Query psy10049
Match_columns 80
No_of_seqs 106 out of 1019
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:33:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ry2_A Acetyl-coenzyme A synth 97.9 2.4E-05 8.1E-10 58.0 6.2 65 3-80 207-271 (663)
2 1pg4_A Acetyl-COA synthetase; 97.6 0.00015 5.1E-09 53.5 7.1 64 3-80 200-265 (652)
3 3c5e_A Acyl-coenzyme A synthet 92.5 0.47 1.6E-05 34.3 7.0 31 50-80 185-215 (570)
4 3etc_A AMP-binding protein; ad 88.4 1 3.4E-05 32.6 5.6 32 49-80 199-234 (580)
5 3r44_A Fatty acyl COA syntheta 87.5 0.54 1.8E-05 33.4 3.6 29 52-80 151-179 (517)
6 2v7b_A Benzoate-coenzyme A lig 86.2 0.62 2.1E-05 33.0 3.4 30 51-80 163-192 (529)
7 3ni2_A 4-coumarate:COA ligase; 83.9 0.43 1.5E-05 34.0 1.6 31 50-80 157-187 (536)
8 3g7s_A Long-chain-fatty-acid-- 81.8 0.94 3.2E-05 32.3 2.8 31 50-80 158-189 (549)
9 3rg2_A Enterobactin synthase c 80.9 1.4 4.7E-05 32.0 3.3 29 52-80 165-193 (617)
10 4gs5_A Acyl-COA synthetase (AM 79.6 0.61 2.1E-05 31.8 1.1 11 70-80 36-46 (358)
11 4fuq_A Malonyl COA synthetase; 78.4 1.9 6.5E-05 30.4 3.4 18 63-80 147-164 (503)
12 3rix_A Luciferase, luciferin 4 77.4 5.8 0.0002 28.2 5.7 11 70-80 189-199 (550)
13 3o83_A Peptide arylation enzym 74.0 11 0.00038 26.7 6.5 15 66-80 186-200 (544)
14 3ite_A SIDN siderophore synthe 72.7 3.5 0.00012 29.3 3.6 29 52-80 156-184 (562)
15 2d1s_A Luciferase, luciferin 4 72.5 3.1 0.0001 29.7 3.2 30 51-80 165-201 (548)
16 3e7w_A D-alanine--poly(phospho 70.9 3.1 0.00011 29.2 2.9 31 50-80 121-152 (511)
17 3kxw_A Saframycin MX1 syntheta 70.2 1.4 4.7E-05 31.5 0.9 16 65-80 161-176 (590)
18 1t5h_X 4-chlorobenzoyl COA lig 69.6 1.9 6.6E-05 30.3 1.6 14 67-80 149-162 (504)
19 3l8c_A D-alanine--poly(phospho 69.4 4.2 0.00014 28.6 3.3 16 65-80 139-154 (521)
20 3ivr_A Putative long-chain-fat 69.2 1.3 4.4E-05 31.2 0.6 16 65-80 154-169 (509)
21 1mdb_A 2,3-dihydroxybenzoate-A 68.0 1.7 6E-05 30.9 1.1 14 67-80 178-191 (539)
22 1v25_A Long-chain-fatty-acid-C 65.5 3.5 0.00012 29.3 2.3 28 50-80 158-185 (541)
23 3nyq_A Malonyl-COA ligase; A/B 65.4 4.1 0.00014 28.7 2.6 15 66-80 150-164 (505)
24 3t5a_A Long-chain-fatty-acid-- 64.5 3 0.0001 28.8 1.7 16 65-80 177-192 (480)
25 3ipl_A 2-succinylbenzoate--COA 63.0 3.6 0.00012 28.7 1.9 14 67-80 159-172 (501)
26 3tsy_A Fusion protein 4-coumar 60.9 1.7 5.8E-05 33.3 -0.1 16 65-80 219-234 (979)
27 4dg8_A PA1221; ANL superfamily 59.8 5.1 0.00017 29.3 2.3 14 67-80 160-173 (620)
28 3fce_A D-alanine--poly(phospho 59.4 4 0.00014 28.7 1.6 15 66-80 139-153 (512)
29 3gqw_A Fatty acid AMP ligase; 59.3 5.2 0.00018 28.3 2.2 14 67-80 172-185 (576)
30 4gr5_A Non-ribosomal peptide s 54.8 6.7 0.00023 28.0 2.2 15 66-80 209-223 (570)
31 1amu_A GRSA, gramicidin synthe 51.3 7.6 0.00026 27.8 2.0 14 67-80 178-191 (563)
32 2vsq_A Surfactin synthetase su 46.7 9.4 0.00032 30.3 2.0 15 66-80 602-616 (1304)
33 2y27_A Phenylacetate-coenzyme 38.3 16 0.00054 25.0 1.9 29 50-80 71-99 (437)
34 3hgu_A EHPF; phenazine, antibi 37.7 12 0.00041 25.0 1.2 13 68-80 88-100 (369)
35 2y4o_A Phenylacetate-coenzyme 37.6 16 0.00056 24.9 1.9 29 50-80 73-101 (443)
