RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10044
(235 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 213 bits (545), Expect = 2e-70
Identities = 92/178 (51%), Positives = 123/178 (69%), Gaps = 3/178 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQ 69
G +F E+ VG GA RVRD+F+ AK PC++FIDEID+VG +R H QT+NQ
Sbjct: 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 137
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
+L EMDGF NEG++V+ ATNR D LD ALLRPGRFD +V V PD GR +IL +++ +
Sbjct: 138 MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186
+ ++ +ID +ARGT GF+GADL N+VN+AAL AA V+M E A+DK++MG
Sbjct: 198 VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 201 bits (513), Expect = 1e-65
Identities = 89/171 (52%), Positives = 119/171 (69%), Gaps = 3/171 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQ 69
G +F E+ VG GA RVRDLF+ AK PC+VFIDEID+VG KR + V + QT+NQ
Sbjct: 75 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 134
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
LL EMDGF ++ +VV+ ATNR D LD ALLRPGRFD ++ + PD GR +IL ++
Sbjct: 135 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 194
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYA 179
+++++D+ LA+ T GF GADLEN++N+AAL AA +G +TMK LE A
Sbjct: 195 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 245
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 152 bits (385), Expect = 3e-46
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 3/186 (1%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQ 69
GPE + G+ VR++F A+ PCV+F DE+DS+ R ++ A++ INQ
Sbjct: 74 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 133
Query: 70 LLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK 129
+L EMDG + V ++GATNR D +D A+LRPGR D + +P PD R IL L K
Sbjct: 134 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 193
Query: 130 I-VSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPE 188
V+K++D++ LA+ T GF+GADL + +A A + + + E + M E
Sbjct: 194 SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 253
Query: 189 RKSRLP 194
+P
Sbjct: 254 EDDPVP 259
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 145 bits (366), Expect = 8e-43
Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 24/182 (13%)
Query: 12 GPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 71
E V D+ +A V+ ID + +V + ++ LL
Sbjct: 158 FGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLL 215
Query: 72 AEMDGFHQNEGVVVLGATNR---RDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLG 128
+++ + G VV+ + N D + + + R + V D G ++
Sbjct: 216 SDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQV------ 269
Query: 129 KIVSKNIDVDTLARGTTGF--TGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMG 186
L R G L+ + ++ + A V+
Sbjct: 270 -----------LTRTGEGLQRLTHTLQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVIKN 318
Query: 187 PE 188
E
Sbjct: 319 DE 320
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 111 bits (278), Expect = 2e-29
Identities = 20/184 (10%), Positives = 45/184 (24%), Gaps = 22/184 (11%)
Query: 12 GPEFDEV-LVGQGARRVRDLFKAAK------DRTPCVVFIDEIDSVGAKR--TNSVLHPY 62
P +G + +F+ K P I+ +D++ + V
Sbjct: 187 LPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEK 246
Query: 63 ANQTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREI 122
+ + N + RF +++ P DY
Sbjct: 247 KHLNKRTQIFPPGIV----------TMN---EYSVPKTLQARFVKQIDFRPKDYLKHCLE 293
Query: 123 LDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDK 182
+L + + L A+ + + ++ + +
Sbjct: 294 RSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFN 353
Query: 183 VLMG 186
V MG
Sbjct: 354 VAMG 357
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 102 bits (254), Expect = 5e-27
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 11 QGPEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 70
GPE L G+ +R F+ A+ P ++FIDE+D++ KR + + ++QL
Sbjct: 70 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQL 128
Query: 71 LAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGK- 129
L MDG Q V+V+ ATNR + +D AL R GRFD EV++ PD TGR EIL ++
Sbjct: 129 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 188
Query: 130 IVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEYARDKVLMGPER 189
++ ++D++ +A T G GADL + ++AAL+A + + ++ D+ +
Sbjct: 189 KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE------DETIDAEVM 242
Query: 190 KSR 192
S
Sbjct: 243 NSL 245
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 94.6 bits (234), Expect = 5e-24
Identities = 21/208 (10%), Positives = 51/208 (24%), Gaps = 17/208 (8%)
Query: 12 GPEFDEVLVGQ---GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYA----- 63
F + +D+ K + + +
Sbjct: 65 NDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVP 124
Query: 64 NQTINQLLA-----EMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTG 118
QT L A +M + LG R + + R +
Sbjct: 125 IQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNL 184
Query: 119 RREILDLYLGKIVSKNIDVDTLARGTTGFTGADLENMVNQAALRAAIDGVPHVTMKYLEY 178
+ L+ + +I + G ++ + ++ + L ++ V+ K ++
Sbjct: 185 PTNLETLHKTGLF-SDIRLY-NREGVKLYSSLETPSISPKETLEKELNR--KVSGKEIQP 240
Query: 179 ARDKVLMGPERKSRLPDEETNMITAYHE 206
+++ E I E
Sbjct: 241 TLERIEQKMVLNKHQETPEFKAIQQKLE 268
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 70.4 bits (171), Expect = 4e-15
Identities = 27/182 (14%), Positives = 67/182 (36%), Gaps = 10/182 (5%)
Query: 1 MVTHPDTNHAQGPEFDEVLVGQG-ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL 59
