RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10046
(805 letters)
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 172 bits (437), Expect = 2e-46
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 8/189 (4%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSF----GLLYIEFLNEFGASKSKTAWIGSLFMAVP 211
PDGGWGW+V+ A F G +++F + + E F A+ S+TAWI S+ +AV
Sbjct: 12 PDGGWGWVVLGATFVSI----GFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVL 67
Query: 212 LLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYV 271
GP++S V +FGCR + I G+++ +G +L+ FS + +YLT G + G+GLA ++
Sbjct: 68 YAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQ 127
Query: 272 TAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLC 331
++ + +F ++R LA L G+ + AP+ YL +GWRG+ L+L G + C
Sbjct: 128 PSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCC 187
Query: 332 VCGAIMRDP 340
VCGA+MR
Sbjct: 188 VCGALMRPV 196
Score = 82.1 bits (203), Expect = 2e-16
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 651 DFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGM 710
DFS+F FL+ +++F F P +L + ++G+ + EA +LS IG +
Sbjct: 234 DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFAR 293
Query: 711 VALGWACDQPWL--NVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFS 768
+ G W+ +V+ ++ L+ G++ L L A +Y L+ C+ FG+ F S +
Sbjct: 294 PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-AGDYTGLVIYCIFFGLSFGSVGA 352
Query: 769 CTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
+L++LV RF++A GL + + L+GPPLA
Sbjct: 353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 100 bits (251), Expect = 8e-23
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 5/178 (2%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+++ FF++ G+ + G S S+ I S F L +A
Sbjct: 1 LLLLFLGFFLSGLDRGL---LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYL 57
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281
++FG R + ++ ++ +G +L F+ ++ + L L G+G Y A IA WF
Sbjct: 58 SDRFGRRRVLLLGLLLFALGSLLLAFASSLW-LLLVGRFLLGLGGGALYPAAAALIAEWF 116
Query: 282 -EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMR 338
K+RG A L S G G G + + L GWR L+L+ L + +
Sbjct: 117 PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 77.4 bits (191), Expect = 4e-15
Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 29/198 (14%)
Query: 609 WDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTI 668
W + F + ++ +L+ + LL++++
Sbjct: 152 WRWLFLILAILGLLLALLLLFLLRL--------------------------LLLLALAFF 185
Query: 669 LL-FTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKT 727
LL F ++ + + GLS EA +LS G+ +G + G D +
Sbjct: 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD-RLGRRRLL 244
Query: 728 YAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAY 787
L+ + L+ L + L+ L G F + EL P + TA
Sbjct: 245 LLIGLLLAALGLLLLALAPSLALLLVALLL-LGFGLGFAFPALLTLASELAPPEARGTAS 303
Query: 788 GLTLLAQGIGNLVGPPLA 805
GL +G +GP LA
Sbjct: 304 GLFNTFGSLGGALGPLLA 321
Score = 69.7 bits (171), Expect = 1e-12
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 3/146 (2%)
Query: 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
LL+ + L + L + GLS +A I+S + +G + G+ D+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 720 PWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVP 779
++ L+ + + L+ FA++ W LL G+ + + ++ E P
Sbjct: 61 --FGRRRVLLLGLLLFALGSLLLA-FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 780 LDRFATAYGLTLLAQGIGNLVGPPLA 805
A GL G+G L+GP L
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLG 143
Score = 64.3 bits (157), Expect = 8e-11
Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 4/172 (2%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVA 218
+ ++L + +L E G S ++ + SLF +L +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 219 SAFVEKFGCRSMTIVAG-IISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSI 277
++ G R + ++ G +++ +G +L + ++ + L LL G GL ++ +
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL-ALLLVALLLLGFGLGFAFPALLTLA 290
Query: 278 A-FWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFF 328
+ + RG A L +T G + + L+ G+ G L+L+
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342
Score = 46.9 bits (112), Expect = 2e-05
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 13/192 (6%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPL---LLGP 216
++L F+ G G + I E+ K + +G L L
Sbjct: 85 SSLWLLLVGRFLLGLGGGALYPAAAALI---AEWFPPKERGRALGLFSAGFGLGALLGPL 141
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
+ E G R + ++ I+ + +L F + L LA L+ Y +
Sbjct: 142 LGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL----LLLLALAFFLLSFGYYGLLTY 197
Query: 277 IAFWFEKKRGL---ACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333
+ + ++ GL L + G G + A + L G R +LL+ L +
Sbjct: 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257
Query: 334 GAIMRDPEWWTL 345
+ L
Sbjct: 258 LLALAPSLALLL 269
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 92.5 bits (230), Expect = 4e-20
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 4/173 (2%)
Query: 165 VLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK 224
+ A F+ G + LY+ + G S ++ + + F L P+A ++
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYL--AEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR 58
Query: 225 FGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF-EK 283
FG R + ++ ++ +G +L F+ ++ + L +L G+G + A IA WF +
Sbjct: 59 FGRRRVLLIGLLLFALGLLLLLFASSLW-LLLVLRVLQGLGGGALFPAAAALIADWFPPE 117
Query: 284 KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+RG A L S G G G + + L S +GWR L+L+ V A+
Sbjct: 118 ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170
Score = 67.5 bits (165), Expect = 6e-12
Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 7/199 (3%)
Query: 609 WDYSFYLAGFWIIISGILIAV-IPFTENTSWMDDARELIVGMFD--FSMFLELHFLLVSI 665
W +F + +++ +L A+ +P S E + + L L + +
Sbjct: 150 WRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL 209
Query: 666 STILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVK 725
+ +L F YL + GLS A +L G+ +G + LG D L +
Sbjct: 210 ALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSD--RLGRR 267
Query: 726 KTYAACLIGCGVSTALMPLFA--TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRF 783
+ L+ ++ + L + + LL L G F ++ +L P +
Sbjct: 268 RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEER 327
Query: 784 ATAYGLTLLAQGIGNLVGP 802
TA GL A +G +GP
Sbjct: 328 GTASGLYNTAGSLGGALGP 346
Score = 62.1 bits (151), Expect = 3e-10
Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 3/144 (2%)
Query: 662 LVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPW 721
L + + ++ + G+S E +L+ + + G D+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-- 58
Query: 722 LNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD 781
++ L+ + L+ LFA++ W LL + G+ + F ++ + P +
Sbjct: 59 FGRRRVLLIGLLLFALGL-LLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPE 117
Query: 782 RFATAYGLTLLAQGIGNLVGPPLA 805
A GL G+G +GP L
Sbjct: 118 ERGRALGLLSAGFGLGAALGPLLG 141
Score = 45.5 bits (108), Expect = 6e-05
Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 136 VPDSEDEEEGNTREEEDSKIPDGGWG------WMVVLAAFFINMAGDGIAFSFGLLYIEF 189
+P E + EE W + +L A + ++ LY E
Sbjct: 172 LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQE- 230
Query: 190 LNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR 249
G S + L + + + ++ G R ++A ++ + +