36 3qov_A Phenylacetate-coenzyme 26.5 13 0.00044 25.4 -0.1 14 67-80 81-95 (436)
No 1
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=97.89 E-value=2.4e-05 Score=58.04 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 3 DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 3 ~~l~~a~~~~~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
..+++++...+.++++|++++.+. ....+..+++++|++++......+++..++++||+||+|||
T Consensus 207 ~~~~~~~~~~~~~~~vi~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTS 271 (663)
T 1ry2_A 207 RIVDDALRETPGVRHVLVYRKTNN-------------PSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTS 271 (663)
T ss_dssp HHHHHHTTSCTTCCEEEEECSSCC-------------SSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEEC
T ss_pred HHHHHHHHhCCCCceEEEEecCCC-------------CccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEecc
Confidence 446666655566788888876431 01223334567899888755444566678899999999998
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=97.64 E-value=0.00015 Score=53.52 Aligned_cols=64 Identities=42% Similarity=0.792 Sum_probs=41.7
Q ss_pred HHHHHHHhcC--CCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 3 DTLDHSESLG--HKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 3 ~~l~~a~~~~--~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
..+++++... ..++++|++++.+. ...+..+++++|++++.......++..+.++||+||+|||
T Consensus 200 ~~~~~~~~~~~~~~~~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTS 265 (652)
T 1pg4_A 200 KNVDDALKNPNVTSVEHVIVLKRTGS--------------DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTS 265 (652)
T ss_dssp HHHHHHHTSTTCCSCCEEEEECSSCC--------------CCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEEC
T ss_pred HHHHHHHhcCCcCCCCEEEEEeCCCC--------------cccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEecc
Confidence 4456665443 24678888876431 1223334567899888765444555667899999999998
No 3
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=92.54 E-value=0.47 Score=34.26 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=21.6
Q ss_pred ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
..|++++...+...+......+++++|+|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 215 (570)
T 3c5e_A 185 LNFKKLLNEASTTHHCVETGSQEASAIYFTS 215 (570)
T ss_dssp EEHHHHHHHSCSCCCCCCCBTTSEEEEEECC
T ss_pred ccHHHHhhcccccccccCCCCCCcEEEEECC
Confidence 4577776654433333456689999999998
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=88.41 E-value=1 Score=32.63 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=22.0
Q ss_pred cccHHHHHhhcCCCCC-c---eeeCCCCcEEEeeeC
Q psy10049 49 DVWWQDEMEDASTSCY-P---EWMDAEDPLFMLYTR 80 (80)
Q Consensus 49 ~~~~~~~l~~~~~~~~-~---~~~~~~dPl~IlYTS 80 (80)
+..|.+.+........ + .....+|+++|+|||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 234 (580)
T 3etc_A 199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSS 234 (580)
T ss_dssp CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEEC
T ss_pred cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeC
