Query psy10046
Match_columns 805
No_of_seqs 557 out of 3296
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 16:29:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 4E-31 1.4E-35 298.7 21.2 366 160-804 25-402 (451)
2 3o7q_A L-fucose-proton symport 100.0 2.2E-29 7.5E-34 283.5 31.9 344 162-804 25-400 (438)
3 2gfp_A EMRD, multidrug resista 100.0 1.1E-27 3.7E-32 264.5 20.3 333 171-805 8-346 (375)
4 4gc0_A D-xylose-proton symport 100.0 1.4E-26 4.9E-31 265.0 30.3 197 160-358 9-242 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.9 1.3E-25 4.6E-30 257.0 27.6 153 183-336 34-195 (491)
6 2xut_A Proton/peptide symporte 99.9 1.3E-21 4.4E-26 225.9 23.3 153 183-336 33-197 (524)
7 2cfq_A Lactose permease; trans 99.9 2.3E-22 8E-27 226.0 7.2 149 653-804 215-368 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 9.1E-11 3.1E-15 131.6 21.0 157 180-337 269-433 (451)
9 3o7q_A L-fucose-proton symport 99.2 1.7E-10 5.6E-15 129.1 18.5 150 181-333 276-428 (438)
10 2cfq_A Lactose permease; trans 99.1 6.9E-10 2.3E-14 124.1 16.5 140 197-337 258-399 (417)
11 4gc0_A D-xylose-proton symport 98.9 9.1E-08 3.1E-12 108.6 22.5 159 180-340 294-465 (491)
12 2gfp_A EMRD, multidrug resista 98.9 2.5E-09 8.7E-14 117.1 8.1 140 662-804 4-143 (375)
13 2xut_A Proton/peptide symporte 98.9 4.3E-09 1.5E-13 120.8 10.1 145 658-805 12-168 (524)
14 4aps_A DI-OR tripeptide H+ sym 98.8 4E-09 1.4E-13 120.0 8.1 144 658-804 13-165 (491)
15 2g9p_A Antimicrobial peptide l 26.3 39 0.0013 20.3 1.9 14 217-230 2-15 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=4e-31 Score=298.66 Aligned_cols=366 Identities=13% Similarity=0.173 Sum_probs=286.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|..+...++..+........+++++|.+.+++ .+..+++++.+++.+++.++.+++|+++||+|||++++++.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3466666666666655555566788889999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc
Q psy10046 240 VGFVLSCF----SRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEY 314 (805)
Q Consensus 240 i~~i~~a~----a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~ 314 (805)
++.+++++ +++++.+++ +|++.|++.+...+...+++.+++| ++|+++++++..+..+|.+++|++++++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFV-LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHH-HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhccccHHHHHH-HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 999999966 6999999999999999999999998 78999999999999999999999999999989
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchh
Q psy10046 315 G-WRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIE 393 (805)
Q Consensus 315 g-Wr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (805)
| ||+.|++.+++.++..++.++..++.....+..
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 217 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP--------------------------------------------- 217 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC---------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC---------------------------------------------
Confidence 8 999999998887776665544432210000000
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccC
Q psy10046 394 TSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRA 473 (805)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (805)
+.++... .... + ..+
T Consensus 218 ------------------------~~~~~~~--------------~~~~---------~-~~~----------------- 232 (451)
T 1pw4_A 218 ------------------------PIEEYKN--------------DYPD---------D-YNE----------------- 232 (451)
T ss_dssp ------------------------SCTTTCC--------------C----------------------------------
T ss_pred ------------------------Chhhhcc--------------cccc---------c-chh-----------------
Confidence 0000000 0000 0 000
Q ss_pred CCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccch
Q psy10046 474 SEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLW 553 (805)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (805)
+ +.+.