Sbjct: 231 --VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288
Query: 250 TIE--HMYLTFGLLAGIGLALSYVTAVVSIA-FWFEKKRGLACSLGSTGTGFG 299
E L LL G G L + ++ +++RG A L +T G
Sbjct: 289 LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLG 341
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 86.0 bits (213), Expect = 9e-18
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
W VL I G +++ LL FG + A +L + + PV
Sbjct: 2 WWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLL 61
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281
+KFG R++ ++ GI+ G+GF + ++ +YLT+GL A G+ ++Y A+ + WF
Sbjct: 62 ADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGL-ASAGVGIAYGIALNTAVKWF 120
Query: 282 EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI----- 336
KRGLA + G G G+ + +P+ + +I+ G + + F + V GA
Sbjct: 121 PDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180
Query: 337 ---------------------MRDPEWWTL 345
+R P++W L
Sbjct: 181 PGQLIKTNIEVSVKDYTVWEMLRTPQFWVL 210
Score = 32.4 bits (74), Expect = 1.1
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 689 GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATN 748
GLS +S + N G LG D+ K I V A M F
Sbjct: 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGIS-AVGMAAML-FIPM 292
Query: 749 YWALLFTCLSFGIFF--ASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVG 801
+LF +FF S P ++ ++ A YG A+ + + G
Sbjct: 293 LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFG 347
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 69.4 bits (170), Expect = 2e-12
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 2/160 (1%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+V+ + M + + + L G ++ +LF+ L P+ F
Sbjct: 3 LQLVIGVVCMCMIA-NLQYGWTLFVNPIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWF 61
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281
V+K+G R + + GI+ G+G+VL+ ++ ++ +Y ++AGIG Y T V + WF
Sbjct: 62 VDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAA-VVAGIGAGAVYGTCVGNALKWF 120
Query: 282 EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVL 321
KRGLA L + G G G + + +I G++ +
Sbjct: 121 PDKRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQAAFM 160
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 57.4 bits (139), Expect = 1e-08
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 27/208 (12%)
Query: 161 GWMVVLAAFFINMAGDG-----IAFSFGLLYIEFLNEFGASKSKTAWIGS--LFMAVP-- 211
W ++ +F I M DG + F+ + E+G + ++ S L
Sbjct: 15 QWRAIILSFLI-MLMDGYDLAAMGFAAPAI----SAEWGLDPVQLGFLFSAGLIGMAFGA 69
Query: 212 LLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGL--ALS 269
L GP+A ++ G R + + + ++ V +L + + + L LAG+GL +
Sbjct: 70 LFFGPLA----DRIGRRRVLLWSILLFSVFTLLCALATNVTQL-LILRFLAGLGLGGLMP 124
Query: 270 YVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329
+ A+VS + ++ RG A L G G V + +LI +GWR L G
Sbjct: 125 NLNALVS-EYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR--SLFYVGGIAP 181
Query: 330 LCVCGAIMR---DPEWWTLEQNKEKDLK 354
L + +MR + + + + E +
Sbjct: 182 LLLLLLLMRFLPESIDFLVSKRPETVRR 209
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 50.3 bits (121), Expect = 2e-07
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 205 SLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264
+ + L+ P++ ++FG + + +V I + + S I + + L G
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIAR-FLQGF 63
Query: 265 GLALSYVTAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLL 323
G A + V IA + ++RG+A L S G G + P+ L GWR L L
Sbjct: 64 GAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123
Query: 324 S 324
+
Sbjct: 124 A 124
Score = 34.9 bits (81), Expect = 0.054
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 725 KKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFA 784
K L +STA+ L ++N L+ G A ++ ++ P +
Sbjct: 28 KPVLLVGLFIFVLSTAMFAL-SSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86
Query: 785 TAYGLTLLAQGIGNLVGPPL 804
A GL +G L+GPPL
Sbjct: 87 VALGLMSAGIALGPLLGPPL 106
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 53.5 bits (129), Expect = 2e-07
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 689 GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATN 748
GLS + + S VG GW D+ +KT A ++ GV T L FA
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR--FGARKTLAVFIVIWGVFTGLQA-FAGA 81
Query: 749 YWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
Y +L + G A F +I+ P ATA + AQG+G ++G PL
Sbjct: 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV 138
Score = 46.2 bits (110), Expect = 4e-05
Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
Query: 168 AFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGC 227
IN D SF ++ + G S ++ ++ S F ++ +++FG
Sbjct: 2 VTVINYL-DRANLSFAAPMLQ--EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGA 58
Query: 228 RSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF-EKKRG 286
R V +I GV L F+ +Y+ LL G A + ++ +A WF +R
Sbjct: 59 RKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLL-GAAEAPFFPGIILIVASWFPASERA 117
Query: 287 LACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325
A S+ ++ G G + P+ +++ + W+ ++ G
Sbjct: 118 TAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ-WAFIIEG 155
Score = 39.2 bits (92), Expect = 0.007
Identities = 48/234 (20%), Positives = 85/234 (36%), Gaps = 42/234 (17%)
Query: 605 VTQIWDYSFYLAGFWIIISGILIAVIPFT------ENTSWMDDARELIV---GMFDFSMF 655
+ W ++F + G + GI+ V+ + W+ + + IV + +
Sbjct: 143 IHFSWQWAFIIEG----VLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGK 198
Query: 656 LELHFLLVSISTILL-----------FTWFVIPYFYLTDF----VTNQGLSKEEATSILS 700
I +L F + F+LT F V +GLS EA + S
Sbjct: 199 GPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMAS 258
Query: 701 YIGVTNTVGMVALGWACDQPWLNVKKTY------AACLIGCGVSTALMPLFATNYWALLF 754
G+ +GM+ G D L +++ +I V + LM FATNY + +
Sbjct: 259 LPGIVGFIGMILGGRLSD---LLLRRGKSLVFARKTAIIAGLVLSLLM--FATNYVNIPY 313
Query: 755 TCLSF---GIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
L+ G F + ++ + P + GL +G +VGP +
Sbjct: 314 AALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI 367
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 52.0 bits (123), Expect = 7e-07
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+ LAA + + ++ + LL G + S F + +A
Sbjct: 5 LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPL 62
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG-LLAGIGLALSYVTAVVSIAFW 280
+++G R + I+ ++ +G +L + + L LL G+G A ++ W
Sbjct: 63 GDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEW 122
Query: 281 F--EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318
F +RGLA L + G G P+ + L+ G
Sbjct: 123 FPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 51.5 bits (124), Expect = 1e-06
Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 25/217 (11%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLY-IEFLNEFGASKSKTA---------WIGSLFMA 209
+ L F + G L I+F FGA S A I S+F
Sbjct: 1 LALVAALGGF---LFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSV 57
Query: 210 VPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH-MYLTFGLLAGIGLAL 268
L+ A ++FG + ++ ++ +G +L F++ M + ++ G+G+
Sbjct: 58 GCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGG 117
Query: 269 SYVTAVVSIA-FWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY----GWRGTVLLL 323
V + I+ +K RG SL G FG V A I +++Y GWR + L
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNSDGWR--IPLG 174
