RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10049
(80 letters)
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 84.9 bits (211), Expect = 4e-21
Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 1 MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDAS 60
+K+ +D + V+ IVVK V E RDVWW D M AS
Sbjct: 169 LKEIVDEALEKCPSVEKVIVVKRT--------------GGEVPMVEGRDVWWHDLMAKAS 214
Query: 61 TSCYPEWMDAEDPLFMLYT 79
C PE MDAEDPLF+LYT
Sbjct: 215 PYCEPEPMDAEDPLFILYT 233
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 81.0 bits (201), Expect = 9e-20
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 14/79 (17%)
Query: 1 MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDAS 60
+K +D + + V+ IVV+ V+W E RD+WW + + AS
Sbjct: 189 LKANVDEALANCPSVEKVIVVRR--------------TGGDVDWVEGRDLWWHELVAGAS 234
Query: 61 TSCYPEWMDAEDPLFMLYT 79
C PE MDAEDPLF+LYT
Sbjct: 235 DECEPEPMDAEDPLFILYT 253
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 77.3 bits (191), Expect = 2e-18
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 1 MKDTLDHS-ESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDA 59
+K +D + E V+ +VV+ V W E RDVWW D M A
Sbjct: 179 LKAIVDEALEKCPVSVEHVLVVRRT----------GNP----VPWVEGRDVWWHDLMAKA 224
Query: 60 STSCYPEWMDAEDPLFMLYT 79
S C PE MD+EDPLF+LYT
Sbjct: 225 SAYCEPEPMDSEDPLFILYT 244
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 69.2 bits (169), Expect = 1e-15
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 3 DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTS 62
LD S G V C+ +Y + W E RDVWWQD + + T
Sbjct: 217 AALDESAKNGVSVGICL----------TYENQLAMKREDTKWQEGRDVWWQDVVPNYPTK 266
Query: 63 CYPEWMDAEDPLFMLYT 79
C EW+DAEDPLF+LYT
Sbjct: 267 CEVEWVDAEDPLFLLYT 283
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 48.1 bits (115), Expect = 3e-08
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 46 ENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
+W+ + +E AS E + A+DPLF+LYT
Sbjct: 146 PRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYT 179
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 35.6 bits (83), Expect = 7e-04
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 52 WQDEMEDASTSCYPEWMDAEDPLFMLYT 79
+ ME AS EW D ED + YT
Sbjct: 186 FNALMEQASDEFDIEWTDREDGAILHYT 213
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 35.4 bits (82), Expect = 0.001
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
+ E D+ + + AS +D +D +++YT
Sbjct: 102 GDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYT 139
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 33.8 bits (78), Expect = 0.004
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 48 RDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
RD+ W + M A +++ DPL++LYT
Sbjct: 198 RDLDWAELMAKAR-PVDCVPVESTDPLYILYT 228
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 30.7 bits (70), Expect = 0.053
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 40 AAVNWTENRDVWWQDEME---DASTSCYPEWMDAEDPLFMLYT 79
A + RDV + A EW+++ +P ++LYT
Sbjct: 201 APMARVAGRDVDYATLRAQHLGARVPV--EWLESNEPSYILYT 241
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase.
Length = 415
Score = 29.5 bits (67), Expect = 0.13
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 20 VVKHLPRLAASYNQI---NGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDP 73
++ LP+L ++ +GD+ N+ + W D + + + W + D
Sbjct: 319 MLPILPKLLEGGLRVLIYSGDHDLICNFLGTQ--AWIDALNWSGKDGFRPWYVSVDG 373
>gnl|CDD|219688 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. This
is a family of myo-inositol-1-phosphate synthases.
Inositol-1-phosphate catalyzes the conversion of
glucose-6- phosphate to inositol-1-phosphate, which is
then dephosphorylated to inositol. Inositol phosphates
play an important role in signal transduction.
