RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10046
(805 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 62.4 bits (152), Expect = 3e-10
Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 5/135 (3%)
Query: 189 FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS 248
+L E G S+ + S + + ++ R I++ + F
Sbjct: 53 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 112
Query: 249 RTIEHMYLTFGLL---AGIGLALSYVTAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYA 304
+L G + + ++ W+ +K+RG S+ + G +
Sbjct: 113 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 172
Query: 305 PITSYLISE-YGWRG 318
+ ++ W
Sbjct: 173 LLFLLGMAWFNDWHA 187
Score = 61.2 bits (149), Expect = 7e-10
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 668 ILLFTWFVIPYFYLT--------DFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
I L +F +YL ++ QG S+ + LS I + +G D+
Sbjct: 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR 88
Query: 720 PWLNVKKTYAACLIGCGVSTALM---PLFATNYWALLFTCLSFGIFFASNFSCTPIILVE 776
N + A LI M P ++ + G F + +V
Sbjct: 89 --SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146
Query: 777 LVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
+ A +G + P L
Sbjct: 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Score = 45.8 bits (109), Expect = 4e-05
Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 15/152 (9%)
Query: 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
+ V + + W YL + + ++++ G + GW D
Sbjct: 261 NVFVYLLRYGILDWSP---TYL---KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD- 313
Query: 720 PWL---NVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPI--IL 774
+ N T + ++T + + + C+ F I
Sbjct: 314 -KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI-YGPVMLIGLHA 371
Query: 775 VELVPLDRFATAYGLTLLAQGI-GNLVGPPLA 805
+EL P TA G T L + G++ +
Sbjct: 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403
Score = 42.7 bits (101), Expect = 4e-04
Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 37/220 (16%)
Query: 140 EDEEEGNTREEEDSKIPDGGWG--------WMVVLAAFFINMAGDGIAFSFGLLY---IE 188
+ ++ N + E++ W + +A F+ + +G+L
Sbjct: 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL------RYGILDWSPTY 278
Query: 189 FLNEFGASKSKTAWIGSLF---MAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLS 245
+ K++W L+ LL S V + R T V + +
Sbjct: 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIATIV 337
Query: 246 CFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFW------FEKKR-GLACSLGSTGTGF 298
+ + + + IG + + KK G A
Sbjct: 338 YWMNPAGNPTVDMICMIVIGFLI----YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393
Query: 299 GTTVYAPI-TSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
G +V A Y + +GW G +++ G + I+
Sbjct: 394 GGSVAASAIVGYTVDFFGWDGGFMVMIG----GSILAVIL 429
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 58.4 bits (141), Expect = 5e-09
Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 7/180 (3%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSL--FMAVPLLLGPVAS 219
W + L ++ D F + F ++ ++ + ++ A
Sbjct: 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF--FAP 280
Query: 220 AFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAF 279
+ + G ++ ++AG I V + S F+ + + + L + V I
Sbjct: 281 LIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK-TLHMFEVPFLLVGCFKYITS 339
Query: 280 WFEKK-RGLACSLGS-TGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
FE + + + + + G++G L+L +
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Score = 53.4 bits (128), Expect = 2e-07