Query: 324 SGTFFNLCVCGAIMRDPE--WWTLEQNK-EKDLKSIK 357
+ + ++ PE W + + K E+ +
Sbjct: 175 LQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLA 211
Score = 30.7 bits (70), Expect = 3.8
Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 47/237 (19%)
Query: 609 WDYSFYLAGFWIIISGILIAVIPFT------------------------ENTSWMDDARE 644
W L I+ I + +P + + + + ++
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKD 228
Query: 645 LIVGMFDFSMFLELHFLLVSISTILLFTWFVIP-----------YFYLTDFVTNQGLSKE 693
+ + L L ++ ++Y GLS
Sbjct: 229 SLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDS 288
Query: 694 EATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLF-------- 745
+I+ +GV N V + D+ + G + ++ +
Sbjct: 289 LLVTII--VGVVNFVFTFIAIFLVDR--FGRRPLLLLGAAGMAICFLVLGVALLGVAKSK 344
Query: 746 ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGP 802
A++F L F +I+ EL PL A + A + N +
Sbjct: 345 GAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIG 401
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 48.4 bits (116), Expect = 9e-06
Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+++L + +N + L Y ++ G + + + + +L P+
Sbjct: 224 LLILLLLYLLNALAMAVRNGLLLYYFTYV--LGNAGL-FSVLLLIGTIAAILGAPLWPWL 280
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH-MYLTFGLLAGIGLALSY------VTAV 274
++FG + ++ +++ +G VL F ++L +LAGIGL L+ + V
Sbjct: 281 AKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADV 340
Query: 275 VSIAFWFEKKR--GLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTV 320
V W KR G+ SL S G + I L++ G+
Sbjct: 341 VDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVANA 388
Score = 39.1 bits (92), Expect = 0.007
Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 21/153 (13%)
Query: 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
+LL +++ + + +Y T + N GL + +L + +G W
Sbjct: 231 YLLNALAMAVRNGLLL---YYFTYVLGNAGL----FSVLLLIGTIAAILGAPLWPWLAK- 282
Query: 720 PWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLS-FGIFFASNFSCTPIILVELV 778
K+T+ ++ + L+ L + GI +L ++V
Sbjct: 283 -RFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVV 341
Query: 779 PLDRF-------ATAYGLTL----LAQGIGNLV 800
+ + L L +G +
Sbjct: 342 DYGEWKTGKRREGITFSLYSFADKLGGALGGAI 374
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 47.7 bits (114), Expect = 2e-05
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 205 SLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264
S F LL V ++FG + + +++ +++ V VL+ FS ++L F LL G+
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT-VFLVFRLLVGM 192
Query: 265 GLALSYVTAVVSIAFWFEKK-RGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLL 323
G+ +V AVV + KK R + +L G V P+ +Y I + WR L +
Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG-LVLLPLVAYFIPD--WRWLQLAV 249
Query: 324 SGTFFNLCV-CGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEM 382
S F + + P W + E+ LK ++ + E + + + K++
Sbjct: 250 SLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE--VLSLSLEKDL 307
Query: 383 LESGVTPDFIE 393
S F++
Sbjct: 308 SSSKKQYSFLD 318
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 44.1 bits (105), Expect = 2e-04
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+ LAAF I GLL + G S+ + + + L P+ +
Sbjct: 16 LALALAAFAIGTTEFVPV---GLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALL 71
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI------GLALSYVTAVV 275
+ R + + + V +LS + + + L LAG+ +A + +V
Sbjct: 72 TGRLERRRLLLGLLALFIVSNLLSALAPSFA-VLLLARALAGLAHGVFWSIAAALAARLV 130
Query: 276 SIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325
KRG A +L TG T + P+ ++L +GWR T L ++
Sbjct: 131 P-----PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV 175
Score = 37.2 bits (87), Expect = 0.033
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 661 LLVSISTILLFTWFVIPYFYLTDFVTNQ-GLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
LL ++T L T Y Y+ F+ + G S + +L G+ +G + G D+
Sbjct: 214 LLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273
Query: 720 PWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFAS 765
++ A L+ ++ + + L +G F+
Sbjct: 274 ---GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSP 316
Score = 33.7 bits (78), Expect = 0.38
Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 9/163 (5%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIE-FLNEFGASKSKTAWIGSLFMAVPLLLGPVA 218
G ++ L A F+ M G ++ YI FL + L + +G +
Sbjct: 211 PGVLLGLLATFLFMTGHFALYT----YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLL 266
Query: 219 SAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALS--YVTAVVS 276
+ G R I + + L + T L LL G A S
Sbjct: 267 GGRLADRGPRRALIA--ALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTR 324
Query: 277 IAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGT 319
+A LA SL G + A + ++ G+ T
Sbjct: 325 LARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAAT 367
Score = 29.5 bits (67), Expect = 7.6
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 727 TYAACLIGCGVSTALMPLFATNYWALLF----TCLSFGIFFASNFSCTPIILVELVPLDR 782
A ++ +S A ++ LL L+ G+F++ + + LVP +
Sbjct: 84 LLALFIVSNLLSA-----LAPSFAVLLLARALAGLAHGVFWSIAAA----LAARLVPPGK 134
Query: 783 FATAYGLTLLAQGIGNLVGPPLA 805
A L + ++G PL
Sbjct: 135 RGRALALVFTGLTLATVLGVPLG 157
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 43.4 bits (103), Expect = 3e-04
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVA--- 218
W+ LA F + + F L + ++FG S+ + + A+P+L+G +
Sbjct: 17 WLSTLA-FDVGFM---VWTLFSPLGVFIKSDFGLSEGQKGLLV----AIPILVGALLRLP 68
Query: 219 -SAFVEKFGCRSMTIVAGIIS-----GVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVT 272
++FG R TI++ ++ G+ F ++ L GLL G+ A S+
Sbjct: 69 YGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---YPSTWQLLVIGLLLGLAGA-SFAV 124
Query: 273 AVVSIAFWFEKKR-GLACSLGSTGTG-FGTTVYAPITSYLISEYGWRG 318
+ + +F+F K++ GLA LG G G G V + + +G+
Sbjct: 125 GMPNASFFFPKEKQGLA--LGIAGAGNLGVAVAQLVAPLVAVAFGFLA 170
Score = 34.2 bits (79), Expect = 0.30
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 177 GIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGI 236
G + + + +FG S I LF + L P+ ++ G R +T+ +
Sbjct: 236 GFSAYLPMYLV---TQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFV 292
Query: 237 ISGVG-FVLSCFSRTIEH---------MYLTFGLLAGIGLALSY 270
+ +LS F H ++L + AG+G +
Sbjct: 293 GMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVF 336
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 41.1 bits (97), Expect = 0.002
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 12/146 (8%)
Query: 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIIS 238
F+ + + + + G SK++ +GS F + V ++ R I+S
Sbjct: 47 NFNLAMPAL--IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104
Query: 239 GVGFVLSCFSRTIEHMYLTFGLLA---GIGLALSYVTAVVSIAFWFEKK-RGLACSLGST 294
+ +L FS ++ + + L G+G T I WF +K RG S+ +T
Sbjct: 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART----ITHWFSRKERGTWWSIWNT 160
Query: 295 GTGFGTTVYAPITS--YLISEYGWRG 318
G + + + GWR
Sbjct: 161 SHNIGGALAPLVALLAFFAFHGGWRA 186
>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is
involved in active transport of cyanate. The cyanate
transporter in E.Coli is used to transport cyanate into
the cell so it can be metabolized into ammonia and
bicarbonate. This process is used to overcome the
toxicity of environmental cyanate [Transport and binding
proteins, Other].
