Query psy10051
Match_columns 63
No_of_seqs 150 out of 1099
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 16:40:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ry2_A Acetyl-coenzyme A synth 98.9 6.9E-09 2.3E-13 67.0 6.6 58 2-59 331-388 (663)
2 1pg4_A Acetyl-COA synthetase; 98.8 1.1E-08 3.8E-13 65.8 5.6 58 2-59 325-382 (652)
3 2d1s_A Luciferase, luciferin 4 98.1 8.3E-06 2.8E-10 51.5 6.2 51 2-58 262-312 (548)
4 3rix_A Luciferase, luciferin 4 98.0 1E-05 3.5E-10 50.9 5.7 52 2-59 260-311 (550)
5 3ni2_A 4-coumarate:COA ligase; 98.0 1.5E-05 5.3E-10 50.0 6.2 52 2-59 250-301 (536)
6 3etc_A AMP-binding protein; ad 98.0 1.7E-05 5.9E-10 50.5 6.0 52 2-58 293-344 (580)
7 1t5h_X 4-chlorobenzoyl COA lig 97.9 1.7E-05 5.7E-10 49.5 5.3 53 2-58 223-275 (504)
8 1mdb_A 2,3-dihydroxybenzoate-A 97.9 8.4E-06 2.9E-10 51.3 3.8 51 2-58 251-301 (539)
9 3r44_A Fatty acyl COA syntheta 97.8 1.6E-05 5.5E-10 49.8 3.8 51 2-58 237-287 (517)
10 3o83_A Peptide arylation enzym 97.8 1.6E-05 5.5E-10 50.1 3.6 51 2-58 260-310 (544)
11 3g7s_A Long-chain-fatty-acid-- 97.8 2.9E-05 9.9E-10 48.9 4.2 40 2-45 247-286 (549)
12 3tsy_A Fusion protein 4-coumar 97.8 5.1E-05 1.8E-09 50.7 5.4 52 2-59 297-348 (979)
13 1v25_A Long-chain-fatty-acid-C 97.7 3.3E-05 1.1E-09 48.6 3.8 32 14-45 254-285 (541)
14 3c5e_A Acyl-coenzyme A synthet 97.7 0.00013 4.5E-09 46.3 6.1 52 2-58 274-325 (570)
15 3ipl_A 2-succinylbenzoate--COA 97.6 0.00013 4.4E-09 45.3 5.4 41 2-46 230-270 (501)
16 3qov_A Phenylacetate-coenzyme 97.5 7.2E-05 2.5E-09 45.8 3.6 38 3-44 158-195 (436)
17 3fce_A D-alanine--poly(phospho 97.4 7.8E-05 2.7E-09 46.5 2.6 43 14-58 222-264 (512)
18 3e7w_A D-alanine--poly(phospho 97.4 8.9E-05 3E-09 46.3 2.8 42 14-57 221-262 (511)
19 2y4o_A Phenylacetate-coenzyme 97.4 0.00015 5.1E-09 44.5 3.4 31 14-44 171-201 (443)
20 4gr5_A Non-ribosomal peptide s 97.4 0.00036 1.2E-08 44.2 5.1 42 2-45 280-321 (570)
21 3rg2_A Enterobactin synthase c 97.3 0.0004 1.4E-08 44.4 4.6 39 2-44 253-291 (617)
22 4fuq_A Malonyl COA synthetase; 97.3 0.00073 2.5E-08 42.2 5.7 49 2-58 223-271 (503)
23 2v7b_A Benzoate-coenzyme A lig 97.2 0.0008 2.7E-08 42.1 5.5 33 14-46 261-293 (529)
24 2y27_A Phenylacetate-coenzyme 97.2 0.00053 1.8E-08 42.0 4.6 31 14-44 169-199 (437)
25 4dg8_A PA1221; ANL superfamily 97.2 0.00065 2.2E-08 43.7 4.9 42 2-45 230-271 (620)
26 3ivr_A Putative long-chain-fat 97.2 0.00052 1.8E-08 42.7 4.2 32 14-45 235-266 (509)
27 3l8c_A D-alanine--poly(phospho 97.1 0.0011 3.7E-08 41.4 5.3 53 3-58 215-267 (521)
28 3kxw_A Saframycin MX1 syntheta 96.9 0.00062 2.1E-08 42.9 3.1 44 15-58 248-292 (590)
29 3hgu_A EHPF; phenazine, antibi 96.8 0.0025 8.6E-08 38.2 4.8 27 18-44 196-222 (369)
30 3gqw_A Fatty acid AMP ligase; 96.7 0.00044 1.5E-08 43.4 1.0 31 14-44 257-287 (576)
31 4gs5_A Acyl-COA synthetase (AM 96.7 0.0018 6.3E-08 39.0 3.6 37 19-58 115-151 (358)
32 3t5a_A Long-chain-fatty-acid-- 96.7 0.00081 2.8E-08 41.3 2.0 44 15-59 270-315 (480)
33 3nyq_A Malonyl-COA ligase; A/B 96.3 0.0067 2.3E-07 37.9 4.6 38 2-44 223-260 (505)