Identities = 24/205 (11%), Positives = 61/205 (29%), Gaps = 18/205 (8%)
Query: 613 FYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLEL----HFLLVSISTI 668
+ +G +I++ +L +++ + +A F + LEL +S+ I
Sbjct: 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVI 230
Query: 669 LLFTWFVIP----YFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNV 724
+ + + + T F ++ +G ++ P +
Sbjct: 231 GVSCTYDVFDQQFANFFTSFFATGEQGTR-VFGYVTTMGELLNASIMFF-----APLIIN 284
Query: 725 KKTYAACLIGCGVSTAL---MPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD 781
+ L+ G ++ FAT+ ++ + +
Sbjct: 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344
Query: 782 RFATAYGL-TLLAQGIGNLVGPPLA 805
AT Y + + + + LA
Sbjct: 345 FSATIYLVCFCFFKQLAMIFMSVLA 369
Score = 39.1 bits (91), Expect = 0.005
Identities = 27/193 (13%), Positives = 46/193 (23%), Gaps = 8/193 (4%)
Query: 169 FFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCR 228
FF G F F ++ + SKS T I + LL P+ +K G R
Sbjct: 16 FFFYFFIMGAYFPFFPIW--LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73
Query: 229 -SMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV-----SIAFWFE 282
+ + + + F Y G+ L + +
Sbjct: 74 KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133
Query: 283 KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDPEW 342
++ G + A I + + L + D
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193
Query: 343 WTLEQNKEKDLKS 355
N S
Sbjct: 194 SATVANAVGANHS 206
Score = 33.0 bits (75), Expect = 0.36
Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 11/142 (7%)
Query: 671 FTW-FVIPYF--YLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKT 727
F P+F +L D +SK + I + I + + + G D+ K
Sbjct: 21 FIMGAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYL 76
Query: 728 YAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPII-LVELVPLD---RF 783
+ S F VE R
Sbjct: 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRS 136
Query: 784 ATAYGLTLLAQGIGNLVGPPLA 805
+G + +G +G +
Sbjct: 137 NFEFGRARMFGCVGWALGASIV 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 2e-05
Identities = 57/474 (12%), Positives = 120/474 (25%), Gaps = 199/474 (41%)
Query: 349 KEKDLKSIKGASSCGSVSYR---TESDMPDIEVLKEMLESGVTPD--FIETSVATELNAE 403
++++ I + S + R T + E++++ +E + + F+ + + TE
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 404 TCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQ 463
+ + YI ++ ++ + F KY N + + L +L+
Sbjct: 106 S------MMTRMYIEQRDR--LYNDNQVF-----AKY---NVSRLQPYLKLRQ-ALLELR 148
Query: 464 --------------KT-LSAEADRASEPRGKPLVKNHSVESDGPHEPL-VSAGKGNDSNR 507
KT ++ + ++ V+ + ++ N
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDV-----------CLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 508 CKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDF 567
+ L Q + T + K H ++ +
Sbjct: 198 V--LEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQA-----------------ELRRL 237
Query: 568 LHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILI 627
L SK LL +L +V +
Sbjct: 238 LKSKPYEN-----CLL-----VLL------------NV---QN----------------- 255
Query: 628 AVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN 687
+ F+ S ILL T F +TDF++
Sbjct: 256 ---------AK-------AWNAFNLS------------CKILLTTRFK----QVTDFLSA 283
Query: 688 Q------------GLSKEEATSILS-YIGVTNT-------------VGMVALG------- 714
L+ +E S+L Y+ + ++A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 715 WACDQPWLNV-----KKTYAACLIGCGVSTALMP-LFATNYWALLFTCLSFGIF 762
W W +V + L L P + + L +F
Sbjct: 344 W---DNWKHVNCDKLTTIIESSL------NVLEPAEYRKMFDRL-------SVF 381
