Query psy10051
Match_columns 63
No_of_seqs 150 out of 1099
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 16:40:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0365 Acs Acyl-coenzyme A sy 99.4 7.1E-13 1.5E-17 85.5 5.8 55 2-59 240-294 (528)
2 PLN02654 acetate-CoA ligase 99.0 1.9E-09 4.1E-14 70.6 6.1 58 2-59 344-401 (666)
3 TIGR02188 Ac_CoA_lig_AcsA acet 98.8 2.9E-08 6.3E-13 64.3 6.3 58 2-59 305-362 (625)
4 TIGR02316 propion_prpE propion 98.8 2.9E-08 6.3E-13 64.5 6.3 58 2-59 301-358 (628)
5 KOG1175|consensus 98.7 2.5E-08 5.3E-13 65.8 4.9 54 2-57 308-361 (626)
6 PRK03584 acetoacetyl-CoA synth 98.7 7.2E-08 1.6E-12 62.9 6.2 57 2-58 330-386 (655)
7 TIGR01217 ac_ac_CoA_syn acetoa 98.7 6.4E-08 1.4E-12 63.4 5.9 58 2-59 331-388 (652)
8 PRK10524 prpE propionyl-CoA sy 98.6 1.8E-07 4E-12 60.6 6.0 57 2-58 302-358 (629)
9 PLN03052 acetate--CoA ligase; 98.6 1.4E-07 2.9E-12 62.9 5.2 53 2-59 423-475 (728)
10 PRK00174 acetyl-CoA synthetase 98.5 4.2E-07 9.2E-12 59.1 6.2 57 2-58 314-370 (637)
11 PTZ00237 acetyl-CoA synthetase 98.5 5.6E-07 1.2E-11 59.0 6.0 57 2-58 322-383 (647)
12 COG1021 EntE Peptide arylation 98.4 5.1E-07 1.1E-11 57.6 4.3 55 2-62 258-312 (542)
13 KOG1176|consensus 98.4 8.6E-07 1.9E-11 57.9 5.4 44 14-59 260-303 (537)
14 KOG1177|consensus 98.3 1.1E-06 2.5E-11 57.0 4.3 51 2-57 302-352 (596)
15 PLN03051 acyl-activating enzym 98.2 4E-06 8.7E-11 53.3 5.2 54 2-58 186-239 (499)
16 PRK04319 acetyl-CoA synthetase 97.9 4.4E-05 9.5E-10 49.2 6.0 53 2-57 273-325 (570)
17 PRK07868 acyl-CoA synthetase; 97.9 3.1E-05 6.8E-10 53.3 5.1 32 14-45 681-712 (994)
18 PRK08276 long-chain-fatty-acid 97.8 6.7E-05 1.4E-09 47.4 5.6 53 3-59 214-266 (502)
19 PLN02574 4-coumarate--CoA liga 97.8 6.2E-05 1.4E-09 48.5 4.9 39 3-45 272-310 (560)
20 PRK07788 acyl-CoA synthetase; 97.8 8.4E-05 1.8E-09 47.6 5.3 33 14-46 282-314 (549)
21 PRK13382 acyl-CoA synthetase; 97.7 0.00014 3E-09 46.7 5.2 32 14-45 271-302 (537)
22 PRK13390 acyl-CoA synthetase; 97.7 0.00013 2.9E-09 46.1 5.0 39 3-45 222-260 (501)
23 COG0318 CaiC Acyl-CoA syntheta 97.6 0.00017 3.7E-09 46.6 5.3 42 3-46 242-283 (534)
24 PLN02860 o-succinylbenzoate-Co 97.6 0.00013 2.8E-09 47.1 4.7 39 3-45 240-278 (563)
25 PRK06334 long chain fatty acid 97.6 0.00017 3.8E-09 46.4 5.2 32 14-45 260-291 (539)
26 PRK06188 acyl-CoA synthetase; 97.6 0.00021 4.6E-09 45.4 5.6 41 2-46 234-274 (524)
27 PLN02246 4-coumarate--CoA liga 97.6 0.00019 4.2E-09 45.9 5.3 40 2-45 251-290 (537)
28 PRK06839 acyl-CoA synthetase; 97.6 0.00023 4.9E-09 44.8 5.5 33 14-46 225-257 (496)
29 PRK07470 acyl-CoA synthetase; 97.5 0.0003 6.6E-09 44.8 5.5 52 3-58 232-283 (528)
30 PRK05605 long-chain-fatty-acid 97.5 0.00029 6.2E-09 45.4 5.2 40 3-46 290-329 (573)
31 PRK12406 long-chain-fatty-acid 97.5 0.0003 6.4E-09 44.6 5.2 44 14-57 230-273 (509)
32 PRK08316 acyl-CoA synthetase; 97.5 0.0004 8.7E-09 43.9 5.6 41 2-46 239-279 (523)
33 PRK07008 long-chain-fatty-acid 97.5 0.00046 9.9E-09 44.3 5.6 33 14-46 254-286 (539)
34 PRK13391 acyl-CoA synthetase; 97.5 0.00042 9.2E-09 44.0 5.3 40 2-45 226-265 (511)
35 PRK08314 long-chain-fatty-acid 97.4 0.00034 7.5E-09 44.6 4.8 40 2-45 258-297 (546)
36 PRK06145 acyl-CoA synthetase; 97.4 0.00049 1.1E-08 43.4 5.4 33 14-46 225-257 (497)
37 PRK09274 peptide synthase; Pro 97.4 0.00025 5.3E-09 45.5 4.0 44 13-58 248-291 (552)
38 PLN03102 acyl-activating enzym 97.4 0.00057 1.2E-08 44.4 5.4 40 2-45 253-292 (579)
39 PRK08633 2-acyl-glycerophospho 97.4 0.00061 1.3E-08 46.9 5.6 43 14-58 859-901 (1146)
40 PRK05857 acyl-CoA synthetase; 97.3 0.00074 1.6E-08 43.4 5.4 32 14-45 247-278 (540)
41 PLN02330 4-coumarate--CoA liga 97.3 0.00053 1.2E-08 44.0 4.7 39 3-45 255-293 (546)
42 TIGR03205 pimA dicarboxylate-- 97.3 0.00075 1.6E-08 43.2 5.0 32 14-45 273-304 (541)
43 PRK06710 long-chain-fatty-acid 97.3 0.00078 1.7E-08 43.3 4.9 32 14-45 284-315 (563)
44 PRK06187 long-chain-fatty-acid 97.3 0.001 2.3E-08 41.9 5.3 40 3-46 235-274 (521)
45 PRK07638 acyl-CoA synthetase; 97.2 0.00066 1.4E-08 42.9 4.4 39 2-44 210-248 (487)
46 PRK05852 acyl-CoA synthetase; 97.2 0.0013 2.7E-08 42.1 5.4 33 14-46 254-286 (534)
47 PRK13295 cyclohexanecarboxylat 97.2 0.0012 2.7E-08 42.4 5.3 39 3-45 266-304 (547)
48 PRK08008 caiC putative crotono 97.2 0.0013 2.8E-08 41.8 5.1 40 3-46 242-281 (517)
49 PRK06164 acyl-CoA synthetase; 97.1 0.0013 2.8E-08 42.1 4.9 31 14-44 256-286 (540)
50 PLN02479 acetate-CoA ligase 97.1 0.0015 3.3E-08 42.2 5.3 32 14-45 270-301 (567)
51 PRK07656 long-chain-fatty-acid 97.1 0.0018 3.9E-08 40.9 5.4 33 14-46 242-274 (513)
52 TIGR02275 DHB_AMP_lig 2,3-dihy 97.1 0.002 4.3E-08 41.2 5.5 32 14-45 260-291 (527)
53 PRK08279 long-chain-acyl-CoA s 97.1 0.0019 4.1E-08 42.0 5.3 32 14-45 275-306 (600)
54 PRK06178 acyl-CoA synthetase; 97.1 0.0022 4.7E-08 41.4 5.6 40 2-45 278-317 (567)
55 PRK08315 AMP-binding domain pr 97.0 0.0022 4.9E-08 41.1 5.4 32 14-45 276-307 (559)
56 TIGR03098 ligase_PEP_1 acyl-Co 97.0 0.0018 4E-08 40.9 5.0 39 2-44 228-266 (515)
57 PRK12583 acyl-CoA synthetase; 97.0 0.0021 4.6E-08 41.1 5.2 32 14-45 278-309 (558)
58 PRK13383 acyl-CoA synthetase; 97.0 0.0024 5.1E-08 40.8 5.3 32 14-45 251-282 (516)
59 PRK03640 O-succinylbenzoic aci 97.0 0.0016 3.5E-08 40.9 4.5 39 2-44 208-246 (483)
60 PRK06155 crotonobetaine/carnit 97.0 0.0025 5.3E-08 41.1 5.3 40 3-46 248-287 (542)
61 PF00501 AMP-binding: AMP-bind 96.9 0.00082 1.8E-08 41.4 2.6 42 2-44 223-264 (417)
62 TIGR03208 cyc_hxne_CoA_lg cycl 96.9 0.003 6.4E-08 40.5 5.2 31 14-44 271-301 (538)
63 PRK05677 long-chain-fatty-acid 96.9 0.0029 6.2E-08 40.9 5.1 32 14-45 287-318 (562)
64 PLN02614 long-chain acyl-CoA s 96.9 0.0023 5E-08 42.6 4.7 30 14-43 302-331 (666)
65 PRK07529 AMP-binding domain pr 96.9 0.0042 9.1E-08 40.9 5.8 40 16-58 297-336 (632)
66 PRK06018 putative acyl-CoA syn 96.9 0.0026 5.6E-08 40.9 4.6 32 14-45 255-286 (542)
67 PRK07867 acyl-CoA synthetase; 96.9 0.004 8.6E-08 40.1 5.4 40 3-46 221-260 (529)
68 PRK12492 long-chain-fatty-acid 96.9 0.0039 8.4E-08 40.3 5.3 43 14-58 294-336 (562)
69 TIGR03089 conserved hypothetic 96.8 0.0012 2.6E-08 38.8 2.6 24 2-29 204-227 (227)
70 PRK08751 putative long-chain f 96.8 0.0034 7.3E-08 40.4 4.8 42 14-57 290-331 (560)
71 TIGR02262 benz_CoA_lig benzoat 96.8 0.0051 1.1E-07 39.1 5.3 40 3-45 231-270 (508)
72 PRK07786 long-chain-fatty-acid 96.7 0.0062 1.3E-07 39.2 5.4 41 3-45 243-283 (542)
73 PLN02861 long-chain-fatty-acid 96.7 0.0042 9E-08 41.2 4.6 30 14-43 299-328 (660)
74 PRK08162 acyl-CoA synthetase; 96.7 0.0071 1.5E-07 38.7 5.4 33 14-46 257-289 (545)
75 PTZ00342 acyl-CoA synthetase; 96.6 0.0044 9.6E-08 42.1 4.5 29 15-43 381-409 (746)
76 PRK08308 acyl-CoA synthetase; 96.6 0.0064 1.4E-07 37.9 4.9 39 3-45 170-208 (414)
77 PRK07059 Long-chain-fatty-acid 96.6 0.0077 1.7E-07 38.8 5.3 33 14-46 288-320 (557)
78 PLN02736 long-chain acyl-CoA s 96.6 0.0049 1.1E-07 40.7 4.5 29 15-43 296-324 (651)
79 PRK10946 entE enterobactin syn 96.6 0.0077 1.7E-07 38.7 5.2 31 14-44 259-289 (536)
80 PRK08043 bifunctional acyl-[ac 96.5 0.0078 1.7E-07 40.2 4.9 40 2-44 433-472 (718)
81 PRK13388 acyl-CoA synthetase; 96.4 0.011 2.5E-07 38.1 5.3 32 14-45 226-257 (540)
82 PRK09088 acyl-CoA synthetase; 96.4 0.011 2.3E-07 37.4 5.2 39 3-45 204-244 (488)
83 TIGR01734 D-ala-DACP-lig D-ala 96.4 0.0072 1.6E-07 38.2 4.3 42 2-44 208-249 (502)
84 PRK07787 acyl-CoA synthetase; 96.4 0.0098 2.1E-07 37.6 4.9 31 14-45 204-234 (471)
85 PRK08180 feruloyl-CoA synthase 96.4 0.008 1.7E-07 39.4 4.6 43 2-44 279-321 (614)
86 TIGR02155 PA_CoA_ligase phenyl 96.4 0.009 1.9E-07 37.5 4.7 31 14-44 154-184 (422)
87 PRK10252 entF enterobactin syn 96.4 0.011 2.3E-07 41.6 5.4 42 2-44 665-706 (1296)
88 PRK08974 long-chain-fatty-acid 96.4 0.012 2.5E-07 38.0 5.2 32 14-45 286-317 (560)
89 PRK06087 short chain acyl-CoA 96.4 0.012 2.6E-07 37.8 5.2 38 3-44 256-293 (547)
90 PRK04813 D-alanine--poly(phosp 96.1 0.016 3.5E-07 36.5 4.6 41 3-44 211-251 (503)
91 PRK06060 acyl-CoA synthetase; 96.1 0.021 4.6E-07 38.0 5.3 31 14-44 223-253 (705)
92 PRK05620 long-chain-fatty-acid 96.0 0.015 3.2E-07 37.7 4.4 31 14-44 259-289 (576)
93 PRK12316 peptide synthase; Pro 96.0 0.022 4.7E-07 45.4 5.5 43 2-45 722-764 (5163)
94 PRK12316 peptide synthase; Pro 95.9 0.023 5E-07 45.2 5.4 42 2-45 4761-4802(5163)
95 TIGR03443 alpha_am_amid L-amin 95.9 0.031 6.8E-07 39.8 5.8 31 14-44 493-523 (1389)
96 PRK12467 peptide synthase; Pro 95.8 0.031 6.7E-07 43.8 5.4 42 2-45 3304-3345(3956)
97 PRK12467 peptide synthase; Pro 95.7 0.03 6.4E-07 43.8 5.1 42 2-44 1785-1826(3956)
98 PRK05851 long-chain-fatty-acid 95.6 0.011 2.4E-07 38.0 2.4 29 15-43 233-261 (525)
99 PRK05691 peptide synthase; Val 95.5 0.04 8.7E-07 43.4 5.2 43 2-45 1340-1382(4334)
100 PRK07514 malonyl-CoA synthase; 95.5 0.037 7.9E-07 35.0 4.4 37 3-45 225-261 (504)
101 PRK07798 acyl-CoA synthetase; 95.4 0.053 1.2E-06 34.4 4.9 35 2-38 245-279 (533)
102 PRK06814 acylglycerophosphoeth 95.1 0.074 1.6E-06 37.2 5.3 39 3-44 862-900 (1140)
103 TIGR01733 AA-adenyl-dom amino 95.1 0.059 1.3E-06 33.1 4.4 42 3-45 188-229 (408)
104 TIGR01923 menE O-succinylbenzo 94.9 0.043 9.2E-07 34.1 3.5 29 17-45 187-215 (436)
105 PRK12582 acyl-CoA synthetase; 94.8 0.057 1.2E-06 35.6 3.9 28 17-44 306-333 (624)
106 PLN02430 long-chain-fatty-acid 94.6 0.094 2E-06 35.1 4.6 29 15-43 300-328 (660)
107 KOG1179|consensus 94.5 0.099 2.1E-06 35.3 4.4 42 2-47 310-351 (649)
108 PTZ00297 pantothenate kinase; 94.3 0.082 1.8E-06 38.8 4.0 30 14-43 676-705 (1452)
109 PRK05691 peptide synthase; Val 93.3 0.21 4.6E-06 39.7 4.8 42 2-44 3936-3977(4334)
110 TIGR02372 4_coum_CoA_lig 4-cou 92.8 0.2 4.3E-06 31.7 3.6 30 14-45 173-202 (386)
111 PRK07824 O-succinylbenzoic aci 92.7 0.65 1.4E-05 28.4 5.7 32 14-45 111-144 (358)
112 PRK12476 putative fatty-acid-- 91.9 0.1 2.2E-06 34.3 1.5 31 14-44 273-305 (612)
113 PRK07769 long-chain-fatty-acid 91.5 0.2 4.4E-06 33.0 2.6 29 15-43 260-291 (631)
114 PRK07768 long-chain-fatty-acid 91.3 0.2 4.4E-06 32.2 2.4 29 15-43 234-262 (545)
115 PRK07445 O-succinylbenzoic aci 87.4 0.88 1.9E-05 29.0 3.2 25 20-44 200-224 (452)
116 PTZ00216 acyl-CoA synthetase; 86.9 1.7 3.8E-05 29.4 4.4 22 22-43 356-377 (700)
117 COG1022 FAA1 Long-chain acyl-C 86.8 2.1 4.6E-05 29.2 4.8 30 14-43 266-295 (613)
118 PRK09192 acyl-CoA synthetase; 86.7 0.56 1.2E-05 30.6 2.0 29 15-43 258-286 (579)
119 PLN02387 long-chain-fatty-acid 86.4 0.72 1.6E-05 31.2 2.5 27 17-43 337-363 (696)
120 COG1020 EntF Non-ribosomal pep 84.3 3.6 7.8E-05 27.2 4.9 41 3-44 434-474 (642)
121 KOG1256|consensus 82.7 3.3 7.3E-05 28.7 4.3 36 3-43 329-364 (691)
122 PRK05850 acyl-CoA synthetase; 81.8 1.5 3.2E-05 28.6 2.4 24 15-39 247-270 (578)
123 TIGR03335 F390_ftsA coenzyme F 81.0 5.5 0.00012 25.6 4.7 27 17-43 166-192 (445)
124 COG1541 PaaK Coenzyme F390 syn 78.5 5 0.00011 26.5 3.9 30 15-44 170-199 (438)
125 PF02776 TPP_enzyme_N: Thiamin 78.2 2.3 5E-05 23.8 2.1 21 16-36 4-24 (172)
126 TIGR03845 sulfopyru_alph sulfo 76.7 2.3 4.9E-05 23.9 1.8 21 17-37 2-22 (157)
127 TIGR02304 aden_form_hyp probab 73.9 7.2 0.00016 25.4 3.8 30 15-44 175-204 (430)
128 cd07039 TPP_PYR_POX Pyrimidine 64.2 6.6 0.00014 22.0 1.9 22 16-37 3-24 (164)
129 PF13790 DUF4182: Domain of un 63.8 2.7 5.9E-05 18.4 0.2 18 17-34 10-27 (38)
130 TIGR02884 spore_pdaA delta-lac 60.7 32 0.0007 20.2 5.7 41 6-46 42-90 (224)
131 cd07038 TPP_PYR_PDC_IPDC_like 60.1 7.2 0.00016 21.8 1.6 18 18-35 2-19 (162)
132 cd07034 TPP_PYR_PFOR_IOR-alpha 58.4 9.2 0.0002 20.9 1.8 20 16-35 2-21 (160)
133 cd07035 TPP_PYR_POX_like Pyrim 57.1 8.5 0.00018 20.9 1.5 19 18-36 2-20 (155)
134 PF14201 DUF4318: Domain of un 56.6 21 0.00045 17.9 2.7 20 7-26 8-27 (74)
135 PRK09189 uroporphyrinogen-III 56.4 39 0.00084 19.8 4.5 41 4-44 147-188 (240)
136 PF10686 DUF2493: Protein of u 55.5 22 0.00047 17.4 2.7 26 2-27 3-28 (71)
137 cd07037 TPP_PYR_MenD Pyrimidin 53.3 11 0.00023 21.3 1.5 18 19-36 3-20 (162)
138 TIGR02764 spore_ybaN_pdaB poly 52.8 41 0.00089 19.0 5.8 42 5-46 10-59 (191)
139 PF11103 DUF2887: Protein of u 51.3 11 0.00024 22.3 1.4 30 34-63 12-41 (200)
140 PRK09029 O-succinylbenzoic aci 48.2 32 0.00068 21.8 3.2 27 17-45 210-236 (458)
141 TIGR00173 menD 2-succinyl-5-en 46.9 16 0.00036 23.5 1.8 21 16-36 3-23 (432)
142 TIGR03662 Chlor_Arch_YYY Chlor 45.4 19 0.00042 25.3 2.0 23 14-36 668-690 (723)
143 PF04914 DltD_C: DltD C-termin 44.1 8.9 0.00019 21.1 0.3 36 8-43 30-65 (130)
144 TIGR03006 pepcterm_polyde poly 43.7 67 0.0014 19.6 4.0 32 15-46 29-68 (265)
145 cd03409 Chelatase_Class_II Cla 43.1 18 0.00039 18.0 1.3 25 14-38 45-69 (101)