34 2vsq_A Surfactin synthetase su 95.8 0.011 3.9E-07 40.9 4.2 42 2-44 673-714 (1304)
35 1amu_A GRSA, gramicidin synthe 94.8 0.0064 2.2E-07 38.6 0.5 30 14-43 260-289 (563)
36 3ite_A SIDN siderophore synthe 94.3 0.016 5.6E-07 36.4 1.5 29 15-43 260-288 (562)
37 1rxd_A Protein tyrosine phosph 51.4 20 0.00067 18.4 3.2 26 8-33 21-46 (159)
38 3mw8_A Uroporphyrinogen-III sy 42.7 43 0.0015 18.6 4.3 41 4-44 149-190 (240)
39 4es6_A Uroporphyrinogen-III sy 41.9 45 0.0016 18.7 3.9 41 4-44 162-203 (254)
40 3hww_A 2-succinyl-5-enolpyruvy 41.1 13 0.00044 23.7 1.6 28 16-43 11-43 (556)
41 3lq1_A 2-succinyl-5-enolpyruvy 40.1 15 0.0005 23.6 1.8 28 16-43 14-46 (578)
42 2vk8_A Pyruvate decarboxylase 39.5 15 0.00052 23.3 1.8 21 16-36 7-27 (563)
43 1q6z_A BFD, BFDC, benzoylforma 39.0 16 0.00054 23.1 1.8 21 16-36 5-25 (528)
44 3o3m_A Alpha subunit 2-hydroxy 38.5 29 0.00098 21.4 2.8 28 5-32 260-287 (408)
45 3eya_A Pyruvate dehydrogenase 38.3 16 0.00056 23.2 1.8 20 16-35 6-25 (549)
46 2q28_A Oxalyl-COA decarboxylas 37.7 17 0.00058 23.1 1.8 21 16-36 11-31 (564)
47 2vbi_A Pyruvate decarboxylase; 36.7 18 0.0006 23.1 1.7 21 16-36 6-26 (566)
48 4feg_A Pyruvate oxidase; carba 36.7 18 0.00061 23.4 1.8 28 16-43 14-46 (603)
49 3p9a_A DNA-packaging protein G 36.5 24 0.00083 19.5 2.1 16 11-26 20-35 (162)
50 2wvg_A PDC, pyruvate decarboxy 35.5 19 0.00064 23.0 1.7 21 16-36 6-26 (568)
51 1ovm_A Indole-3-pyruvate decar 35.3 20 0.00067 22.8 1.8 21 16-36 8-28 (552)
52 2x7j_A 2-succinyl-5-enolpyruvy 35.2 20 0.00067 23.2 1.8 21 16-36 34-54 (604)
53 2c31_A Oxalyl-COA decarboxylas 35.2 20 0.00067 22.9 1.8 21 16-36 13-33 (568)
54 1t9b_A Acetolactate synthase, 34.7 20 0.00068 23.7 1.8 21 16-36 85-105 (677)
55 2vbf_A Branched-chain alpha-ke 34.2 21 0.00071 22.8 1.8 21 16-36 28-48 (570)
56 2cc0_A Acetyl-xylan esterase; 33.3 60 0.0021 17.5 5.6 41 5-46 9-57 (195)
57 1ybh_A Acetolactate synthase, 33.0 21 0.0007 23.0 1.6 21 16-36 15-35 (590)
58 3s4o_A Protein tyrosine phosph 33.0 50 0.0017 16.9 3.0 25 9-33 29-53 (167)
59 2iht_A Carboxyethylarginine sy 32.5 23 0.00079 22.6 1.8 22 15-36 14-35 (573)
60 2pgn_A Cyclohexane-1,2-dione h 32.4 22 0.00074 22.9 1.6 21 16-36 7-27 (589)
61 2nxw_A Phenyl-3-pyruvate decar 32.3 19 0.00064 23.0 1.4 22 15-36 23-44 (565)
62 2uz1_A Benzaldehyde lyase; thi 32.0 19 0.00066 22.9 1.4 21 16-36 7-27 (563)
63 1ozh_A ALS, acetolactate synth 31.5 23 0.00078 22.6 1.7 21 16-36 14-34 (566)
64 4ets_A Ferric uptake regulatio 30.2 41 0.0014 18.0 2.3 28 13-42 48-77 (162)
65 2xig_A Ferric uptake regulatio 30.1 39 0.0013 17.7 2.2 27 14-42 43-69 (150)
66 1v5e_A Pyruvate oxidase; oxido 30.1 27 0.00091 22.5 1.8 21 16-36 7-27 (590)
67 3eyy_A Putative iron uptake re 30.0 36 0.0012 17.8 2.1 27 14-42 34-60 (145)
68 2fe3_A Peroxide operon regulat 29.7 48 0.0017 17.2 2.5 27 14-42 38-64 (145)
69 1mzb_A Ferric uptake regulatio 29.6 45 0.0015 17.1 2.4 27 14-42 35-61 (136)
70 2pan_A Glyoxylate carboligase; 28.4 30 0.001 22.4 1.8 21 16-36 30-50 (616)
71 3rz2_A Protein tyrosine phosph 24.7 88 0.003 16.7 3.9 23 11-33 45-67 (189)
72 2o03_A Probable zinc uptake re 24.2 41 0.0014 17.1 1.6 27 14-42 27-53 (131)
