76
Identities = 93/180 (51%), Positives = 125/180 (69%), Gaps = 3/180 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G +F E+ VG GA RVRD+F+ AK PC++FIDEID+VG +R + H QT+NQ
Sbjct: 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 137
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
+L EMDGF NEG++V+ ATNR D LD ALLRPGRFD +V V PD GR +IL +++ +
Sbjct: 138 MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
+ ++ +ID +ARGT GF+GADL N+VN+AAL AA V+M E A+DK++MG E
Sbjct: 198 VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGLE 257
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 211 bits (538), Expect = 2e-68
Identities = 91/171 (53%), Positives = 121/171 (70%), Gaps = 3/171 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQ 69
G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+NQ
Sbjct: 106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 165
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-G 128
LL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++ G
Sbjct: 166 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 225
Query: 129 KIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179
K +++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A
Sbjct: 226 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 210 bits (536), Expect = 2e-68
Identities = 91/171 (53%), Positives = 121/171 (70%), Gaps = 3/171 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQ 69
G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+NQ
Sbjct: 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 141
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYL-G 128
LL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++ G
Sbjct: 142 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 201
Query: 129 KIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179
K +++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A
Sbjct: 202 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 193 bits (492), Expect = 2e-61
Identities = 77/202 (38%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQ 69
G E + +G+GA V+D+FK AK++ P ++FIDEID++ AKRT+++ +T+ Q
Sbjct: 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQ 143
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LLAEMDGF V ++GATNR D LD A+LRPGRFD + VP PD GR EIL ++ K
Sbjct: 144 LLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
+ ++++++++ +A+ T G GA+L+ + +A + A + +VTM A +K++ E
Sbjct: 204 MNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM---E 260
Query: 189 RKSRLPDEETNMITAYHEGGHA 210
+K E ++ Y H
Sbjct: 261 KKKVKVKEPAHLDVLYRLEHHH 282
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 179 bits (457), Expect = 5e-56
Identities = 68/200 (34%), Positives = 99/200 (49%), Gaps = 28/200 (14%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQ 69
GPE + G+ VR++F A+ PCV+F DE+DS+ R ++ A++ INQ
Sbjct: 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 141
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
+L EMDG + V ++GATNR D +D A+LRPGR D + +P PD R IL L K
Sbjct: 142 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRA------------------------- 163
V+K++D++ LA+ T GF+GADL + +A A
Sbjct: 202 SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 261
Query: 164 AIDGVPHVTMKYLEYARDKV 183
D VP + + E A
Sbjct: 262 EDDPVPEIRRDHFEEAMRFA 281
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 174 bits (443), Expect = 4e-54
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 18/189 (9%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71
GPE + VG+ R VR +F+ AK+ PCV+F DE+D++ +R++ + + +NQLL
Sbjct: 77 GPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLL 135
Query: 72 AEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI- 130
EMDG + V ++ ATNR D +D A+LRPGR D + V P R IL
Sbjct: 136 TEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT 195
Query: 131 ---VSKNIDVDTLARG--TTGFTGADLENMVNQAALRA-----------AIDGVPHVTMK 174
+ +++++ +A +TGADL +V +A++ A G V+ K
Sbjct: 196 KPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHK 255
Query: 175 YLEYARDKV 183
+ E A KV
Sbjct: 256 HFEEAFKKV 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 184 bits (469), Expect = 4e-54