Score = 42.5 bits (99), Expect = 5e-04
Identities = 60/395 (15%), Positives = 108/395 (27%), Gaps = 124/395 (31%)
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT---IEHMYLTFGLLAGIGLALSYVTA 273
+AF C+ ++ V LS + T ++H +T L L Y+
Sbjct: 258 AWNAF--NLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD- 312
Query: 274 VVSIAFWFEKKRGL---ACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330
+ + L + P LS
Sbjct: 313 --------CRPQDLPREVLTT------------NP---------------RRLS------ 331
Query: 331 CVCGAIMRD-PEWWT--LEQNKEKDLKSIKGASSCGSVSYRTESDM----------PD-- 375
+ +RD W N +K I+ S++ ++ P
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 376 ---IEVLKEMLESGVTPDFIETSVATELNAETC----KFSSVINIPT-YIR----NNEKQ 423
+L ++ V + V +L+ + S I+IP+ Y+ +
Sbjct: 386 HIPTILL-SLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 424 DVHKS------------SDPFTTPENPKY-----------PEPNRTAAE-----LEDSFT 455
+H+S SD P +Y E L+ F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 456 APKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPG 515
K+R +A + + K + ++D +E LV+A
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF------LPKIEE 557
Query: 516 NLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHR 550
NL S T LR +++ H +V R
Sbjct: 558 NL---ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 41.0 bits (95), Expect = 0.002
Identities = 42/393 (10%), Positives = 94/393 (23%), Gaps = 157/393 (39%)
Query: 336 IMRDPEWWTLEQNKEKDLKSIK-----GASSCG-SV-------SYRTESDMPD------- 375
+ R + L + +L+ K G G + SY+ + M
Sbjct: 131 VSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 376 -----IEVLKEMLES---GVTPDF---IETSVATELNAETCKFSSVINIPTYIRNNEKQD 424
E + EML+ + P++ + S +L + + +R K
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--------AELRRLLKSK 241
Query: 425 VHKSS-------------DPF--------TT----------PENPKYPEPNRTAAELEDS 453
+++ + F TT + + +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD----HHSMT 297
Query: 454 FTAPKLRQLQKTLSAEADRASEPRGKPLVK--NHSVESDGPHE-----PLVSAGKGNDSN 506
T +++ L L+K + + D P E P
Sbjct: 298 LTPDEVKSL------------------LLKYLDCRPQ-DLPREVLTTNPRR--------- 329
Query: 507 RCKSMSPPGNLGRQHRSDSTPWLRRQF---------SFKEQPTHYLKHL----------- 546
+S R + W S + +
Sbjct: 330 ----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 547 ----KVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPG--------------- 587
+ +W ++ + + LH V + + +P
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 588 --RILDH-HLRDSHSCWVFDVTQIWDYSF-YLA 616
I+DH ++ + + Y + ++
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 31.0 bits (69), Expect = 2.1
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 28/162 (17%)
Query: 11 LPSNSDIIADGSANRKKLYRSSLTLATLNEADDFDEVR-----------GDIDGPKRILA 59
L +++ DG K + + L + + + P+ +L
Sbjct: 147 LRPAKNVLIDGVLGSGK---TWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 60 VLVPLTAYIN---NRTPSHVYTPPEGTISNGVSITTL-------EDLGSMTSVQSLKAIE 109
+L L I+ H S + L L + +VQ+ KA
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 110 N-NPVTRSLDTVQKSSDTEYEGVKFSGVPDSEDEEEGNTREE 150
N + L T + T++ + + T +E
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Score = 31.0 bits (69), Expect = 2.3
Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 85/234 (36%)
Query: 10 TLPSNSDIIADGSAN--RKKLYRSSLTLATLNEADDFDEVRGDIDGPKRILA-------V 60
+ I + K Y + L V+ + + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL--------LVLLNVQ---N--AKAWNAFNLSCKI 268
Query: 61 LV-----PLTAYINNRTPSHV--------YTPPEGTISNGVSITTLEDLGSM--TSVQSL 105