73 4aaj_A N-(5'-phosphoribosyl)an 24.0 87 0.003 17.9 3.1 25 4-28 46-70 (228)
74 2w57_A Ferric uptake regulatio 23.3 43 0.0015 17.6 1.6 27 14-42 34-60 (150)
75 2b7e_A PRE-mRNA processing pro 22.7 68 0.0023 14.6 2.2 29 17-45 7-36 (59)
76 2d1p_A TUSD, hypothetical UPF0 22.5 95 0.0032 16.2 3.1 26 14-39 70-96 (140)
77 1t1v_A SH3BGRL3, SH3 domain-bi 22.2 73 0.0025 14.8 3.4 29 1-30 1-35 (93)
78 2y8u_A Chitin deacetylase; hyd 21.3 1.2E+02 0.0041 17.0 3.4 41 5-46 37-85 (230)
79 2vyo_A ECU11_0510, chitooligos 20.4 1.1E+02 0.0037 17.4 3.0 42 5-46 30-81 (254)
80 1jx7_A Hypothetical protein YC 20.4 88 0.003 15.0 2.9 25 14-38 59-83 (117)
81 3zzx_A Thioredoxin; oxidoreduc 20.3 74 0.0025 15.3 2.0 14 14-27 92-105 (105)
82 1ny1_A Probable polysaccharide 20.3 1.3E+02 0.0044 16.9 5.2 31 16-46 58-96 (240)
83 3ffy_A Putative tetrapyrrole ( 20.2 97 0.0033 15.5 2.7 7 3-9 45-51 (115)
No 1
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=98.86 E-value=6.9e-09 Score=66.99 Aligned_cols=58 Identities=40% Similarity=0.698 Sum_probs=47.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
++++++++.|.+++++++|++|++++||+++++|++++.|++.+......+++++++.
T Consensus 331 ~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~ 388 (663)
T 1ry2_A 331 CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC 388 (663)
T ss_dssp SEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCE
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEE
Confidence 5788999888778999999999999999999999999999987643234567776554
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=98.78 E-value=1.1e-08 Score=65.79 Aligned_cols=58 Identities=36% Similarity=0.503 Sum_probs=46.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
++++++++.|.+++++.+|++|+++++|+++++|++++.|++.+......+++++++.
T Consensus 325 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~ 382 (652)
T 1pg4_A 325 ATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI 382 (652)
T ss_dssp CEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCE
T ss_pred ceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEE
Confidence 5788999878778999999999999999999999999999986532123456666554
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.11 E-value=8.3e-06 Score=51.48 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=39.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++.+. ++++.+++.|+++++|+++++|++++.|.+.+. ....++++++
T Consensus 262 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr 312 (548)
T 2d1s_A 262 FRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLSNLV 312 (548)
T ss_dssp CEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCTTCC
T ss_pred cEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccccee
Confidence 35566654 799999999999999999999999999988654 2345565544
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=98.05 E-value=1e-05 Score=50.95 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=41.0
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+++++.+. ++++.+++.|+++++|+++++|++++.|.+... ....++++++.