Identities = 68/200 (34%), Positives = 99/200 (49%), Gaps = 28/200 (14%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQ 69
GPE + G+ VR++F A+ PCV+F DE+DS+ R ++ A++ INQ
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 603
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
+L EMDG + V ++GATNR D +D A+LRPGR D + +P PD R IL L K
Sbjct: 604 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRA------------------------- 163
V+K++D++ LA+ T GF+GADL + +A A
Sbjct: 664 SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 723
Query: 164 AIDGVPHVTMKYLEYARDKV 183
D VP + + E A
Sbjct: 724 EDDPVPEIRRDHFEEAMRFA 743
Score = 155 bits (393), Expect = 1e-43
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 19/190 (10%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + + ++QLL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLL 329
Query: 72 AEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI- 130
MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 330 TLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389
Query: 131 VSKNIDVDTLARGTTGFTGADLENMVNQAALRAA-----------------IDGVPHVTM 173
++ ++D++ +A T G GADL + ++AAL+A + VTM
Sbjct: 390 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTM 449
Query: 174 KYLEYARDKV 183
+A +
Sbjct: 450 DDFRWALSQS 459
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 169 bits (429), Expect = 5e-50
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + + ++QLL
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV-ERRIVSQLL 329
Query: 72 AEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI- 130
MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++ +
Sbjct: 330 TLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389
Query: 131 VSKNIDVDTLARGTTGFTGADLENMVNQAALRA 163
++ ++D++ +A T G GADL + ++AAL+A
Sbjct: 390 LADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 144 bits (366), Expect = 3e-42
Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-H 78
+G+ + V+ LF A++ P ++FID++D++ R + + +LL +M+G +
Sbjct: 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGN 150
Query: 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNID 136
++GV+VLGATN LD A+ R RF+ + +P PD R + ++ +G V D
Sbjct: 151 DSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED 208
Query: 137 VDTLARGTTGFTGADLENMVNQAALRA 163
TL T G++G+D+ +V A ++
Sbjct: 209 YRTLGAMTEGYSGSDIAVVVKDALMQP 235
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 144 bits (366), Expect = 3e-42
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-H 78
+G+ + V++LF+ A++ P ++FIDEIDS+ R+ + A + + L +M G
Sbjct: 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGV 145
Query: 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNID 136
N+G++VLGATN LD A+ R RF+ + +P P+ R + L+LG D
Sbjct: 146 DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEAD 203
Query: 137 VDTLARGTTGFTGADLENMVNQAALRA 163
L R T G++GAD+ +V A ++
Sbjct: 204 FRELGRKTDGYSGADISIIVRDALMQP 230
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 145 bits (367), Expect = 4e-42
Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-H 78
+G+ + V+ LF A++ P ++FID++D++ R + + +LL +M+G +
Sbjct: 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGN 183
Query: 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNID 136
++GV+VLGATN LD A+ R RF+ + +P PD R + ++ +G V D
Sbjct: 184 DSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED 241
Query: 137 VDTLARGTTGFTGADLENMVNQAALRA 163
TL T G++G+D+ +V A ++
Sbjct: 242 YRTLGAMTEGYSGSDIAVVVKDALMQP 268
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 141 bits (358), Expect = 3e-41
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-- 77
VG G + VR LF A+ P ++FIDE+DS+ ++R++S H + + + L E DG
Sbjct: 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPG 153
Query: 78 -HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSK--N 134
+ +VVL ATNR +LD+A LR RF V V PD R +L+ L K S
Sbjct: 154 NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDT 211
Query: 135 IDVDTLARGTTGFTGADLENMVNQAALRA------------AIDGVPHVTMKYLEYARDK 182
+ LA+ T G++G+DL + AAL I + +T + + +
Sbjct: 212 EALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271
Query: 183 V 183
+
Sbjct: 272 I 272