Length = 389
Score = 28.0 bits (63), Expect = 0.42
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 11 LGHKVDSCIVVKHLPRLAASYNQINGDNKAA 41
LG K D + +K++P L GD+K A
Sbjct: 286 LGDKPDHIVPIKYVPYL--------GDSKVA 308
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 26.6 bits (59), Expect = 1.4
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 38 NKAAVNWTEN------RDVWWQDEMEDASTSCYP 65
N V W E D WWQ E + YP
Sbjct: 220 NPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYP 253
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 26.3 bits (58), Expect = 1.8
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 48 RDVWWQDEMEDASTSCYPEWMD--AEDPLFM 76
R V ++++E+A SC E + D +FM
Sbjct: 169 RVVHKEEDLENAFESCKREALAYFNNDEVFM 199
>gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 375
Score = 26.2 bits (59), Expect = 1.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 13 HKVDSCIVVKHLPRLAASYNQI 34
HKV+ C+ V L +L Y +I
Sbjct: 348 HKVNECVSVADLEKLTRIYERI 369
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 25.4 bits (55), Expect = 3.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 55 EMEDASTSCYPEWMDAEDPLFM 76
+M +A +P W+D +DP M
Sbjct: 83 DMPNAELKTFPVWVDVDDPFNM 104
>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 825
Score = 25.4 bits (56), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 38 NKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPL 74
N AV+ +N WW D +++ +S Y E+ D +
Sbjct: 88 NHMAVHLEQNP--WWWDVLKNGPSSAYAEYFDIDWDP 122
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins,
facilitating membrane associations and specific
protein-protein interactions. Alpha (2)-M is a major
carrier protein in serum and involved in the
immobilization and entrapment of proteases. PZP is a
pregnancy associated protein. Alpha (2)-M and PZP are
known to bind to and, may modulate, the activity of
placental protein-14 in T-cell growth and cytokine
production thereby protecting the allogeneic fetus from
attack by the maternal immune system.
Length = 300
Score = 24.8 bits (54), Expect = 5.1
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 27 LAASYNQINGDNKAAVNWTENRDV------WWQDEMEDASTSCYPEW 67
LA + + D K A+ W +R +D S SCY EW
Sbjct: 197 LALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEW 243
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 24.7 bits (53), Expect = 5.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 56 MEDASTSCYPEWMDAEDPLFM 76
M +A +P W+D +DP M
Sbjct: 1 MPNAELKTFPVWVDVDDPFNM 21
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present
in this CD. The active site cysteine and glutamate
residues are not conserved in the human ALDH16A1
protein sequence.
Length = 480
Score = 24.7 bits (54), Expect = 5.9
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 6 DHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYP 65
H S GH ++ V + + N G+ A+V E DV D A+ + +
Sbjct: 17 AHDRSFGHFINGKWVKPENRKSFPTINPATGEVLASVLQAEEEDV---DAAVAAARTAFE 73
Query: 66 EW 67
W
Sbjct: 74 SW 75
>gnl|CDD|202524 pfam03068, PAD, Protein-arginine deiminase (PAD). Members of
this family are found in mammals. In the presence of
calcium ions, PAD enzymes EC:3.5.3.15 catalyze the
post-translational modification reaction responsible
for the formation of citrulline residues: Protein
L-arginine + H2O <=> Protein L-citrulline + NH3.
Several types are recognised (and included in the
family) on the basis of molecular mass, substrate
specificity, and tissue localisation. The expression of
type I PAD is known to be under the control of
oestrogen.
Length = 385
Score = 24.7 bits (54), Expect = 6.3
Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 46 ENR-DVWWQDEME 57
ENR D W QDEME
Sbjct: 64 ENRNDRWIQDEME 76
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 24.6 bits (53), Expect = 7.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 56 MEDASTSCYPEWMDAE 71
MED +CYP WM E
Sbjct: 128 MEDGKEACYPYWMPHE 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.129 0.423
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,868,507
Number of extensions: 273345
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 26
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)