T Consensus 233 ----------~----------------------------------------------------~~~~------------- 237 (451)
T 1pw4_A 233 ----------K----------------------------------------------------AEQE------------- 237 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------h----------------------------------------------------hhcc-------------
Confidence 0 0000
Q ss_pred hhhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccc
Q psy10046 554 VQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFT 633 (805)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (805)
T Consensus 238 -------------------------------------------------------------------------------- 237 (451)
T 1pw4_A 238 -------------------------------------------------------------------------------- 237 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhhe
Q psy10046 634 ENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVA 712 (805)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~ 712 (805)
.. .++.....+++++.++.+++..++....+.....++|.|+++ .|++..+++++.++.+++.++++++
T Consensus 238 --~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (451)
T 1pw4_A 238 --LT--------AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 307 (451)
T ss_dssp ---C--------CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cc--------cccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000111256788899999888888888888889999999988 7999999999999999999999999
Q ss_pred eeeecCCCCc--cchhHHHHHHHHHH-HHHhhhhhhh-hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhH
Q psy10046 713 LGWACDQPWL--NVKKTYAACLIGCG-VSTALMPLFA-TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYG 788 (805)
Q Consensus 713 ~g~l~dr~~~--gr~~~~~~~~~~~~-i~~l~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~g 788 (805)
.|++.|| + ++|+.+.++.++.+ ++++++.... .+.+.+.+..++.|++.+...+....++.+.+|++.+++++|
T Consensus 308 ~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 308 CGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHH--TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHH--HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 9999999 8 88888777766655 5555544322 356667777888898888888888899999999999999999
Q ss_pred HHHHHHhh-hhccCCCC
Q psy10046 789 LTLLAQGI-GNLVGPPL 804 (805)
Q Consensus 789 l~~~~~~i-g~~igp~i 804 (805)
+.+++..+ |++++|.+
T Consensus 386 ~~~~~~~~~g~~~~~~~ 402 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 99888754
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=2.2e-29 Score=283.53 Aligned_cols=344 Identities=13% Similarity=0.084 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q psy10046 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVG 241 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~ 241 (805)
|..++..++..++.......+++++|.+.+++|++..+++++.+++.++++++.+++|+++||+|||++++++.++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33344444444433333456778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHh-hccc-
Q psy10046 242 FVLS---CFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLI-SEYG- 315 (805)
Q Consensus 242 ~i~~---a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~-~~~g- 315 (805)
.+++ +++++++.+++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|.+++|++++++. ...+
T Consensus 105 ~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLV-GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHhccccccHHHHHH-HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999 88999999966 6999999999999999999999998 77999999999999999999999999998 5554
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCC
Q psy10046 316 ------------------------WRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTES 371 (805)
Q Consensus 316 ------------------------Wr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 371 (805)
||+.|++.+++.++..++.++...|+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------------------------- 236 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS--------------------------- 236 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT---------------------------
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc---------------------------
Confidence 99999988877766666655543331000
Q ss_pred CCCCHHHHHHHHhcCCCccchhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccc
Q psy10046 372 DMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELE 451 (805)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (805)
++. +
T Consensus 237 -------------------------------------------------~~~------------------~--------- 240 (438)
T 3o7q_A 237 -------------------------------------------------DNH------------------S--------- 240 (438)
T ss_dssp -------------------------------------------------TCC------------------C---------
T ss_pred -------------------------------------------------ccc------------------c---------
Confidence 000 0
Q ss_pred cCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCccccc
Q psy10046 452 DSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRR 531 (805)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (805)
.++
T Consensus 241 --~~~--------------------------------------------------------------------------- 243 (438)
T 3o7q_A 241 --DAK--------------------------------------------------------------------------- 243 (438)
T ss_dssp --CSS---------------------------------------------------------------------------
T ss_pred --ccc---------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccccCCccccccccccccchhhhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccc
Q psy10046 532 QFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDY 611 (805)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (805)
.