146 TIGR02873 spore_ylxY probable 43.0 78 0.0017 19.4 5.5 31 16-46 100-138 (268)
147 PF01475 FUR: Ferric uptake re 43.0 21 0.00046 18.7 1.6 27 14-42 24-50 (120)
148 COG4004 Uncharacterized protei 42.5 34 0.00074 17.9 2.3 17 14-30 12-28 (96)
149 PF13344 Hydrolase_6: Haloacid 42.2 23 0.00049 18.2 1.6 28 7-34 10-37 (101)
150 PF04059 RRM_2: RNA recognitio 41.9 50 0.0011 17.2 2.9 24 3-26 2-25 (97)
151 COG0735 Fur Fe2+/Zn2+ uptake r 40.1 36 0.00079 18.8 2.3 28 14-43 37-64 (145)
152 PF00102 Y_phosphatase: Protei 39.5 43 0.00092 19.1 2.7 24 11-34 50-73 (235)
153 PRK07449 2-succinyl-5-enolpyru 39.3 26 0.00056 23.3 1.9 22 16-37 12-33 (568)
154 TIGR03505 FimV_core FimV N-ter 39.2 23 0.0005 17.5 1.3 28 18-45 2-29 (74)
155 PRK09462 fur ferric uptake reg 38.9 37 0.0008 18.6 2.2 27 14-42 34-60 (148)
156 PRK07524 hypothetical protein; 38.8 26 0.00056 23.2 1.8 22 16-37 5-26 (535)
157 PRK09124 pyruvate dehydrogenas 38.6 26 0.00056 23.4 1.8 21 16-36 6-26 (574)
158 PRK12474 hypothetical protein; 38.4 26 0.00057 23.1 1.8 22 16-37 8-29 (518)
159 PRK08155 acetolactate synthase 38.2 27 0.00058 23.3 1.8 22 16-37 16-37 (564)
160 PRK07586 hypothetical protein; 38.1 27 0.00059 22.9 1.9 22 16-37 4-25 (514)
161 TIGR03394 indol_phenyl_DC indo 37.9 27 0.00058 23.3 1.8 20 16-35 3-22 (535)
162 PRK08979 acetolactate synthase 36.5 30 0.00066 23.2 1.9 21 16-36 7-27 (572)
163 PRK07064 hypothetical protein; 36.4 30 0.00064 22.9 1.8 21 16-36 6-26 (544)
164 COG0028 IlvB Thiamine pyrophos 36.3 31 0.00067 23.4 1.9 21 16-36 5-25 (550)
165 PLN02573 pyruvate decarboxylas 35.9 30 0.00064 23.4 1.8 20 16-35 19-38 (578)
166 PRK08273 thiamine pyrophosphat 35.9 30 0.00065 23.3 1.8 21 16-36 6-26 (597)
167 PRK06882 acetolactate synthase 35.8 31 0.00067 23.1 1.8 21 16-36 7-27 (574)
168 TIGR01504 glyox_carbo_lig glyo 35.0 32 0.0007 23.2 1.8 21 16-36 6-26 (588)
169 PF00875 DNA_photolyase: DNA p 34.2 64 0.0014 17.7 2.8 28 3-34 68-95 (165)
170 PF14601 TFX_C: DNA_binding pr 34.2 70 0.0015 16.3 2.8 31 16-46 29-59 (84)
171 PRK08327 acetolactate synthase 33.8 35 0.00076 22.9 1.9 20 16-35 10-29 (569)
172 COG4026 Uncharacterized protei 33.6 48 0.001 20.4 2.2 36 5-43 11-52 (290)
173 PRK07979 acetolactate synthase 33.5 37 0.00079 22.8 1.9 22 16-37 7-28 (574)
174 PRK06725 acetolactate synthase 33.5 36 0.00079 22.9 1.9 21 16-36 18-38 (570)
175 TIGR03393 indolpyr_decarb indo 33.2 35 0.00075 22.7 1.8 21 16-36 4-24 (539)
176 cd06586 TPP_enzyme_PYR Pyrimid 32.9 36 0.00078 18.2 1.6 19 18-36 2-20 (154)
177 PRK08199 thiamine pyrophosphat 32.4 37 0.00079 22.7 1.8 22 16-37 11-32 (557)
178 TIGR02260 benz_CoA_red_B benzo 32.3 72 0.0016 20.8 3.0 30 4-33 269-298 (413)
179 PRK07092 benzoylformate decarb 32.0 37 0.00081 22.5 1.8 22 16-37 15-36 (530)
180 cd03412 CbiK_N Anaerobic cobal 32.0 30 0.00064 18.6 1.1 25 14-38 56-80 (127)
181 TIGR02418 acolac_catab acetola 31.9 39 0.00084 22.4 1.8 20 17-36 3-22 (539)
182 cd07153 Fur_like Ferric uptake 31.8 57 0.0012 16.7 2.2 27 14-42 17-43 (116)
183 TIGR03875 RNA_lig_partner RNA 31.8 91 0.002 18.7 3.2 29 16-44 27-58 (206)
184 cd04910 ACT_AK-Ectoine_1 ACT d 31.6 60 0.0013 15.9 2.1 16 17-32 19-34 (71)
185 PRK00923 sirohydrochlorin coba 31.6 70 0.0015 16.8 2.6 25 14-38 46-70 (126)
186 TIGR03254 oxalate_oxc oxalyl-C 31.6 40 0.00087 22.5 1.9 22 16-37 6-27 (554)
187 PRK06154 hypothetical protein; 31.5 41 0.00089 22.6 1.9 20 16-35 23-42 (565)
188 PRK09107 acetolactate synthase 31.5 42 0.0009 22.7 1.9 20 16-35 14-33 (595)
189 PRK06466 acetolactate synthase 31.1 41 0.00089 22.6 1.8 22 16-37 7-28 (574)
190 COG5427 Uncharacterized membra 30.9 85 0.0018 21.5 3.2 22 14-35 626-647 (684)
191 COG0669 CoaD Phosphopantethein 30.8 37 0.00081 19.5 1.4 12 2-16 2-13 (159)
192 PRK07789 acetolactate synthase 30.7 42 0.00092 22.7 1.9 21 16-36 34-54 (612)
193 PRK06457 pyruvate dehydrogenas 30.6 42 0.00091 22.4 1.8 22 16-37 5-26 (549)
194 COG0647 NagD Predicted sugar p 30.5 87 0.0019 19.4 3.1 30 5-34 18-47 (269)
195 PRK07418 acetolactate synthase 30.5 45 0.00097 22.7 2.0 21 16-36 22-42 (616)
196 PRK08322 acetolactate synthase 30.4 42 0.00092 22.2 1.8 21 16-36 4-24 (547)
197 PRK06456 acetolactate synthase 30.3 43 0.00093 22.4 1.8 22 16-37 5-26 (572)
198 PRK04358 hypothetical protein; 30.1 1E+02 0.0022 18.7 3.2 28 16-44 31-62 (217)
199 PRK07710 acetolactate synthase 29.8 44 0.00096 22.4 1.8 21 16-36 19-39 (571)
200 PRK06965 acetolactate synthase 29.7 46 0.00099 22.5 1.9 21 16-36 24-44 (587)
201 PF06050 HGD-D: 2-hydroxygluta 29.7 68 0.0015 19.7 2.5 29 5-33 207-235 (349)
202 PRK09259 putative oxalyl-CoA d 29.6 45 0.00097 22.3 1.8 23 15-37 12-34 (569)
203 PRK07525 sulfoacetaldehyde ace 29.3 46 0.00099 22.4 1.8 22 16-37 9-30 (588)
204 cd04890 ACT_AK-like_1 ACT doma 29.2 66 0.0014 14.4 2.3 18 16-33 17-34 (62)
205 PRK06546 pyruvate dehydrogenas 28.9 47 0.001 22.4 1.8 22 16-37 6-27 (578)
206 PRK10638 glutaredoxin 3; Provi 28.9 79 0.0017 15.2 2.7 30 1-31 1-30 (83)
207 cd03413 CbiK_C Anaerobic cobal 28.9 73 0.0016 16.5 2.3 25 14-38 42-66 (103)
208 TIGR02720 pyruv_oxi_spxB pyruv 28.8 47 0.001 22.3 1.8 20 17-36 3-22 (575)
209 PRK08611 pyruvate oxidase; Pro 28.6 47 0.001 22.3 1.8 22 16-37 7-28 (576)
210 PRK08978 acetolactate synthase 28.5 48 0.001 22.0 1.8 20 16-35 4-23 (548)
211 PRK08617 acetolactate synthase 28.5 48 0.001 22.1 1.8 22 16-37 8-29 (552)
212 PF07830 PP2C_C: Protein serin 27.9 47 0.001 16.9 1.4 15 4-19 4-18 (81)
213 PF11215 DUF3010: Protein of u 27.8 93 0.002 17.5 2.6 35 9-45 78-112 (138)
214 TIGR03457 sulphoacet_xsc sulfo 27.7 54 0.0012 22.0 2.0 21 16-36 5-25 (579)
215 PRK11269 glyoxylate carboligas 27.4 51 0.0011 22.2 1.8 21 16-36 7-27 (591)
216 PF04181 RPAP2_Rtr1: Rtr1/RPAP 27.3 36 0.00078 16.7 0.9 22 14-35 5-26 (79)
217 COG1587 HemD Uroporphyrinogen- 27.0 1.5E+02 0.0031 17.7 4.7 43 4-46 152-195 (248)
218 PRK06276 acetolactate synthase 27.0 53 0.0012 22.1 1.8 20 16-35 4-23 (586)
219 PF01875 Memo: Memo-like prote 26.7 49 0.0011 20.2 1.5 24 14-37 214-237 (276)
220 PRK05858 hypothetical protein; 26.7 54 0.0012 21.8 1.8 22 16-37 8-29 (542)
221 TIGR00118 acolac_lg acetolacta 26.6 54 0.0012 21.8 1.8 21 16-36 4-24 (558)
222 COG1167 ARO8 Transcriptional r 26.6 46 0.001 21.8 1.5 24 14-37 213-236 (459)
223 PHA01519 hypothetical protein 26.4 49 0.0011 18.0 1.3 18 15-32 61-78 (115)
224 PF00590 TP_methylase: Tetrapy 26.2 1.3E+02 0.0029 16.9 4.9 43 4-46 80-127 (210)
225 KOG4174|consensus 26.1 75 0.0016 19.9 2.2 23 13-35 101-123 (282)
226 PRK07282 acetolactate synthase 25.8 59 0.0013 21.8 1.9 21 16-36 13-33 (566)
227 PRK11639 zinc uptake transcrip 25.7 88 0.0019 17.7 2.4 28 13-42 41-68 (169)
228 PRK08527 acetolactate synthase 25.1 61 0.0013 21.7 1.9 20 16-35 6-25 (563)
229 PF03295 Pox_TAA1: Poxvirus tr 25.1 80 0.0017 15.3 1.8 15 14-28 24-38 (63)
230 KOG1178|consensus 25.1 98 0.0021 23.0 2.9 30 16-45 277-306 (1032)
231 PF06200 tify: tify domain; I 25.1 73 0.0016 13.6 2.4 17 3-23 15-31 (36)
232 PF10765 DUF2591: Protein of u 24.7 76 0.0017 16.4 1.9 17 15-31 57-73 (109)
233 CHL00099 ilvB acetohydroxyacid 24.4 63 0.0014 21.8 1.8 21 16-36 13-33 (585)
234 TIGR03212 uraD_N-term-dom puta 24.3 1.7E+02 0.0037 18.3 3.6 32 15-46 78-117 (297)
235 PLN02470 acetolactate synthase 24.2 64 0.0014 21.8 1.8 22 16-37 16-37 (585)
236 PRK00782 hypothetical protein; 24.2 1.2E+02 0.0026 18.4 2.9 25 14-38 202-226 (267)
237 PF00837 T4_deiodinase: Iodoth 24.1 1.2E+02 0.0025 18.6 2.8 23 5-27 213-237 (237)
238 COG1355 Predicted dioxygenase 24.1 99 0.0021 19.4 2.5 25 14-38 215-239 (279)
239 TIGR03599 YloV DAK2 domain fus 23.9 1.7E+02 0.0036 20.0 3.7 38 5-42 338-375 (530)
240 COG0332 FabH 3-oxoacyl-[acyl-c 23.6 1.2E+02 0.0027 19.3 2.9 33 14-46 265-297 (323)
241 PRK13352 thiamine biosynthesis 23.4 53 0.0011 21.9 1.3 24 10-33 202-225 (431)
242 PRK08266 hypothetical protein; 23.1 68 0.0015 21.3 1.8 22 16-37 7-28 (542)
243 COG4075 Uncharacterized conser 22.8 85 0.0018 16.8 1.8 27 15-41 15-47 (110)
244 cd03414 CbiX_SirB_C Sirohydroc 22.2 96 0.0021 15.9 2.0 25 14-38 45-69 (117)
245 KOG4549|consensus 22.1 1.1E+02 0.0025 17.2 2.3 22 13-34 46-67 (144)
246 PF10262 Rdx: Rdx family; Int 22.0 79 0.0017 15.3 1.6 14 13-26 63-76 (76)
247 PF04016 DUF364: Domain of unk 21.7 1E+02 0.0022 17.1 2.1 21 14-34 96-116 (147)
248 cd00958 DhnA Class I fructose- 21.4 1.7E+02 0.0036 17.1 3.1 28 14-41 21-48 (235)
249 cd03416 CbiX_SirB_N Sirohydroc 21.3 52 0.0011 16.5 0.8 24 14-37 44-67 (101)
250 PF10354 DUF2431: Domain of un 21.2 75 0.0016 18.0 1.5 22 13-34 39-60 (166)
251 TIGR00190 thiC thiamine biosyn 20.6 67 0.0014 21.4 1.3 24 10-33 199-222 (423)
252 cd04912 ACT_AKiii-LysC-EC-like 20.2 1.2E+02 0.0027 14.4 2.2 19 16-34 18-36 (75)
No 1
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.40 E-value=7.1e-13 Score=85.46 Aligned_cols=55 Identities=35% Similarity=0.559 Sum_probs=50.3
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+|+++|+|.|++ +++++|++|+++++|+|+++||.+|+|++.+. .+.+|+|++++
T Consensus 240 at~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~~~~dlssLr~ 294 (528)
T COG0365 240 ATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--GEPYDLSSLRV 294 (528)
T ss_pred CeEEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--cccccchhhee
Confidence 688999999998 99999999999999999999999999999976 46789998765
No 2
>PLN02654 acetate-CoA ligase
Probab=98.97 E-value=1.9e-09 Score=70.64 Aligned_cols=58 Identities=43% Similarity=0.696 Sum_probs=47.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+|+++++|.|.+++++++|++|++++||+++++|++++.|++.+......++++++++
T Consensus 344 ~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~ 401 (666)
T PLN02654 344 ATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRV 401 (666)
T ss_pred ceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeE
Confidence 5788999988888999999999999999999999999999987643234456666543
No 3
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=98.77 E-value=2.9e-08 Score=64.28 Aligned_cols=58 Identities=48% Similarity=0.757 Sum_probs=46.6
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
++++++++.|.+++++.+|++|+++++|+++++|++++.|++.+.......++++++.
T Consensus 305 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~ 362 (625)
T TIGR02188 305 ATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRL 362 (625)
T ss_pred CeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeE
Confidence 5788999888878999999999999999999999999999987543223455655543
No 4
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=98.77 E-value=2.9e-08 Score=64.51 Aligned_cols=58 Identities=36% Similarity=0.597 Sum_probs=46.5
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+++++++|.|.++++..+|++|+++++|+++++|++++.|++.+......+++++++.
T Consensus 301 ~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~ 358 (628)
T TIGR02316 301 AATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHW 358 (628)
T ss_pred ceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeE
Confidence 5788999888778999999999999999999999999999876532223456666543
No 5
>KOG1175|consensus
Probab=98.72 E-value=2.5e-08 Score=65.76 Aligned_cols=54 Identities=39% Similarity=0.650 Sum_probs=44.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD 57 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l 57 (63)
+++++|+|.|+ ++.++|+++++++||+++++|+++|.+++.+......++++++
T Consensus 308 a~~vl~~g~p~--~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sL 361 (626)
T KOG1175|consen 308 ATVVLYEGPPF--DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSL 361 (626)
T ss_pred cEEEEEcCCCC--ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceE
Confidence 68899999885 9999999999999999999999999998876543444554433
No 6
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=98.68 E-value=7.2e-08 Score=62.89 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=45.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++++|.|.+++++.+|++|+++++|+++++|++++.+++.+..+...+++++++
T Consensus 330 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr 386 (655)
T PRK03584 330 ATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALR 386 (655)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheE
Confidence 578899988887899999999999999999999999999987643222335665554
No 7
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=98.68 E-value=6.4e-08 Score=63.38 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=45.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+|+++++|.|.+++++.+|++|++++||+++++|++++.+++.+..+...+++++++.