Length = 355
Score = 40.1 bits (94), Expect = 0.003
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 16/153 (10%)
Query: 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLL----LGPVASAFVEKFGCRSMTIVAGI 236
S G L + + G S S L A+P+L L P+A +FG +
Sbjct: 18 SVGPLLPQIRSALGMSFSVAG----LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLL 73
Query: 237 ISGVGFVLSCFSRTIEHMYLTFG--LLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGST 294
+ G ++ R+ L F L G+G+A+ V I F ++ GL L S
Sbjct: 74 LIAAGILI----RSAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSM 129
Query: 295 GTGFGTTVYAPITSYLI--SEYGWRGTVLLLSG 325
G + A T L S W+ + +
Sbjct: 130 ALMGGAALAAAATVPLAQHSGGHWQQALAWWAL 162
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 38.5 bits (90), Expect = 0.012
Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 189 FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS 248
+ G+S S+ W+ + +M + P+ ++FG R + +++ +G +L +
Sbjct: 28 IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA 87
Query: 249 RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYAPIT 307
+E M + F ++ G G + ++ + +KRG A ++ + +
Sbjct: 88 PNLELM-IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLG 146
Query: 308 SYLISEYGWR 317
++I Y WR
Sbjct: 147 GWIIENYHWR 156
Score = 30.0 bits (68), Expect = 5.5
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 200 TAWIGSLFMAV---PLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYL 256
G + V P+L P+A +K R + + I+ VGF F+ T + +L
Sbjct: 290 ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFL 349
Query: 257 TFGL---LAGIGLALSYV-TAVVSIAFWFEKKRGLACSL--------GSTGTGFGTTVY 303
L + G G+ ++ ++++ K SL GS GT TT+
Sbjct: 350 AIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 38.0 bits (88), Expect = 0.016
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 10/199 (5%)
Query: 176 DGIAFSFGLLYIEFL--NEFGASKSKTAWIGSL-FMAVPLLLGPVASAFVEKFGCRSMTI 232
DG F + YI +L + G + + A++ + F+ P G + +KFG + + +
Sbjct: 30 DGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFG-GALFGLLADKFGRKPLMM 87
Query: 233 VAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTA-VVSIAFWFEKKRGLACSL 291
+ + VG LS + + M + G+G+A Y A ++ W + + A +
Sbjct: 88 WSIVAYSVGTGLSGLASGV-IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF 146
Query: 292 GSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEK 351
+G G G + A YGWR + G L V R PE E+ K
Sbjct: 147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV--GLLPVLLVIYIRARAPESKEWEEAKLS 204
Query: 352 DL-KSIKGASSCGSVSYRT 369
K + A S S+S +
Sbjct: 205 GKGKHSQSAWSVFSLSMKG 223
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 36.9 bits (86), Expect = 0.034
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 166 LAAFFINMAGDGI---AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFV 222
AA I++ G I A +L S S + M ++L P+A A
Sbjct: 5 FAAQLISLIGTAITQVALPLYVL------AGTGSASVLSLAALAGMLPYVVLSPIAGALA 58
Query: 223 EKFGCRSMT-----IVAGIISGVGFVLSCFSRTIEHMYLTFGLLA 262
+++ + + I A +++ + FV I +Y+ G+LA
Sbjct: 59 DRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILA 103
Score = 36.1 bits (84), Expect = 0.061
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 672 TWFVIPYFYLTDFVTNQGLSKEEATSI--LSYIGVTNTVGMVALGWACDQPWLNVKKTYA 729
T +P Y+ T A L Y+ ++ G +A D+ + KK
Sbjct: 18 TQVALP-LYVLAG-TGSASVLSLAALAGMLPYVVLSPIAGALA-----DR--YDRKKVMI 68
Query: 730 ACLIGCGVSTALMPLFA----TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFAT 785
+ V A++P A N W + I A +L +LVP ++
Sbjct: 69 GADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQ 128
Query: 786 AYGLTLLAQGIGNLVGPPLA 805
A L+ + + +VGP +
Sbjct: 129 ANSLSQAVRSLFYIVGPGIG 148
>gnl|CDD|130018 TIGR00943, 2a6301s02, monovalent cation:proton antiporter. This
family of proteins constists of bacterial multicomponent
K+:H+ and Na+:H+ antiporters. The best characterized
systems are the PhaABCDEFG system of Rhizobium meliloti
which functions in pH adaptation and as a K+ efflux
system and the MnhABCDEFG system of Staphylococcus
aureus which functions as a Na+:H+ antiporter.This
family is specific for the phaB and mnhB proteins
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 107
Score = 34.3 bits (79), Expect = 0.047
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Query: 233 VAGIISGVGFVLSCFSRTIEHM----YLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLA 288
VAG+++ +L + IE + L L GIGL L+ T V S WF
Sbjct: 14 VAGLLTASSLILITIAFGIETVRKILPLDPKRLIGIGLLLAIATGVGS---WF------- 63
Query: 289 CSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
G F T+V ++ ++ VL G F V G M
Sbjct: 64 -----LGKPFLTSVTGYFPLPILGKFELATAVLFDLGVF--CVVVGTTM 105
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 36.2 bits (84), Expect = 0.061
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 17/124 (13%)
Query: 689 GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTY-------AACLIGCGVSTAL 741
GLSK + +LS + + +G D+ N + A + G ST+L
Sbjct: 26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDR--SNPRVFLPIGLILCAIVNLFFGFSTSL 83
Query: 742 MPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVG 801
+ A WAL GIF + + + T + +G +
Sbjct: 84 WVMAA--LWALN------GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLL 135
Query: 802 PPLA 805
PPL
Sbjct: 136 PPLV 139
>gnl|CDD|130358 TIGR01291, nodJ, ABC-2 type transporter, NodJ family. Nearly all
members of this subfamily are NodJ which, together with
NodI (TIGR01288), acts to export a variety of modified
carbohydrate molecules as signals to plant hosts to
establish root nodules. The seed alignment includes a
highly divergent member from Azorhizobium caulinodans
that is, nonetheless, associated with nodulation. This
model is designated as subfamily in part because not all
sequences derived from the last common ancestral
sequence of Rhizobium sp. and Azorhizobium caulinodans
NodJ are necessarily nodulation proteins [Cellular
processes, Other, Transport and binding proteins,
Other].
Length = 253
Score = 35.6 bits (82), Expect = 0.074
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 245 SCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFW--------------FEKKRGLACS 290
S + + FGL G+G + V V AF FE
Sbjct: 25 SVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFAR 84
Query: 291 LGSTGTGFGTTVYAPIT--SYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDPEWWTL 345
+ T T + +Y PIT ++ E W T L+GT + V A + EWW+L
Sbjct: 85 MRVTRT-WEAMLYTPITVGDIVLGEVAWAATKASLAGTI--IGVVTATLGYIEWWSL 138
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 34.9 bits (80), Expect = 0.15
Identities = 47/219 (21%), Positives = 76/219 (34%), Gaps = 34/219 (15%)
Query: 609 WDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFD----------------- 651
W F+++ II + L IP E+ + L+ M D
Sbjct: 167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLA 226
Query: 652 FSM-------FLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGV 704
+M + +L+V + L++ I T + GLS +I+ + +
Sbjct: 227 AAMVQSAGKRWPTFVYLVVLVLFANLYSH-PIQDLLPTYLKADLGLSPHTVANIVVFSNI 285
Query: 705 TNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFA--TNYWALLFTCLSFGIF 762
VG G+ D WL +K Y L+ + +P+FA N L +
Sbjct: 286 GAIVGGCVFGFLGD--WLGRRKAYVCSLLAGQLLI--IPVFAIGANVAVLGLGLFFQQML 341
Query: 763 FASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVG 801
+ P L E P D+ A G T +GNL G
Sbjct: 342 VQGIWGILPKHLGEYFPTDQRAAGLGFTY---QLGNLGG 377
Score = 31.8 bits (72), Expect = 1.4
Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 4/159 (2%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
W AA+ + F L+ E EFG + A + S + + +
Sbjct: 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLW 70
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSY-VTAVVSIAFW 280
+++G R + + ++ G + F+ M L+ GIG+ Y +A I W
Sbjct: 71 GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITM-FIARLVIGIGMGGEYGSSAAYVIESW 129
Query: 281 FEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYG--WR 317
+ R A L +G G V A + S ++ +G WR
Sbjct: 130 PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWR 168
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed.