T Consensus 244 -------~------------------------------------------------------------------------ 244 (438)
T 3o7q_A 244 -------Q------------------------------------------------------------------------ 244 (438)
T ss_dssp -------T------------------------------------------------------------------------
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccchhheeccccccccccccCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhc-C
Q psy10046 612 SFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDF-VTNQ-G 689 (805)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~-~~~~-G 689 (805)
.+..+.. .++++++.++..++..++..........++|.| +++. |
T Consensus 245 ----------------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 291 (438)
T 3o7q_A 245 ----------------------------GSFSASL-----SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPG 291 (438)
T ss_dssp ----------------------------TSHHHHH-----HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ----------------------------cchhhhH-----HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 0000000 145678888888888888888888888999999 8875 9
Q ss_pred CChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchh
Q psy10046 690 LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSC 769 (805)
Q Consensus 690 ~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 769 (805)
++..+++++.++..++.++++++.|++.|| +++|+++.++.++.+++++++. ..++.+. .+..++.|++.+..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIAMALCLISA-FAGGHVG-LIALTLCSAFMSIQYPT 367 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHH-HCCHHHH-HHHHHHHHHHHTTHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHH-HcCCcHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999988888888777666 3444443 44457788888999999
Q ss_pred hhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 770 TPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 770 ~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
...+..+.+|++ ++.+.++.. +..+|++++|++
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 999989999866 888888877 667888887754
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=1.1e-27 Score=264.54 Aligned_cols=333 Identities=14% Similarity=0.043 Sum_probs=264.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc
Q psy10046 171 INMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT 250 (805)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~ 250 (805)
..++.......+.+.+|.+.+++|.+..+.+++.+++.+++.++.+++|+++||+|||++++++.++.+++.++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 87 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS 87 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc
Confidence 33333344456677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy10046 251 IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 251 ~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~ 329 (805)
++.+++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|.+++|++++++.+..|||+.|++.+++.++
T Consensus 88 ~~~l~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 88 LTVLIA-ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999866 6999999999999999999999987 78999999999999999999999999999989999999988877666
Q ss_pred HHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccccc
Q psy10046 330 LCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSS 409 (805)
Q Consensus 330 ~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (805)
..++.++..|+... . +
T Consensus 167 ~~~~~~~~~~~~~~-----~----~------------------------------------------------------- 182 (375)
T 2gfp_A 167 VTFSMARWMPETRP-----V----D------------------------------------------------------- 182 (375)
T ss_dssp HHCCCCCSSCCCST-----T----T-------------------------------------------------------
T ss_pred HHHHHHHHCcccCC-----C----C-------------------------------------------------------
Confidence 55543333221000 0 0
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCC
Q psy10046 410 VINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVES 489 (805)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (805)
+++ + +
T Consensus 183 ----------~~~-------------------~-------------~--------------------------------- 187 (375)
T 2gfp_A 183 ----------APR-------------------T-------------R--------------------------------- 187 (375)
T ss_dssp ----------CCC-------------------C-------------C---------------------------------
T ss_pred ----------ccc-------------------c-------------c---------------------------------
Confidence 000 0 0
Q ss_pred CCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccc
Q psy10046 490 DGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLH 569 (805)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (805)
. +..
T Consensus 188 -------------------------------------------------~----------~~~----------------- 191 (375)
T 2gfp_A 188 -------------------------------------------------L----------LTS----------------- 191 (375)
T ss_dssp -------------------------------------------------T----------TTC-----------------
T ss_pred -------------------------------------------------H----------HHH-----------------
Confidence 0 000
Q ss_pred cccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhh
Q psy10046 570 SKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGM 649 (805)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (805)
T Consensus 192 -------------------------------------------------------------------------------- 191 (375)
T 2gfp_A 192 -------------------------------------------------------------------------------- 191 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHH
Q psy10046 650 FDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTY 728 (805)
Q Consensus 650 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~ 728 (805)
..+++|+|.++..++..++..........++|.|+++ .|+++.+++++....+++.++++++.+++.|| ++++.