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 142 bits (359), Expect = 7e-41
Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH- 78
VG+G + VR LF A+ + P V+FIDEIDS+ ++R + H + + + L ++DG
Sbjct: 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATT 216
Query: 79 -QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVS--KNI 135
+ ++V+GATNR ++D+A R R + +P P+ + R++I+ + K
Sbjct: 217 SSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEE 274
Query: 136 DVDTLARGTTGFTGADLENMVNQAALRA------------AIDGVPHVTMKYLEYARDKV 183
+++ + + + F+GAD+ + +A+L D V + E A V
Sbjct: 275 EIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 143 bits (363), Expect = 9e-41
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF-H 78
+G+ + V++LF+ A++ P ++FIDEIDS+ R+ + A + + L +M G
Sbjct: 209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGV 267
Query: 79 QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKI--VSKNID 136
N+G++VLGATN LD A+ R RF+ + +P P+ R + L+LG D
Sbjct: 268 DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEAD 325
Query: 137 VDTLARGTTGFTGADLENMVNQAALRA 163
L R T G++GAD+ +V A ++
Sbjct: 326 FQELGRKTDGYSGADISIIVRDALMQP 352
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 141 bits (356), Expect = 4e-40
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 20 VGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH- 78
VG+G + VR LF A++ P ++FID++DS+ +R H + + + L E DG
Sbjct: 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQS 247
Query: 79 -QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSK--NI 135
++ V+V+GATNR +LD+A+LR RF V V P+ R +L L K S
Sbjct: 248 AGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK 305
Query: 136 DVDTLARGTTGFTGADLENMVNQAALRA------------AIDGVPHVTMKYLEYARDKV 183
++ LAR T G++G+DL + AAL + + ++ + + K+
Sbjct: 306 ELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 132 bits (334), Expect = 7e-38
Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 22/217 (10%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI 67
E + G+ A+ +R ++ A + C +FI+++D+ + + + NQ +
Sbjct: 69 AGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMV 128
Query: 68 NQLL---------AEMDGFHQNE---GVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPD 115
N L ++ G + + V ++ N L L+R GR + P +
Sbjct: 129 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 188
Query: 116 YTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKY 175
R + G + N+ + + + F G ++ A + V+
Sbjct: 189 --DRIGVC---TGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTG 243
Query: 176 LEYARDKVLMGPERKSRLPDEETNMITAYHEGGHAVV 212
+E DK+L + + + E G+ +V
Sbjct: 244 IEKIGDKLLNSFDGPPTFEQPKMTI-EKLLEYGNMLV 279
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 115 bits (291), Expect = 1e-31
Identities = 27/171 (15%), Positives = 64/171 (37%), Gaps = 10/171 (5%)
Query: 12 GPEFDEVLVGQG-ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70
P+ + ++ +F A V +D+I+ + ++N + L
Sbjct: 97 SPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQAL 154
Query: 71 LAEMDGFH-QNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
L + Q ++++G T+R+D L + F ++V P+ ++L+
Sbjct: 155 LVLLKKAPPQGRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIHV--PNIATGEQLLEALELL 211
Query: 130 IVSKNIDVDTLARGTTG---FTGADLENMVNQAALRAAIDGVPHVTMKYLE 177
K+ + T+A+ G + G M+ + +L+ + + L
Sbjct: 212 GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 262
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 98.0 bits (245), Expect = 7e-27
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 115 DYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTM 173
D GR I ++ + V + I + ++R TGA+L ++ +A + A T
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 61
Query: 174 KYLEYARDKVLMGPERKSRLPDEET 198
K A DKV+ G ++ S
Sbjct: 62 KDFLKAVDKVISGYKKFSSTSRYMQ 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 83.7 bits (208), Expect = 3e-21
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 103 GRFDIEVNVPPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAAL 161
G P+ R +IL ++ K+ +++ I++ +A G +GA+++ + +A +
Sbjct: 2 GHHHHHH--SHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 59
Query: 162 RAAIDGVPHVTMKYLEYARDKVLMGPERKS 191
A + HVT + E A KV+ ++ S