T Consensus 260 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~ 311 (550)
T 3rix_A 260 FRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNLHE 311 (550)
T ss_dssp CEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTTCCE
T ss_pred CEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCcccccE
Confidence 45566654 799999999999999999999999999998754 34456666543
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=98.02 E-value=1.5e-05 Score=50.02 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=41.1
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+++++.+. ++++.+++.|+++++|++.++|+++..+.+.+. ....++++++.
T Consensus 250 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~ 301 (536)
T 3ni2_A 250 APILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRM 301 (536)
T ss_dssp CCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCE
T ss_pred CEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceE
Confidence 45666654 799999999999999999999999999988754 34556666543
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=97.99 E-value=1.7e-05 Score=50.48 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=38.4
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++++.. .|+++.+++.|+++++|+++++|++++.|++.. ....++++++
T Consensus 293 ~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~l~~lr 344 (580)
T 3etc_A 293 CAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHYNFSTLK 344 (580)
T ss_dssp CEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---CCTTCC
T ss_pred cEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccCCCccce
Confidence 345566422 279999999999999999999999999998764 2445666654
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=97.95 E-value=1.7e-05 Score=49.49 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=38.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++.+. ++++.+++.|+++++|+++++|++++.|.+.........++++++
T Consensus 223 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr 275 (504)
T 1t5h_X 223 GTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275 (504)
T ss_dssp CEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCC
T ss_pred ceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCcccc
Confidence 34555554 799999999999999999999999999987542101234555544
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=97.94 E-value=8.4e-06 Score=51.31 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=38.4
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++.+. ++++.+++.|+++++|+++++|+++..+++... ....++++++
T Consensus 251 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr 301 (539)
T 1mdb_A 251 GRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQ 301 (539)
T ss_dssp CEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCC
T ss_pred CEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCcccee
Confidence 45566654 799999999999999999999999999886532 1234555543
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=97.83 E-value=1.6e-05 Score=49.80 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=39.0
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++.+. ++++.+|+.|+++++|+++++|++++.|.+.+. ....++++++
T Consensus 237 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 287 (517)
T 3r44_A 237 VTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFR 287 (517)
T ss_dssp CEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCC
T ss_pred eEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCccc
Confidence 35566654 799999999999999999999999999987643 2334555443
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=97.81 E-value=1.6e-05 Score=50.08 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=38.5
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++.+. +++..+++.|+++++|+++++|++++.+++... ....++++++
T Consensus 260 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 310 (544)
T 3o83_A 260 GCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA--QYKDQIQSLK 310 (544)
T ss_dssp CEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT--TTHHHHTTCC
T ss_pred CEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchh--hccccCCcce
Confidence 35556554 799999999999999999999999999887643 2233444443
No 11
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=97.77 E-value=2.9e-05 Score=48.91 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=34.1
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.+. ++++.+++.|+++++|+++++|++++.|++..
T Consensus 247 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 286 (549)
T 3g7s_A 247 NEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTL 286 (549)
T ss_dssp CEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred ceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhh
Confidence 35566654 79999999999999999999999999988753
No 12
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=97.76 E-value=5.1e-05 Score=50.73 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=40.4
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN 59 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~ 59 (63)
+++++.+. ++++.+++.|+++++|+++++|+++..|.+... ....++++++.
T Consensus 297 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~ 348 (979)
T 3tsy_A 297 AAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRV 348 (979)
T ss_dssp CEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCE
T ss_pred cEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEE
Confidence 35566554 799999999999999999999999999987754 24456665543
No 13
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=97.71 E-value=3.3e-05 Score=48.63 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=29.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.|+++++|+++++|+++..|.+..
T Consensus 254 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 285 (541)
T 1v25_A 254 LDPASLVELFDGEGVTFTAGVPTVWLALADYL 285 (541)
T ss_dssp CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCeeEEecchHHHHHHHhhh
Confidence 69999999999999999999999999888653
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=97.67 E-value=0.00013 Score=46.32 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=38.9
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++.+. + .++++.+++.|+++++|+++++|++++.|++.+. ...++++++
T Consensus 274 ~~~~~~~~-~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~lr 325 (570)
T 3c5e_A 274 ACTFVHLL-P-KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL---SSYKFPHLQ 325 (570)
T ss_dssp CEEEEECC-S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT---TTCCCTTCC
T ss_pred ceEEEecC-C-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc---cccccccce
Confidence 34555553 2 2799999999999999999999999999987632 334555543
No 15
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=97.61 E-value=0.00013 Score=45.33 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=35.3
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
+++++.+. ++++.+++.|+++++|+++++|++++.|++.+.