T Consensus 331 ~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~ 388 (652)
T TIGR01217 331 ATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQC 388 (652)
T ss_pred cEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeE
Confidence 5788999888777999999999999999999999999888765422223456766553
No 8
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=98.59 E-value=1.8e-07 Score=60.65 Aligned_cols=57 Identities=40% Similarity=0.672 Sum_probs=45.2
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++++|.|.+++++.+|++|+++++|+++++|++++.|++.+......+++++++
T Consensus 302 ~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr 358 (629)
T PRK10524 302 MATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLR 358 (629)
T ss_pred CEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhhee
Confidence 467889988877899999999999999999999999999887643212345555544
No 9
>PLN03052 acetate--CoA ligase; Provisional
Probab=98.57 E-value=1.4e-07 Score=62.86 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=43.1
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+|+++|+|. +++..+|+++++++||+++++|++++.|++.+. ...+|+++++.
T Consensus 423 at~vl~~g~---p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~--~~~~dlssLr~ 475 (728)
T PLN03052 423 ATLALYNGS---PLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRC 475 (728)
T ss_pred CEEEEeCCC---CCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC--cccCChhheeE
Confidence 678999986 456789999999999999999999999988753 24567766553
No 10
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=98.51 E-value=4.2e-07 Score=59.11 Aligned_cols=57 Identities=42% Similarity=0.688 Sum_probs=44.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++++|.|.+++++.+|++|+++++|+++++|++++.|++.........++++++
T Consensus 314 ~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr 370 (637)
T PRK00174 314 ATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLR 370 (637)
T ss_pred CEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCcccee
Confidence 567888887777899999999999999999999999999987653212234555544
No 11
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=98.47 E-value=5.6e-07 Score=59.03 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=42.2
Q ss_pred CceEeecCCCCCC--ChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCC---CccccCCccc
Q psy10051 2 NPGRKFEGTPFHP--GNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGP---VQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~--d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~---~~~~dl~~l~ 58 (63)
+++++++|.+..+ .++++|+.|++++||+++++|++++.|++.+... ...+++++++
T Consensus 322 ~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr 383 (647)
T PTZ00237 322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLK 383 (647)
T ss_pred cEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchhe
Confidence 5778888854332 2789999999999999999999999999754310 1345666654
No 12
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=5.1e-07 Score=57.64 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=46.3
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccccccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSNKQQ 62 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~~~~ 62 (63)
+++|+-+. ++|+..+.+|++|+||+...+|.....+++..+ .+..|+++|++.|-
T Consensus 258 G~VVla~~----psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e--~~~~~LsSLrllQV 312 (542)
T COG1021 258 GTVVLAPD----PSPELCFPLIERHGVTVTALVPPLASLWLQAAE--WERADLSSLRLLQV 312 (542)
T ss_pred cEEEECCC----CCHHHHHHHHHHhccceEEeccHHHHHHHHhhh--cccCCchheeEEee
Confidence 34555444 699999999999999999999999999998765 46789999999984
No 13
>KOG1176|consensus
Probab=98.39 E-value=8.6e-07 Score=57.85 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=38.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
|+++.+++.|++|+||+++++|+++.+|.+.+. ...+++++++.
T Consensus 260 f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~--~~~~~l~sl~~ 303 (537)
T KOG1176|consen 260 FDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI--VKKYDLSSLRS 303 (537)
T ss_pred CCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc--cCcccCCccEE
Confidence 799999999999999999999999999999874 45688887654
No 14
>KOG1177|consensus
Probab=98.30 E-value=1.1e-06 Score=56.96 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=40.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD 57 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l 57 (63)
+|+|+.. |. ||+...++.|+++++|.+++.|||+..|++.+. ..+++++++
T Consensus 302 at~Vfp~--~~-f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~--~~~~~~s~l 352 (596)
T KOG1177|consen 302 ATIVFPA--PS-FDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQ--KQQVDLSSL 352 (596)
T ss_pred cEEEeeC--CC-CChHHHHHHHHhhceEEEecChHHHHHHhcchh--hccCchhhh
Confidence 3444433 33 799999999999999999999999999998765 456777664
No 15
>PLN03051 acyl-activating enzyme; Provisional
Probab=98.20 E-value=4e-06 Score=53.28 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=38.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
++++++++. ++++.+|+.|+++++|+++++|++++.|++.+.......++++++
T Consensus 186 ~t~v~~~~~---~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr 239 (499)
T PLN03051 186 ATLALYGGA---PLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLR 239 (499)
T ss_pred CEEEecCCC---CCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhhe
Confidence 456666643 588999999999999999999999999887542001234555544
No 16
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=97.92 E-value=4.4e-05 Score=49.20 Aligned_cols=53 Identities=38% Similarity=0.536 Sum_probs=38.6
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD 57 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l 57 (63)
+++++.++. ++++.+++.|+++++|+++++|++++.|.+.+.......+++++
T Consensus 273 ~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l 325 (570)
T PRK04319 273 ATNVIDGGR---FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSL 325 (570)
T ss_pred ceEEEECCC---CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccc
Confidence 345555442 79999999999999999999999999998764321223445444
No 17
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.89 E-value=3.1e-05 Score=53.33 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=30.0
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+|++.+++.|++++||+++++|++++.|++.+
T Consensus 681 ~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~ 712 (994)
T PRK07868 681 LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDP 712 (994)
T ss_pred CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc
Confidence 79999999999999999999999999998764
No 18
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.83 E-value=6.7e-05 Score=47.40 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=39.7
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
++++.++ ++++.+++.++++++|.++++|+++..+++.+....+.+|++++++
T Consensus 214 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~ 266 (502)
T PRK08276 214 TVVVMEK----FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRV 266 (502)
T ss_pred eEEEcCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceE
Confidence 4455544 7999999999999999999999999998876543223455655443
No 19
>PLN02574 4-coumarate--CoA ligase-like
Probab=97.78 E-value=6.2e-05 Score=48.46 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=33.7
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.++ ++++.+++.|+++++|.++++|++++.|.+.+
T Consensus 272 ~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 310 (560)
T PLN02574 272 TIVVMRR----FDASDMVKVIDRFKVTHFPVVPPILMALTKKA 310 (560)
T ss_pred EEEEecC----CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCc
Confidence 4455544 79999999999999999999999999998764
No 20
>PRK07788 acyl-CoA synthetase; Validated
Probab=97.76 E-value=8.4e-05 Score=47.60 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=30.4
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.+++.++++++|+++++|++++.+++...
T Consensus 282 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 314 (549)
T PRK07788 282 FDPEATLEDIAKHKATALVVVPVMLSRILDLGP 314 (549)
T ss_pred CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcc
Confidence 799999999999999999999999999887643
No 21
>PRK13382 acyl-CoA synthetase; Provisional
Probab=97.66 E-value=0.00014 Score=46.67 Aligned_cols=32 Identities=6% Similarity=0.211 Sum_probs=29.7
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
|+++.+|+.|+++++|.+.++|++++.|++..
T Consensus 271 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 302 (537)
T PRK13382 271 FDPEATLDLIDRHRATGLAVVPVMFDRIMDLP 302 (537)
T ss_pred cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCC
Confidence 79999999999999999999999999988754
No 22
>PRK13390 acyl-CoA synthetase; Provisional
Probab=97.66 E-value=0.00013 Score=46.09 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=32.7
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.++ ++++.+|+.|+++++|++.++|+++..+++..
T Consensus 222 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 260 (501)
T PRK13390 222 TVVLAKR----FDAQATLGHVERYRITVTQMVPTMFVRLLKLD 260 (501)
T ss_pred eEEEcCC----cCHHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence 4455544 69999999999999999999999998887653
No 23
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.63 E-value=0.00017 Score=46.61 Aligned_cols=42 Identities=26% Similarity=0.330 Sum_probs=34.9
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++|+.++.+ |+++.++..+.++++|+++++|+++..|++.+.
T Consensus 242 ~~v~~~~~~--f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~ 283 (534)
T COG0318 242 TLVLLSPEP--FDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPE 283 (534)
T ss_pred EEEeCCCCC--cCHHHHHHHHHHhcceEEecchHHHHHHHhCCc
Confidence 455554322 799999999999999999999999999888765
No 24
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=97.63 E-value=0.00013 Score=47.07 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=32.9
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+. +++..+|+.|+++++|+++++|+++..|++..
T Consensus 240 ~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 278 (563)
T PLN02860 240 CHVLLPK----FDAKAALQAIKQHNVTSMITVPAMMADLISLT 278 (563)
T ss_pred eEEecCC----CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhh
Confidence 4455543 79999999999999999999999999888654
No 25
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=97.62 E-value=0.00017 Score=46.40 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.|+++++|+++++|++++.|++.+
T Consensus 260 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 291 (539)
T PRK06334 260 LYPKKIVEMIDEAKVTFLGSTPVFFDYILKTA 291 (539)
T ss_pred CCHHHHHHHHHHhCCcEEEecHHHHHHHHHhh
Confidence 69999999999999999999999999988754
No 26
>PRK06188 acyl-CoA synthetase; Validated
Probab=97.62 E-value=0.00021 Score=45.43 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=34.5
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
+++++.++ ++++.+++.++++++|+++++|++++.+++.+.
T Consensus 234 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 274 (524)
T PRK06188 234 GTVIVLAK----FDPAEVLRAIEEQRITATFLVPTMIYALLDHPD 274 (524)
T ss_pred CEEEEcCC----CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcC
Confidence 34555554 699999999999999999999999999887654
No 27
>PLN02246 4-coumarate--CoA ligase
Probab=97.61 E-value=0.00019 Score=45.85 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=33.8
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.++ ++++.+|+.|+++++|++.++|+++..|.+..
T Consensus 251 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 290 (537)
T PLN02246 251 AAILIMPK----FEIGALLELIQRHKVTIAPFVPPIVLAIAKSP 290 (537)
T ss_pred CEEEEeCC----CCHHHHHHHHHHhCceEEEcchHHHHHHhcCc
Confidence 34555654 69999999999999999999999999888754
No 28
>PRK06839 acyl-CoA synthetase; Validated
Probab=97.61 E-value=0.00023 Score=44.77 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.+++.++++++|.+.++|++++.+++...
T Consensus 225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 257 (496)
T PRK06839 225 FEPTKALSMIEKHKVTVVMGVPTIHQALINCSK 257 (496)
T ss_pred CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc
Confidence 799999999999999999999999999987643
No 29
>PRK07470 acyl-CoA synthetase; Validated
Probab=97.55 E-value=0.0003 Score=44.77 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=37.9
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+.+++++.. ++++.+|+.|+++++|.+.++|++++.+.+.+. ....++++++
T Consensus 232 ~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 283 (528)
T PRK07470 232 ATVLLPSER--FDPAEVWALVERHRVTNLFTVPTILKMLVEHPA--VDRYDHSSLR 283 (528)
T ss_pred eEEEecccC--cCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC--cCCCCCcceE
Confidence 344554322 689999999999999999999999999887643 2334454443
No 30
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.52 E-value=0.00029 Score=45.39 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=33.7
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.++ ++++.+|+.++++++|.+.++|++++.|++...
T Consensus 290 ~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 329 (573)
T PRK05605 290 ELVLLPA----PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAE 329 (573)
T ss_pred EEEEeCC----CCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcc
Confidence 4455544 699999999999999999999999999887643
No 31
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=97.52 E-value=0.0003 Score=44.64 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=33.8
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD 57 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l 57 (63)
++++.+++.++++++|.+.++|+++..+++.+......++++++
T Consensus 230 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l 273 (509)
T PRK12406 230 FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSL 273 (509)
T ss_pred CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCce
Confidence 68999999999999999999999999888654321223444443
No 32
>PRK08316 acyl-CoA synthetase; Validated
Probab=97.50 E-value=0.0004 Score=43.88 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=34.1
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++++++ ++++.+|+.++++++|.+.++|+++..+.+...
T Consensus 239 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 279 (523)
T PRK08316 239 ATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD 279 (523)
T ss_pred ceEEEecC----CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc
Confidence 34555554 699999999999999999999999998887643
No 33
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.47 E-value=0.00046 Score=44.29 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.+|++++++++|.+.++|+++..+++...
T Consensus 254 ~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~ 286 (539)
T PRK07008 254 LDGKSLYELIEAERVTFSAGVPTVWLGLLNHMR 286 (539)
T ss_pred cCHHHHHHHHHHcCCEEEEechHHHHHHHhccc
Confidence 699999999999999999999999998887643
No 34
>PRK13391 acyl-CoA synthetase; Provisional
Probab=97.46 E-value=0.00042 Score=44.02 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=33.4
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.+. ++++.+++.++++++|++.++|++++.+.+..
T Consensus 226 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 265 (511)
T PRK13391 226 GTVIVMEH----FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLP 265 (511)
T ss_pred ceEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCc
Confidence 34555554 79999999999999999999999998887653
No 35
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.44 E-value=0.00034 Score=44.63 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=33.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++++++ +++..++++++++++|++.++|++++.+++.+
T Consensus 258 ~~i~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~ 297 (546)
T PRK08314 258 ATVVLMPR----WDREAAARLIERYRVTHWTNIPTMVVDFLASP 297 (546)
T ss_pred CeEEecCC----CCHHHHHHHHHHhcCceecccHHHHHHHHhCC
Confidence 35566654 69999999999999999999999999888654
No 36
>PRK06145 acyl-CoA synthetase; Validated
Probab=97.43 E-value=0.00049 Score=43.43 Aligned_cols=33 Identities=9% Similarity=0.238 Sum_probs=30.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
+++..+++.++++++|.+.++|++++.+++...
T Consensus 225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~ 257 (497)
T PRK06145 225 FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPD 257 (497)
T ss_pred CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCC
Confidence 699999999999999999999999999887643
No 37
>PRK09274 peptide synthase; Provisional
Probab=97.43 E-value=0.00025 Score=45.46 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 13 HPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 13 ~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
.++++.+++.|+++++|+++++|++++.|.+... ....++++++
T Consensus 248 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~~lr 291 (552)
T PRK09274 248 TVDPAKLFAAIERYGVTNLFGSPALLERLGRYGE--ANGIKLPSLR 291 (552)
T ss_pred ccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhh--hcCCCCchhh
Confidence 3689999999999999999999999999887543 1234555443
No 38
>PLN03102 acyl-activating enzyme; Provisional
Probab=97.40 E-value=0.00057 Score=44.41 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=33.6
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++++++ ++++.+|+.|+++++|+++++|+++..|.+..
T Consensus 253 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (579)
T PLN03102 253 GTSVCMRH----VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGN 292 (579)
T ss_pred CcEEeecc----CChHHHHHHHHHcCCeEEEeChHHHHHHHhCc
Confidence 34555554 68899999999999999999999999998754
No 39
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.37 E-value=0.00061 Score=46.85 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=34.1
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
++++.+++.++++++|++.++|++++.+.+.+. ....++++++
T Consensus 859 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 901 (1146)
T PRK08633 859 TDALGIAKLVAKHRATILLGTPTFLRLYLRNKK--LHPLMFASLR 901 (1146)
T ss_pred CCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc--cCcccCCCee
Confidence 699999999999999999999999998887543 2334555443
No 40
>PRK05857 acyl-CoA synthetase; Validated
Probab=97.34 E-value=0.00074 Score=43.39 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=29.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++..++++|+++++|+++++|++++.+.+..
T Consensus 247 ~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~ 278 (540)
T PRK05857 247 ENTTSLLEILTTNAVATTCLVPTLLSKLVSEL 278 (540)
T ss_pred CChhHHHHHHHhcCcceEEeChHHHHHHHhcc
Confidence 58899999999999999999999999888754
No 41
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=97.33 E-value=0.00053 Score=44.00 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=32.9
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.++ +++..+|+.++++++|.+.++|++++.+++.+
T Consensus 255 ~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 293 (546)
T PLN02330 255 KVVVMSR----FELRTFLNALITQEVSFAPIVPPIILNLVKNP 293 (546)
T ss_pred EEEEecc----cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCc
Confidence 3444544 79999999999999999999999999988754
No 42
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=97.29 E-value=0.00075 Score=43.22 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=29.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.|+++++|++.++|++++.+.+.+
T Consensus 273 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 304 (541)
T TIGR03205 273 FDVAAVFRDIEEKRATVFPGVPTMWIALANDP 304 (541)
T ss_pred CCHHHHHHHHHHcCCeEeechHHHHHHHHhCc
Confidence 69999999999999999999999999887653
No 43
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.26 E-value=0.00078 Score=43.34 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=29.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.|+++++|.+.++|++++.+++.+
T Consensus 284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 315 (563)
T PRK06710 284 FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSP 315 (563)
T ss_pred CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCC
Confidence 69999999999999999999999999888754
No 44
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.26 E-value=0.001 Score=41.88 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.5
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.++ ++++.+++.++++++|.++++|++++.|.+...
T Consensus 235 ~~v~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~ 274 (521)
T PRK06187 235 KQVIPRR----FDPENLLDLIETERVTFFFAVPTIWQMLLKAPR 274 (521)
T ss_pred EEEecCC----CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcC
Confidence 4445544 599999999999999999999999999887654
No 45
>PRK07638 acyl-CoA synthetase; Validated
Probab=97.25 E-value=0.00066 Score=42.86 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=33.3
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.++ ++++.+|+.|+++++|+++++|+++..|.+.
T Consensus 210 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 248 (487)
T PRK07638 210 QTVHLMRK----FIPNQVLDKLETENISVMYTVPTMLESLYKE 248 (487)
T ss_pred cEEEEcCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC
Confidence 34555544 7999999999999999999999999998875
No 46
>PRK05852 acyl-CoA synthetase; Validated
Probab=97.20 E-value=0.0013 Score=42.14 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=30.0
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
+++..+|+.|+++++|.++++|+++..+++...
T Consensus 254 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 286 (534)
T PRK05852 254 FSAHTFWDDIKAVGATWYTAVPTIHQILLERAA 286 (534)
T ss_pred cCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcc
Confidence 689999999999999999999999999987643
No 47
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=97.20 E-value=0.0012 Score=42.35 Aligned_cols=39 Identities=8% Similarity=-0.088 Sum_probs=32.5
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+. ++++.+++.++++++|.+.++|++++.+.+..
T Consensus 266 ~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~ 304 (547)
T PRK13295 266 TAVLQDI----WDPARAAELIRTEGVTFTMASTPFLTDLTRAV 304 (547)
T ss_pred eEEeCCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc
Confidence 4445443 69999999999999999999999998888654
No 48
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=97.16 E-value=0.0013 Score=41.77 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=33.5
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.++ ++++.+|+.|+++++|++.++|++++.++..+.
T Consensus 242 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 281 (517)
T PRK08008 242 TFVLLEK----YSARAFWGQVCKYRATITECIPMMIRTLMVQPP 281 (517)
T ss_pred EEEEccc----cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCC
Confidence 4555554 799999999999999999999999998876543
No 49
>PRK06164 acyl-CoA synthetase; Validated
Probab=97.14 E-value=0.0013 Score=42.06 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=29.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++..+++.|+++++|+++++|+++..+.+.