Confidence 4567777766544332 2 246789999999998
No 5
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=87.48 E-value=0.54 Score=33.37 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 52 WQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 52 ~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
|.+.+.......+......+|+++|+|||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 179 (517)
T 3r44_A 151 LAERLRSAAADEPAVECGGDDNLFIMYTS 179 (517)
T ss_dssp HHHHHHHCCCCCCCCCCCTTSEEEEEEEC
T ss_pred HHHHhhccCcCCCCCCCCCCCeEEEEECC
Confidence 44555444334444556789999999998
No 6
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=86.25 E-value=0.62 Score=32.98 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=19.7
Q ss_pred cHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 51 WWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
.|++++.......+......+|+++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 192 (529)
T 2v7b_A 163 LFEELIDAAAPAAKAAATGCDDIAFWLYSS 192 (529)
T ss_dssp BHHHHHHTSCCCSSCCCCCTTSEEEEEEC-
T ss_pred chhhhhccCCCcccccCCCCCCeEEEEECC
Confidence 477766543333334456789999999998
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=83.85 E-value=0.43 Score=33.99 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=20.8
Q ss_pred ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
..|.++........+......+|+++|+|||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 187 (536)
T 3ni2_A 157 LHFSELTQADENEAPQVDISPDDVVALPYSS 187 (536)
T ss_dssp EETHHHHTSCGGGCCCCCCCTTSEEECCEEC
T ss_pred cCHHHHhhccccccccCCCCccCEEEEEcCC
Confidence 4566665543333344456789999999998
No 8
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=81.82 E-value=0.94 Score=32.31 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=20.3
Q ss_pred ccHHHHHhhcCCCCCceeeCC-CCcEEEeeeC
Q psy10049 50 VWWQDEMEDASTSCYPEWMDA-EDPLFMLYTR 80 (80)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~~~-~dPl~IlYTS 80 (80)
..|.+++.......+...... +++++|+|||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 189 (549)
T 3g7s_A 158 NSLSEVMDSGSEDFENVKVNPEEDVALIPYTG 189 (549)
T ss_dssp SCHHHHHHHSCSCCCCCCCCTTTSEEECCEEC
T ss_pred cCHHHHHhcCccccccccCCCCCCEEEEEECC
Confidence 457777665444333333444 9999999998
No 9
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=80.86 E-value=1.4 Score=32.04 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 52 WQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 52 ~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
+.+................++++||+|||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 193 (617)
T 3rg2_A 165 LQDAINHPAEDFTATPSPADEVAYFQLSG 193 (617)
T ss_dssp HHHHHHSCCSSCCCCCCCTTSEEEEEECC
T ss_pred hhhhhcccccccCCCCCCCCCeEEEEECC
Confidence 44444433333344456789999999998
No 10
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=79.62 E-value=0.61 Score=31.75 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=10.1
Q ss_pred CCCcEEEeeeC
Q psy10049 70 AEDPLFMLYTR 80 (80)
Q Consensus 70 ~~dPl~IlYTS 80 (80)
.++|+||+|||
T Consensus 36 ~d~~a~Il~TS 46 (358)