L+ +T +++ T +H+ TP E L Q L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE----------VKSLLLKYLDCRPQDL 318
Query: 106 K--AIENNPVTRSL---------DTVQKSSDTEYEGVKFSGVPDS--EDEEEGNTRE--- 149
+ NP S+ T + K + + +S E R+
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLNVLEPAEYRKMFD 376
Query: 150 -----EEDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKS 198
+ IP ++L+ + ++ + + +N+ S
Sbjct: 377 RLSVFPPSAHIP------TILLSLIWFDVIKSDV--------MVVVNKL-HKYS 415
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 42.2 bits (99), Expect = 5e-04
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 22/160 (13%)
Query: 163 MVVLAAFFINMAGDGIAFSFGLLYI---EFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS 219
++ + FF+ A + L I +F F + + I S F ++ A
Sbjct: 29 ALLCSLFFL------WAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAG 82
Query: 220 AFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH--MYLTFGLLAGIGLAL------SYV 271
++K ++ I + +G L + I + ++L + GL +V
Sbjct: 83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFV 142
Query: 272 TAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLI 311
T + E +L T FG + LI
Sbjct: 143 TVLGP-----ESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 7e-04
Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 69/269 (25%)
Query: 590 LDHHLRDSHSCWVFDVTQIWDYSFY------LAGFWI---IISGI-LIA-----VIPFTE 634
L+H L + + F +Q+ + F GF + L+ V E
Sbjct: 16 LEHVLLVPTASF-FIASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 635 --NTSWMDDARELIVGMFDFSMFL---ELHFLLVSI----STILLFTWFVIPYFYLTDFV 685
D L + F+ + +L ++H L + T L+ T +I + +
Sbjct: 74 PSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 686 TNQGLSKEEATSILSYIGVTNTVGMVAL--GWACDQPWL----NVKKTYAACLIGCGVST 739
+ K ++ S L +VA+ G + ++ +TY L+G +
Sbjct: 133 AKRPFDK-KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV-LVGDLIKF 190
Query: 740 A---LMPLFATNY-WALLFTCLSFGI--------------FFASN-FSCTPII-LVELV- 778
+ L L T +FT I + S SC P+I +++L
Sbjct: 191 SAETLSELIRTTLDAEKVFT-QGLNILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAH 248
Query: 779 -----------PLDRFATAYGLTLLAQGI 796
P + + G T +QG+
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Score = 39.3 bits (91), Expect = 0.005
Identities = 52/344 (15%), Positives = 95/344 (27%), Gaps = 97/344 (28%)
Query: 407 FSSVINIPT--YIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSF---TAPKLRQ 461
V+ +PT + ++ Q+ P T EP T AEL F + +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-TPAELVGKFLGYVSSLVEP 74
Query: 462 LQKTLSAEADRAS----EP---RGKPLVKNHSVESDGPHEPLVSAGKGND---------- 504
+ + E G + H++ + E + K +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 505 -SNRCKSMSPPGNLGRQHRSDSTPWLRRQFS-FKEQ--PTHYLKHLKVHRYLWVQILVNG 560
+ R L R + + + F Q Y + L R L+
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEEL---RDLY------- 177
Query: 561 GHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSC-----WVFDVTQIW------ 609
+ + L+ L +R + ++ + W
Sbjct: 178 -QTYHVLVGD-----------LIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSN 224
Query: 610 --DYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSIST 667
D YL I IS LI VI ++ A+ L G + L
Sbjct: 225 TPDKD-YLLS--IPISCPLIGVIQLA---HYVVTAKLL--GFTPGELRSYLKGATGHSQG 276
Query: 668 IL--LF-----TWFVIPYFYLTDFVTNQGLSKEEATSILSYIGV 704
++ + +W F + +A ++L +IGV
Sbjct: 277 LVTAVAIAETDSW--------ESFFVSV----RKAITVLFFIGV 308
Score = 37.0 bits (85), Expect = 0.032
Identities = 48/260 (18%), Positives = 76/260 (29%), Gaps = 98/260 (37%)
Query: 8 NGTLPSNSDI-IA--DGSANR------KKLYRSSLTLATLNEADDFDEVRGDIDGPKRIL 58
N LP+ + I+ +G+ N + LY +LTL D+ R I +R L
