BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10049
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
++W E RD+WW+D +E AS PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
++W E RD+WW+D +E AS PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
++W E RD+WW+D +E AS PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
++W E RD+WW+D +E AS PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
++W E RD+WW+D +E AS PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
++W E RD+WW+D +E AS PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
++W E RD+WW+D +E AS PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 38 NKAAVNWTENRDVWWQDEMEDAST--SCYPEWMDAEDPLFMLYT 79
N +V + RD+ W E + T C P +D+EDPLF+LYT
Sbjct: 229 NNPSVAFHAPRDLDWATEKKKYKTYYPCTP--VDSEDPLFLLYT 270
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 8/37 (21%)
Query: 7 HSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVN 43
+++ LG KVD CIV+K++ + GD+K A++
Sbjct: 388 YNDKLGKKVDHCIVIKYMKPV--------GDSKVAMD 416
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 7 HSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVN 43
+++ LG KVD CIV+K Y + GD+K A +
Sbjct: 388 YNDKLGKKVDHCIVIK--------YXKPVGDSKVAXD 416
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,614,250
Number of Sequences: 62578
Number of extensions: 89537
Number of successful extensions: 218
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)