BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10051
         (63 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
           Complex With Amp
          Length = 663

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVE 55
           FEGTP +P   RYW I++++KV QFY APTA+R L + G+  ++ H ++
Sbjct: 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK 384


>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
           Coa Bound
 pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
           Coa Bound
          Length = 652

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373


>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
 pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
          Length = 652

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373


>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
 pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
 pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
 pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
          Length = 652

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373


>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
 pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
          Length = 652

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373


>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
 pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
          Length = 652

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373


>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
 pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
          Length = 652

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373


>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
 pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
          Length = 652

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373


>pdb|1V77|A Chain A, Crystal Structure Of The Ph1877 Protein
 pdb|2CZV|A Chain A, Crystal Structure Of Archeal Rnase P Protein Ph1481p In
           Complex With Ph1877p
 pdb|2CZV|B Chain B, Crystal Structure Of Archeal Rnase P Protein Ph1481p In
           Complex With Ph1877p
          Length = 212

 Score = 25.4 bits (54), Expect = 8.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 18  RYWSIVEKYKVNQFYTAPTAIRTLMKY 44
           + W +VEKYKV +F T+    +  ++Y
Sbjct: 151 KAWKLVEKYKVRRFLTSSAQEKWDVRY 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.134    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,263,656
Number of Sequences: 62578
Number of extensions: 74821
Number of successful extensions: 95
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 10
length of query: 63
length of database: 14,973,337
effective HSP length: 34
effective length of query: 29
effective length of database: 12,845,685
effective search space: 372524865
effective search space used: 372524865
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)