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r--~~~~~-- 266 (375)
T 2gfp_A 192 -YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR--FSTLM-- 266 (375)
T ss_dssp -STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH--HHHHH--
T ss_pred -HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--
Confidence 0145678888888888888888888888889998887 79999999999999999999999999999999 77622
Q ss_pred HHHHHH-HHHHHh--hhhhh-hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 729 AACLIG-CGVSTA--LMPLF-ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 729 ~~~~~~-~~i~~l--~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
..+... ..++++ .+... ..+.+.+++..++.|++.+...+....++.+.+| ++++++.|+.+.+..+|.+++|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 267 WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 222222 222222 11111 2355666677888899999999999999999998 899999999999999999999986
Q ss_pred C
Q psy10046 805 A 805 (805)
Q Consensus 805 a 805 (805)
+
T Consensus 346 ~ 346 (375)
T 2gfp_A 346 S 346 (375)
T ss_dssp C
T ss_pred H
Confidence 4
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.4e-26 Score=264.95 Aligned_cols=197 Identities=15% Similarity=0.166 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIA-FSFGLLYIEFLNEFGA--------SKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSM 230 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~-~~~~~~~p~i~~~~g~--------s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~v 230 (805)
+.|.+.+++.+..+ .+|++ ..++..+|.+.++|+. +....+++.+++.+|+++|++++|+++||+|||++
T Consensus 9 y~~~i~~~a~lg~~-~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 9 YIFSITLVATLGGL-LFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 33555444444333 44554 3355667888888743 34567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHH
Q psy10046 231 TIVAGIISGVGFVLSC------------------FSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSL 291 (805)
Q Consensus 231 lii~~~l~~i~~i~~a------------------~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi 291 (805)
++++.+++.++.++++ +++|++++++ +|+++|+|.|+..+....+++|+.| ++|++..++
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~-~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI-YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 9999999999999998 4789999966 6999999999999999999999998 779999999
Q ss_pred HHHHhhHHHhhHHHHHHHHhhc--------cchHHHHHHHHHHHHHHHHHHHh-ccCCchhhhhhchHHHHHhhhc
Q psy10046 292 GSTGTGFGTTVYAPITSYLISE--------YGWRGTVLLLSGTFFNLCVCGAI-MRDPEWWTLEQNKEKDLKSIKG 358 (805)
Q Consensus 292 ~~~~~~lG~~lgp~i~~~l~~~--------~gWr~~f~i~~~~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~l~~ 358 (805)
...+..+|.++++.++..+... .+||+.+.+.++..++.++..++ .++|+|+..+++.+++.+.+++
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence 9999999999999888877643 34777776666655555444433 4678888888888888776654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=1.3e-25 Score=257.00 Aligned_cols=153 Identities=13% Similarity=0.171 Sum_probs=136.6
Q ss_pred HHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q psy10046 183 GLLYIEFLNE-----FGASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIISGVGFVLSCFSRTIEHMYL 256 (805)
Q Consensus 183 ~~~~p~i~~~-----~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i 256 (805)
..+.+++.+. +|++..+++++.+++.+++.++.+++|+++|| +|||++++++.++++++.++++++++++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344555566 99999999999999999999999999999999 89999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cc--hhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFE-KK--RGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p-~~--rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
.|++.|++.+...+...+++.+++| ++ |+.+++++..+..+|.+++|++++++.+..|||+.|++.++..++.+++
T Consensus 114 -~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 114 -SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999987 56 7888998999999999999999999999999999999987766665555
Q ss_pred HHh
Q psy10046 334 GAI 336 (805)
Q Consensus 334 ~~~ 336 (805)
.++
T Consensus 193 ~~~ 195 (491)
T 4aps_A 193 YYF 195 (491)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=1.3e-21 Score=225.91 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhcC-cHHHH
Q psy10046 183 GLLYIEFLNEFG------ASKSKTAWIGSLFMAVPLLLGPVASAFVEKF-GCRSMTIVAGIISGVGFVLSCFSR-TIEHM 254 (805)
Q Consensus 183 ~~~~p~i~~~~g------~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~-Grr~vlii~~~l~~i~~i~~a~a~-~~~~l 254 (805)
..+.+++.+++| ++..+++++.+++.+++.++.+++|+++||+ |||++++++.++++++.+++++++ +++.+
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF 112 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 334455677899 9999999999999999999999999999999 999999999999999999999998 99988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHH---HHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSL---GSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi---~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
++ .|++.|++.+...+...+++.+++| ++|+++.++ +..+..+|.+++|++++++.+..|||+.|++.+++.++.