T Consensus 256 ~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~ 286 (540)
T PRK06164 256 FDAARTARALRRHRVTHTFGNDEMLRRILDT 286 (540)
T ss_pred CCHHHHHHHHHHhCCeeecCCHHHHHHHHHh
Confidence 6999999999999999999999999988876
No 50
>PLN02479 acetate-CoA ligase
Probab=97.14 E-value=0.0015 Score=42.24 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=29.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+|+.++++++|+++++|+++..|.+..
T Consensus 270 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~ 301 (567)
T PLN02479 270 VTAKAIYSAIANYGVTHFCAAPVVLNTIVNAP 301 (567)
T ss_pred CCHHHHHHHHHHcCCeEEEecHHHHHHHHhhh
Confidence 69999999999999999999999999888653
No 51
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.11 E-value=0.0018 Score=40.85 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=30.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.+++.|+++++|++.++|+++..+.+...
T Consensus 242 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 274 (513)
T PRK07656 242 FDPDEVFRLIETERITVLPGPPTMYNSLLQHPD 274 (513)
T ss_pred CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCC
Confidence 689999999999999999999999999987654
No 52
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=97.09 E-value=0.002 Score=41.20 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=29.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++..+|+.++++++|+++++|+++..+.+..
T Consensus 260 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 291 (527)
T TIGR02275 260 PSPTDCFPLIERHKVTVTALVPPAVALWMQAA 291 (527)
T ss_pred CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCc
Confidence 68999999999999999999999998887654
No 53
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=97.08 E-value=0.0019 Score=42.00 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=29.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++..+|+.++++++|++.++|++++.+.+..
T Consensus 275 ~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~ 306 (600)
T PRK08279 275 FSASRFWDDVRRYRATAFQYIGELCRYLLNQP 306 (600)
T ss_pred CCHHHHHHHHHHhcceEEeehHHHHHHHHhCC
Confidence 79999999999999999999999999888754
No 54
>PRK06178 acyl-CoA synthetase; Validated
Probab=97.08 E-value=0.0022 Score=41.35 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=33.8
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.++ ++++.+|+.|+++++|.++++|+++..+++.+
T Consensus 278 ~~~~l~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~ 317 (567)
T PRK06178 278 ATLVLLAR----WDAVAFMAAVERYRVTRTVMLVDNAVELMDHP 317 (567)
T ss_pred ceEEEeCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCC
Confidence 34566654 79999999999999999999999998888754
No 55
>PRK08315 AMP-binding domain protein; Validated
Probab=97.05 E-value=0.0022 Score=41.07 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=29.4
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++..+|+.++++++|.+.++|+++..++..+
T Consensus 276 ~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~ 307 (559)
T PRK08315 276 FDPLATLAAVEEERCTALYGVPTMFIAELDHP 307 (559)
T ss_pred CCHHHHHHHHHHcCCeEEecchHHHHHHHhCc
Confidence 69999999999999999999999998888754
No 56
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=97.05 E-value=0.0018 Score=40.89 Aligned_cols=39 Identities=10% Similarity=-0.018 Sum_probs=33.2
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.++ ++++.+++.++++++|.+.++|+++..+.+.
T Consensus 228 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 266 (515)
T TIGR03098 228 ATVVLHDY----LLPRDVLKALEKHGITGLAAVPPLWAQLAQL 266 (515)
T ss_pred CEEEEcCC----CCHHHHHHHHHHcCCceEecChHHHHHHHhc
Confidence 35555554 6999999999999999999999999988865
No 57
>PRK12583 acyl-CoA synthetase; Provisional
Probab=97.04 E-value=0.0021 Score=41.12 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=28.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.++++++|+++++|+++..++...
T Consensus 278 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 309 (558)
T PRK12583 278 FDPLATLQAVEEERCTALYGVPTMFIAELDHP 309 (558)
T ss_pred CCHHHHHHHHHHcCCeEEeccHHHHHHHHccc
Confidence 68999999999999999999999998887654
No 58
>PRK13383 acyl-CoA synthetase; Provisional
Probab=97.02 E-value=0.0024 Score=40.76 Aligned_cols=32 Identities=6% Similarity=0.168 Sum_probs=29.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+|+.++++++|.+.++|++++.+.+..
T Consensus 251 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 282 (516)
T PRK13383 251 FDAEAALAQASLHRADAFTAVPVVLARILELP 282 (516)
T ss_pred CCHHHHHHHHHHhCCcEEEecHHHHHHHHhcc
Confidence 79999999999999999999999999888654
No 59
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=97.01 E-value=0.0016 Score=40.90 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=33.5
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++++++ +++..+++.++++++|++.++|+++..|.+.
T Consensus 208 ~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 246 (483)
T PRK03640 208 MRVVLVEK----FDAEKINKLLQTGGVTIISVVSTMLQRLLER 246 (483)
T ss_pred CEEEecCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhC
Confidence 45666665 6999999999999999999999999988754
No 60
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=97.01 E-value=0.0025 Score=41.11 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=33.2
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.+. ++++.+|+.|+++++|.+.++|+++..|.+.+.
T Consensus 248 ~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~ 287 (542)
T PRK06155 248 TYVLEPR----FSASGFWPAVRRHGATVTYLLGAMVSILLSQPA 287 (542)
T ss_pred eEEeeCC----CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcC
Confidence 4445443 689999999999999999999999998887643
No 61
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=96.94 E-value=0.00082 Score=41.44 Aligned_cols=42 Identities=10% Similarity=0.205 Sum_probs=33.0
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.++.+. ++++.+++.|+++++|+++++|+++..+++.
T Consensus 223 ~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~ 264 (417)
T PF00501_consen 223 ATLVLPSPFDL-FDPESLLELISRYKPTILFAVPSMLEALLQS 264 (417)
T ss_dssp SEEEEESSHHH-HHHHHHHHHHHHHTESEEEEEHHHHHHHHHH
T ss_pred ccccccccccc-cccccchhccccccccccccccccccccccc
Confidence 45666665321 2357789999999999999999999999874
No 62
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=96.93 E-value=0.003 Score=40.51 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=28.4
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++.+++.++++++|++.++|+++..+...
T Consensus 271 ~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~ 301 (538)
T TIGR03208 271 WNPARAAELIRETGVTFTMASTPFLTDLCRA 301 (538)
T ss_pred cCHHHHHHHHHHhCCeEEecCHHHHHHHHhc
Confidence 7999999999999999999999999877754
No 63
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.92 E-value=0.0029 Score=40.87 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=29.1
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.|+++++|.++++|+++..+.+..
T Consensus 287 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 318 (562)
T PRK05677 287 RDLPAMVKELGKWKFSGFVGLNTLFVALCNNE 318 (562)
T ss_pred ccHHHHHHHHHHcCceEEecHHHHHHHHHhCc
Confidence 58999999999999999999999999888654
No 64
>PLN02614 long-chain acyl-CoA synthetase
Probab=96.91 E-value=0.0023 Score=42.57 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=27.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++++.+++.|+++++|+++++|+++..+.+
T Consensus 302 ~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 331 (666)
T PLN02614 302 GDVKLLIEDLGELKPTIFCAVPRVLDRVYS 331 (666)
T ss_pred CCHHHHHHHHHHhCCeEEEecHHHHHHHHH
Confidence 489999999999999999999999987764
No 65
>PRK07529 AMP-binding domain protein; Validated
Probab=96.90 E-value=0.0042 Score=40.92 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=31.7
Q ss_pred hhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
.+.+|++++++++|.+.++|+++..|++.+. ...++++++
T Consensus 297 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~~slr 336 (632)
T PRK07529 297 IANFWKIVERYRINFLSGVPTVYAALLQVPV---DGHDISSLR 336 (632)
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---cCCCccceE
Confidence 3689999999999999999999999987653 234555544
No 66
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=96.88 E-value=0.0026 Score=40.88 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=29.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+|+.++++++|.++++|++++.+.+..
T Consensus 255 ~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~ 286 (542)
T PRK06018 255 LDGASVYELLDTEKVTFTAGVPTVWLMLLQYM 286 (542)
T ss_pred CCHHHHHHHHHhcCCceeecCcHHHHHHHhcc
Confidence 68999999999999999999999999887654
No 67
>PRK07867 acyl-CoA synthetase; Validated
Probab=96.87 E-value=0.004 Score=40.10 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=33.1
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.++ ++++.+++.++++++|++.++|+.++.+++.+.
T Consensus 221 ~~~~~~~----~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~ 260 (529)
T PRK07867 221 SIALRRK----FSASGFLPDVRRYGATYANYVGKPLSYVLATPE 260 (529)
T ss_pred eEEecCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC
Confidence 3445544 799999999999999999999999998887643
No 68
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=96.86 E-value=0.0039 Score=40.29 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=34.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++..+++.|+++++|++.++|+++..+++.+. ....++++++
T Consensus 294 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr 336 (562)
T PRK12492 294 RDIPGFIKELGKWRFSALLGLNTLFVALMDHPG--FKDLDFSALK 336 (562)
T ss_pred cCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC--ccccccccee
Confidence 589999999999999999999999998887653 2334555443
No 69
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=96.82 E-value=0.0012 Score=38.79 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.2
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcce
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVN 29 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT 29 (63)
+|+|++++ ||++++|+.|++++||
T Consensus 204 ~t~v~~~r----Fd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 204 GSLVLVTH----PDPARLDQIAETERVT 227 (227)
T ss_pred ceEEEecC----CCHHHHHHHHHhhcCC
Confidence 57788865 8999999999999997
No 70
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=96.81 E-value=0.0034 Score=40.38 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=33.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD 57 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l 57 (63)
+++..+++.|+++++|++.++|+++..+.+.+. ....+++++
T Consensus 290 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~l~~l 331 (560)
T PRK08751 290 RDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG--FDQIDFSSL 331 (560)
T ss_pred CCHHHHHHHHHhcceeEecChHHHHHHHHcCcC--cCCcchhhh
Confidence 588999999999999999999999998887643 233455443
No 71
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=96.78 E-value=0.0051 Score=39.07 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=32.3
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++++. +++..+|+.|+++++|.+.++|+++..+++..
T Consensus 231 ~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~ 270 (508)
T TIGR02262 231 TTVLMGER---PTPDAVFDRLRRHQPTIFYGVPTLYAAMLADP 270 (508)
T ss_pred eEEEeCCC---CCHHHHHHHHHHHCCcEEecchHHHHHHhcCc
Confidence 34555542 58999999999999999999999998777643
No 72
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.71 E-value=0.0062 Score=39.15 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=33.0
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++++... ++++.+|+.|+++++|.++++|+++..+....
T Consensus 243 ~~v~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~ 283 (542)
T PRK07786 243 PTVIYPLGA--FDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQ 283 (542)
T ss_pred EEEEccCCC--cCHHHHHHHHHHcCCeEEEehHHHHHHHHhCc
Confidence 445544212 69999999999999999999999999888653
No 73
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=96.69 E-value=0.0042 Score=41.25 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=27.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++++.+++.|+++++|+++++|+++..|.+
T Consensus 299 ~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 328 (660)
T PLN02861 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYT 328 (660)
T ss_pred CCHHHHHHHHHHhCCcEEeechHHHHHHHH
Confidence 489999999999999999999999987764
No 74
>PRK08162 acyl-CoA synthetase; Validated
Probab=96.66 E-value=0.0071 Score=38.74 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=30.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.+++.++++++|++.++|++++.|.+.+.
T Consensus 257 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 289 (545)
T PRK08162 257 VDPKLIFDLIREHGVTHYCGAPIVLSALINAPA 289 (545)
T ss_pred CCHHHHHHHHHHcCCeEEEechHHHHHHHhCcc
Confidence 699999999999999999999999999887643
No 75
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=96.63 E-value=0.0044 Score=42.10 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=27.1
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++..+++.|+++++|+++++|+++..|.+
T Consensus 381 ~~~~l~~di~~~~pT~~~~VP~v~~~i~~ 409 (746)
T PTZ00342 381 DINYFSKDIYNSKGNILAGVPKVFNRIYT 409 (746)
T ss_pred CHHHHHHHHHHhCCcEEEchHHHHHHHHH
Confidence 88999999999999999999999988865
No 76
>PRK08308 acyl-CoA synthetase; Validated
Probab=96.62 E-value=0.0064 Score=37.86 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=32.9
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.++ ++++.+++.++++++|.++++|+++..+.+..
T Consensus 170 ~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~ 208 (414)
T PRK08308 170 KPVIITN----KNPKFALNILRNTPQHILYAVPLMLHILGRLL 208 (414)
T ss_pred EEEecCC----CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcC
Confidence 4555554 68999999999999999999999999887653
No 77
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=96.60 E-value=0.0077 Score=38.79 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=29.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
.++..+|+.++++++|.+.++|++++.++....
T Consensus 288 ~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~ 320 (557)
T PRK07059 288 RDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD 320 (557)
T ss_pred cCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC
Confidence 488999999999999999999999998887643
No 78
>PLN02736 long-chain acyl-CoA synthetase
Probab=96.59 E-value=0.0049 Score=40.68 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=26.5
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++..+++.|+++++|+++++|+++..+.+
T Consensus 296 ~~~~~~~~i~~~~~t~~~~vP~~~~~l~~ 324 (651)
T PLN02736 296 DNLKLMDDLAALRPTIFCSVPRLYNRIYD 324 (651)
T ss_pred CHHHHHHHHHHhCCcEEecchHHHHHHHH
Confidence 78899999999999999999999987764
No 79
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=96.59 E-value=0.0077 Score=38.71 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=28.6
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++..++++++++++|++.++|++++.+.+.
T Consensus 259 ~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~ 289 (536)
T PRK10946 259 PSATLCFPLIEKHQVNVTALVPPAVSLWLQA 289 (536)
T ss_pred CCHHHHHHHHHHhCCcEEEeChHHHHHHHhh
Confidence 6899999999999999999999999888764
No 80
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=96.49 E-value=0.0078 Score=40.22 Aligned_cols=40 Identities=8% Similarity=0.070 Sum_probs=31.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++++++ + +++..+++.++++++|+++++|+++..+.+.
T Consensus 433 ~~vv~~~~-~--~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 472 (718)
T PRK08043 433 AEVFLYPS-P--LHYRIVPELVYDRNCTVLFGTSTFLGNYARF 472 (718)
T ss_pred CEEEEeCC-c--ccHHHHHHHHHhcCCeEEEchHHHHHHhhhh
Confidence 45566654 2 4778899999999999999999999877654
No 81
>PRK13388 acyl-CoA synthetase; Provisional
Probab=96.44 E-value=0.011 Score=38.08 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=29.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++..+|+.|+++++|++..+|+++..+++.+
T Consensus 226 ~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~ 257 (540)
T PRK13388 226 FSASGFLDDVRRYGATYFNYVGKPLAYILATP 257 (540)
T ss_pred CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCC
Confidence 68999999999999999999999999888654
No 82
>PRK09088 acyl-CoA synthetase; Validated
Probab=96.44 E-value=0.011 Score=37.39 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=31.2
Q ss_pred ceEeecCCCCCCChhHHHHHHh--hhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVE--KYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~--~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.++ +++...+..+. ++++|.++++|+++..+.+.+
T Consensus 204 ~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~ 244 (488)
T PRK09088 204 SILVSNG----FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQP 244 (488)
T ss_pred EEEEcCC----CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCc
Confidence 4445544 68899999886 489999999999999888654
No 83
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=96.43 E-value=0.0072 Score=38.18 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=32.8
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++++++.. ..++..+|+.+.++++|.+.++|+++..++..
T Consensus 208 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~ 249 (502)
T TIGR01734 208 GTLHCLDKDI-TNNFKLLFEELPKTGLNVWVSTPSFVDMCLLD 249 (502)
T ss_pred CEEEEcCHHH-hcCHHHHHHHHHHcCCeEEEEChhHHHHHHhc
Confidence 4555665421 24889999999999999999999999877754
No 84
>PRK07787 acyl-CoA synthetase; Validated
Probab=96.43 E-value=0.0098 Score=37.58 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=28.1
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+|+.|+ +++|.+.++|+++..+.+..
T Consensus 204 ~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~ 234 (471)
T PRK07787 204 PTPEAYAQALS-EGGTLYFGVPTVWSRIAADP 234 (471)
T ss_pred CCHHHHHHHHh-hCceEEEcchHHHHHHHhCc
Confidence 69999999999 99999999999998888643
No 85
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=96.41 E-value=0.008 Score=39.42 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=30.4
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.++.+.-.+...+++.++++++|+++++|+++..|++.
T Consensus 279 ~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~ 321 (614)
T PRK08180 279 GTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPA 321 (614)
T ss_pred CEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHH
Confidence 3455555421111335778899999999999999999888763
No 86
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=96.41 E-value=0.009 Score=37.54 Aligned_cols=31 Identities=10% Similarity=0.308 Sum_probs=27.7
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
.+++.+++.|+++++|++++.|+++..|.+.
T Consensus 154 ~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~ 184 (422)
T TIGR02155 154 GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEE 184 (422)
T ss_pred CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHH
Confidence 4679999999999999999999999887754
No 87
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.41 E-value=0.011 Score=41.58 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=33.1
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.+. ....+++.+++.|+++++|++.++|+++..+++.
T Consensus 665 ~~l~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~ 706 (1296)
T PRK10252 665 AKLVMAEP-EAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVAS 706 (1296)
T ss_pred CEEEECCh-hccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence 34555442 1225899999999999999999999999988765
No 88
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.40 E-value=0.012 Score=38.01 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=29.1
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
.++..+++.++++++|.++++|++++.|++..
T Consensus 286 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 317 (560)
T PRK08974 286 RDIPGFVKELKKYPFTAITGVNTLFNALLNNE 317 (560)
T ss_pred cCHHHHHHHHHhcCcceEcCcHHHHHHHHhCc
Confidence 48899999999999999999999999988764
No 89
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=96.38 E-value=0.012 Score=37.80 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=29.7
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++.+. ++++.+++.|+++++|.+.+.|+++..+++.
T Consensus 256 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~ 293 (547)
T PRK06087 256 RSVLLDI----FTPDACLALLEQQRCTCMLGATPFIYDLLNL 293 (547)
T ss_pred EEEecCC----CCHHHHHHHHHHcCCCEEeccHHHHHHHHhc
Confidence 4455544 6999999999999999998887777666654
No 90
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=96.09 E-value=0.016 Score=36.51 Aligned_cols=41 Identities=5% Similarity=0.096 Sum_probs=32.1
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++++. ..+++..+++.++++++|++..+|++++.+...