T 4gs5_A 36 GGAREFVLHTS 46 (358)
T ss_dssp HTCSEEEEEEE
T ss_pred CCCCEEEEECC
Confidence 58999999998
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=78.36 E-value=1.9 Score=30.39 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=14.3
Q ss_pred CCceeeCCCCcEEEeeeC
Q psy10049 63 CYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 63 ~~~~~~~~~dPl~IlYTS 80 (80)
.+......+|+++|+|||
T Consensus 147 ~~~~~~~~~d~a~i~~TS 164 (503)
T 4fuq_A 147 FATIDRGADDLAAILYTS 164 (503)
T ss_dssp CCCCCCCTTSEEEEEECC
T ss_pred cCcCCCCCCCeEEEEECC
Confidence 344456789999999998
No 12
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=77.40 E-value=5.8 Score=28.16 Aligned_cols=11 Identities=0% Similarity=0.132 Sum_probs=9.1
Q ss_pred CCCcEEEeeeC
Q psy10049 70 AEDPLFMLYTR 80 (80)
Q Consensus 70 ~~dPl~IlYTS 80 (80)
.+++++|+|||
T Consensus 189 ~~d~a~i~~TS 199 (550)
T 3rix_A 189 DKTIALIMNSS 199 (550)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCEEEEEECC
Confidence 57899999998
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=74.01 E-value=11 Score=26.68 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=12.9
Q ss_pred eeeCCCCcEEEeeeC
Q psy10049 66 EWMDAEDPLFMLYTR 80 (80)
Q Consensus 66 ~~~~~~dPl~IlYTS 80 (80)
.....+++++|+|||
T Consensus 186 ~~~~~~d~a~i~~TS 200 (544)
T 3o83_A 186 SSTPADEVAFFQLSG 200 (544)
T ss_dssp CCCCTTSEEEEEECC
T ss_pred ccCCccceEEEEECC
Confidence 456789999999998
No 14
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=72.75 E-value=3.5 Score=29.30 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=17.7
Q ss_pred HHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 52 WQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 52 ~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
|.+.+..............+++++|+|||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 184 (562)
T 3ite_A 156 FIENLSTQDTSDILNNYPENLDAYLLYTS 184 (562)
T ss_dssp HHHHHHHSCCSCCCCCCCTTSEEEEEEEC
T ss_pred hhhhcccccccccccCCCCCCcEEEEECC
Confidence 44444433322223345689999999998
No 15
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=72.54 E-value=3.1 Score=29.71 Aligned_cols=30 Identities=3% Similarity=0.061 Sum_probs=18.2
Q ss_pred cHHHHHhhcCCC-CCceeeC-----C-CCcEEEeeeC
Q psy10049 51 WWQDEMEDASTS-CYPEWMD-----A-EDPLFMLYTR 80 (80)
Q Consensus 51 ~~~~~l~~~~~~-~~~~~~~-----~-~dPl~IlYTS 80 (80)
.|++++...... .+...+. . +++++|+|||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 201 (548)
T 2d1s_A 165 CLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSS 201 (548)
T ss_dssp BHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCS
T ss_pred cHHHHHhcCccccCCcccccccccCCCCCEEEEEeCC
Confidence 477776553222 2222232 4 9999999998
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=70.88 E-value=3.1 Score=29.25 Aligned_cols=31 Identities=19% Similarity=0.534 Sum_probs=20.3
Q ss_pred ccHHHHHhhcCCC-CCceeeCCCCcEEEeeeC
Q psy10049 50 VWWQDEMEDASTS-CYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 50 ~~~~~~l~~~~~~-~~~~~~~~~dPl~IlYTS 80 (80)
+.+.+++...... ........+++++|+|||