Sbjct: 60 YALRERRVHVTQEDFEMAVAKVM---QKDS 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 79.8 bits (198), Expect = 7e-20
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 112 PPPDYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPH 170
PPP+ R +IL ++ K+ +++ I++ +A G +GA+++ + +A + A + H
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH 60
Query: 171 VTMKYLEYARDKVLMGPERKS 191
VT + E A KV+ ++ S
Sbjct: 61 VTQEDFEMAVAKVM---QKDS 78
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 66.2 bits (162), Expect = 9e-15
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 119 RREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLE 177
RR I K+ ++ D+D+L +GA + ++ +A LRA + LE
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 178 YARDKVLMGPERKSR 192
A + +
Sbjct: 63 EAYATQVKTDNTVDK 77
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 65.8 bits (161), Expect = 2e-14
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 115 DYTGRREILDLYLGKI-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTM 173
D +R I K+ +S+ +D++ +GAD+ ++ ++ + A + V
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 174 KYLEYARDKVLMGPERKSR 192
K E A V+ E++
Sbjct: 62 KDFEKAYKTVIKKDEQEHE 80
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 61.7 bits (149), Expect = 2e-11
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 20/176 (11%)
Query: 1 MVTHPDTNHAQGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH 60
V + +G A + +++ K A V+FIDE +
Sbjct: 96 YVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE---R 149
Query: 61 PYANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPG---RFDIEVNVPPPDYT 117
Y + I LL M+ + V++ G +R ++ + PG R + P
Sbjct: 150 DYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQ--SNPGFRSRIAHHIEFPDYSDE 207
Query: 118 GRREILDLYLGK--------IVSKNIDVDTLARGTTGFT-GADLENMVNQAALRAA 164
EI L + L R F + N +++A LR A
Sbjct: 208 ELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263
>2di4_A Zinc protease, cell division protein FTSH homolog;
metalloproteinase, hexamer-ring, hydrolase; 2.79A
{Aquifex aeolicus} SCOP: a.269.1.1
Length = 238
Score = 58.8 bits (143), Expect = 9e-11
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 184 LMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSE 220
GP + A HE GHA++ + D +
Sbjct: 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDD 37
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 51.5 bits (123), Expect = 7e-08
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 40/178 (22%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAA---KDRTPCVVFIDEIDSVGAKRTNSVLHPYA----- 63
G E + + + F+ A + + V+ E+ + T + + Y
Sbjct: 98 GSEVYSTEIK-KTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISH 156
Query: 64 -----------------NQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFD 106
L E + + + + + FD
Sbjct: 157 VIIGLKTAKGTKQLKLDPSIFESLQKE--RVEAGDVIYIEANSGAVKRQGRCDTYATEFD 214
Query: 107 IE----VNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAA 160
+E V +P D ++EI+ + V+ + D+D G G D+ +M+ Q
Sbjct: 215 LEAEEYVPLPKGDVHKKKEII-----QDVTLH-DLDVANARPQG--GQDILSMMGQLM 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 58/192 (30%)
Query: 21 GQGARRVRD-----LFKAAKD-RTPCVVFIDEIDSVGAKRT----NSVLHPYANQTIN-Q 69
G+ +R+R+ +F+ D + EI+ T +L + T Q
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL----SATQFTQ 1733
Query: 70 ---LLAEMDGFH--QNEGVVV---------LG--ATNRRDDLDKALLRP-GRFDIEVNVP 112
L E F +++G++ LG A AL IE
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA---------ALASLADVMSIE---- 1780
Query: 113 PPDYTGRREILDL--YLGKIVSKNIDVDTLARGTTGFTGADLENMV---NQAALRAAIDG 167
++++ Y G + + D L R G + + +Q AL+ ++
Sbjct: 1781 --------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 168 VPHVTMKYLEYA 179
V T +E
Sbjct: 1833 VGKRTGWLVEIV 1844
Score = 35.4 bits (81), Expect = 0.013
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 35/141 (24%)
Query: 95 LDKALLRP-----GRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTG 149
+D RP G + + VP + ++ + + L T GF
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN----------KILPEPTEGFAA 50
Query: 150 ADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHE--- 206
D + K+L Y V P + + +T +