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSERKL 414
Query: 59 AVLV---PLTAYINNRTP--SHVYTPPEGTISNGVSITTLEDLGSMT---SVQSLKAIEN 110
P+ + P SH+ P I +DL + + ++
Sbjct: 415 KFSNRFLPVAS------PFHSHLLVPASDLI--------NKDLVKNNVSFNAKDIQI--- 457
Query: 111 NPVTRSLDTVQKSSDTEYEGVKFSGVPDSEDEEEGNTREEEDSKIP---DGGWGWMVVLA 167
PV Y D+ D + R S D ++ L
Sbjct: 458 -PV--------------Y---------DTFDGS--DLRVLSGSISERIVD----CIIRLP 487
Query: 168 AFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGC 227
+ F +I L +FG + LG + + G
Sbjct: 488 VKWET------TTQFKATHI--L-DFGPGGASG-------------LGVLTHRNKDGTGV 525
Query: 228 RSMTIVAGIISG-----VGF 242
R IVAG + GF
Sbjct: 526 R--VIVAGTLDINPDDDYGF 543
Score = 35.0 bits (80), Expect = 0.12
Identities = 71/424 (16%), Positives = 113/424 (26%), Gaps = 130/424 (30%)
Query: 7 SNGTLPSNSDII-----ADGSANR--KKLYRSSL---------TLATL-----NEADDFD 45
++ TL ++I A A R K S+L L + N D F+
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 46 EVRG--DIDGP------KRILAVLVPLTAYINNRTPSHVYTPPEGTISNGVSITT-LEDL 96
E+R K L L V+T G++I LE+
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIR--TTLDAEKVFT-------QGLNILEWLENP 222
Query: 97 GSMTSVQSLKAIENNPVTRSLDTVQKSSDTEYEGV-KFSGVPDSE--DEEEGNTREEEDS 153
+ L +I P+ S + Y K G E +G T +
Sbjct: 223 SNTPDKDYLLSI---PI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG- 276
Query: 154 KIPDGGWGWMVVLAAFFINMAGDGIAF-SFGLLYIEFLNEFGASKSKTAWIGSLF-MAVP 211
++ A I +F I L F +IG A P
Sbjct: 277 -----------LVTAVAIAETDSWESFFVSVRKAITVL--F--------FIGVRCYEAYP 315
Query: 212 LLLGP---VASAFVEKFGCRS-MTIVAGIISGVGFVLSCFSRTIEHM--YLTFGLLAGIG 265
P + + G S M ++ + + +L G I
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNL------TQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 266 LALSYVTAVVS--------IAFWFEKKRGLACS-LGSTGTGF------GTTVYAPIT--- 307
L VVS + K + A S L + F + + P+
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 308 --SYL------ISEYGWRGTVLLLSG--------TF--FNLC---------VCGAIMRDP 340
L I++ + V + TF +L + I+R P
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 341 EWWT 344
W
Sbjct: 488 VKWE 491
Score = 32.3 bits (73), Expect = 0.73
Identities = 51/333 (15%), Positives = 87/333 (26%), Gaps = 141/333 (42%)
Query: 179 AFSFGLLYIEFLN------EFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTI 232
+ F +L I N FG K K I + A+ EK
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKR--IRENYSAMIFETIVDGKLKTEK-------- 1705
Query: 233 VAGIISGVGFVLS--CFSRTIEHMYLTFGLLAGIGLALSYVT----AVVSIAFWFE-KKR 285
I + + F + T T ++ A + + K +
Sbjct: 1706 ---IFKEINEHSTSYTFRSEKGLLSAT------------QFTQPALTLMEKAAFEDLKSK 1750
Query: 286 GL----AC----SLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA-I 336
GL A SLG EY L A +
Sbjct: 1751 GLIPADATFAGHSLG--------------------EY----AAL----------ASLADV 1776
Query: 337 MRDPEWWTLEQNKEKDLKSIKGASSCGSVSYR---TESDMPDIEVLKE---MLESGVTPD 390
M ++E L + V YR + +P E+ + M+ + P
Sbjct: 1777 M------SIE-----SLVEV--------VFYRGMTMQVAVPRDELGRSNYGMI--AINPG 1815
Query: 391 FIETS--------VATELNAETCKFSSVIN--IP--TYIRNNEKQDVHKSSDPFTTPENP 438
+ S V + T ++N + Y+ + + +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD------------ 1863
Query: 439 KYPEPNRTAAELEDSFTAPK--LRQLQKTLSAE 469
T + + K + +LQK+LS E
Sbjct: 1864 -------TVTNVLNFIKLQKIDIIELQKSLSLE 1889
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.20
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 23/49 (46%)
Query: 421 EKQDVHK--SSDPFTTPENPK-YPEPNRTAAELEDSFTAPKLRQLQKTL 466
EKQ + K +S K Y DS AP L ++ T+
Sbjct: 18 EKQALKKLQAS--------LKLY-AD--------DS--APAL-AIKATM 46