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 152 (511)
T 3e7w_A 121 VSAEELLENEGGSVSQDQWVKEHETFYIIYTS 152 (511)
T ss_dssp EEHHHHHTSCSCCCCGGGSCCTTSEEEEEEEC
T ss_pred ecHhhhhccccCCccccccCCCCCeEEEEECC
Confidence 4566665543322 223456789999999998
No 17
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=70.20 E-value=1.4 Score=31.48 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.4
Q ss_pred ceeeCCCCcEEEeeeC
Q psy10049 65 PEWMDAEDPLFMLYTR 80 (80)
Q Consensus 65 ~~~~~~~dPl~IlYTS 80 (80)
+.....+|+++|+|||
T Consensus 161 ~~~~~~~d~a~i~~TS 176 (590)
T 3kxw_A 161 PTSIKSNDIAFLQYTS 176 (590)
T ss_dssp CCCCCTTSEEEEEECS
T ss_pred CCCCCCCCeEEEEeCc
Confidence 3456789999999998
No 18
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=69.64 E-value=1.9 Score=30.29 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=12.1
Q ss_pred eeCCCCcEEEeeeC
Q psy10049 67 WMDAEDPLFMLYTR 80 (80)
Q Consensus 67 ~~~~~dPl~IlYTS 80 (80)
....+++++|+|||
T Consensus 149 ~~~~~~~a~i~~TS 162 (504)
T 1t5h_X 149 QREPAQPAFIFYTS 162 (504)
T ss_dssp CCCTTSEEEEEECC
T ss_pred CCCCCCeEEEEeCC
Confidence 45679999999998
No 19
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=69.39 E-value=4.2 Score=28.55 Aligned_cols=16 Identities=13% Similarity=0.503 Sum_probs=13.3
Q ss_pred ceeeCCCCcEEEeeeC
Q psy10049 65 PEWMDAEDPLFMLYTR 80 (80)
Q Consensus 65 ~~~~~~~dPl~IlYTS 80 (80)
......+|+++|+|||
T Consensus 139 ~~~~~~~d~a~i~~TS 154 (521)
T 3l8c_A 139 THSVKGDDNYYIIFTS 154 (521)
T ss_dssp SSCCCTTSEEEEEECC
T ss_pred CCCCCCCCcEEEEEcC
Confidence 3456789999999998
No 20
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=69.19 E-value=1.3 Score=31.17 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.3
Q ss_pred ceeeCCCCcEEEeeeC
Q psy10049 65 PEWMDAEDPLFMLYTR 80 (80)
Q Consensus 65 ~~~~~~~dPl~IlYTS 80 (80)
......+|+++|+|||
T Consensus 154 ~~~~~~~d~a~i~~TS 169 (509)
T 3ivr_A 154 APEFGAADGFVIIHTA 169 (509)
T ss_dssp CCCCCTTSEEEEEEEE
T ss_pred cCCCCccccEEEEeCC
Confidence 3456789999999998
No 21
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=68.02 E-value=1.7 Score=30.88 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=12.2
Q ss_pred eeCCCCcEEEeeeC
Q psy10049 67 WMDAEDPLFMLYTR 80 (80)
Q Consensus 67 ~~~~~dPl~IlYTS 80 (80)
....+|+++|+|||
T Consensus 178 ~~~~~d~a~i~~TS 191 (539)
T 1mdb_A 178 EVKSSDVAFLQLSG 191 (539)
T ss_dssp CCCTTSEEEEEECC
T ss_pred CCCcCceEEEEeCC
Confidence 45689999999998
No 22
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=65.54 E-value=3.5 Score=29.31 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=17.8
Q ss_pred ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
..|++++...... ...+.+++++|+|||
T Consensus 158 ~~~~~~~~~~~~~---~~~~~~~~a~i~~TS 185 (541)
T 1v25_A 158 LAYEEALGEEADP---VRVPERAACGMAYTT 185 (541)
T ss_dssp EEHHHHCCSCCCC---CCCCTTSEEEEEEEC
T ss_pred ccHHHHhhccCCc---ccCCCCCcEEEEECC
Confidence 3466655432211 345679999999998
No 23
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=65.39 E-value=4.1 Score=28.75 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.6
