RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10049
(80 letters)
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 89.9 bits (224), Expect = 4e-23
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 1 MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDAS 60
K +D + V +V + N +V + RD+ W E +
Sbjct: 205 TKRIVDDALRETPGVRHVLVYRKT-------------NNPSVAFHAPRDLDWATEKKKYK 251
Query: 61 TSCYPEWMDAEDPLFMLYT 79
T +D+EDPLF+LYT
Sbjct: 252 TYYPCTPVDSEDPLFLLYT 270
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 88.4 bits (220), Expect = 2e-22
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 1 MKDTLDH--SESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMED 58
+K +D V+ IV+K + ++W E RD+WW+D +E
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKR--------------TGSDIDWQEGRDLWWRDLIEK 243
Query: 59 ASTSCYPEWMDAEDPLFMLYT 79
AS PE M+AEDPLF+LYT
Sbjct: 244 ASPEHQPEAMNAEDPLFILYT 264
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 43.0 bits (102), Expect = 1e-06
Identities = 6/58 (10%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 24 LPRLAASYNQINGDNKAAVNWTENRDVW--WQDEMEDASTSCYPEWMDAEDPLFMLYT 79
+ + ++ + ++ D W ++ + +AST+ + +++ + +T
Sbjct: 157 IQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFT 214
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 42.2 bits (100), Expect = 3e-06
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 6 DHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTS--- 62
+ + +VD + ++ GD + ++ E+E++S
Sbjct: 165 IAEDDVPEQVDE--AHAECGDIPLKKAKVGGDVLE-------GWIDFRKELEESSPIFER 215
Query: 63 -CYPEWMDAEDPLFMLYT 79
ED + ++
Sbjct: 216 PTGEVSTKNEDICLVYFS 233
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 32.2 bits (74), Expect = 0.008
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 47 NRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
+++ ++ A+ + +D F LY+
Sbjct: 159 RLAPLFEELIDAAAPAAKAAATGCDDIAFWLYS 191
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 26.0 bits (58), Expect = 1.2
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 20 VVKHLPRLAASYNQINGDNKAAVNW-TENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLY 78
+V P I A V + D AS + A+D +LY
Sbjct: 103 IVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILY 162
Query: 79 T 79
T
Sbjct: 163 T 163
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide
reductase, manganese, oxidoreductase; 1.90A {Bacillus
subtilis}
Length = 350
Score = 25.8 bits (57), Expect = 1.7
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 22 KHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPL 74
H L + + A NW+++ D + Q + + + W+ E L
Sbjct: 9 HHSSGLVPRGSHMMTKIYDAANWSKHEDDFTQ-MFYNQNVKQF--WLPEEIAL 58
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural
genomics, joint center for structural JCSG; 2.97A
{Corynebacterium glutamicum}
Length = 369
Score = 25.7 bits (57), Expect = 2.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 8 SESLGHKVDSCIVVKHLPRLAASYNQI 34
S HK D V+ + +AA Q
Sbjct: 340 DPSFAHKRDEQCPVEQITDVAAILKQY 366
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
GGQ domain, translation; NMR {Mus musculus}
Length = 115
Score = 24.6 bits (54), Expect = 3.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 14 KVDSCIVVKHLP 25
K +C+V+KH+P
Sbjct: 65 KTSNCVVLKHVP 76
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A
{Caldicellulosiruptor bescii}
Length = 196
Score = 24.6 bits (53), Expect = 4.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 32 NQINGDNKAAVNWTENRDVWWQDEMEDAST 61
+G + N EN V W+D EDA T
Sbjct: 64 PGCDGIHCYGDNVVEN--VVWEDVGEDALT 91
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline,
low-molecular-weight; 2.30A {Bacillus SP} SCOP:
b.80.1.1
Length = 197
Score = 24.6 bits (53), Expect = 4.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 49 DVWWQDEMEDAST 61
+V W+D EDA T
Sbjct: 75 NVIWEDVGEDALT 87
>3pm2_A Odorant binding protein (AGAP007287-PA); alpha helical protein,
odorant MOLE antennae, transport protein; 1.80A
{Anopheles gambiae}
Length = 173
Score = 24.5 bits (52), Expect = 4.8
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 32 NQINGDN--KAAVNWTENRDVWWQDEMEDASTSCYPE 66
+I+ + K ++ T++ W DA C+
Sbjct: 70 GKIDREALTKLYLDSTKSMAPEWNKITLDAIDGCFKM 106
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed
parallel beta helix fold; 1.45A {Erwinia chrysanthemi}
PDB: 3b8y_A* 3b90_A
Length = 344
Score = 24.1 bits (51), Expect = 6.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 49 DVWWQDEMEDAST 61
+V W+D EDA+T
Sbjct: 186 NVIWEDICEDAAT 198
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 23.7 bits (52), Expect = 9.8
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 52 WQDEMEDASTSCYPEWMDAEDPLFMLYT 79
QD + + A++ + +
Sbjct: 165 LQDAINHPAEDFTATPSPADEVAYFQLS 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.423
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,218,989
Number of extensions: 53697
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 18
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)