T Consensus 230 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 270 (501)
T 3ipl_A 230 FTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGL 270 (501)
T ss_dssp CEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC
T ss_pred ceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC
Confidence 45666654 799999999999999999999999999988654
No 16
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=97.55 E-value=7.2e-05 Score=45.81 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=32.2
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++.++ ++++.+++.|+++++|+++++|+++..|.+.
T Consensus 158 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 158 LTVPAAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp EEECCCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred EEEeCCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 4444444 6999999999999999999999999988865
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=97.42 E-value=7.8e-05 Score=46.50 Aligned_cols=43 Identities=5% Similarity=0.091 Sum_probs=34.4
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
++++.+++.|+++++|++.++|+++..++.... ....++++++
T Consensus 222 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 264 (512)
T 3fce_A 222 ARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMK 264 (512)
T ss_dssp HSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCC
T ss_pred hCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCcccc
Confidence 489999999999999999999999999887654 2344555543
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=97.42 E-value=8.9e-05 Score=46.29 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=33.7
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD 57 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l 57 (63)
++++.+++.|+++++|++.++|++++.+++.+. ....+++++
T Consensus 221 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l 262 (511)
T 3e7w_A 221 NKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHA 262 (511)
T ss_dssp HSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTC
T ss_pred cCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcc
Confidence 489999999999999999999999999987654 233445443
No 19
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=97.37 E-value=0.00015 Score=44.49 Aligned_cols=31 Identities=6% Similarity=0.249 Sum_probs=28.8
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++.+++.|+++++|+++++|+++..|.+.
T Consensus 171 ~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 171 GQTEKQVQLIRDFEPKIILVTPSYMLNLIDE 201 (443)
T ss_dssp CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence 5999999999999999999999999988764
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=97.35 E-value=0.00036 Score=44.17 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=34.5
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.++. .+++..+++.|+++++|++.++|++++.|++..
T Consensus 280 ~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 321 (570)
T 4gr5_A 280 ARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEV 321 (570)
T ss_dssp CEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC
T ss_pred CEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc
Confidence 345666542 269999999999999999999999999998753
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=97.27 E-value=0.0004 Score=44.39 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=33.2
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.+. +++..+++.|+++++|+++++|++++.+++.
T Consensus 253 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 253 GTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp CEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred CEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 45566554 6999999999999999999999999988764
No 22
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=97.27 E-value=0.00073 Score=42.19 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=36.6
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
+++++.+. ++++.+++.++ ++|+++++|+++..+++.+. ....++++++
T Consensus 223 ~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 271 (503)
T 4fuq_A 223 GSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMR 271 (503)
T ss_dssp CEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCC
T ss_pred CEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcE
Confidence 34555554 79999999998 89999999999999988754 2334455543
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=97.23 E-value=0.0008 Score=42.11 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=30.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~ 46 (63)
++++.+++.|+++++|+++++|+++..+++...
T Consensus 261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 293 (529)
T 2v7b_A 261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPN 293 (529)
T ss_dssp CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT
T ss_pred CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc
Confidence 799999999999999999999999999887643
No 24
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=97.22 E-value=0.00053 Score=41.98 Aligned_cols=31 Identities=3% Similarity=0.255 Sum_probs=28.8
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
++++.+++.|+++++|+++++|+++..|.+.
T Consensus 169 ~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 169 GQTEKQVQLIQDFRPDIIMVTPSYMLSIADE 199 (437)
T ss_dssp CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 5999999999999999999999999988764
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=97.18 E-value=0.00065 Score=43.72 Aligned_cols=42 Identities=7% Similarity=0.035 Sum_probs=34.1
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
+++++.+..+ ++++.+++.|+++++|+++++|++++.|.+..
T Consensus 230 ~~~v~~~~~~--~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~ 271 (620)
T 4dg8_A 230 GCCVLNDLGP--LDPGVLRQLIGERGADSAWLTASLFNTLVDLD 271 (620)
T ss_dssp CEEEECCSSS--CCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC
T ss_pred CEEEeCcccc--CCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC
Confidence 4556654322 69999999999999999999999999988653
No 26
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=97.16 E-value=0.00052 Score=42.74 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=30.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~ 45 (63)
++++.+++.|+++++|+++++|+++..+++..