Score = 31.1 bits (69), Expect = 0.65
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 458 KLRQLQKTLSAEADRASEPRGKP-LVKNHSVE 488
L++LQ +L A P L ++E
Sbjct: 21 ALKKLQASLKLYA-----DDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 3.0
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 20/37 (54%)
Query: 103 QSLKAIENNPVTRSLDTVQKSSDTEYEGVKFSGVPDS 139
Q+LK ++ SL Y DS
Sbjct: 20 QALKKLQA-----SLKL--------YA-------DDS 36
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 32.3 bits (74), Expect = 0.69
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 24/125 (19%)
Query: 162 WMVVLAAFFINMAGDGIAF-SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASA 220
++ AF + +F +++I F G + + + ++PL++ + S
Sbjct: 416 VAGLVGAFMT-------SLYTFRMIFIVF---HGKEQIHAHAVKGVTHSLPLIVLLILST 465
Query: 221 FVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFW 280
FV V + +T E + + L ++ V +++ W
Sbjct: 466 FVGAL-------------IVPPLQGVLPQTTELAHGSMLTLEITSGVVAVVGILLAAWLW 512
Query: 281 FEKKR 285
K+
Sbjct: 513 LGKRT 517
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 29.5 bits (66), Expect = 6.6
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 283 KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325
KKRGL G F + LI Y G+VL+ G
Sbjct: 994 KKRGLCIIPTKFGISFTVPFLNQAGA-LIHVYT-DGSVLVSHG 1034
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 28.8 bits (65), Expect = 8.4
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 28/92 (30%)
Query: 91 TTLED-LGSMTSVQ---------SLKAIENNP--------------VTRSLDTVQKSSDT 126
T+L D + M Q SLKA+E +P +T +D +
Sbjct: 183 TSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLK 242
Query: 127 EYEGVKF----SGVPDSEDEEEGNTREEEDSK 154
E+EG E +EE RE+E +
Sbjct: 243 EFEGKTLVDITKDFELEETDEEKAEREKEIKE 274
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.1 bits (65), Expect = 8.4
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 6/86 (6%)
Query: 389 PDFIETSVATELNAETCKFSSVINIPTYIRNNEKQ--DVHKSSDPFTTPENPKYPEPNRT 446
+ T+ L + S + +I+ N P PE
Sbjct: 2524 DSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQV----GEPIIPESWIV 2579
Query: 447 AAELEDSFTAPKLRQLQKTLSAEADR 472
A + + + +K L +A
Sbjct: 2580 AQAQLSNQQSTIVSNFRKILLMKAFH 2605
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 28.7 bits (65), Expect = 8.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 730 ACLIGCGVST 739
CLIGCG ST
Sbjct: 169 VCLIGCGFST 178
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 28.7 bits (65), Expect = 9.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 730 ACLIGCGVST 739
CL+GCG+ST
Sbjct: 168 VCLLGCGIST 177
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 28.3 bits (64), Expect = 9.3
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 28/92 (30%)
Query: 91 TTLED-LGSMTSVQ---------SLKAIENNP--------------VTRSLDTVQKSSDT 126
T+L D + M Q SLKA+E +P +T +D +
Sbjct: 183 TSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLK 242
Query: 127 EYEGVKF----SGVPDSEDEEEGNTREEEDSK 154
E+EG E +EE RE+E +
Sbjct: 243 EFEGKTLVDITKDFELEETDEEKAEREKEIKE 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,337,780
Number of extensions: 754206
Number of successful extensions: 1488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1481
Number of HSP's successfully gapped: 47
Length of query: 805
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 704
Effective length of database: 3,881,772
Effective search space: 2732767488
Effective search space used: 2732767488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)