Sbjct: 51 DD------------EPTTPAELVGKFLGYVSSLVE--PSKVGQFDQVLNLCLTEFENCYL 96
Query: 207 GG---HAVVAFFTKDSENHLT 224
G HA+ A ++++ L
Sbjct: 97 EGNDIHALAAKLLQENDTTLV 117
Score = 35.4 bits (81), Expect = 0.016
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 123 LDLYLGKIVSKNI--DVDTLARGTTGFTGADL--ENMVNQAALRAAIDGVPHVTMKYLEY 178
+DLY ++++ D + T GF+ D+ N VN G + Y
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-KRIRENYSAM 1691
Query: 179 ARDKVLMGPERKSRLPDEETNMITAYHEGGHAVVAFFTKDSENHLTHP-ITL 229
+ ++ G + ++ E T+Y + T + T P +TL
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---QF--TQPALTL 1738
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 31.0 bits (69), Expect = 0.26
Identities = 11/153 (7%), Positives = 40/153 (26%), Gaps = 18/153 (11%)
Query: 34 AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLGATNRRD 93
+ ++ I +++ ++ I Q + +N + ++
Sbjct: 128 KAKKRKTLILIQNPENL------------LSEKILQYFEKWIS-SKNSKLSIICVGGHNV 174
Query: 94 DLDKAL---LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLARGTTGFTGA 150
+ + + E+ + D ++++ L ++ + T +
Sbjct: 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNI 234
Query: 151 DLENMVNQAALRAAIDGVPHVTMKYLEYARDKV 183
I+ + K + V
Sbjct: 235 REGQNQKIPDNVIVINHK--INNKITQLIAKNV 265
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 28.4 bits (64), Expect = 2.0
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 20/86 (23%)
Query: 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLAR 142
+++LGA + L KA G I +P + + +D
Sbjct: 10 LLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCL---------NLADEISYMDIS-- 58
Query: 143 GTTGFTGADLENMVNQAALRAAIDGV 168
+ + + +DG
Sbjct: 59 --------NPDEVEQ-KVKDLNLDGA 75
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 20/67 (29%)
Query: 147 FTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPERKSRLPDEETNMITAYHE 206
+TG + +++ A R A +AR + P KS++ +
Sbjct: 654 YTGREFDDL-PLAEQREACRRA-CC------FAR----VEPSHKSKI-------VEYLQS 694
Query: 207 GGHAVVA 213
+ A
Sbjct: 695 YDE-ITA 700
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.3
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 46 EIDSVGAKRTNSVLHPYANQT-----INQLLAEMD 75
E ++ K+ + L YA+ + I A M+
Sbjct: 18 EKQAL--KKLQASLKLYADDSAPALAIK---ATME 47
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 27.8 bits (61), Expect = 3.5
Identities = 30/175 (17%), Positives = 52/175 (29%), Gaps = 22/175 (12%)
Query: 28 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVLG 87
R+L ++ +V DE L Y ++ +LLA + + + +
Sbjct: 118 RELNDLGEELGEFIVAFDEAQ---------YLRFYGSRGGKELLALFAYAYDSLPNLKII 168
Query: 88 ATNRRDDLDKALLRP--------GRFDIEVNVPPPDYTGRREILDLY---LGKIVSKN-- 134
T L L+ GR EV V P D E L + V +N
Sbjct: 169 LTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEI 228
Query: 135 IDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPER 189
+ L G G+ + A+ V + +++ R
Sbjct: 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPR 283
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 27.0 bits (60), Expect = 6.9
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 199 NMITAYHEGGHAVVAFFTKDSENHLTHPITLNL 231
++ HE GHA + ++ E + TL
Sbjct: 350 DIDVLTHEAGHAFQVYESRHYEIPEYNWPTLEA 382
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 26.6 bits (58), Expect = 8.2
Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 29/196 (14%)
Query: 12 GPEFDEVLVGQGARRVRDLFK--AAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQ 69
G E + +L + + ++ +DE + R ++L
Sbjct: 109 GNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL---------P 159
Query: 70 LLAEMDGFHQNEGVVVLGATN-------RRDDLDKALLRPGRFDIEVNVPPPDYTGRREI 122
LA + ++ G+ R +D + L GR V + P R E
Sbjct: 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKP---FSREEA 214
Query: 123 LDLYLGKIVSKNIDVDTLAR------GTTGFTGADLENMVNQAALRAAIDGVPHVTMKYL 176
++ +ID G G+ ++ L AI+ K +
Sbjct: 215 IEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI 274
Query: 177 EYARDKVLMGPERKSR 192
+ L G E +
Sbjct: 275 LKEFENFLHGREIARK 290
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,814,830
Number of extensions: 246036
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 48
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)