Length = 456
Score = 34.4 bits (80), Expect = 0.26
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 53/167 (31%)
Query: 617 GFW--IIISGILIAVIPFTENT--SWMDDARELIVGMFDFSMFLELHFLLVSISTILLFT 672
G W + +S +++ V+ + M+ E+ + LH LL I LL+
Sbjct: 94 GLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGY-----LHALLWGIPAYLLY- 147
Query: 673 WFVIPYFYLTDFVTNQGLSKEEATSILSYIG-----VTNTV------GMVALGWACDQPW 721
V+ F GL K + T ++ ++G N + G LG
Sbjct: 148 -QVLRSF-------IDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGG------ 193
Query: 722 LNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFS 768
+GCGV+TA++ YW ++F + I A F
Sbjct: 194 -----------VGCGVATAIV------YW-VMFLAMLIYIKRARRFR 222
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 34.2 bits (79), Expect = 0.28
Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQ-GLSKEEATSILSYIGVTNTVGMVALGWACD 718
FLL I T F + YL ++T GLS A +L + + + G D
Sbjct: 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD 280
Query: 719 Q----PWLNVKKTYAACLIGCGVSTALMPLF-ATNYWALLFTCLSFGIFFASNFSCTPII 773
+ P L + T A L+ LM L + ++ F L +
Sbjct: 281 RIGRRPVL-IIFTVLAALLA---VPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSF 336
Query: 774 LVELVPLD----RFATAYGL-TLLAQGIGNLVGPPLA 805
L EL P + + AY L + G + L
Sbjct: 337 LPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV 373
Score = 29.5 bits (67), Expect = 6.5
Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASA 220
L + +A + +L G S + + L + + + P++ A
Sbjct: 218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA 277
Query: 221 FVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH--MYLTFGLLAGIGLALSYVTAVVSIA 278
++ G R + I+ +++ + + ++ L F L+ G+ L T +
Sbjct: 278 LSDRIGRRPVLIIFTVLAAL-LAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSF 336
Query: 279 F 279
Sbjct: 337 L 337
>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401). This
family of proteins is found in bacteria. Proteins in
this family are typically between 357 and 735 amino
acids in length. The family is found in association with
pfam09925. There is a single completely conserved
residue K that may be functionally important.
Length = 321
Score = 33.8 bits (78), Expect = 0.29
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 201 AWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVL-----SCFSRTIEH-M 254
W+ +LF LLG +A AF F +V I+ + L S F R + +
Sbjct: 12 GWLAALF-----LLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQLALAL 66
Query: 255 YLTFGLLAGIGLALSYVTAVVSIAFWF 281
L LL GL +V++
Sbjct: 67 SLAGQLLLAFGLFDLLDESVLAALLLL 93
>gnl|CDD|130645 TIGR01583, formate-DH-gamm, formate dehydrogenase, gamma subunit.
This model represents the gamma chain of the gamma
proteobacteria (and Aquifex aolicus) formate
dehydrogenase. This subunit is integral to the
cytoplasmic membrane, consisting of 4 transmembrane
helices, and receives electrons from the beta subunit.
The entire E. coli formate dehydrogenase N
(nitrate-inducible form) has been crystallized. The
gamma subunit contains two cytochromes, heme b(P) and
heme b(C) near the periplasmic and cytoplasmic sides of
the membrane respectively. The electron acceptor quinone
binds at the cytoplasmic heme histidine ligand.
NiFe-hydrogenase and thiosulfate reductase contain
homologous gamma subunits, and these can be found
scoring in the noise of this model [Energy metabolism,
Anaerobic, Energy metabolism, Electron transport].
Length = 204
Score = 33.2 bits (76), Expect = 0.32
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFM--AVPLLLGPVAS 219
W+ ++ + G + F L E +K+ + G LF +P+ L
Sbjct: 14 WIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPMFLKWWRR 73
Query: 220 AFVEKFGCRSMTIVAGIISG 239
K+ R M V G +S
Sbjct: 74 MIPAKYDIRWMMKVGGYLSK 93
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 33.8 bits (78), Expect = 0.36
Identities = 33/207 (15%), Positives = 56/207 (27%), Gaps = 24/207 (11%)
Query: 613 FYLAGFWIIISGILIAVIPFT------ENTSWMDDARELIVGMFDFSMFLELHFLLVSIS 666
A +I IL+ F E + + F +F LL+ +
Sbjct: 186 QGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFL-LIFKNRPLLLLLLM 244
Query: 667 TILLFTWFVIP---YFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVAL-GWACDQPWL 722
+LLF F I Y +V E +L + + L
Sbjct: 245 NLLLFIAFNIRGSIMVYYVTYVLGDP---ELFAYLLLLASGAGLLIGLILWPRLVK--KF 299
Query: 723 NVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILV-ELVPLD 781
KK + L+ V L+ L+ L + P +V + V
Sbjct: 300 GKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG 359
Query: 782 RFAT-------AYGLTLLAQGIGNLVG 801
+ T Y + +G +
Sbjct: 360 EWKTGVRREGIVYSGMTFFRKLGLALA 386
>gnl|CDD|234293 TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705
subfamily. This family belongs to a larger family of
transporters of the sodium:solute symporter superfamily,
TC 2.A.21. Members of this strictly bacterial protein
subfamily are found almost invariably immediately
downstream from a member of family TIGR03647.
Occasionally, the two genes are fused.