T Consensus 235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 266 (509)
T 3ivr_A 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQA 266 (509)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC
T ss_pred cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc
Confidence 79999999999999999999999999998765
No 27
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=97.11 E-value=0.0011 Score=41.36 Aligned_cols=53 Identities=6% Similarity=0.062 Sum_probs=37.7
Q ss_pred ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
++++.+. ....++..+++.|+++++|++.++|+++..++.... ....++++++
T Consensus 215 ~~~~~~~-~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 267 (521)
T 3l8c_A 215 TLFALPK-ELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALT 267 (521)
T ss_dssp EEEECCG-GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCC
T ss_pred EEEEcCH-HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccce
Confidence 4444443 222489999999999999999999999998887654 2334555443
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=96.93 E-value=0.00062 Score=42.94 Aligned_cols=44 Identities=11% Similarity=-0.048 Sum_probs=33.1
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHhcCCC-CCccccCCccc
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEG-PVQKHEVELDS 58 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~-~~~~~dl~~l~ 58 (63)
++..+++.|+++++|+++++|+++..+.+.... .....++++++
T Consensus 248 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr 292 (590)
T 3kxw_A 248 NPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWV 292 (590)
T ss_dssp CTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCC
T ss_pred CHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhH
Confidence 789999999999999999999999988765221 12334555544
No 29
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=96.79 E-value=0.0025 Score=38.19 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=25.0
Q ss_pred HHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 18 RYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 18 ~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
.+++.|+++++|+++++|+++..|.+.
T Consensus 196 ~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 222 (369)
T 3hgu_A 196 QVQNTLMNQDIRFLVTTPPVLRELLKR 222 (369)
T ss_dssp HHHHHHHHSCEEEEEECHHHHHHHTTC
T ss_pred HHHHHHHhCCCCEEEeCHHHHHHHHhh
Confidence 888899999999999999999998765
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=96.70 E-value=0.00044 Score=43.41 Aligned_cols=31 Identities=6% Similarity=0.031 Sum_probs=28.0
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++..+++.|+++++|+++++|+++..+.+.
T Consensus 257 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 287 (576)
T 3gqw_A 257 MRPLQWLKLISKNRGTVSVAPPFGYELCQRR 287 (576)
T ss_dssp HCTTHHHHHHHHTTCCEEEECHHHHHHHHHS
T ss_pred hCHHHHHHHHHHhCCeEEEcCHHHHHHHHHH
Confidence 4889999999999999999999999887654
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=96.66 E-value=0.0018 Score=39.02 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=29.0
Q ss_pred HHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051 19 YWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS 58 (63)
Q Consensus 19 ~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~ 58 (63)
.++.|+++++|+++++|++++.|++... ...++++++
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~---~~~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSA---TSGQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTT---TGGGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhcccc---ccccCCcce
Confidence 4678999999999999999999998754 234555544
No 32
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=96.66 E-value=0.00081 Score=41.32 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=31.2
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHhcCC--CCCccccCCcccc
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE--GPVQKHEVELDSN 59 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~--~~~~~~dl~~l~~ 59 (63)
+++.+++.|+++++| +.++|+++..++.... ......++++++.
T Consensus 270 ~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~ 315 (480)
T 3t5a_A 270 RPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILT 315 (480)
T ss_dssp CTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCE
T ss_pred CHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhhe
Confidence 899999999999999 7888888877765311 0123456666543
No 33
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=96.31 E-value=0.0067 Score=37.93 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=31.3
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.+. ++++.+++.+ ++++|+++++|+++..+++.
T Consensus 223 ~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~ 260 (505)
T 3nyq_A 223 GSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAET 260 (505)
T ss_dssp CEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHH
T ss_pred CEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHh
Confidence 34555544 7999999999 88999999999999988763
No 34
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=95.81 E-value=0.011 Score=40.88 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=33.7
Q ss_pred CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051 2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44 (63)
Q Consensus 2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~ 44 (63)
+++++.+.. ..+|++.+++.|++++||+++++|++++.+.+.
T Consensus 673 ~~l~~~~~~-~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~ 714 (1304)
T 2vsq_A 673 ARLIIADEH-TLLDTERLTDLILQENVNVMFATTALFNLLTDA 714 (1304)
T ss_dssp CEEEECCGG-GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred CEEEECChh-hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence 455555432 226999999999999999999999999998765
No 35
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=94.80 E-value=0.0064 Score=38.59 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=26.7
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
+++..+++.|+++++|+++++|+++..+..