T Consensus 211 ~~v~~~~~-~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~ 251 (503)
T PRK04813 211 TLVALPKD-MTANFKQLFETLPQLPINVWVSTPSFADMCLLD 251 (503)
T ss_pred EEEEcChh-hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHh
Confidence 45556542 225899999999999999999999999876644
No 91
>PRK06060 acyl-CoA synthetase; Validated
Probab=96.07 E-value=0.021 Score=38.05 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=28.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++..++++++++++|+++++|+++..+.+.
T Consensus 223 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~ 253 (705)
T PRK06060 223 VTPEAAAILSARFGPSVLYGVPNFFARVIDS 253 (705)
T ss_pred CCHHHHHHHHHhcCCeEEeeHHHHHHHHHHh
Confidence 5888999999999999999999999888764
No 92
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.04 E-value=0.015 Score=37.74 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=28.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++.+++.|+++++|.+.++|+++..++..
T Consensus 259 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (576)
T PRK05620 259 LSAPTLAKIIATAMPRVAHGVPTLWIQLMVH 289 (576)
T ss_pred CCHHHHHHHHHHhcCceeeecCHHHHHHHHH
Confidence 5899999999999999999999999877754
No 93
>PRK12316 peptide synthase; Provisional
Probab=95.98 E-value=0.022 Score=45.38 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=34.5
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.+.. ..++++.+++.|++++||+++++|++++.|++.+
T Consensus 722 ~~l~i~~~~-~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~ 764 (5163)
T PRK12316 722 ARLVVAAPG-DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE 764 (5163)
T ss_pred CEEEECCcc-ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc
Confidence 455665432 2269999999999999999999999999998653
No 94
>PRK12316 peptide synthase; Provisional
Probab=95.93 E-value=0.023 Score=45.23 Aligned_cols=42 Identities=10% Similarity=0.153 Sum_probs=34.1
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.++. . ++++.+++.|+++++|+++++|++++.|.+..
T Consensus 4761 ~~lvi~~~~-~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~ 4802 (5163)
T PRK12316 4761 ASVVIRDDS-L-WDPERLYAEIHEHRVTVLVFPPVYLQQLAEHA 4802 (5163)
T ss_pred CEEEEcCcc-c-CCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhh
Confidence 455555542 2 38999999999999999999999999988764
No 95
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=95.93 E-value=0.031 Score=39.78 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=28.0
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
.++..+++.|+++++|+++++|++++.|...
T Consensus 493 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 523 (1389)
T TIGR03443 493 GTPGRLAEWMAKYGATVTHLTPAMGQLLSAQ 523 (1389)
T ss_pred cCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence 4788999999999999999999999988754
No 96
>PRK12467 peptide synthase; Provisional
Probab=95.75 E-value=0.031 Score=43.76 Aligned_cols=42 Identities=5% Similarity=0.043 Sum_probs=34.0
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.++ ..++++.+++.|++++||+++++|++++.+++..
T Consensus 3304 ~~l~i~~~--~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 3345 (3956)
T PRK12467 3304 GCLVVRDN--DLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA 3345 (3956)
T ss_pred CEEEECCc--ccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc
Confidence 45555553 2269999999999999999999999999887653
No 97
>PRK12467 peptide synthase; Provisional
Probab=95.66 E-value=0.03 Score=43.85 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=33.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.+.. ...|++.+++.|+++++|+++++|++++.|.+.
T Consensus 1785 ~~lvi~~~~-~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 1826 (3956)
T PRK12467 1785 ARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826 (3956)
T ss_pred CEEEEcChh-hcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhh
Confidence 455555432 225899999999999999999999999998874
No 98
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=95.60 E-value=0.011 Score=37.99 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=22.6
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++..+++.++++++|++..+|.++..+.+
T Consensus 233 ~~~~~~~~i~~~~~t~~~~p~~~~~~l~~ 261 (525)
T PRK05851 233 SPFRWLSWLSDSRATLTAAPNFAYNLIGK 261 (525)
T ss_pred CHHHHHHHHHHhCCeEEeCCcHHHHHHHH
Confidence 67889999999999988766655555544
No 99
>PRK05691 peptide synthase; Validated
Probab=95.49 E-value=0.04 Score=43.40 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=34.0
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.+. ...+|++.+++.|+++++|+++++|++++.+.+.+
T Consensus 1340 ~~l~i~~~-~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 1382 (4334)
T PRK05691 1340 CRLVLAGP-GEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382 (4334)
T ss_pred CEEEEcCc-cccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCc
Confidence 45555543 22369999999999999999999999999987653
No 100
>PRK07514 malonyl-CoA synthase; Validated
Probab=95.45 E-value=0.037 Score=35.05 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=29.4
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.++ ++++.+++.+ +++|.+.++|+++..++..+
T Consensus 225 ~~~~~~~----~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~ 261 (504)
T PRK07514 225 SMIFLPK----FDPDAVLALM--PRATVMMGVPTFYTRLLQEP 261 (504)
T ss_pred EEEECCC----CCHHHHHHHH--HhheeeecHHHHHHHHHcCC
Confidence 3455544 6899999999 47999999999998887654
No 101
>PRK07798 acyl-CoA synthetase; Validated
Probab=95.39 E-value=0.053 Score=34.39 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.6
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHH
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
+++++.+.. .+++..+|+.|+++++|.+.++|..+
T Consensus 245 ~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~~~~~ 279 (533)
T PRK07798 245 QTVVLLPDV--RFDADEVWRTIEREKVNVITIVGDAM 279 (533)
T ss_pred ceEEEecCC--CcCHHHHHHHHHHhCCeEEEechHHH
Confidence 355666532 26999999999999999999988655
No 102
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=95.14 E-value=0.074 Score=37.23 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=31.0
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++++ + ++.+.+++.++++++|+++++|+++..+.+.
T Consensus 862 ~~~~~~~-~--~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~ 900 (1140)
T PRK06814 862 KVFLYPS-P--LHYRIIPELIYDTNATILFGTDTFLNGYARY 900 (1140)
T ss_pred EEEEecC-c--ccHHHHHHHHHhcCCEEEEecHHHHHHHHhh
Confidence 4455543 2 4677889999999999999999999888764
No 103
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=95.10 E-value=0.059 Score=33.06 Aligned_cols=42 Identities=7% Similarity=-0.092 Sum_probs=32.6
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++++... .+++.++++++++++|.+.++|+++..|++..
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~ 229 (408)
T TIGR01733 188 TLVVPPEDEE-RDAALLAALIAEHPVTVLNLTPSLLALLAAAL 229 (408)
T ss_pred EEEEcChhhc-cCHHHHHHHHHHcCceEEEeCHHHHHHHHHhh
Confidence 4555555321 14789999999999999999999999998764
No 104
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=94.93 E-value=0.043 Score=34.08 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=26.3
Q ss_pred hHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 17 DRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+.+++.++++++|++.++|++++.+.+.+
T Consensus 187 ~~~~~~l~~~~~t~~~~~P~~l~~l~~~~ 215 (436)
T TIGR01923 187 NQLLEMIANERVTHISLVPTQLNRLLDEG 215 (436)
T ss_pred HHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence 38999999999999999999999888764
No 105
>PRK12582 acyl-CoA synthetase; Provisional
Probab=94.78 E-value=0.057 Score=35.59 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=23.2
Q ss_pred hHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 17 DRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
..+++.++++++|+++++|+++..|++.
T Consensus 306 ~~~~~~i~~~~~t~~~~vP~~~~~l~~~ 333 (624)
T PRK12582 306 EETIRNLREISPTVYGNVPAGYAMLAEA 333 (624)
T ss_pred HHHHHHHHhcCCeEEeccCHHHHHHHHH
Confidence 3456778899999999999999888753
No 106
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=94.57 E-value=0.094 Score=35.08 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=26.2
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++..+++.++++++|++.++|.++..+.+
T Consensus 300 ~~~~l~~~l~~~~pt~~~~vP~~~~~l~~ 328 (660)
T PLN02430 300 DLNALRDDLMELKPTLLAGVPRVFERIHE 328 (660)
T ss_pred ChhhHHHHHHHhCCcEEEecHHHHHHHHH
Confidence 77889999999999999999999987764
No 107
>KOG1179|consensus
Probab=94.47 E-value=0.099 Score=35.30 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=35.8
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEG 47 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~ 47 (63)
+|+|+-.. |++..+|+-..+|+||++--+--+.|.|++.+..
T Consensus 310 aT~VlrkK----FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~ 351 (649)
T KOG1179|consen 310 ATVVLRKK----FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPS 351 (649)
T ss_pred ceEEEecc----cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCC
Confidence 45666555 9999999999999999999899999999988753
No 108
>PTZ00297 pantothenate kinase; Provisional
Probab=94.28 E-value=0.082 Score=38.77 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=27.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++++.+++.|+++++|+++++|++|..+.+
T Consensus 676 ~d~~~lledL~~~rPTv~~~VPrv~ekI~~ 705 (1452)
T PTZ00297 676 VDAAHLQRAFVKFQPTILVAAPSLFSTSRL 705 (1452)
T ss_pred CCHHHHHHHHHHHCCEEEEecHHHHHHHHH
Confidence 689999999999999999999999986654
No 109
>PRK05691 peptide synthase; Validated
Probab=93.29 E-value=0.21 Score=39.73 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=33.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.+.. ...|+..+++.+++++||++.++|++++.++..
T Consensus 3936 ~~l~i~~~~-~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~ 3977 (4334)
T PRK05691 3936 ARVEIVPNA-IAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE 3977 (4334)
T ss_pred CEEEEcCcc-ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence 455566542 235899999999999999999999999988754
No 110
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=92.77 E-value=0.2 Score=31.73 Aligned_cols=30 Identities=7% Similarity=-0.033 Sum_probs=24.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++..+++.++.+ |+++++|++++.+.+.+
T Consensus 173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~ 202 (386)
T TIGR02372 173 APASGIMRHARPG--DLIVGTPFIWEQLADLD 202 (386)
T ss_pred CChHHHHHhhccC--CEEEECcHHHHHHHhhC
Confidence 6888999988754 88999999999987653
No 111
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=92.73 E-value=0.65 Score=28.38 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=25.5
Q ss_pred CChhHHHHHHhhhc--ceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYK--VNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~--vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.+++++ ++....+|+.+..++..+
T Consensus 111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~ 144 (358)
T PRK07824 111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDP 144 (358)
T ss_pred cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCc
Confidence 69999999999998 556667888887766543
No 112
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=91.92 E-value=0.1 Score=34.32 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=26.2
Q ss_pred CChhHHHHHHh--hhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVE--KYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~--~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++..+++.++ ++++|.++++|+++..+++.
T Consensus 273 ~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~ 305 (612)
T PRK12476 273 RRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQ 305 (612)
T ss_pred HHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHH
Confidence 38999999995 58999999999998877653
No 113
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=91.51 E-value=0.2 Score=32.99 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=24.8
Q ss_pred ChhHHHHHHhhhcc---eEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKV---NQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~v---T~~~~~Pt~~~~l~~ 43 (63)
++..+++.++++++ |.+.++|+++..+.+
T Consensus 260 ~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~ 291 (631)
T PRK07769 260 RPGRWIRELARKPGGTGGTFSAAPNFAFEHAA 291 (631)
T ss_pred CHHHHHHHHHhhccccCceEeeCCchHHHHHH
Confidence 89999999999987 788999998876654
No 114
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=91.31 E-value=0.2 Score=32.21 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=24.4
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++..++++++++++|+++++|.++..+.+
T Consensus 234 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 262 (545)
T PRK07768 234 DPLLWAELISKYRGTMTAAPNFAYALLAR 262 (545)
T ss_pred hHHHHHHHHHHhCCEEEECchHHHHHHHH
Confidence 78889999999999999888877766553
No 115
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=87.42 E-value=0.88 Score=29.05 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=20.1
Q ss_pred HHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 20 WSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 20 ~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
.....++++|++.++|++++.+++.
T Consensus 200 ~~~~~~~~~t~~~~vP~~l~~l~~~ 224 (452)
T PRK07445 200 QELPPNPSDFFLSLVPTQLQRLLQL 224 (452)
T ss_pred hhhhhhcCceEEEehHHHHHHHHhh
Confidence 3445678999999999999988763
No 116
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=86.87 E-value=1.7 Score=29.35 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.5
Q ss_pred HHhhhcceEEeecHHHHHHHHh
Q psy10051 22 IVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 22 ~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
.++++++|++.++|.++..+.+
T Consensus 356 ~l~~~~pT~~~~vP~~~~~l~~ 377 (700)
T PTZ00216 356 DLTEFRPVFLIGVPRIFDTIKK 377 (700)
T ss_pred hHHHcCCcEEEechHHHHHHHH
Confidence 5889999999999999987764
No 117
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=86.83 E-value=2.1 Score=29.18 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=27.1
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
.|+..+++.+.+.+.|.+++||-+|..+.+
T Consensus 266 ~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~ 295 (613)
T COG1022 266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYK 295 (613)
T ss_pred CCHHHHHHHHHHhCCeEEeechHHHHHHHH
Confidence 499999999999999999999999976654
No 118
>PRK09192 acyl-CoA synthetase; Validated
Probab=86.68 E-value=0.56 Score=30.61 Aligned_cols=29 Identities=7% Similarity=0.192 Sum_probs=23.2
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++..++++++++++|+++..|.++..+..
T Consensus 258 ~~~~~~~~i~~~~~t~~~~~~~~~~l~~~ 286 (579)
T PRK09192 258 RPLQWLDLISRNRGTISYSPPFGYELCAR 286 (579)
T ss_pred CHHHHHHHHHhcCcEEEeCCcHHHHHHHH
Confidence 68899999999999988876665655543
No 119
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=86.39 E-value=0.72 Score=31.15 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=23.4
Q ss_pred hHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 17 DRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
..+++.++++++|++.++|+++..+.+
T Consensus 337 ~~~~~~i~~~~pT~~~~vP~~l~~l~~ 363 (696)
T PLN02387 337 KGTKGDASALKPTLMTAVPAILDRVRD 363 (696)
T ss_pred cCchhhHHHhCCcEEEehhHHHHHHHH
Confidence 446778999999999999999988864
No 120
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.33 E-value=3.6 Score=27.23 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=32.3
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++.+.... .|++.+.+.++++++|.+..+|.++..++..
T Consensus 434 ~l~~~~~~~~-~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~ 474 (642)
T COG1020 434 RLVLAPALLQ-VDPAALLELLEAQGITVLLLVPLLLRLLLLA 474 (642)
T ss_pred EEEecCcccc-CCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence 3444443222 5899999999999999999999999988865
No 121
>KOG1256|consensus
Probab=82.74 E-value=3.3 Score=28.74 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=29.8
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
.+.+++| |+..+-+-+.+.+.|.+.+||-.|..+.+
T Consensus 329 ~IgF~~g-----D~~~l~~dlk~lkPT~f~~VPRVl~riye 364 (691)
T KOG1256|consen 329 KIGFARG-----DILKLTDDLKELKPTVFPGVPRVLERIYE 364 (691)
T ss_pred EEEEecC-----ChHHHHHHHHHhCCcEEeccHhHHHHHHH
Confidence 3455666 88889999999999999999999976653
No 122
>PRK05850 acyl-CoA synthetase; Validated
Probab=81.85 E-value=1.5 Score=28.59 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=19.1
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHH
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIR 39 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~ 39 (63)
++..++++++++++|.+ .+|+++.
T Consensus 247 ~p~~~~~~i~~~~~~~~-~~p~~~~ 270 (578)
T PRK05850 247 RPARWMQLLASNPHAFS-AAPNFAF 270 (578)
T ss_pred CHHHHHHHHHHcCCeEE-eCCcHHH
Confidence 78999999999999865 4565543
No 123
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=81.02 E-value=5.5 Score=25.63 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.6
Q ss_pred hHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 17 DRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
+..+++|+++++|.+.+.|+.+..|.+
T Consensus 166 ~~~~~~i~~~~~t~l~~~ps~ll~La~ 192 (445)
T TIGR03335 166 TFPIRIIESYRPTGIVASVFKLLRLAR 192 (445)
T ss_pred hHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 467899999999999999998766554
No 124
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=78.52 E-value=5 Score=26.47 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=26.8
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+.++..+++.++++|++.+.|+.+..|.+.
T Consensus 170 ~~~~~~~l~~df~~tvI~~tps~~l~lae~ 199 (438)
T COG1541 170 NTERQLELMKDFKPTVIAATPSYLLYLAEE 199 (438)
T ss_pred cHHHHHHHHHhcCCcEEEEChHHHHHHHHH
Confidence 788999999999999999999998777654
No 125
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=78.15 E-value=2.3 Score=23.81 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=16.1
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+++.+.+++|+++|++|-
T Consensus 4 ~~~l~~~L~~~Gv~~vfgvpG 24 (172)
T PF02776_consen 4 AEALAEALKANGVTHVFGVPG 24 (172)
T ss_dssp HHHHHHHHHHTT-SEEEEE--
T ss_pred HHHHHHHHHHCCCeEEEEEeC
Confidence 467899999999999999886
No 126
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=76.73 E-value=2.3 Score=23.91 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=18.0
Q ss_pred hHHHHHHhhhcceEEeecHHH
Q psy10051 17 DRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
+.+.+.+.+++|+++|++|--
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~ 22 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCD 22 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcH
Confidence 457899999999999999843
No 127
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=73.85 E-value=7.2 Score=25.43 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=26.7
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+.+..++.|.++++|.+.+.|+++..|.+.
T Consensus 175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~ 204 (430)
T TIGR02304 175 PFQAHIKRLNQRKPSIIVAPPSVLRALALE 204 (430)
T ss_pred CHHHHHHHHHHhCCCEEEEcHHHHHHHHHH
Confidence 578899999999999999999999877764
No 128
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=64.19 E-value=6.6 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|+.+|++|--
T Consensus 3 ~~~l~~~L~~~Gv~~vFgipG~ 24 (164)
T cd07039 3 ADVIVETLENWGVKRVYGIPGD 24 (164)
T ss_pred HHHHHHHHHHCCCCEEEEcCCC
Confidence 4668899999999999998743
No 129
>PF13790 DUF4182: Domain of unknown function (DUF4182)
Probab=63.82 E-value=2.7 Score=18.40 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=13.2
Q ss_pred hHHHHHHhhhcceEEeec
Q psy10051 17 DRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~ 34 (63)
+...+.++.++||.+++.
T Consensus 10 ~~~Id~~e~ekV~~lYg~ 27 (38)
T PF13790_consen 10 NETIDHFETEKVTTLYGK 27 (38)
T ss_pred cceeeeecCCcEEEEEEE
Confidence 445666788899998864
No 130
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=60.69 E-value=32 Score=20.20 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=26.7
Q ss_pred eecCCCCCCChhHHHHHHhhhcceEEeec--------HHHHHHHHhcCC
Q psy10051 6 KFEGTPFHPGNDRYWSIVEKYKVNQFYTA--------PTAIRTLMKYGE 46 (63)
Q Consensus 6 l~~g~p~~~d~~~~~~~i~~~~vT~~~~~--------Pt~~~~l~~~~~ 46 (63)
-++..|......+++++++++++...|.+ |..++.+.+.+.