Length = 552
Score = 33.0 bits (76), Expect = 0.75
Identities = 42/138 (30%), Positives = 54/138 (39%), Gaps = 52/138 (37%)
Query: 162 WMVVLAAFFINMAGDGIAFS--FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS 219
WM AA FI+MAG IAF GL Y+ W G + + LLL P
Sbjct: 47 WMS--AASFISMAG-LIAFLGYDGLAYL------------MGWTGGYVL-LALLLAP--- 87
Query: 220 AFVEKFGC----------------R----------SMTIVAGIISGVGFVLSCFSRTIEH 253
++ KFG R S T VAG + GVG V FSR +E
Sbjct: 88 -YLRKFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVV---FSRFLEV 143
Query: 254 MYLTFGLLAGIGLALSYV 271
+ T G+ G+ + Y
Sbjct: 144 DFET-GVFIGMAIVFFYA 160
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 32.6 bits (75), Expect = 0.98
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 626 LIAVIPFTENTSWMDDARELIVGMFDFSMFLELH 659
L +++P ++ D RE+I + D FLE
Sbjct: 276 LDSIVP--DDPRKPYDVREVIARLVDDGEFLEFK 307
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 32.7 bits (75), Expect = 1.0
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 21/115 (18%)
Query: 163 MVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFV 222
+ A + + G GI + + F N + + K ++ AV + A
Sbjct: 250 ITTSAVPPL-LIGIGIDYG-----VHFHNRYEEERRKGR---TVEEAVVEAIKHTGPA-- 298
Query: 223 EKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSI 277
++A + + GF+ S +I FG+L IG+ L++++++ +
Sbjct: 299 --------VLIAALTTAAGFLSLLTS-SIP-AIKEFGILLSIGIILAFLSSLTVL 343
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 31.8 bits (73), Expect = 1.0
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 6/127 (4%)
Query: 158 GGWGWMVVLAAFFINMAGDGIAF--SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLG 215
+ + A + + LL FL K ++ +L LL G
Sbjct: 21 VAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALLFLFTLLEG 80
Query: 216 PVASAFVEKFGC-RSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAV 274
+ + + + + LS ++ T + G GL V
Sbjct: 81 LTLGPILLVYTAGSIILQAFLGTAAIFGGLSLYALTTKRDLSFLGGFLFAGLI---GLIV 137
Query: 275 VSIAFWF 281
S+ F
Sbjct: 138 ASLVNIF 144
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 32.3 bits (74), Expect = 1.2
Identities = 54/273 (19%), Positives = 96/273 (35%), Gaps = 39/273 (14%)
Query: 140 EDEEEGNTREEEDSKIPDGGWGWMVVLAAFFINMAG-----DG--IAFSFGLLYIEFLNE 192
D + E + G W V L + + G D I + L EF
Sbjct: 2 SDANLADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFT 61
Query: 193 FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFV-------LS 245
S S ++ + L +++ L+ G + + F R + +I + FV L+
Sbjct: 62 SANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA 121
Query: 246 CFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIA-FWFEKKRGLACSLGSTGTGFGTTVYA 304
F+ ++E M + +L GIG+ ++ + ++ + RG SL FG V
Sbjct: 122 AFALSVE-MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180
Query: 305 PITS---YLISEYGWR--------GTVLLLSGTFFNLCVCGAIMRDPE--WWTLEQNKEK 351
S L + GWR LL G FF PE W + + + +
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL----------PESPRWLVGKGRVE 230
Query: 352 DLKSIKGASSCGSVSYRTESDMPDIEVLKEMLE 384
+ + S + D ++ +K +E
Sbjct: 231 EARKSLARLRGTSGEDKELLDELELIDIKRSIE 263
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 31.6 bits (72), Expect = 1.7
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 178 IAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGII 237
+ FGL ++ AS A+I F LLLG + +++G R +++ ++
Sbjct: 46 VQGEFGLTTVQ-----AASLISAAFISRWFGG--LLLGAMG----DRYGRRLAMVISIVL 94
Query: 238 SGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSY-VTAVVSIAFWFEKKRGLACSLGSTGT 296
VG + F+ +++ L+ G+G+A Y +A I W + R A +G
Sbjct: 95 FSVGTLACGFAPGYWTLFI-ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGF 153
Query: 297 GFGTTVYAPITSYLISEYGWR 317
G V A + S ++ +GWR
Sbjct: 154 SIGAVVAAQVYSLVVPVWGWR 174
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 31.5 bits (72), Expect = 1.9
Identities = 31/151 (20%), Positives = 45/151 (29%), Gaps = 20/151 (13%)
Query: 672 TWFVIPYFYLTDFVTNQGLSKEEATSILSYI----GVTNTVGMVALGWACDQPWLNVKKT 727
T F+ P Y T G+ +T+ Y G+ + LG D KK
Sbjct: 34 TTFIFP-LYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKF 91
Query: 728 YAACLIGCGVSTALMPLFATN---YWALLFTCLSFGIFFASNFSCTPIILVELVPLDR-- 782
+ +ST L+ LLF L+ F SN +L L D
Sbjct: 92 FGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSN-VFYDSMLPRLTTKDNMG 150
Query: 783 ------FATAY--GLTLLAQGIGNLVGPPLA 805
+A Y + LL +
Sbjct: 151 RISGLGWALGYLGSVILLIFVVLGFALGQQT 181
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 31.4 bits (72), Expect = 1.9
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIG--SLFMAVPLLL-GPVA 218
WM ++ A G G + F L +E + ++ A +G S+F+ + L + GP+A
Sbjct: 303 WMALIGAAL---TGFGFSLVFPALGVEAVKRVPPQ-NRGAALGAYSVFLDLSLGITGPLA 358
Query: 219 SAFVEKFGCRSMTIVAGIISGVGFVLS 245
FG S+ + A + + +G L+
Sbjct: 359 GLVASWFGYPSIFLAAALAALLGLALT 385
>gnl|CDD|224202 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 31.5 bits (72), Expect = 2.2
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 258 FGLLAGIGLAL----SYVTAVVSIAFWFEKKRGLACSLGST-GTGFGTTVYAPITSYLIS 312
G+LAGI S T V++I F L ++G G GTTV A I + +S
Sbjct: 49 LGVLAGIVATALLQSSTATTVLTIGFVAAGLLSLKQAIGVILGANIGTTVTAWIVALDLS 108
Query: 313 EYGWRGTVLLLSGTFF 328
LL G
Sbjct: 109 WLSPP---LLAIGAIL 121
>gnl|CDD|177445 PHA02662, PHA02662, ORF131 putative membrane protein; Provisional.
Length = 226
Score = 30.8 bits (69), Expect = 2.3
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 431 PFTTPENPKYPEPNRTA-AELEDSFTAPKLRQL 462
P T P P+ PEP A L D F A LR+L
Sbjct: 3 PRTPPTPPRPPEPTPAAPGSLYDVFLARFLRRL 35
>gnl|CDD|224213 COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy
production and conversion].
Length = 346
Score = 31.1 bits (71), Expect = 2.4
Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 34/217 (15%)
Query: 608 IWDYSFYLAGF-----WIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLL 662
WD++F++ F + G L+ +P N + + + ++ F L L
Sbjct: 120 FWDWAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFDQLLNPF----ALLCGLGL 175
Query: 663 VSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWL 722
V + + W ++ T L +E A + + VG + G P L
Sbjct: 176 VLMYVLHGAAWLLL--------KTEGAL-QERARKLARIAALLTLVGFLLFG-VWVTPGL 225
Query: 723 NVKKT----------YAACLIGCGVSTALMPL---FATNYWALLFTCLSF-GIFFASNFS 768
+ + L G A++ A + T L F S
Sbjct: 226 DGFAASRWFSLPWLFLFSLLPVVGALLAVLLKRKGRGKEGLAFVLTSLLFLLAILGLGIS 285
Query: 769 CTPIILVELVPLDRF-ATAYGLTLLAQGIGNLVGPPL 804
P +L V L + A + LTL + LV P+
Sbjct: 286 LFPYVLPSSVSLTIWDAASSPLTLSVMLVVALVFLPI 322
>gnl|CDD|201495 pfam00893, Multi_Drug_Res, Small Multidrug Resistance protein.
This family is the Small Multidrug Resistance (SMR)
family. Several members have been shown to export a
range of toxins, including ethidium bromide and
quaternary ammonium compounds, through coupling with
proton influx.