T Consensus 260 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 289 (563)
T 1amu_A 260 NDFVKFEQYINQKEITVITLPPTYVVHLDP 289 (563)
T ss_dssp TCHHHHHHHHHHTTCCEEEECHHHHTTSCT
T ss_pred cCHHHHHHHHHHcCCcEEEeCHHHHHHHHh
Confidence 489999999999999999999999876643
No 36
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=94.30 E-value=0.016 Score=36.44 Aligned_cols=29 Identities=10% Similarity=-0.061 Sum_probs=24.8
Q ss_pred ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~ 43 (63)
.++.+++.++++++|+++++|++++.+..
T Consensus 260 ~~~~~~~~i~~~~~t~~~~~P~~l~~~~~ 288 (562)
T 3ite_A 260 MLDDLPRTFRELGVTHAGIVPSLLDQTGL 288 (562)
T ss_dssp HHHSHHHHHHHTTCCEEEECHHHHHHHTC
T ss_pred CHHHHHHHHHHcCCCEEEcCHHHHhhccc
Confidence 35778999999999999999999877643
No 37
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=51.39 E-value=20 Score=18.36 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=19.1
Q ss_pred cCCCCCCChhHHHHHHhhhcceEEee
Q psy10051 8 EGTPFHPGNDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 8 ~g~p~~~d~~~~~~~i~~~~vT~~~~ 33 (63)
.+.|..-+.+.+|+.+.+++++....
T Consensus 21 s~~p~~~t~~df~~~l~~~gi~~Iv~ 46 (159)
T 1rxd_A 21 THNPTNATLNKFIEELKKYGVTTIVR 46 (159)
T ss_dssp CCCCCGGGHHHHHHHHHHTTEEEEEE
T ss_pred eCCCccccHHHHHHHHHHcCCCEEEE
Confidence 34455445678899999999997754
No 38
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=42.70 E-value=43 Score=18.61 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=26.6
Q ss_pred eEeecCCCCCCChhHHHHHHhhhcce-EEeecHHHHHHHHhc
Q psy10051 4 GRKFEGTPFHPGNDRYWSIVEKYKVN-QFYTAPTAIRTLMKY 44 (63)
Q Consensus 4 ~vl~~g~p~~~d~~~~~~~i~~~~vT-~~~~~Pt~~~~l~~~ 44 (63)
+.+|+..+...+++.+.+.+...++. +.+++|..++.+.+.
T Consensus 149 ~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~ 190 (240)
T 3mw8_A 149 LEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINL 190 (240)
T ss_dssp EEEEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHH
T ss_pred EEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHH
Confidence 45666444324566677777666654 667888888877764
No 39
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=41.94 E-value=45 Score=18.72 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=23.7
Q ss_pred eEeecCCCCCCChhHHHHHHhhhcce-EEeecHHHHHHHHhc
Q psy10051 4 GRKFEGTPFHPGNDRYWSIVEKYKVN-QFYTAPTAIRTLMKY 44 (63)
Q Consensus 4 ~vl~~g~p~~~d~~~~~~~i~~~~vT-~~~~~Pt~~~~l~~~ 44 (63)
+.+|+..+...+.+.+.+.+...++. +.+++|..++.+.+.