T Consensus 113 ~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 113 YT-GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HH-HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 66 6999999999999999999999997 668776666 888999999999999999999899999999988776665
Q ss_pred HHHHHh
Q psy10046 331 CVCGAI 336 (805)
Q Consensus 331 ~i~~~~ 336 (805)
+++.++
T Consensus 192 ~~~~~~ 197 (524)
T 2xut_A 192 TVFFWL 197 (524)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=2.3e-22 Score=226.02 Aligned_cols=149 Identities=11% Similarity=-0.018 Sum_probs=107.6
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhc-C---CChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQ-G---LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTY 728 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-G---~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~ 728 (805)
++++++.++.+++..++....+..+..++|.|+.+. + .+....+++.++..++.+++.++.|+++|| ++||+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~l 292 (417)
T 2cfq_A 215 ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR--IGGKNAL 292 (417)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHH
T ss_pred HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcHHHHH
Confidence 346677777666654444444444445577776552 3 223445667777778888999999999999 9999988
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHH-HHHHhhhhccCCCC
Q psy10046 729 AACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLT-LLAQGIGNLVGPPL 804 (805)
Q Consensus 729 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~-~~~~~ig~~igp~i 804 (805)
.++.++.++.++++. ...+.+.+++..++.+++.+...+....+++|.+|++.||+++|+. ++.+++|+++||.+
T Consensus 293 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 293 LLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 888877777666555 3445555666666667776666667788999999999999999994 78888999888864
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.29 E-value=9.1e-11 Score=131.59 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHHHHH-HHHHHHHhcC--cHHH
Q psy10046 180 FSFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF--GCRSMTIVAGIISG-VGFVLSCFSR--TIEH 253 (805)
Q Consensus 180 ~~~~~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~--Grr~vlii~~~l~~-i~~i~~a~a~--~~~~ 253 (805)
..+..+.|.+.++ +|.+..+++++.+++.++..++.+++|+++||+ |||+.++++.++.. ++.++..+.+ +.+.
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 3444555666666 899999999999999999999999999999999 99999888877776 6666666653 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhH-HHhhHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGF-GTTVYAPITSYLISEYGWRGTVLLLSGTFFNLC 331 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~l-G~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~ 331 (805)
+++ .-++.|++.+...+....++.+.+| ++||+++|+......+ |..++|.+.+++.+..||++.|++.+++.++..
T Consensus 349 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 349 DMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHH-HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 545 4578899888888888888888888 5699999999999999 999999999999999999999999888777766
Q ss_pred HHHHhc
Q psy10046 332 VCGAIM 337 (805)
Q Consensus 332 i~~~~~ 337 (805)
++.++.
T Consensus 428 ~~~~~~ 433 (451)
T 1pw4_A 428 ILLIVV 433 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.23 E-value=1.7e-10 Score=129.07 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=124.5
Q ss_pred HHHHHHHHH-HHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q psy10046 181 SFGLLYIEF-LNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTF 258 (805)
Q Consensus 181 ~~~~~~p~i-~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~ 258 (805)
......|.+ .++ +|.+..++++..+++.++..++.+++|+++||+|||+++.++.++.+++.++..+.++.+.++. +
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 354 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-L 354 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-H
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-H
Confidence 333444555 555 5999999999999999999999999999999999999999999999999999888888876633 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHH
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~i~ 333 (805)
++.|++.+...+...+++.+.+|++++.+.++.. ...+|.+++|++.|++.+..| +++.|++.++..++.++.