++ P+ + ++ +F A V +D+I+ +
Sbjct: 62 EESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-- 119
Query: 60 HPYANQTINQLLAEMDGF-HQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTG 118
++N + LL + Q ++++G T+R+D L + + F ++V P+
Sbjct: 120 PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHV--PNIAT 176
Query: 119 RREILDLYLGKIVSKNIDVDTLARGTTG---FTGADLENMVNQAALRAAIDGVPHVTMKY 175
++L+ K+ + T+A+ G + G M+ + +L+ + +
Sbjct: 177 GEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLAL 236
Query: 176 LE 177
L
Sbjct: 237 LR 238
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 61.7 bits (148), Expect = 5e-12
Identities = 19/196 (9%), Positives = 47/196 (23%), Gaps = 22/196 (11%)
Query: 13 PEFDEVLVGQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--------YAN 64
+ G + F+ + +R +
Sbjct: 81 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDI 140
Query: 65 QTINQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEV--NVPPPDYTGRREI 122
+ L + + ++ + L+ + P +I
Sbjct: 141 LSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 200
Query: 123 LDLYLGKI----VSKNIDVDTLARGTTGFTGADLE--------NMVNQAALRAAIDGVPH 170
L + +A T T D +++ ++A A +G H
Sbjct: 201 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKH 260
Query: 171 VTMKYLEYARDKVLMG 186
+ + + + +VL G
Sbjct: 261 IAPEDVRKSSKEVLFG 276
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 53.3 bits (127), Expect = 4e-09
Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 10/103 (9%)
Query: 39 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH----------QNEGVVVLGA 88
+VFIDEID + K S LL ++G + + GA
Sbjct: 116 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGA 175
Query: 89 TNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIV 131
D GR I V + IL +
Sbjct: 176 FQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 218
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 46.7 bits (109), Expect = 7e-07
Identities = 16/186 (8%), Positives = 51/186 (27%), Gaps = 12/186 (6%)
Query: 9 HAQGPEFDEVLVGQGARRVRDLFKAAKDR--TPCVVFIDEIDSVGAKRTNSVLHPYANQT 66
+ + + G A + +V +DE S+ + + Y
Sbjct: 101 IVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLR 160
Query: 67 INQLLAEMDGFHQNEGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLY 126
+++ + DG ++ ++V + + + + P + +
Sbjct: 161 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQ 220
Query: 127 LGKIVSKNIDVD-----TLARGTTGFTGA-----DLENMVNQAALRAAIDGVPHVTMKYL 176
++ ++ + ++ G + A A G ++ +
Sbjct: 221 RAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 280
Query: 177 EYARDK 182
A +
Sbjct: 281 RKAVSE 286
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 38.6 bits (89), Expect = 3e-04
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 196 EETNMITAYHEGGHAVVAFFTKDSENHLTHPI 227
+ A HE GHA++ + D + I
Sbjct: 4 PKEKEKIAIHEAGHALMGLVSDDDDKVHKISI 35
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 37.3 bits (86), Expect = 5e-04
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 196 EETNMITAYHEGGHAVVAFFTKDSE 220
I AYHE GHAVV+ + E
Sbjct: 4 PAEKRIIAYHEAGHAVVSTVVPNGE 28
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 33.2 bits (75), Expect = 0.019
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
Query: 27 VRDLFKAAKDRTPC----VVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 82
RDL + V IDE+ + + N LL ++ ++
Sbjct: 100 TRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPPEH-- 145
Query: 83 VVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTLAR 142
V L AT L +L + + E + + LAR
Sbjct: 146 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLAR 204
Query: 143 GTTGFTGADLENMVNQAA 160
G + D ++ +QA
Sbjct: 205 AAEG-SLRDALSLTDQAI 221
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp.
[TaxId: 1931]}
Length = 258
Score = 28.9 bits (64), Expect = 0.47
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 9/123 (7%)
Query: 21 GQGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 80
G + K + + + + + N + Y ++ +L + N
Sbjct: 91 GAFQDAIVAGLKESAAKGNKLKVRILVGAAPVYHMNVIPSKYRDELTAKLGKAAENITLN 150
Query: 81 EGVVVLGATNRRDDLDKALLRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTL 140
+ T + K L+ G+ TG DVD
Sbjct: 151 VASMTTSKTAFSWNHSKILVVDGQSA---------LTGGINSWKDDYLDTTHPVSDVDLA 201
Query: 141 ARG 143
G
Sbjct: 202 LTG 204
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3
{Bacillus megaterium [TaxId: 1404]}
Length = 152
Score = 27.4 bits (60), Expect = 0.89
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 3 THPDTNHAQGPEFDEVLVGQGARRVRDLFKA 33
T DE L +GA + D +A
Sbjct: 95 NWATTYQKVPAFIDETLAAKGAENIADRGEA 125
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC,
C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 68
Score = 24.6 bits (54), Expect = 3.2
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 11/41 (26%)
Query: 100 LRPGRFDIEVNVPPPDYTGRREILDLYLGKIVSKNIDVDTL 140
RPG D +Y + GK+ + NI
Sbjct: 32 KRPGNGDF----SVNEY-------ETLFGKVAACNIRKGAQ 61
>d2coba1 a.4.1.15 (A:8-70) Ligand-dependent corepressor (LCoR)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 24.6 bits (53), Expect = 3.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 167 GVPHVTMKYLEYARDKVLMGPERKS 191
G+PH T++Y R L P +K
Sbjct: 34 GIPHSTLEYKVKERLGTLKNPPKKK 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 887,954
Number of extensions: 42106
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 22
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)