RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10046
(805 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 65.1 bits (157), Expect = 2e-11
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 5/188 (2%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS 219
W + L FF A + +F L + +L E G S+ + S +
Sbjct: 22 LRWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMG 80
Query: 220 AFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH---MYLTFGLLAGIGLALSYVTAVVS 276
+ ++ R I++ + F + L G + + +
Sbjct: 81 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 140
Query: 277 IAFWFEK-KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
+ W+ + +RG S+ + G + + ++ + L + L A
Sbjct: 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200
Query: 336 IMRDPEWW 343
+
Sbjct: 201 FAMMRDTP 208
Score = 43.5 bits (101), Expect = 9e-05
Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 6/198 (3%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS 219
++ A + K++W L+ + +
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 306
Query: 220 AFVEKFG--CRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSI 277
+K R T V + + + + + + IG + ++ +
Sbjct: 307 WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL 366
Query: 278 A---FWFEKKRGLACSLGSTGTGFGTTVYAP-ITSYLISEYGWRGTVLLLSGTFFNLCVC 333
+K G A G +V A I Y + +GW G +++ G +
Sbjct: 367 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 426
Query: 334 GAIMRDPEWWTLEQNKEK 351
++ E EQ ++
Sbjct: 427 LIVVMIGEKRRHEQLLQE 444
Score = 43.1 bits (100), Expect = 9e-05
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 11/146 (7%)
Query: 668 ILLFTWFVIPYF------YLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPW 721
+ +F + Y ++ QG S+ + LS I + +G D
Sbjct: 28 LGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD--R 85
Query: 722 LNVKKTYAACLIGCGVSTA---LMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELV 778
N + A LI +P ++ + G F + +V
Sbjct: 86 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 145
Query: 779 PLDRFATAYGLTLLAQGIGNLVGPPL 804
+ A +G + P L
Sbjct: 146 SQKERGGIVSVWNCAHNVGGGIPPLL 171
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 63.6 bits (153), Expect = 4e-11
Identities = 28/198 (14%), Positives = 48/198 (24%), Gaps = 8/198 (4%)
Query: 164 VVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE 223
+ FF G F F +++ + SKS T I + LL P+ +
Sbjct: 11 MFGLFFFFYFFIMGAYFPFFPIWLH--DINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68
Query: 224 KFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALS------YVTAVVSI 277
K G R + V F + + + +G AV +
Sbjct: 69 KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128
Query: 278 AFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
++ G + A I + + L +
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188
Query: 338 RDPEWWTLEQNKEKDLKS 355
D N S
Sbjct: 189 TDAPSSATVANAVGANHS 206
Score = 48.2 bits (113), Expect = 3e-06
Identities = 17/212 (8%), Positives = 48/212 (22%), Gaps = 3/212 (1%)
Query: 597 SHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFL 656
+ + ++ A ++ P + + A +
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217
Query: 657 ELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWA 716
L ++ + + + E + + T + A
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF 277
Query: 717 CDQPWLNVKKTYAACLIGCGVSTALMPLF--ATNYWALLFTCLSFGIFFASNFSCTPIIL 774
+N A L+ + + + AT+ ++ +
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 775 VELVPLDRFATAYGLTL-LAQGIGNLVGPPLA 805
+ AT Y + + + + LA
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
Score = 37.1 bits (84), Expect = 0.008
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 7/151 (4%)
Query: 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
++ F F+ +SK + I + I + + + G D+
Sbjct: 10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK 69
Query: 720 PWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVP 779
L ++K + G V A +F + + C +
Sbjct: 70 --LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA 127
Query: 780 L-----DRFATAYGLTLLAQGIGNLVGPPLA 805
R +G + +G +G +
Sbjct: 128 FIEKVSRRSNFEFGRARMFGCVGWALGASIV 158
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 28.7 bits (64), Expect = 1.6
Identities = 16/146 (10%), Positives = 38/146 (26%), Gaps = 46/146 (31%)
Query: 3 TKIVSNG----TLPSNSDIIADGSANRKKLYRSSLTLATLNEADDFDEVRGDIDGPKRIL 58
K++ NG + +K + + L D+ + + D+
Sbjct: 38 IKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADV------- 90
Query: 59 AVLVPLTAYINNRTPSHVYTPPEGTISNGVSITTLEDLGSMTSVQSLKAIENNPVTRSLD 118
Y E +SLKA P ++
Sbjct: 91 ---------------ILKYNADE--------------------ARSLKAYGELPEHAKIN 115
Query: 119 TVQKSSDTEYEGVKFSGVPDSEDEEE 144
+ + ++F + D +++ +
Sbjct: 116 ETDTFGPGDDDEIQFDDIGDDDEDID 141
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 29.3 bits (65), Expect = 1.7
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 4/113 (3%)
Query: 626 LIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFV 685
++ ++P +N + D R++I + D F E+ I + +
Sbjct: 19 ILDILP--DNPNKGYDVRDVIKRVVDHGEFFEVQPYFAKNIVIGFARIQGKTVGIVANQP 76
Query: 686 TNQG--LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCG 736
+ L + + +I + + L + +L +I G
Sbjct: 77 SVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHG 129
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 264
Score = 28.9 bits (64), Expect = 1.9
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 626 LIAVIPFTENTSWMDDARELIVGMFDFSMFLELH 659
L ++P + D R++I + D+ +LE+
Sbjct: 19 LRDIVPIDGKKGY--DVRDVIAKIVDWGDYLEVK 50
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 29.0 bits (64), Expect = 2.1
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 626 LIAVIPFTENTSWMDDARELIVGMFDFSMFLELH 659
L +++P + ++ D +I +FD S E
Sbjct: 21 LYSMVPLNDKRAY--DIYNVIARLFDNSELHEYK 52
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 27.8 bits (61), Expect = 4.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 626 LIAVIPFTENTSWMDDARELIVGMFDFSMFLELH 659
L ++P + N + D +I + D + F E
Sbjct: 17 LDTIVPDSANQPY--DMHSVIEHVLDDAEFFETQ 48
>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana
perezi) [TaxId: 8403]}
Length = 174
Score = 27.1 bits (59), Expect = 6.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 730 ACLIGCGVSTALMPLF 745
+CLIGCG +T
Sbjct: 5 SCLIGCGFATGYGAAV 20
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus
callarias) [TaxId: 8053]}
Length = 175
Score = 26.9 bits (58), Expect = 7.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 729 AACLIGCGVSTALMPLF 745
CL+GCGVST
Sbjct: 5 TVCLLGCGVSTGFGAAV 21
>d1dmla1 d.131.1.2 (A:29-169) UL42 {Human herpesvirus type 1 [TaxId:
10298]}
Length = 141
Score = 26.3 bits (58), Expect = 9.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 295 GTGFGTTVYAPITSYLISEYGWRG 318
T FG V+ P+ S Y WRG
Sbjct: 42 NTIFGEQVFLPLEHSQFSRYRWRG 65
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus
musculus), class II [TaxId: 10090]}
Length = 174
Score = 26.4 bits (57), Expect = 9.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 730 ACLIGCGVSTA 740
CLIGCG S+
Sbjct: 6 VCLIGCGFSSG 16
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 26.7 bits (58), Expect = 9.5
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 730 ACLIGCGVSTALMPLF 745
CLIGCG ST
Sbjct: 7 VCLIGCGFSTGYGAAV 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,000,591
Number of extensions: 139549
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 23
Length of query: 805
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 712
Effective length of database: 1,130,706
Effective search space: 805062672
Effective search space used: 805062672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)