Q ss_pred eeeCCCCcEEEeeeC
Q psy10049 66 EWMDAEDPLFMLYTR 80 (80)
Q Consensus 66 ~~~~~~dPl~IlYTS 80 (80)
.....+|+++|+|||
T Consensus 150 ~~~~~~d~a~i~~TS 164 (505)
T 3nyq_A 150 DGADDGDPALVVYTS 164 (505)
T ss_dssp CCCCTTSEEEEEEEC
T ss_pred CCCCCCCeEEEEeCC
Confidence 345689999999998
No 24
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=64.48 E-value=3 Score=28.79 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=12.1
Q ss_pred ceeeCCCCcEEEeeeC
Q psy10049 65 PEWMDAEDPLFMLYTR 80 (80)
Q Consensus 65 ~~~~~~~dPl~IlYTS 80 (80)
......+++++|+|||
T Consensus 177 ~~~~~~~d~a~i~~TS 192 (480)
T 3t5a_A 177 FKEDEYPSTAYLQYTS 192 (480)
T ss_dssp CCCSSCCSEEEEECC-
T ss_pred CCCCCCCceEEEEecC
Confidence 3446689999999998
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=63.00 E-value=3.6 Score=28.75 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.3
Q ss_pred eeCCCCcEEEeeeC
Q psy10049 67 WMDAEDPLFMLYTR 80 (80)
Q Consensus 67 ~~~~~dPl~IlYTS 80 (80)
.+..+|+++|+|||
T Consensus 159 ~~~~~d~a~i~~TS 172 (501)
T 3ipl_A 159 SFNLDDIASIMFTS 172 (501)
T ss_dssp CCCTTSEEEEEECC
T ss_pred CCCCCCeEEEEECC
Confidence 45689999999998
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=60.86 E-value=1.7 Score=33.31 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=13.4
Q ss_pred ceeeCCCCcEEEeeeC
Q psy10049 65 PEWMDAEDPLFMLYTR 80 (80)
Q Consensus 65 ~~~~~~~dPl~IlYTS 80 (80)
......+|+++|+|||
T Consensus 219 ~~~~~~~d~a~i~~TS 234 (979)
T 3tsy_A 219 SVEISPDDVVALPYSS 234 (979)
T ss_dssp CSCCCTTSEEECCBCC
T ss_pred cCCCCccceEEEEeCC
Confidence 3456789999999998
No 27
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=59.84 E-value=5.1 Score=29.29 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=12.0
Q ss_pred eeCCCCcEEEeeeC
Q psy10049 67 WMDAEDPLFMLYTR 80 (80)
Q Consensus 67 ~~~~~dPl~IlYTS 80 (80)
....++++||+|||
T Consensus 160 ~~~~~d~a~iiyTS 173 (620)
T 4dg8_A 160 CFAADQIAYINFSS 173 (620)
T ss_dssp CCCTTSEEEEEEEB
T ss_pred CCCCCCeEEEEECC
Confidence 35689999999998
No 28
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=59.45 E-value=4 Score=28.65 Aligned_cols=15 Identities=13% Similarity=0.587 Sum_probs=12.9
Q ss_pred eeeCCCCcEEEeeeC
Q psy10049 66 EWMDAEDPLFMLYTR 80 (80)
Q Consensus 66 ~~~~~~dPl~IlYTS 80 (80)
.....+++++|+|||
T Consensus 139 ~~~~~~d~a~i~~TS 153 (512)
T 3fce_A 139 HAVKGDENFYIIYTS 153 (512)
T ss_dssp GSCCTTSEEEEEEEC
T ss_pred ccCCCCCeEEEEECC
Confidence 446789999999998
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=59.25 E-value=5.2 Score=28.27 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=12.0
Q ss_pred eeCCCCcEEEeeeC
Q psy10049 67 WMDAEDPLFMLYTR 80 (80)
Q Consensus 67 ~~~~~dPl~IlYTS 80 (80)
....+++++|+|||
T Consensus 172 ~~~~~d~a~i~~TS 185 (576)
T 3gqw_A 172 RPVPNDIAYLQYTS 185 (576)
T ss_dssp CCCTTSEEEEECTT
T ss_pred CCCCCCeEEEEeCC
Confidence 45589999999998
No 30
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=54.82 E-value=6.7 Score=28.04 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.8
Q ss_pred eeeCCCCcEEEeeeC
