RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10049
         (80 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 42.3 bits (99), Expect = 9e-07
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 36  GDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
               + ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 217 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 260


>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15
          [TaxId: 1409]}
          Length = 197

 Score = 23.6 bits (51), Expect = 2.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 50 VWWQDEMEDAST 61
          V W+D  EDA T
Sbjct: 76 VIWEDVGEDALT 87


>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
           {Bacillus anthracis [TaxId: 1392]}
          Length = 509

 Score = 23.0 bits (49), Expect = 5.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 30  SYNQINGDNKAAVNWTE 46
           SYN+I   NKA + WT+
Sbjct: 341 SYNKIAPGNKAYIEWTD 357


>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
          catalytic C-terminal domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 370

 Score = 22.4 bits (48), Expect = 10.0
 Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 1/18 (5%)

Query: 46 ENR-DVWWQDEMEDASTS 62
          EN  D W QDEME     
Sbjct: 48 ENMDDQWMQDEMEIGYIQ 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.423 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 310,296
Number of extensions: 10796
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 6
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)