T Consensus 42 TFDDGp~~~~t~~lL~~L~~~~vkATFFv~G~~~~~~p~~ir~i~~~Gh 90 (224)
T TIGR02884 42 TFDNGYENGYTPKILDVLKEKKVPAAFFVTGHYIKTQPDLIKRMVDEGH 90 (224)
T ss_pred EEECCCCccchHHHHHHHHHcCCCeEEEeechhhHHCHHHHHHHHHcCC
Confidence 45544532224579999999999744443 667777777664
No 131
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=60.07 E-value=7.2 Score=21.79 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=15.4
Q ss_pred HHHHHHhhhcceEEeecH
Q psy10051 18 RYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 18 ~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+++|+++|+.|
T Consensus 2 ~l~~~L~~~Gi~~vFg~p 19 (162)
T cd07038 2 YLLERLKQLGVKHVFGVP 19 (162)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 467889999999999964
No 132
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=58.41 E-value=9.2 Score=20.93 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=17.4
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+.+++|+++|++|
T Consensus 2 ~e~i~~~L~~~gv~~vfg~P 21 (160)
T cd07034 2 NEAVARGALAAGVDVVAAYP 21 (160)
T ss_pred hHHHHHHHHHhCCCEEEEeC
Confidence 36788999999999999987
No 133
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=57.10 E-value=8.5 Score=20.92 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=16.5
Q ss_pred HHHHHHhhhcceEEeecHH
Q psy10051 18 RYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 18 ~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++.+|++|-
T Consensus 2 ~i~~~L~~~Gv~~vfg~pg 20 (155)
T cd07035 2 ALVEALKAEGVDHVFGVPG 20 (155)
T ss_pred HHHHHHHHcCCCEEEECCC
Confidence 4678899999999999984
No 134
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=56.60 E-value=21 Score=17.85 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=15.9
Q ss_pred ecCCCCCCChhHHHHHHhhh
Q psy10051 7 FEGTPFHPGNDRYWSIVEKY 26 (63)
Q Consensus 7 ~~g~p~~~d~~~~~~~i~~~ 26 (63)
++..|.+|+.+.+.+.|++|
T Consensus 8 Ldd~~~yPs~e~i~~aIE~Y 27 (74)
T PF14201_consen 8 LDDSPKYPSKEEICEAIEKY 27 (74)
T ss_pred cccCCCCCCHHHHHHHHHHH
Confidence 55678889999999999653
No 135
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=56.42 E-value=39 Score=19.80 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=28.2
Q ss_pred eEeecCCCCCCChhHHHHHHhhhcce-EEeecHHHHHHHHhc
Q psy10051 4 GRKFEGTPFHPGNDRYWSIVEKYKVN-QFYTAPTAIRTLMKY 44 (63)
Q Consensus 4 ~vl~~g~p~~~d~~~~~~~i~~~~vT-~~~~~Pt~~~~l~~~ 44 (63)
+++|+..+...+++.+.+.+++.++. +.+.+|...+.+.+.
T Consensus 147 ~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~~~f~~~ 188 (240)
T PRK09189 147 AECYDMLPVMYSPATLSAILGGAPFDAVLLYSRVAARRFFAL 188 (240)
T ss_pred EEEEEeecCCCChHHHHHHHhcCCCCEEEEeCHHHHHHHHHH
Confidence 46776544334566778888877765 678888888877654
No 136
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=55.46 E-value=22 Score=17.40 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=19.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYK 27 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~ 27 (63)
++-|++-|+..+.|-+.+|+.+.+..
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~ 28 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVH 28 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHH
Confidence 35677788888889999999886544
No 137
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=53.26 E-value=11 Score=21.32 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=16.0
Q ss_pred HHHHHhhhcceEEeecHH
Q psy10051 19 YWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 19 ~~~~i~~~~vT~~~~~Pt 36 (63)
+.+.+++++|+..|++|-
T Consensus 3 l~~~L~~~Gv~~vFg~pG 20 (162)
T cd07037 3 LVEELKRLGVRDVVISPG 20 (162)
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 678899999999999985
No 138
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=52.77 E-value=41 Score=18.97 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=26.2
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEEee-c-------HHHHHHHHhcCC
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFYT-A-------PTAIRTLMKYGE 46 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~~~-~-------Pt~~~~l~~~~~ 46 (63)
+.++..|..-....++++++++++...|. + |..++.+.+.+.
T Consensus 10 LTFDDgp~~~~t~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i~~~Gh 59 (191)
T TIGR02764 10 LTFDISWGNDYTEPILDTLKEYDVKATFFLSGSWAERHPELVKEIVKDGH 59 (191)
T ss_pred EEEECCCCcccHHHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHHHhCCC
Confidence 45666554212467999999999974433 2 555666666543
No 139
>PF11103 DUF2887: Protein of unknown function (DUF2887); InterPro: IPR022573 This bacterial group of proteins has no known function.
Probab=51.25 E-value=11 Score=22.29 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=22.7
Q ss_pred cHHHHHHHHhcCCCCCccccCCcccccccC
Q psy10051 34 APTAIRTLMKYGEGPVQKHEVELDSNKQQE 63 (63)
Q Consensus 34 ~Pt~~~~l~~~~~~~~~~~dl~~l~~~~~~ 63 (63)
.|..+..|+..+....+.|.++++.+||.+
T Consensus 12 ~P~~~feLi~~~~~~a~~Y~F~SvevKq~~ 41 (200)
T PF11103_consen 12 FPSIFFELIGGPPEEAENYQFRSVEVKQLA 41 (200)
T ss_pred ChHHHHHHcCCCcccccceEEecchhhccc
Confidence 588888888765543466999999999964
No 140
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=48.19 E-value=32 Score=21.78 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=21.9
Q ss_pred hHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 17 DRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
..+++.+ .++|.+..+|+++..++...
T Consensus 210 ~~~~~~i--~~~t~~~~~P~~~~~l~~~~ 236 (458)
T PRK09029 210 QPLEQAL--AGCTHASLVPTQLWRLLDNR 236 (458)
T ss_pred HHHHHHH--hhceeeecChHHHHHHHhcc
Confidence 5678887 48999999999998887653
No 141
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=46.91 E-value=16 Score=23.49 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=18.0
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|++.|++|-
T Consensus 3 ~~~l~~~L~~~GV~~vFg~pG 23 (432)
T TIGR00173 3 ASVLVEELVRLGVRHVVISPG 23 (432)
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 356889999999999999884
No 142
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=45.43 E-value=19 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.8
Q ss_pred CChhHHHHHHhhhcceEEeecHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.|+++..+++++|+|+..+..|.
T Consensus 668 ~d~~~~~~Ll~kY~V~YVyVG~~ 690 (723)
T TIGR03662 668 GDPTEARELLERYGVDYVYVGPL 690 (723)
T ss_pred CCHHHHHHHHHHcCCeEEEECch
Confidence 48999999999999999998874
No 143
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=44.14 E-value=8.9 Score=21.08 Aligned_cols=36 Identities=3% Similarity=0.068 Sum_probs=22.3
Q ss_pred cCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 8 EGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 8 ~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
..+|-+-|-+-+++.+.+.++..++..|++--.+..
T Consensus 30 ~~SpEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wyd 65 (130)
T PF04914_consen 30 TKSPEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYD 65 (130)
T ss_dssp SS-THHHHHHHHHHHHHHTT-EEEEEE----HHHHH
T ss_pred cCCccHHHHHHHHHHHHHcCCceEEEecCCcHHHHH
Confidence 344544467889999999999999998876544443
No 144
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=43.71 E-value=67 Score=19.64 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=24.0
Q ss_pred ChhHHHHHHhhhcceEEeec--------HHHHHHHHhcCC
Q psy10051 15 GNDRYWSIVEKYKVNQFYTA--------PTAIRTLMKYGE 46 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~--------Pt~~~~l~~~~~ 46 (63)
+..+++++++++++...+.+ |.+++.+.+.+.
T Consensus 29 nt~riL~lL~~~gikATFFv~g~~~e~~p~lir~i~~~Gh 68 (265)
T TIGR03006 29 NTDRILDLLDRHGVKATFFTLGWVAERYPELVRRIVAAGH 68 (265)
T ss_pred hHHHHHHHHHHcCCcEEEEEeccchhhCHHHHHHHHHcCC
Confidence 57789999999999644443 777888877664
No 145
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=43.10 E-value=18 Score=18.03 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=18.6
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
|+.+..++.+.+.+++....+|.++
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~~ 69 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLAP 69 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCcc
Confidence 5777777778777888777777654
No 146
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=43.00 E-value=78 Score=19.37 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=21.9
Q ss_pred hhHHHHHHhhhcceEEeec--------HHHHHHHHhcCC
Q psy10051 16 NDRYWSIVEKYKVNQFYTA--------PTAIRTLMKYGE 46 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~--------Pt~~~~l~~~~~ 46 (63)
..++++++.++++...|.+ |.+++.+.+.+.
T Consensus 100 t~~iL~iLkk~~vkATFFv~G~~i~~~p~l~k~i~~~Gh 138 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEGKWVKENSQLAKMIVEQGH 138 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeehHhhhHCHHHHHHHHHCCC
Confidence 3579999999999855544 556666666553
No 147
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.97 E-value=21 Score=18.67 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=20.6
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+.+.++ ..+|+||.|-
T Consensus 24 ~ta~ei~~~l~~~~~~i--s~~TVYR~L~ 50 (120)
T PF01475_consen 24 LTAEEIYDKLRKKGPRI--SLATVYRTLD 50 (120)
T ss_dssp EEHHHHHHHHHHTTTT----HHHHHHHHH
T ss_pred CCHHHHHHHhhhccCCc--CHHHHHHHHH
Confidence 79999999999877665 4588898665
No 148
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.48 E-value=34 Score=17.94 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=15.1
Q ss_pred CChhHHHHHHhhhcceE
Q psy10051 14 PGNDRYWSIVEKYKVNQ 30 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~ 30 (63)
+||+++.+.+++++.++
T Consensus 12 ~~~dri~~~l~e~g~~v 28 (96)
T COG4004 12 PDPDRIMRGLSELGWTV 28 (96)
T ss_pred CCHHHHHHHHHHhCeeE
Confidence 79999999999998764
No 149
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=42.25 E-value=23 Score=18.23 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=18.1
Q ss_pred ecCCCCCCChhHHHHHHhhhcceEEeec
Q psy10051 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 7 ~~g~p~~~d~~~~~~~i~~~~vT~~~~~ 34 (63)
|.|....+.+.++++.+++.+....+.+
T Consensus 10 ~~g~~~ipga~e~l~~L~~~g~~~~~lT 37 (101)
T PF13344_consen 10 YNGNEPIPGAVEALDALRERGKPVVFLT 37 (101)
T ss_dssp EETTEE-TTHHHHHHHHHHTTSEEEEEE
T ss_pred EeCCCcCcCHHHHHHHHHHcCCCEEEEe
Confidence 3443334677888888888887766653
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=41.91 E-value=50 Score=17.23 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.2
Q ss_pred ceEeecCCCCCCChhHHHHHHhhh
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKY 26 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~ 26 (63)
|.|+...-|.+++.+.+.+.|.++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~ 25 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEH 25 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHh
Confidence 677777789889999999999875
No 151
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.08 E-value=36 Score=18.79 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.1
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
++++.+++.+.+.+.++- .+|+||.|-.
T Consensus 37 ~sAeei~~~l~~~~p~is--laTVYr~L~~ 64 (145)
T COG0735 37 LSAEELYEELREEGPGIS--LATVYRTLKL 64 (145)
T ss_pred CCHHHHHHHHHHhCCCCC--HhHHHHHHHH
Confidence 799999999999888764 6899987653
No 152
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=39.51 E-value=43 Score=19.06 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=18.5
Q ss_pred CCCCChhHHHHHHhhhcceEEeec
Q psy10051 11 PFHPGNDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 11 p~~~d~~~~~~~i~~~~vT~~~~~ 34 (63)
|..-+.+.+|++|-+++++...+.
T Consensus 50 P~~~t~~~FW~mv~~~~~~~Iv~L 73 (235)
T PF00102_consen 50 PMPDTIEDFWQMVWEQKVQIIVML 73 (235)
T ss_dssp -SGGGHHHHHHHHHHTTBSEEEEE
T ss_pred cccccccceehheeeccccceecc
Confidence 544478999999999999976543
No 153
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=39.28 E-value=26 Score=23.33 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=19.1
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|+++|++|--
T Consensus 12 a~~l~~~L~~~GV~~vFgvpG~ 33 (568)
T PRK07449 12 AAVILEELTRLGVRHVVIAPGS 33 (568)
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 5778999999999999998754
No 154
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=39.22 E-value=23 Score=17.55 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=16.6
Q ss_pred HHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 18 RYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 18 ~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
.+|.+..+++...-..+..++..+.+..
T Consensus 2 TLw~IA~~~~~~~~~s~~q~m~ai~~aN 29 (74)
T TIGR03505 2 TLWGIAQRVRPDNSVSLYQMMLALYRAN 29 (74)
T ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHC
Confidence 4788888887664333555555555443
No 155
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.88 E-value=37 Score=18.59 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=21.8
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+...++ ..+|+||.|-
T Consensus 34 ~sa~eI~~~l~~~~~~i--~~aTVYR~L~ 60 (148)
T PRK09462 34 VSAEDLYKRLIDMGEEI--GLATVYRVLN 60 (148)
T ss_pred CCHHHHHHHHHhhCCCC--CHHHHHHHHH
Confidence 79999999999888663 3589998764
No 156
>PRK07524 hypothetical protein; Provisional
Probab=38.76 E-value=26 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.2
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|++.|++|--
T Consensus 5 a~~l~~~L~~~Gv~~vFg~pG~ 26 (535)
T PRK07524 5 GEALVRLLEAYGVETVFGIPGV 26 (535)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc
Confidence 5778999999999999999844
No 157
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=38.56 E-value=26 Score=23.43 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 6 a~~l~~~L~~~GV~~vFg~pG 26 (574)
T PRK09124 6 ADYIAKTLEQAGVKRIWGVTG 26 (574)
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 577899999999999999873
No 158
>PRK12474 hypothetical protein; Provisional
Probab=38.40 E-value=26 Score=23.13 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=19.4
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+++.+++++|++.|++|--
T Consensus 8 ~~~l~~~L~~~GV~~vFGvpG~ 29 (518)
T PRK12474 8 ADSVVDTLLNCGVEVCFANPGT 29 (518)
T ss_pred HHHHHHHHHHCCCCEEEECCCc
Confidence 6788999999999999999854
No 159
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=38.18 E-value=27 Score=23.32 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=19.5
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+++.+.+++|++.|++|--
T Consensus 16 ~~~l~~~L~~~GV~~vFgvpG~ 37 (564)
T PRK08155 16 AELIVRLLERQGIRIVTGIPGG 37 (564)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc
Confidence 7889999999999999998753
No 160
>PRK07586 hypothetical protein; Validated
Probab=38.07 E-value=27 Score=22.92 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|++.|++|--
T Consensus 4 ~~~l~~~L~~~Gv~~vFG~pG~ 25 (514)
T PRK07586 4 AESLVRTLVDGGVDVCFANPGT 25 (514)
T ss_pred HHHHHHHHHHCCCCEEEECCCC
Confidence 4678899999999999998843
No 161
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=37.91 E-value=27 Score=23.30 Aligned_cols=20 Identities=5% Similarity=0.262 Sum_probs=17.5
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+++.+++++|+..|++|
T Consensus 3 ~~~l~~~L~~~Gv~~vFGvp 22 (535)
T TIGR03394 3 AEALLRALKDRGAQEMFGIP 22 (535)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 35688999999999999987
No 162
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.51 E-value=30 Score=23.17 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|++.|++|-
T Consensus 7 ~~~l~~~L~~~Gv~~vFgvpG 27 (572)
T PRK08979 7 ASMIVRSLIDEGVKHIFGYPG 27 (572)
T ss_pred HHHHHHHHHHcCCCEEEEcCC
Confidence 678899999999999999984
No 163
>PRK07064 hypothetical protein; Provisional
Probab=36.40 E-value=30 Score=22.92 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|++.|++|.
T Consensus 6 ~~~l~~~L~~~Gv~~vFgvpG 26 (544)
T PRK07064 6 GELIAAFLEQCGVKTAFGVIS 26 (544)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 567889999999999999874
No 164
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=36.26 E-value=31 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|+..|+.|.
T Consensus 5 a~~lv~~L~~~GV~~VFGiPG 25 (550)
T COG0028 5 AEALVEALEANGVDTVFGIPG 25 (550)
T ss_pred HHHHHHHHHHcCCcEEEeCCC
Confidence 477899999999999999874
No 165
>PLN02573 pyruvate decarboxylase
Probab=35.94 E-value=30 Score=23.36 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+++++|++.|++|
T Consensus 19 a~~l~~~L~~~Gv~~vFGvp 38 (578)
T PLN02573 19 GRHLARRLVEIGVTDVFSVP 38 (578)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 57889999999999999997
No 166
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=35.91 E-value=30 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|++.|++|-
T Consensus 6 a~~l~~~L~~~GV~~vFGvpG 26 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYPG 26 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeCC
Confidence 577899999999999999864
No 167
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.75 E-value=31 Score=23.06 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
++.+.+.+.+++|+++|++|-
T Consensus 7 a~~l~~~L~~~GV~~vFg~pG 27 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFGYPG 27 (574)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 678899999999999999873
No 168
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=34.99 E-value=32 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|++.|++|-
T Consensus 6 a~~l~~~L~~~GV~~vFGvpG 26 (588)
T TIGR01504 6 VDAAVYVLEKEGITTAFGVPG 26 (588)
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 577899999999999999874
No 169
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=34.21 E-value=64 Score=17.72 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=19.0
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeec
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~ 34 (63)
.++++.|. ..+.+-+++++++++.+++-
T Consensus 68 ~L~v~~g~----~~~~l~~l~~~~~~~~V~~~ 95 (165)
T PF00875_consen 68 PLLVLRGD----PEEVLPELAKEYGATAVYFN 95 (165)
T ss_dssp -EEEEESS----HHHHHHHHHHHHTESEEEEE
T ss_pred ceEEEecc----hHHHHHHHHHhcCcCeeEec
Confidence 46677772 34555578889999987764
No 170
>PF14601 TFX_C: DNA_binding protein, TFX, C-term; PDB: 1NR3_A.