Length = 92
Score = 29.1 bits (66), Expect = 2.5
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 226 GCRSMTIVAGIISGVGFVLSCFSRTIEHMYL--TFGLLAGIGLALSYVTAVV 275
G + G I G G S+ ++ + L + + +GIG + + ++
Sbjct: 24 GFTKLWPSLGTIVGYGISFYLLSKALKSIPLGVAYAVWSGIGTVGTTLVGIL 75
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 31.1 bits (71), Expect = 2.9
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 16/110 (14%)
Query: 594 LRDSHSCWVFDVTQIWDY------SFYLAGFWII--ISGIL-------IAVIPFTENTSW 638
R Q + S ++ ++ + G+L I T + +
Sbjct: 199 YRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDINP 258
Query: 639 MDDARELIVGMFDFSMFLELHFLLV-SISTILLFTWFVIPYFYLTDFVTN 687
+D +L++G F+F+ L + V + +LL +F L + +
Sbjct: 259 LDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLF 308
>gnl|CDD|132661 TIGR03622, urea_t_UrtB_arc, urea ABC transporter, permease protein
UrtB. Members of this protein family are ABC
transporter permease subunits restricted to the Archaea.
Several lines of evidence suggest this protein is
functionally analogous, as well as homologous, to the
UrtB subunit of the Corynebacterium glutamicum urea
transporter. All members of the operon show sequence
similarity to urea transport subunits, the gene is
located near the urease structural subunits in two of
three species, and partial phylogenetic profiling
identifies this permease subunit as closely matching the
profile of urea utilization.
Length = 283
Score = 30.6 bits (69), Expect = 3.5
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 33/145 (22%)
Query: 170 FINMAGDGIAFSFGLLYI------EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE 223
FI +A G+A FG++ + EF+ + T L + V ++ G V
Sbjct: 13 FIVLAAVGLAVIFGMMGVINLAHGEFILVGAYGTTLTYHQAGLPLPVAMVSGVV------ 66
Query: 224 KFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEK 283
MT++ GII + + R ++ M TFGL L L+ +
Sbjct: 67 ------MTVIFGIIVERLIIQHLYDRLLDSMVATFGL----ALILTQGLRIT-------- 108
Query: 284 KRGLACSLGSTGTGFGTTVYAPITS 308
SL S T FG Y P T
Sbjct: 109 ---FGNSLDSISTPFGNVAYGPYTY 130
>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 284
Score = 30.3 bits (69), Expect = 3.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 657 ELHFLLVSIST--ILLFTWFVIPYFYLTDFVTN 687
+L FLLV + ++ WFV+PYF+ DF++
Sbjct: 64 DLSFLLVPGVSFVVMYLEWFVLPYFF--DFLSF 94
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 30.6 bits (70), Expect = 3.8
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 164 VVLAAFFINMAGDGIAFSFGLL--YIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASA 220
+ FF+ + + + +L + L ++FG S+ K W+ + + + +
Sbjct: 303 LFGILFFLLLLFAALTSAISMLEVLVAALIDKFGISRKKATWLIGILIFL------LGIP 356
Query: 221 FVEKFGCRSMTIVAGIISGVGFVLSCF 247
+ FG +V ++S + L
Sbjct: 357 SILSFGLSIFDLVDFVVSNILMPLGAL 383
>gnl|CDD|227417 COG5085, COG5085, Predicted membrane protein [Function unknown].
Length = 230
Score = 30.3 bits (68), Expect = 3.8
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 212 LLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR 249
+ G V AF+ KF RS + + + F
Sbjct: 176 EVFGDVIDAFIRKFSVRSS-----LFILIFVIGFLFFS 208
>gnl|CDD|218018 pfam04306, DUF456, Protein of unknown function (DUF456). This
family is a putative membrane protein that contains
glycine zipper motifs.
Length = 140
Score = 29.4 bits (67), Expect = 4.0
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 159 GWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAW------IGSLFMAVP- 211
GW ++ VLA + G + L FGASK +G
Sbjct: 29 GWVFLAVLALLTL--LGLVADYLAPAL---GAKRFGASKWGLWGAAVGGIVGLFVGPPFG 83
Query: 212 LLLGPVASAFV-EKFGCRSM--TIVAGIISGVGFVLS 245
LL+GP AF+ E + + + AG+ + VGF+
Sbjct: 84 LLIGPFLGAFLGELVRGKDLRRALRAGLGALVGFLAG 120
>gnl|CDD|225532 COG2985, COG2985, Predicted permease [General function prediction
only].
Length = 544
Score = 30.5 bits (69), Expect = 4.0
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 164 VVLAAFFINMAG-----DGIAFSFGLLY------IEFLNEFGASKSKTAWIGSLFMAVPL 212
V+ F+ G D + F GL+ +E F +S K+ + F + +
Sbjct: 40 VLFVGLFLGQYGFTINTDMLHFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIV 99
Query: 213 LLGPVASAFVEKFGCRSMTIVAGIISGV---GFVLSCFSRTIEHMYLTFGLLA--GIGLA 267
+ + + + K + ++AG+ SG L + + L G+G A
Sbjct: 100 IAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGAPSQALDQMGMGYA 159
Query: 268 LSYVTAVVSI 277
L+Y ++ I
Sbjct: 160 LAYPIGILGI 169
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 30.2 bits (68), Expect = 4.3
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 177 GIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAV-PLLLGPVASAFVEKFGCRSMTIVAG 235
+ + L + FL F A K +A + SL + + PL +A + + I+
Sbjct: 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGI 131
Query: 236 IISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275
+++ G +L + GLL + AL +
Sbjct: 132 LLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTA 171
>gnl|CDD|133464 cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze
the formation of a phosphodiester bond between a
membrane-associated undecaprenyl-phosphate (Und-P)
molecule and N-acetylhexosamine 1-phosphate, which is
usually donated by a soluble UDP-N-acetylhexosamine
precursor. The WbcO/WbpL substrate specificity has not
yet been determined, but the structure of their
biosynthetic end products implies that
UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or
UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The
subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P
transferases includes the WbcO protein from Yersinia
enterocolitica and the WbpL protein from Pseudomonas
aeruginosa. These transferases initiate LPS O-antigen
biosynthesis. Similar to other GlcNAc/MurNAc-1-P
transferase family members, WbpL is a highly hydrophobic
protein possessing 11 predicted transmembrane segments.
Length = 253
Score = 29.9 bits (68), Expect = 4.4
Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 43/163 (26%)
Query: 615 LAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWF 674
L+ ++I +L+A + ++DD R L + LLV + L +
Sbjct: 43 LSYLLLLIGLLLLAAV------GFIDDLRSLSPKI----------RLLVQLLAAALALYA 86
Query: 675 VIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTV-------GMVALGWACDQPWLNVKKT 727
+ P L L +L+ + + N G+
Sbjct: 87 LGPLTSLLLNFLPPWL--IALLLLLAIVWIINLYNFMDGIDGLAGG-------------E 131
Query: 728 YAACLIGCGV--STALMPLFATNYWALLFTCLSFGIFFASNFS 768
+ + A P A AL L F F N+
Sbjct: 132 ALVVFLALALLGYLAGEPALALLALALAGALLGFLPF---NWP 171
>gnl|CDD|236251 PRK08375, PRK08375, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 487
Score = 30.2 bits (69), Expect = 4.5
Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 205 SLFMAVPLLLGPVASAFVEKFGCR---SMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLL 261
L +AVPLL + ++ R ++ + A + +L Y+ G
Sbjct: 7 PLLVAVPLLAAALIVLLPKRRRLRWALALLVAALTFALAISLLPQVLDGGVIAYVVGGWP 66
Query: 262 AGIGL-----ALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316
GIG+ +LS + +V+ A L + G G +L+ G
Sbjct: 67 PGIGIELRADSLSALFLLVTSILAI------AALLYAIGYGEHRQTRFY-ALFLLLLAGL 119
Query: 317 RGTVLLLSGTFFNLCVCGAIM 337
G LL+ FNL V IM
Sbjct: 120 LG--ALLTADLFNLFVFLEIM 138
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 30.1 bits (68), Expect = 4.7
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 729 AACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYG 788
A C+IG M +++Y L L G + F I+L +++ + A
Sbjct: 76 ALCVIG-----NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVA 130
Query: 789 LTLLAQGIGNLVGPPL 804
+ + NL+G PL
Sbjct: 131 GMVSGMTVANLLGIPL 146
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 30.2 bits (68), Expect = 5.4
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 409 SVINIPTYIRNNEKQDVHKSSDPFTTPENPKY------PEPNRTAAELEDSFTAPKLRQL 462
V++ PT + + V ++ P P + P P+ + E AP L
Sbjct: 96 KVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPS 155
Query: 463 QK----TLSAEADRASEPRGKPLVK 483
QK TL + D+ S KP K
Sbjct: 156 QKDRLETLLSPKDKISLNSEKPKFK 180
>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related
zinc-dependent alcohol dehydrogenases.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. There are 7 vertebrate ADH 7
classes, 6 of which have been identified in humans.