Q psy10049 66 EWMDAEDPLFMLYTR 80 (80)
Q Consensus 66 ~~~~~~dPl~IlYTS 80 (80)
..+..+|+++|+|||
T Consensus 209 ~~~~~~d~a~i~~TS 223 (570)
T 4gr5_A 209 TGVGPEDVACVMFTS 223 (570)
T ss_dssp CCCCTTSEEEEECCS
T ss_pred CCCCCCCeEEEEECC
Confidence 346789999999998
No 31
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=51.34 E-value=7.6 Score=27.83 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=11.9
Q ss_pred eeCCCCcEEEeeeC
Q psy10049 67 WMDAEDPLFMLYTR 80 (80)
Q Consensus 67 ~~~~~dPl~IlYTS 80 (80)
....+|+++|+|||
T Consensus 178 ~~~~~d~a~i~~TS 191 (563)
T 1amu_A 178 PSKSTDLAYVIYTS 191 (563)
T ss_dssp CCCTTSEEEEEEEC
T ss_pred CCCCCCeEEEEECC
Confidence 34678999999998
No 32
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=46.69 E-value=9.4 Score=30.34 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=12.7
Q ss_pred eeeCCCCcEEEeeeC
Q psy10049 66 EWMDAEDPLFMLYTR 80 (80)
Q Consensus 66 ~~~~~~dPl~IlYTS 80 (80)
....+++++||+|||
T Consensus 602 ~~~~~~~~ayiiyTS 616 (1304)
T 2vsq_A 602 TAIDPNDPAYIMYTS 616 (1304)
T ss_dssp CCCCTTSEEEEEEEC
T ss_pred CCCCCCCeEEEEeCC
Confidence 345689999999998
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=38.32 E-value=16 Score=24.97 Aligned_cols=29 Identities=3% Similarity=-0.297 Sum_probs=17.7
Q ss_pred ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
..++++..... .....++.+++++|+|||
T Consensus 71 ~~~~~l~~~~~--~~~~~~~~~~~~~i~~TS 99 (437)
T 2y27_A 71 TTKGDLRDSYP--FGMFAVPQDRISRIHASS 99 (437)
T ss_dssp BCHHHHHHTTT--TTTCSSCGGGCCEEEECC
T ss_pred CCHHHHHhcCC--CccccCChhHeEEEEECC
Confidence 34555554432 112235679999999998
No 34
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=37.66 E-value=12 Score=24.99 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=11.6
Q ss_pred eCCCCcEEEeeeC
Q psy10049 68 MDAEDPLFMLYTR 80 (80)
Q Consensus 68 ~~~~dPl~IlYTS 80 (80)
++.+++++|+|||
T Consensus 88 ~~~~~~a~i~~TS 100 (369)
T 3hgu_A 88 LPADSHPQVYESG 100 (369)
T ss_dssp SCTTCCCEEEEEC
T ss_pred CCccccEEEEECC
Confidence 4789999999998
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=37.63 E-value=16 Score=24.95 Aligned_cols=29 Identities=7% Similarity=-0.206 Sum_probs=17.8
Q ss_pred ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049 50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR 80 (80)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS 80 (80)
..++++....+ .....++.+++++|+|||
T Consensus 73 ~~~~~l~~~~p--~~~~~~~~~~~~~i~~TS 101 (443)
T 2y4o_A 73 STKNDLRDNYP--FGLFAVPREQVVRVHASS 101 (443)
T ss_dssp BCHHHHHTTTT--TTTCSSCGGGCCEEEEEC
T ss_pred CcHHHHHhhCC--CcccCCChhheEEEEECC
Confidence 34555554432 112235678999999998
No 36
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=26.50 E-value=13 Score=25.42 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=11.5
Q ss_pred eeCC-CCcEEEeeeC
Q psy10049 67 WMDA-EDPLFMLYTR 80 (80)
Q Consensus 67 ~~~~-~dPl~IlYTS 80 (80)
.++. +++++|+|||
T Consensus 81 ~~~~~~~~a~i~~TS 95 (436)
T 3qov_A 81 AGDMKRDGVRIHSSS 95 (436)
T ss_dssp CSCHHHHEEEEEECS
T ss_pred cCCCcCCeEEEEECC
Confidence 3455 8999999998
Done!