Probab=34.21 E-value=70 Score=16.30 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=22.2
Q ss_pred hhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
|+.+++...+.+|.+-+..|.++..+....+
T Consensus 29 P~~if~~aDe~gIKV~y~t~~li~~i~~~a~ 59 (84)
T PF14601_consen 29 PEIIFKEADEAGIKVRYDTPELINFIREAAP 59 (84)
T ss_dssp HHHHHHHHHHHS-S----HHHHHHHHHHH-S
T ss_pred HHHHHHHHhHcCCeeccCHHHHHHHHHHhch
Confidence 7889999999999999999999998887644
No 171
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=33.83 E-value=35 Score=22.89 Aligned_cols=20 Identities=5% Similarity=0.338 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+++++|+++|++|
T Consensus 10 a~~l~~~L~~~GV~~iFgvp 29 (569)
T PRK08327 10 AELFLELLKELGVDYIFINS 29 (569)
T ss_pred HHHHHHHHHHCCCCEEEEcC
Confidence 67889999999999999998
No 172
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.65 E-value=48 Score=20.43 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=26.6
Q ss_pred EeecCCCCCCChhHHHHHHh------hhcceEEeecHHHHHHHHh
Q psy10051 5 RKFEGTPFHPGNDRYWSIVE------KYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~------~~~vT~~~~~Pt~~~~l~~ 43 (63)
++.+|+ -|.+.+-++++ +|++|+...+||.-..+.+
T Consensus 11 IiVEGA---sDvE~iSkalQr~aLG~eYnITisSIiPTT~~eIA~ 52 (290)
T COG4026 11 IIVEGA---SDVEVISKALQRLALGSEYNITISSIIPTTNVEIAK 52 (290)
T ss_pred EEeecc---chHHHHHHHHHHhhhcccceeEEEeeccCchHHHHH
Confidence 466775 47777777665 6999999999997654443
No 173
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.54 E-value=37 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.0
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|+++|++|--
T Consensus 7 a~~l~~~L~~~Gv~~vFgvpG~ 28 (574)
T PRK07979 7 AEMVVRSLIDQGVKQVFGYPGG 28 (574)
T ss_pred HHHHHHHHHHcCCCEEEEccCc
Confidence 6788999999999999998743
No 174
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.46 E-value=36 Score=22.88 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|++.|++|-
T Consensus 18 a~~l~~~L~~~GV~~vFGipG 38 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFGYPG 38 (570)
T ss_pred HHHHHHHHHHcCCCEEEEcCC
Confidence 688999999999999999864
No 175
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=33.19 E-value=35 Score=22.68 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|+..|++|-
T Consensus 4 ~~~l~~~L~~~Gv~~vFG~pG 24 (539)
T TIGR03393 4 GDYLLDRLTDIGIDHLFGVPG 24 (539)
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 467899999999999999873
No 176
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=32.95 E-value=36 Score=18.16 Aligned_cols=19 Identities=11% Similarity=0.384 Sum_probs=15.7
Q ss_pred HHHHHHhhhcceEEeecHH
Q psy10051 18 RYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 18 ~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++++++.|-
T Consensus 2 ~~~~~l~~~gv~~vfg~pg 20 (154)
T cd06586 2 AFAEVLTAWGVRHVFGYPG 20 (154)
T ss_pred hHHHHHHHcCCCEEEEcCC
Confidence 3678899999999998865
No 177
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=32.40 E-value=37 Score=22.66 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=19.1
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|++.|++|--
T Consensus 11 ~~~l~~~L~~~GV~~vFg~pG~ 32 (557)
T PRK08199 11 GQILVDALRANGVERVFCVPGE 32 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc
Confidence 6788999999999999998743
No 178
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=32.33 E-value=72 Score=20.84 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=22.8
Q ss_pred eEeecCCCCCCChhHHHHHHhhhcceEEee
Q psy10051 4 GRKFEGTPFHPGNDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 4 ~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~ 33 (63)
-++..|.|.+.+...+|+++++.++.+.+.
T Consensus 269 Ril~~G~P~~~~~~~~~k~~ee~Ga~VV~~ 298 (413)
T TIGR02260 269 RLVVEGPPNWTNFREFWKLFYDEGAVVVAS 298 (413)
T ss_pred EEEEECCCcchhHHHHHHHHHHCCCEEEEE
Confidence 466778887545467889999999998766
No 179
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=31.99 E-value=37 Score=22.46 Aligned_cols=22 Identities=9% Similarity=0.424 Sum_probs=19.2
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|++.|++|--
T Consensus 15 a~~l~~~L~~~GV~~vFgiPG~ 36 (530)
T PRK07092 15 RDATIDLLRRFGITTVFGNPGS 36 (530)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC
Confidence 6788999999999999998753
No 180
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.97 E-value=30 Score=18.62 Aligned_cols=25 Identities=4% Similarity=-0.043 Sum_probs=21.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
+++...++.+.+.+++.....|.++
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~Pl~l 80 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQSLHI 80 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCee
Confidence 6888888999999999988888765
No 181
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=31.89 E-value=39 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.2
Q ss_pred hHHHHHHhhhcceEEeecHH
Q psy10051 17 DRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt 36 (63)
+.+.+.+.+++|++.|++|-
T Consensus 3 ~~l~~~L~~~Gv~~vFg~pG 22 (539)
T TIGR02418 3 DLVVDQLENQGVRYVFGIPG 22 (539)
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 56889999999999999864
No 182
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.82 E-value=57 Score=16.73 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=20.7
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+.+.++ ..+|+||.|-
T Consensus 17 ~sa~ei~~~l~~~~~~i--~~~TVYR~L~ 43 (116)
T cd07153 17 LTAEEIYERLRKKGPSI--SLATVYRTLE 43 (116)
T ss_pred CCHHHHHHHHHhcCCCC--CHHHHHHHHH
Confidence 69999999998876553 3588888654
No 183
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=31.79 E-value=91 Score=18.73 Aligned_cols=29 Identities=10% Similarity=0.501 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhcce---EEeecHHHHHHHHhc
Q psy10051 16 NDRYWSIVEKYKVN---QFYTAPTAIRTLMKY 44 (63)
Q Consensus 16 ~~~~~~~i~~~~vT---~~~~~Pt~~~~l~~~ 44 (63)
.+.+++++++.++. -++++|+.|..+.+.
T Consensus 27 ~~~~l~Lia~arl~l~iscYmPpsVy~El~~f 58 (206)
T TIGR03875 27 VRTFLDLIARARLKLGIECYMPPSVYKELRRF 58 (206)
T ss_pred HHHHHHHHHHhhhccCceeecCHHHHHHHHHH
Confidence 45678888877433 346789999877654
No 184
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=31.60 E-value=60 Score=15.95 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=12.6
Q ss_pred hHHHHHHhhhcceEEe
Q psy10051 17 DRYWSIVEKYKVNQFY 32 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~ 32 (63)
.++++++.+++|++..
T Consensus 19 ~~i~~~l~~~~v~ii~ 34 (71)
T cd04910 19 LEILELLQRFKVSIIA 34 (71)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 4589999999987654
No 185
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=31.58 E-value=70 Score=16.82 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=20.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
|+.+..++.+.+.+++....+|-++
T Consensus 46 P~l~~~l~~l~~~g~~~v~vvPlfl 70 (126)
T PRK00923 46 PTIPEALKKLIGTGADKIIVVPVFL 70 (126)
T ss_pred CCHHHHHHHHHHcCCCEEEEEchhh
Confidence 5778888888888888888888765
No 186
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=31.55 E-value=40 Score=22.47 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=19.3
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|++.|++|--
T Consensus 6 ~~~l~~~L~~~GV~~vFGvpG~ 27 (554)
T TIGR03254 6 FHLVIDALKLNGINTIYGVVGI 27 (554)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc
Confidence 5778999999999999999864
No 187
>PRK06154 hypothetical protein; Provisional
Probab=31.54 E-value=41 Score=22.61 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+++++|++.|++|
T Consensus 23 a~~l~~~L~~~GV~~vFGip 42 (565)
T PRK06154 23 AEAVAEILKEEGVELLFGFP 42 (565)
T ss_pred HHHHHHHHHHcCCCEEEeCc
Confidence 57788999999999999998
No 188
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.49 E-value=42 Score=22.74 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+++++|++.|++|
T Consensus 14 a~~l~~~L~~~GV~~vFGvp 33 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFGYP 33 (595)
T ss_pred HHHHHHHHHHCCCCEEEEcc
Confidence 67889999999999999987
No 189
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.10 E-value=41 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.0
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|+..|++|--
T Consensus 7 a~~l~~~L~~~Gv~~vFgipG~ 28 (574)
T PRK06466 7 AEMLVRALRDEGVEYIYGYPGG 28 (574)
T ss_pred HHHHHHHHHHcCCCEEEECCCc
Confidence 6788999999999999998643
No 190
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=30.95 E-value=85 Score=21.51 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred CChhHHHHHHhhhcceEEeecH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~P 35 (63)
-|.++..+++++|+||..+..|
T Consensus 626 ~~~~K~~Ei~~KY~V~Yv~~G~ 647 (684)
T COG5427 626 TDAAKRAEILEKYDVTYVWVGP 647 (684)
T ss_pred CcHHHHHHHHHhcCceEEEEch
Confidence 3899999999999999988877
No 191
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=30.84 E-value=37 Score=19.50 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=7.4
Q ss_pred CceEeecCCCCCCCh
Q psy10051 2 NPGRKFEGTPFHPGN 16 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~ 16 (63)
.+..+|+|+ |||
T Consensus 2 ~~iavypGS---FDP 13 (159)
T COG0669 2 MKIAVYPGS---FDP 13 (159)
T ss_pred CeeEEeCCC---CCC
Confidence 455667776 554
No 192
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=30.75 E-value=42 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=19.0
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|++.|++|-
T Consensus 34 a~~l~~~L~~~GV~~vFgipG 54 (612)
T PRK07789 34 AQAVVRSLEELGVDVVFGIPG 54 (612)
T ss_pred HHHHHHHHHHCCCCEEEEcCC
Confidence 688999999999999999883
No 193
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=30.60 E-value=42 Score=22.36 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=18.7
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|++.|++|--
T Consensus 5 a~~l~~~L~~~GV~~vFg~pG~ 26 (549)
T PRK06457 5 AEVIIRVLEDNGIQRIYGIPGD 26 (549)
T ss_pred HHHHHHHHHHcCCCEEEEcCCc
Confidence 5678999999999999998643
No 194
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=30.52 E-value=87 Score=19.38 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=22.9
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEEeec
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~ 34 (63)
|+|.|.-.++.+.++++.+.+.++.+++..
T Consensus 18 vl~~G~~~ipga~e~l~~L~~~g~~~iflT 47 (269)
T COG0647 18 VLYRGNEAIPGAAEALKRLKAAGKPVIFLT 47 (269)
T ss_pred ceEeCCccCchHHHHHHHHHHcCCeEEEEe
Confidence 456665555788889999999999988764
No 195
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.49 E-value=45 Score=22.65 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=18.9
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++++|+++|+.|.
T Consensus 22 ~~~l~~~L~~~GV~~vFgipG 42 (616)
T PRK07418 22 AYALMDSLKRHGVKHIFGYPG 42 (616)
T ss_pred HHHHHHHHHHcCCCEEEeCcC
Confidence 678899999999999999974
No 196
>PRK08322 acetolactate synthase; Reviewed
Probab=30.42 E-value=42 Score=22.22 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.0
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG 24 (547)
T PRK08322 4 ADLFVKCLENEGVEYIFGIPG 24 (547)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 467899999999999999864
No 197
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=30.30 E-value=43 Score=22.39 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=19.0
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|++.|++|--
T Consensus 5 ~~~l~~~L~~~GV~~vFg~pG~ 26 (572)
T PRK06456 5 ARILVDSLKREGVKVIFGIPGL 26 (572)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc
Confidence 5778999999999999998643
No 198
>PRK04358 hypothetical protein; Provisional
Probab=30.11 E-value=1e+02 Score=18.68 Aligned_cols=28 Identities=11% Similarity=0.540 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhc----ceEEeecHHHHHHHHhc
Q psy10051 16 NDRYWSIVEKYK----VNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 16 ~~~~~~~i~~~~----vT~~~~~Pt~~~~l~~~ 44 (63)
.+.+++++++.+ ++ ++++|+.|..+...
T Consensus 31 ~~~~l~Lia~arl~l~is-~YmPpSVy~El~~f 62 (217)
T PRK04358 31 VEKFLDLIARARLKLGIS-CYMPPSVYKELRGF 62 (217)
T ss_pred HHHHHHHHHHhhhccCce-EEcCHHHHHHHHHH
Confidence 456778888774 44 57789999877754
No 199
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=29.79 E-value=44 Score=22.39 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.7
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|++.|++|-
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG 39 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPG 39 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 788999999999999999864
No 200
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.69 E-value=46 Score=22.46 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+++.+|+++|++|-
T Consensus 24 a~~l~~~L~~~GV~~vFgvpG 44 (587)
T PRK06965 24 AEILMKALAAEGVEFIWGYPG 44 (587)
T ss_pred HHHHHHHHHHcCCCEEEecCC
Confidence 678899999999999999854
No 201
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=29.68 E-value=68 Score=19.68 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=20.2
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEEee
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~~~ 33 (63)
+++.|.|.+++...+++.+++.++.+.+.
T Consensus 207 l~~~g~~~~~~~~~~~~~~e~~G~~vv~~ 235 (349)
T PF06050_consen 207 LLWDGIPPWFDSPSFFEWIEESGAVVVGD 235 (349)
T ss_dssp EEEECS--GGGHHHHHHHHHHTTEEEEEE
T ss_pred eEEeCCccccchhhHHHHHhcccceeeec
Confidence 45667776657777889999999976654
No 202
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=29.58 E-value=45 Score=22.34 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=19.9
Q ss_pred ChhHHHHHHhhhcceEEeecHHH
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
-.+.+.+.+++++|++.|++|.-
T Consensus 12 ~~~~l~~~L~~~GV~~vFGvpG~ 34 (569)
T PRK09259 12 GFHLVIDALKLNGIDTIYGVVGI 34 (569)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCc
Confidence 36778999999999999999853
No 203
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=29.31 E-value=46 Score=22.44 Aligned_cols=22 Identities=0% Similarity=0.123 Sum_probs=18.9
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|+++|++|--
T Consensus 9 ~~~l~~~L~~~GV~~vFGvpG~ 30 (588)
T PRK07525 9 SEAFVETLQAHGITHAFGIIGS 30 (588)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC
Confidence 6778999999999999998743
No 204
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=29.16 E-value=66 Score=14.42 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.3
Q ss_pred hhHHHHHHhhhcceEEee
Q psy10051 16 NDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~ 33 (63)
..++++.+++++++....
T Consensus 17 ~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 17 LRKIFEILEKHGISVDLI 34 (62)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 577899999999998765
No 205
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=28.95 E-value=47 Score=22.40 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|++.|++|--
T Consensus 6 ~~~l~~~L~~~GV~~vFg~pG~ 27 (578)
T PRK06546 6 AEQLVEQLVAAGVKRIYGIVGD 27 (578)
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 5778999999999999998643
No 206
>PRK10638 glutaredoxin 3; Provisional
Probab=28.92 E-value=79 Score=15.23 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=21.5
Q ss_pred CCceEeecCCCCCCChhHHHHHHhhhcceEE
Q psy10051 1 MNPGRKFEGTPFHPGNDRYWSIVEKYKVNQF 31 (63)
Q Consensus 1 ~~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~ 31 (63)
|..+++|.. +.-+-..++.++++++++..-
T Consensus 1 m~~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~ 30 (83)
T PRK10638 1 MANVEIYTK-ATCPFCHRAKALLNSKGVSFQ 30 (83)
T ss_pred CCcEEEEEC-CCChhHHHHHHHHHHcCCCcE
Confidence 667778864 333567888888998888753
No 207
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.90 E-value=73 Score=16.53 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.8
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
|+-+..++.+.+.+++.+..+|-++
T Consensus 42 P~i~~~l~~l~~~G~~~i~lvPl~L 66 (103)
T cd03413 42 PGLDDVLAKLKKAGIKKVTLMPLML 66 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEehhh
Confidence 5778888888888999999999765
No 208
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=28.80 E-value=47 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.5
Q ss_pred hHHHHHHhhhcceEEeecHH
Q psy10051 17 DRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt 36 (63)
+.+.+.+.+++|+++|++|-
T Consensus 3 ~~l~~~L~~~GV~~vFgvpG 22 (575)
T TIGR02720 3 AAVLKVLEAWGVDHIYGIPG 22 (575)
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 56889999999999999875
No 209
>PRK08611 pyruvate oxidase; Provisional
Probab=28.61 E-value=47 Score=22.34 Aligned_cols=22 Identities=9% Similarity=0.433 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+++|++.|++|--
T Consensus 7 ~~~l~~~L~~~GV~~vFgipG~ 28 (576)
T PRK08611 7 GEALVKLLQDWGIDHVYGIPGD 28 (576)
T ss_pred HHHHHHHHHHcCCCEEEecCCc
Confidence 5778999999999999998643
No 210
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=28.53 E-value=48 Score=22.04 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=18.1
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+++++|++.|++|
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~p 23 (548)
T PRK08978 4 AQWVVHALRAQGVDTVFGYP 23 (548)
T ss_pred HHHHHHHHHHcCCCEEEeCC
Confidence 56789999999999999988
No 211
>PRK08617 acetolactate synthase; Reviewed
Probab=28.50 E-value=48 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+.+|+.+|++|--
T Consensus 8 ~~~l~~~L~~~GV~~vFg~pG~ 29 (552)
T PRK08617 8 ADLVVDSLINQGVKYVFGIPGA 29 (552)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc
Confidence 6778999999999999997643
No 212
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=27.88 E-value=47 Score=16.88 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=6.8
Q ss_pred eEeecCCCCCCChhHH
Q psy10051 4 GRKFEGTPFHPGNDRY 19 (63)
Q Consensus 4 ~vl~~g~p~~~d~~~~ 19 (63)
+|.++|+|. ++++.+
T Consensus 4 LV~FPgAPk-vs~EAv 18 (81)
T PF07830_consen 4 LVCFPGAPK-VSEEAV 18 (81)
T ss_dssp EEE-TTS-----HHHH
T ss_pred EEecCCCCC-CCHHHH
Confidence 578888886 566543
No 213
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.75 E-value=93 Score=17.48 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=24.7
Q ss_pred CCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 9 GTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 9 g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
|++..|.-|...+++....|+ ...|+.++.-++..