Class III, glutathione-dependent formaldehyde
dehydrogenase, has been identified as the primordial
form and exists in diverse species, including plants,
micro-organisms, vertebrates, and invertebrates. Class
I, typified by liver dehydrogenase, is an evolving
form. Gene duplication and functional specialization of
ADH into ADH classes and subclasses created numerous
forms in vertebrates. For example, the A, B and C
(formerly alpha, beta, gamma) human class I subunits
have high overall structural similarity, but differ in
the substrate binding pocket and therefore in substrate
specificity. In human ADH catalysis, the zinc ion helps
coordinate the alcohol, followed by deprotonation of a
histidine (His-51), the ribose of NAD, a serine
(Ser-48), then the alcohol, which allows the transfer of
a hydride to NAD+, creating NADH and a zinc-bound
aldehyde or ketone. In yeast and some bacteria, the
active site zinc binds an aldehyde, polarizing it, and
leading to the reverse reaction. ADH is a member of the
medium chain alcohol dehydrogenase family (MDR), which
has a NAD(P)(H)-binding domain in a Rossmann fold of an
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a catalytic
zinc at the active site and a structural zinc in a lobe
of the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
Length = 365
Score = 29.7 bits (67), Expect = 7.0
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 25/73 (34%)
Query: 730 ACLIGCGVSTALMPLFATNYWALLF--------TCLSFG--------IFFASNFSCTPII 773
CLIGCG ST Y A + TC FG I + II
Sbjct: 161 VCLIGCGFSTG--------YGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRII 212
Query: 774 LVELVPLDRFATA 786
V++ D+F A
Sbjct: 213 AVDINK-DKFEKA 224
>gnl|CDD|151398 pfam10951, DUF2776, Protein of unknown function (DUF2776). This
bacterial family of proteins has no known function.
Length = 347
Score = 29.3 bits (66), Expect = 8.0
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 203 IGSLFMAVPLLLGPVA---SAFVEKFGCRSMTIVAG--IISGVGFVLSCFS------RTI 251
I LF A+PLL+ AFV ++G S VAG + S ++ F+ R I
Sbjct: 5 ISVLFRAIPLLMALFCFGYGAFVLEYGDDSGRFVAGPVVFSLGAICIALFTTAATIIRQI 64
Query: 252 EHMYLTFG--LLAGIGLALSYVTAVVSIAF 279
H Y F L IG + +T + +
Sbjct: 65 IHTYNRFAKFALPIIGYLAAAITMLGGLCL 94
>gnl|CDD|150609 pfam09955, DUF2189, Predicted integral membrane protein (DUF2189).
Members of this family are found in various hypothetical
prokaryotic proteins, as well as putative cytochrome c
oxidases. Their exact function has not, as yet, been
established.
Length = 127
Score = 27.9 bits (63), Expect = 8.9
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 593 HLRDSHSCWVFDVTQIWDYSFYLAG---FWIIISGILIAVIPFTENTSWMDDARELIVGM 649
LRDS W ++ Q+ LA FW+ ++ ++ A+ + + +
Sbjct: 34 SLRDSLGVWSRNLRQLLALGLVLALLFLFWLRVAALIFALFLGPAPIPNLSEFLAAVFTT 93
Query: 650 FDFSMFLELHFLLVSISTILLF--TWFVIP 677
FL + L+ ++ ++F + P
Sbjct: 94 PRGLGFLLVGTLVGAVFAAVVFALSVVSFP 123
>gnl|CDD|147573 pfam05461, ApoL, Apolipoprotein L. Apo L belongs to the high
density lipoprotein family that plays a central role in
cholesterol transport. The cholesterol content of
membranes is important in cellular processes such as
modulating gene transcription and signal transduction
both in the adult brain and during neurodevelopment.
There are six apo L genes located in close proximity to
each other on chromosome 22q12 in humans. 22q12 is a
confirmed high-susceptibility locus for schizophrenia
and close to the region associated with velocardiofacial
syndrome that includes symptoms of schizophrenia.
Length = 313
Score = 29.2 bits (66), Expect = 9.0
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 33/89 (37%)
Query: 222 VEKF--GCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAF 279
V+K GC +VA S VL+ +GLAL+ TA
Sbjct: 88 VDKVHRGCTISNVVASSTSAASGVLTI-----------------LGLALAPFTA------ 124
Query: 280 WFEKKRGLACSLGSTGTGFGTTVYAPITS 308
G + L +TG G G A +TS
Sbjct: 125 ------GGSLVLSATGLGLGAA--AAVTS 145
>gnl|CDD|236744 PRK10720, PRK10720, uracil transporter; Provisional.
Length = 428
Score = 29.2 bits (66), Expect = 9.3
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 22/74 (29%)
Query: 611 YSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILL 670
S GF II ILI V+ S+ +GM D + +E H
Sbjct: 171 GSVLFRGFLAIIP-ILIGVLV-GYALSFA-------MGMVDTTPIIEAH----------- 210
Query: 671 FTWFVIPYFYLTDF 684
WF +P FY F
Sbjct: 211 --WFALPTFYTPRF 222
>gnl|CDD|225170 COG2261, COG2261, Predicted membrane protein [Function unknown].
Length = 82
Score = 27.1 bits (61), Expect = 9.8
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 202 WIGSLFMAVPLLLGPVASAFVEK---FGCRSMTIVAGIISGV--GFVLSCFSRTIEHMYL 256
I + + L+ G +A + G M I+ GI+ G++L
Sbjct: 3 IIAWIIIG--LIAGWLAGKIMPGGGGGGI-FMNIILGIVGAFVGGWLLGAL-----GFGG 54
Query: 257 TFGLLAGIGLALSYVTAVVSIAFW 280
G +A +A+ + AV+ +A
Sbjct: 55 PGGNIASFIVAV--IGAVILLAIV 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,382,847
Number of extensions: 4159961
Number of successful extensions: 4866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4797
Number of HSP's successfully gapped: 213
Length of query: 805
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 700
Effective length of database: 6,280,432
Effective search space: 4396302400
Effective search space used: 4396302400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)