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 7889999988998888888888877888888877 566999999999999999999 999998766554444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.11 E-value=6.9e-10 Score=124.13 Aligned_cols=140 Identities=12% Similarity=0.153 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 197 KSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276 (805)
Q Consensus 197 ~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~ 276 (805)
....++..++..++..++.++.|+++||+|||++++++.++.+++.++.++.++.+.+++ ..++.|++.+...+....+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI-LKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345677888888889999999999999999999999999888888888888888777755 4677788777666777788
Q ss_pred Hhhhcc-cchhHHHHH-HHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 277 IAFWFE-KKRGLACSL-GSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 277 l~~~~p-~~rg~a~gi-~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+.+.+| +.||.+.++ +..+..+|.+++|.++|++.+..|+...|++.+++.++..++.++.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 888888 669999998 4778889999999999999998899999998887777766665543
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.89 E-value=9.1e-08 Score=108.55 Aligned_cols=159 Identities=13% Similarity=0.030 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-----CcHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-----RTIEHM 254 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-----~~~~~l 254 (805)
+....+.+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+..+.+++.+..+.. .+...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 294 NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 344455678888889888888888888889999999999999999999999999888877776655432 222222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh------ccchHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGL-ALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS------EYGWRGTVLLLSGT 326 (805)
Q Consensus 255 ~i~~R~l~G~g~-g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~------~~gWr~~f~i~~~~ 326 (805)
+. -++...+. .+..+....+.+|.+| +.|+.++|+......+|.++++.+...+.+ ..++.+.|++.+++
T Consensus 374 -~~-~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 374 -LS-MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp -HH-HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HH-HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 21 12222222 2234566678889999 669999999998888888888777655533 35677788888888
Q ss_pred HHHHHHHHHhccCC
Q psy10046 327 FFNLCVCGAIMRDP 340 (805)
Q Consensus 327 ~~~~~i~~~~~~~p 340 (805)
+++.+++.+++.|.
T Consensus 452 ~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 452 GVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHheecC
Confidence 88887777666554
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.86 E-value=2.5e-09 Score=117.06 Aligned_cols=140 Identities=11% Similarity=0.038 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhh
Q psy10046 662 LVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTAL 741 (805)
Q Consensus 662 ~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~ 741 (805)
.+++..++...........+|.+.++.|.+..+.+++.+...++..++.++.|+++|| +|||+.+.++.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT--SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHH
Confidence 3445555666666666677888888899999999999999999999999999999999 99999999999998888887
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 742 MPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 742 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+. ..++++.+++..++.|++.+...+....++.|.+|+++|+.++|+.+....+|.++||.+
T Consensus 82 ~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 82 AV-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 77 467788888889999999999999999999999999999999999999999999988764
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.85 E-value=4.3e-09 Score=120.81 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cC------CChhhHHHHHHHHHHHHHhhhheeeeecCCCCc-cchhHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTN-QG------LSKEEATSILSYIGVTNTVGMVALGWACDQPWL-NVKKTYA 729 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G------~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~-gr~~~~~ 729 (805)
+.++.+++..++...+++....+++.|+.+ .| ++..+++++.+.+.++.+++.+++|+++|| + |||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~~ 89 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTIL 89 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHH
Confidence 445666677777777777778888888765 78 999999999999999999999999999999 8 9999999
Q ss_pred HHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHH---HHHHHhhhhccCCCCC
Q psy10046 730 ACLIGCGVSTALMPLFAT-NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGL---TLLAQGIGNLVGPPLA 805 (805)
Q Consensus 730 ~~~~~~~i~~l~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl---~~~~~~ig~~igp~ia 805 (805)
++.++.+++.+++. ... +.+.+++..++.|++.+...+....++.+.+|+++|+.+.++ .++...+|.++||.++
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 90 WLSLIYCVGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888887776 455 778888888999999999999999999999999999766555 8888999998888763
No 14
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.82 E-value=4e-09 Score=119.96 Aligned_cols=144 Identities=9% Similarity=0.031 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh------cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCc-cchhHHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTN------QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWL-NVKKTYAA 730 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~------~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~-gr~~~~~~ 730 (805)
+.++.+++..++...+++....+++.|+++ .|++..+++++.+...++..++.+++|+++|| + |||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~~g~r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR--IIGARPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccchHHHHH
Confidence 356666667777777777777888888875 79999999999999999999999999999999 5 99999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccc--hhhhhHHHHHHHhhhhccCCCC
Q psy10046 731 CLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDR--FATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 731 ~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.++.+++.+++. ..++.+.+++..++.|++.+...+....++.|.+|+++ |+.++++.++...+|.++||.+
T Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 91 GGVLIMLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 9999988888777 46678888888899999999999999999999999888 8888998999999999988764
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.28 E-value=39 Score=20.30 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=11.8
Q ss_pred HHHHHHhhhCChHH
Q psy10046 217 VASAFVEKFGCRSM 230 (805)
Q Consensus 217 ~~G~LsDr~Grr~v 230 (805)
++|.|..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 47889999999865
Done!