T Consensus 78 Gga~~FKmEaaIQL~~~~~V~--lvs~~~ik~~lKrn 112 (138)
T PF11215_consen 78 GGAVGFKMEAAIQLIDDVEVE--LVSPATIKAQLKRN 112 (138)
T ss_pred CCchhHHHHHHHHhcCCCcEE--EECHHHHHHHHhcC
Confidence 444557888888888766655 45799888777653
No 214
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=27.66 E-value=54 Score=22.02 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+..|++|-
T Consensus 5 ~~~l~~~L~~~GV~~vFGipG 25 (579)
T TIGR03457 5 SEAFVEVLVANGVTHAFGIMG 25 (579)
T ss_pred HHHHHHHHHHCCCCEEEEccC
Confidence 467889999999999999983
No 215
>PRK11269 glyoxylate carboligase; Provisional
Probab=27.41 E-value=51 Score=22.21 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.7
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+.+|++.|++|-
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~pG 27 (591)
T PRK11269 7 VDAAVLVLEKEGVTTAFGVPG 27 (591)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 678899999999999999865
No 216
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=27.31 E-value=36 Score=16.75 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.8
Q ss_pred CChhHHHHHHhhhcceEEeecH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~P 35 (63)
+++..+-+++++..+...+|-|
T Consensus 5 l~~~~y~dvv~ER~~~~~CGYp 26 (79)
T PF04181_consen 5 LQPSDYDDVVEERNINGLCGYP 26 (79)
T ss_pred CCHHHHHHHHHHHHhCCCCCCc
Confidence 6899999999999999888877
No 217
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=27.00 E-value=1.5e+02 Score=17.67 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=28.4
Q ss_pred eEeecCCCCCCChhHHHHHHhhhcce-EEeecHHHHHHHHhcCC
Q psy10051 4 GRKFEGTPFHPGNDRYWSIVEKYKVN-QFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 4 ~vl~~g~p~~~d~~~~~~~i~~~~vT-~~~~~Pt~~~~l~~~~~ 46 (63)
+.+|+..|...+.+.+.+.+...++. +.+++|...+.+++..+
T Consensus 152 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~ 195 (248)
T COG1587 152 VEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAP 195 (248)
T ss_pred EeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHcc
Confidence 44666555444556666777777776 55778888888877643
No 218
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=26.97 E-value=53 Score=22.12 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.9
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+.+++|+++|++|
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~p 23 (586)
T PRK06276 4 AEAIIKALEAEGVKIIFGYP 23 (586)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 56788999999999999987
No 219
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=26.72 E-value=49 Score=20.23 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=14.4
Q ss_pred CChhHHHHHHhhhcceEEeecHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.|++.+++.+++++.|+.+..|..
T Consensus 214 ~d~~~~~~~~~~~~~t~CG~~pi~ 237 (276)
T PF01875_consen 214 LDPEGFYEYLKETNNTACGRGPIA 237 (276)
T ss_dssp T-HHHHHHHHHHH----TTHHHHH
T ss_pred cCHHHHHHHHHHcCCceechHHHH
Confidence 489999999999999965554543
No 220
>PRK05858 hypothetical protein; Provisional
Probab=26.67 E-value=54 Score=21.82 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|+..|++|--
T Consensus 8 ~~~l~~~L~~~GV~~vFg~pG~ 29 (542)
T PRK05858 8 GRLAARRLKAHGVDTMFTLSGG 29 (542)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc
Confidence 5678899999999999998643
No 221
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=26.63 E-value=54 Score=21.85 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|++.|++|-
T Consensus 4 ~~~l~~~L~~~Gv~~vFgvpG 24 (558)
T TIGR00118 4 AEAIIESLKDEGVKTVFGYPG 24 (558)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 567899999999999999984
No 222
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=26.55 E-value=46 Score=21.79 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=19.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.|++.+-+.++++++..++++|+.
T Consensus 213 ~~~e~le~~~~~~~~k~~y~~P~~ 236 (459)
T COG1167 213 IDPEALEEALAQWKPKAVYVTPTF 236 (459)
T ss_pred CCHHHHHHHHhhcCCcEEEECCCC
Confidence 578888888888888888888864
No 223
>PHA01519 hypothetical protein
Probab=26.41 E-value=49 Score=17.97 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.6
Q ss_pred ChhHHHHHHhhhcceEEe
Q psy10051 15 GNDRYWSIVEKYKVNQFY 32 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~ 32 (63)
+|+..|.+|.+++|.+..
T Consensus 61 NPaDAWPII~enkIsi~~ 78 (115)
T PHA01519 61 DPSASWPIIEKHRISILD 78 (115)
T ss_pred ChhhhhhHHHHcceeeec
Confidence 799999999999999865
No 224
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=26.23 E-value=1.3e+02 Score=16.93 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=26.7
Q ss_pred eEeecCCCCCCCh-hHHHHHHhhhc----ceEEeecHHHHHHHHhcCC
Q psy10051 4 GRKFEGTPFHPGN-DRYWSIVEKYK----VNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 4 ~vl~~g~p~~~d~-~~~~~~i~~~~----vT~~~~~Pt~~~~l~~~~~ 46 (63)
.++..|.|++|+. ..+.+.+.+.+ +.+.-+++++-...-..+.
T Consensus 80 ~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~ 127 (210)
T PF00590_consen 80 VVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGI 127 (210)
T ss_dssp EEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTS
T ss_pred EEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcC
Confidence 4566799998875 44556677733 6777777776655555543
No 225
>KOG4174|consensus
Probab=26.14 E-value=75 Score=19.93 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=20.1
Q ss_pred CCChhHHHHHHhhhcceEEeecH
Q psy10051 13 HPGNDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 13 ~~d~~~~~~~i~~~~vT~~~~~P 35 (63)
|+|+..-.+.+++.+++++..+-
T Consensus 101 Y~~~~~nv~~Lk~lG~~I~h~Vd 123 (282)
T KOG4174|consen 101 YPDAKENVEALKRLGGTILHGVD 123 (282)
T ss_pred ccchHHHHHHHHHcCCceEeccc
Confidence 67888899999999999998763
No 226
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=25.78 E-value=59 Score=21.84 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG 33 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPG 33 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCC
Confidence 678899999999999999864
No 227
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.67 E-value=88 Score=17.69 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=22.0
Q ss_pred CCChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 13 HPGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 13 ~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
.++++.+++.+.+.+.++ ..+|+||.|.
T Consensus 41 hlSa~eI~~~L~~~~~~i--s~aTVYRtL~ 68 (169)
T PRK11639 41 AISAYDLLDLLREAEPQA--KPPTVYRALD 68 (169)
T ss_pred CCCHHHHHHHHHhhCCCC--CcchHHHHHH
Confidence 379999999999988763 3488898664
No 228
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.13 E-value=61 Score=21.72 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=18.2
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+.+.+|+++|++|
T Consensus 6 ~~~l~~~L~~~Gv~~vFgip 25 (563)
T PRK08527 6 SQMVCEALKEEGVKVVFGYP 25 (563)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 57789999999999999987
No 229
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=25.13 E-value=80 Score=15.28 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=11.0
Q ss_pred CChhHHHHHHhhhcc
Q psy10051 14 PGNDRYWSIVEKYKV 28 (63)
Q Consensus 14 ~d~~~~~~~i~~~~v 28 (63)
-+|+++.++|...+-
T Consensus 24 ~~Pe~Vi~iIN~lR~ 38 (63)
T PF03295_consen 24 EDPEEVINIINELRN 38 (63)
T ss_pred cCHHHHHHHHHHhhh
Confidence 378999888876443
No 230
>KOG1178|consensus
Probab=25.10 E-value=98 Score=23.04 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=25.8
Q ss_pred hhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+..+-+.+++++++.++..|++.+.++...
T Consensus 277 ~~~l~~~le~y~i~~~~~~~a~~~~l~~~~ 306 (1032)
T KOG1178|consen 277 PGQLASTLERYGITVSHLLPAMCQLLLAIL 306 (1032)
T ss_pred hhhHHHHHHhhhheeeeechhhhhhhhhhc
Confidence 688999999999999999999977666543
No 231
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=25.09 E-value=73 Score=13.59 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=9.1
Q ss_pred ceEeecCCCCCCChhHHHHHH
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIV 23 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i 23 (63)
.+.+|++ +.+++..+++
T Consensus 15 ~V~Vfd~----v~~~Ka~~im 31 (36)
T PF06200_consen 15 QVCVFDD----VPPDKAQEIM 31 (36)
T ss_pred EEEEeCC----CCHHHHHHHH
Confidence 4455555 4566655544
No 232
>PF10765 DUF2591: Protein of unknown function (DUF2591); InterPro: IPR019701 This entry is represented by Bacteriophage P22, NinX. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.72 E-value=76 Score=16.43 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=15.8
Q ss_pred ChhHHHHHHhhhcceEE
Q psy10051 15 GNDRYWSIVEKYKVNQF 31 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~ 31 (63)
+++.-|-+|+++++++.
T Consensus 57 nwada~PII~~~~I~l~ 73 (109)
T PF10765_consen 57 NWADAGPIIERNRISLS 73 (109)
T ss_pred CHHHhhHHHHHcCeEEE
Confidence 78999999999999986
No 233
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=24.42 E-value=63 Score=21.80 Aligned_cols=21 Identities=10% Similarity=0.089 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 13 ~~~l~~~L~~~GV~~vFgipG 33 (585)
T CHL00099 13 AFALIDSLVRHGVKHIFGYPG 33 (585)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 566899999999999999875
No 234
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=24.28 E-value=1.7e+02 Score=18.27 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=22.3
Q ss_pred ChhHHHHHHhhhcceEEeec--------HHHHHHHHhcCC
Q psy10051 15 GNDRYWSIVEKYKVNQFYTA--------PTAIRTLMKYGE 46 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~--------Pt~~~~l~~~~~ 46 (63)
-.-++++++++++|...+.+ |..++.+.+.+.
T Consensus 78 G~~RiLdlL~~~gv~aTffv~g~~~e~~P~~v~~i~~~GH 117 (297)
T TIGR03212 78 GFWRLLRLFTERGIPVTVFGVAMALARNPEAVAAMKEAGW 117 (297)
T ss_pred CHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCC
Confidence 35678999999999866654 555566666553
No 235
>PLN02470 acetolactate synthase
Probab=24.23 E-value=64 Score=21.76 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.2
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+++++|++.|++|--
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~ 37 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGG 37 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCc
Confidence 6788999999999999998654
No 236
>PRK00782 hypothetical protein; Provisional
Probab=24.22 E-value=1.2e+02 Score=18.43 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=20.3
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
-|++.+++.+.++++|..+..|...
T Consensus 202 ~d~~~l~~~~~~~~~~~CG~~pi~~ 226 (267)
T PRK00782 202 LDVDGFYDEIYRMNATACGYGPIAA 226 (267)
T ss_pred CCHHHHHHHHHhcCCceECHHHHHH
Confidence 3889999999999999877667554
No 237
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=24.12 E-value=1.2e+02 Score=18.64 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=16.4
Q ss_pred EeecCC--CCCCChhHHHHHHhhhc
Q psy10051 5 RKFEGT--PFHPGNDRYWSIVEKYK 27 (63)
Q Consensus 5 vl~~g~--p~~~d~~~~~~~i~~~~ 27 (63)
|+|.|. |+.++++++-+.+++++
T Consensus 213 v~Y~Gg~GP~~y~~~e~r~~L~~~~ 237 (237)
T PF00837_consen 213 VVYKGGPGPFGYSPEELREWLEKYK 237 (237)
T ss_pred EEEeCCCCCCcCCHHHHHHHHHhcC
Confidence 566655 44678999888888763
No 238
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=24.05 E-value=99 Score=19.45 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
.|.+.+.+.++++++|+.+-.|...
T Consensus 215 ~d~~g~~~~~~~~n~t~CG~gpi~~ 239 (279)
T COG1355 215 LDLDGFYELLERTNATMCGYGPIAV 239 (279)
T ss_pred cCHHHHHHHHHhcCCccccccHHHH
Confidence 4889999999999999887777654
No 239
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=23.87 E-value=1.7e+02 Score=20.00 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=25.9
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
|+-.|....|+.+.+++.|++.+....+..|-=-+.++
T Consensus 338 vi~ggqt~nPS~~dll~ai~~~~a~~V~iLPNn~nii~ 375 (530)
T TIGR03599 338 VIEGGQTMNPSTEDILKAIEKVNAKNVFVLPNNKNIIL 375 (530)
T ss_pred EEeCCCCCCCCHHHHHHHHHhCCCCeEEEecCCccHHH
Confidence 44444344578889999999999988887775433333
No 240
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=23.64 E-value=1.2e+02 Score=19.29 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=28.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
.+.+++...+++|+=|.-..+|..+...++.++
T Consensus 265 ~~~~k~~~~~~~yGNtsaAsiplaL~~~~~~g~ 297 (323)
T COG0332 265 IPEEKVVVTVDKYGNTSAASIPLALDEALREGR 297 (323)
T ss_pred CCHHHHhhHHHHhcccccchHHHHHHHHhhhCC
Confidence 378899999999999999999999988877654
No 241
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=23.39 E-value=53 Score=21.87 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.5
Q ss_pred CCCCCChhHHHHHHhhhcceEEee
Q psy10051 10 TPFHPGNDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 10 ~p~~~d~~~~~~~i~~~~vT~~~~ 33 (63)
+|+|-.-+.+++++.+|.||...+
T Consensus 202 NPlye~fD~lLeI~~~yDVtlSLG 225 (431)
T PRK13352 202 NPLYEHFDYLLEILKEYDVTLSLG 225 (431)
T ss_pred CchHHHHHHHHHHHHHhCeeeecc
Confidence 466657789999999999998654
No 242
>PRK08266 hypothetical protein; Provisional
Probab=23.05 E-value=68 Score=21.28 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhcceEEeecHHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
.+.+.+.+.+.+|++.|++|--
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~pG~ 28 (542)
T PRK08266 7 GEAIVAGLVAHGVDTVFGLPGA 28 (542)
T ss_pred HHHHHHHHHHcCCCEEEECCCc
Confidence 5778999999999999998643
No 243
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=22.76 E-value=85 Score=16.76 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=20.8
Q ss_pred ChhHHHHHHhhhcceEEee------cHHHHHHH
Q psy10051 15 GNDRYWSIVEKYKVNQFYT------APTAIRTL 41 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~------~Pt~~~~l 41 (63)
+..+..++++..++|-||. +|.=|..+
T Consensus 15 NvGkaiN~mad~GiTGFfl~eYrGvsPd~wkgf 47 (110)
T COG4075 15 NVGKAINIMADAGITGFFLHEYRGVSPDKWKGF 47 (110)
T ss_pred HHHHHHHHHHhcCcceEEEEEecCcChhHhcCc
Confidence 6678899999999999976 46655443
No 244
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=22.19 E-value=96 Score=15.93 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=16.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
++.+..++.+.+.+++....+|-++
T Consensus 45 P~~~~~l~~l~~~g~~~i~vvP~fL 69 (117)
T cd03414 45 PSLPEALERLRALGARRVVVLPYLL 69 (117)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechh
Confidence 4666667777767777777777554
No 245
>KOG4549|consensus
Probab=22.08 E-value=1.1e+02 Score=17.17 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=18.7
Q ss_pred CCChhHHHHHHhhhcceEEeec
Q psy10051 13 HPGNDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 13 ~~d~~~~~~~i~~~~vT~~~~~ 34 (63)
|.|..+++..+.+.+||.+.+.
T Consensus 46 Y~Di~rIL~dLk~~GVtl~~AS 67 (144)
T KOG4549|consen 46 YDDIRRILVDLKKLGVTLIHAS 67 (144)
T ss_pred ccchhHHHHHHHhcCcEEEEec
Confidence 4588899999999999988764
No 246
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=21.98 E-value=79 Score=15.28 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=10.3
Q ss_pred CCChhHHHHHHhhh
Q psy10051 13 HPGNDRYWSIVEKY 26 (63)
Q Consensus 13 ~~d~~~~~~~i~~~ 26 (63)
+|+++.+.++|+++
T Consensus 63 fP~~~~i~~~I~~~ 76 (76)
T PF10262_consen 63 FPDPDEIVQLIRDH 76 (76)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC
Confidence 47999999888764
No 247
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=21.69 E-value=1e+02 Score=17.08 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=13.7
Q ss_pred CChhHHHHHHhhhcceEEeec
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~ 34 (63)
++..-..+.+.++++|+++++
T Consensus 96 pS~~~~P~~l~~~Gv~~v~g~ 116 (147)
T PF04016_consen 96 PSAPLHPEALFDYGVTYVGGS 116 (147)
T ss_dssp CCGGS-GGGGCCTT-SEEEEE
T ss_pred cCchhhHHHHHhCCCCEEEEE
Confidence 566666777788888877664
No 248
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.41 E-value=1.7e+02 Score=17.10 Aligned_cols=28 Identities=4% Similarity=-0.025 Sum_probs=24.8
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTL 41 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l 41 (63)
.|++.+++...++++..++..|.++...
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~~~~~~~~ 48 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALTKGIARAY 48 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeChHHHHhc
Confidence 5899999999999999999999887664
No 249
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=21.29 E-value=52 Score=16.49 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=15.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTA 37 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~ 37 (63)
++.+..++.+.+.+++....+|-+
T Consensus 44 p~~~~~l~~l~~~g~~~v~vvPlf 67 (101)
T cd03416 44 PSLAEALDELAAQGATRIVVVPLF 67 (101)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeeE
Confidence 455666666666667766666644
No 250
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=21.25 E-value=75 Score=17.98 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=17.1
Q ss_pred CCChhHHHHHHhhhcceEEeec
Q psy10051 13 HPGNDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 13 ~~d~~~~~~~i~~~~vT~~~~~ 34 (63)
|+++...++.+++.++++++.+
T Consensus 39 Y~~~~~nl~~L~~~g~~V~~~V 60 (166)
T PF10354_consen 39 YPDAEENLEELRELGVTVLHGV 60 (166)
T ss_pred cccHHHHHHHHhhcCCccccCC
Confidence 3567778888888888888776
No 251
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=20.56 E-value=67 Score=21.37 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.3
Q ss_pred CCCCCChhHHHHHHhhhcceEEee
Q psy10051 10 TPFHPGNDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 10 ~p~~~d~~~~~~~i~~~~vT~~~~ 33 (63)
+|+|-.-+.+++++.+|.||...+
T Consensus 199 NPlye~fD~lLeI~~~yDVtlSLG 222 (423)
T TIGR00190 199 NPLYKNFDYILEIAKEYDVTLSLG 222 (423)
T ss_pred CchHHHHHHHHHHHHHhCeeeecc
Confidence 466656789999999999998654
No 252
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=20.20 E-value=1.2e+02 Score=14.36 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=15.7
Q ss_pred hhHHHHHHhhhcceEEeec
Q psy10051 16 NDRYWSIVEKYKVNQFYTA 34 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~ 34 (63)
..++++.+++++++.....
T Consensus 18 ~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 18 LAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred HHHHHHHHHHcCCeEEEEE
Confidence 5788999999999977654
Done!