T Consensus 162 ~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~ 203 (254)
T 4es6_A 162 LPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQL 203 (254)
T ss_dssp EECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHH
T ss_pred EeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHH
Confidence 34555433323456666666655554 567778777766653
No 40
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=41.15 E-value=13 Score=23.74 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=21.6
Q ss_pred hhHHHHHHhhhcceEEeecH-----HHHHHHHh
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP-----TAIRTLMK 43 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P-----t~~~~l~~ 43 (63)
++.+.+.+.+++|+++|++| .++..+.+
T Consensus 11 a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~ 43 (556)
T 3hww_A 11 AAVILEALTRHGVRHICIAPGSRSTLLTLAAAE 43 (556)
T ss_dssp HHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhh
Confidence 46688999999999999987 34555544
No 41
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=40.15 E-value=15 Score=23.60 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=21.4
Q ss_pred hhHHHHHHhhhcceEEeecH-----HHHHHHHh
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP-----TAIRTLMK 43 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P-----t~~~~l~~ 43 (63)
.+.+.+.+++++|+.+|++| .++..+.+
T Consensus 14 a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~ 46 (578)
T 3lq1_A 14 LAAFIEELVQAGVKEAIISPGSRSTPLALMMAE 46 (578)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCccHHHHHHHHh
Confidence 45688999999999999987 34455544
No 42
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=39.48 E-value=15 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 7 a~~l~~~L~~~GV~~vfg~PG 27 (563)
T 2vk8_A 7 GKYLFERLKQVNVNTVFGLPG 27 (563)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEcCC
Confidence 577899999999999999875
No 43
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=39.03 E-value=16 Score=23.08 Aligned_cols=21 Identities=5% Similarity=0.382 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 5 a~~l~~~L~~~GV~~vfg~PG 25 (528)
T 1q6z_A 5 HGTTYELLRRQGIDTVFGNPG 25 (528)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEECCC
Confidence 567899999999999999884
No 44
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=38.51 E-value=29 Score=21.43 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=21.8
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEEe
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFY 32 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~~ 32 (63)
|++.|.|.++....+++.+++.++.+.+
T Consensus 260 il~~G~p~~~~~~~l~~~le~~G~~vV~ 287 (408)
T 3o3m_A 260 IMMEGIPCWPYIGYKMKTLAKFGVNMTG 287 (408)
T ss_dssp EEEESCCCGGGHHHHHHHHHHHTEEEEE
T ss_pred EEEECCCCcccHHHHHHHHHhCCCEEEE
Confidence 5677877655667899999999998764
No 45
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=38.25 E-value=16 Score=23.18 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=17.8
Q ss_pred hhHHHHHHhhhcceEEeecH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP 35 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P 35 (63)
.+.+.+.+.+++|++.|++|
T Consensus 6 a~~l~~~L~~~GV~~vfg~P 25 (549)
T 3eya_A 6 AAYIAKTLESAGVKRIWGVT 25 (549)
T ss_dssp HHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHCCCCEEEEcC
Confidence 56789999999999999987
No 46
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=37.71 E-value=17 Score=23.14 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=18.7
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 11 a~~l~~~L~~~GV~~vfg~PG 31 (564)
T 2q28_A 11 MHIIVEALKQNNIDTIYGVVG 31 (564)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 577899999999999999875
No 47
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=36.74 E-value=18 Score=23.11 Aligned_cols=21 Identities=0% Similarity=-0.028 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+.+|++|-
T Consensus 6 a~~l~~~L~~~GV~~vfg~PG 26 (566)
T 2vbi_A 6 GMYLAERLVQIGLKHHFAVAG 26 (566)
T ss_dssp HHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 577899999999999999864
No 48
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=36.73 E-value=18 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=22.1
Q ss_pred hhHHHHHHhhhcceEEeecH-----HHHHHHHh
Q psy10051 16 NDRYWSIVEKYKVNQFYTAP-----TAIRTLMK 43 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~P-----t~~~~l~~ 43 (63)
.+.+.+.+.+++|++.|++| .++..|.+
T Consensus 14 a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~ 46 (603)
T 4feg_A 14 GAAVIKVLEAWGVDHLYGIPGGSINSIMDALSA 46 (603)
T ss_dssp HHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHh
Confidence 56789999999999999987 44555554
No 49
>3p9a_A DNA-packaging protein GP3; terminase small subunit, bacteriophage P22, D binding protein; 1.75A {Enterobacteria phage P22}
Probab=36.53 E-value=24 Score=19.52 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=12.4
Q ss_pred CCCCChhHHHHHHhhh
Q psy10051 11 PFHPGNDRYWSIVEKY 26 (63)
Q Consensus 11 p~~~d~~~~~~~i~~~ 26 (63)
|.|-+|+.+|+++-+|
T Consensus 20 p~f~tPEeL~~aa~eY 35 (162)
T 3p9a_A 20 PKFESPEALWAACCEY 35 (162)
T ss_dssp CCCCSHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH
Confidence 4556899999988764
No 50
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=35.51 E-value=19 Score=22.98 Aligned_cols=21 Identities=0% Similarity=0.020 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 6 a~~l~~~L~~~GV~~vfg~PG 26 (568)
T 2wvg_A 6 GTYLAERLVQIGLKHHFAVAG 26 (568)
T ss_dssp HHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 567899999999999999873
No 51
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=35.30 E-value=20 Score=22.76 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 8 a~~l~~~L~~~GV~~vfg~PG 28 (552)
T 1ovm_A 8 ADYLLDRLTDCGADHLFGVPG 28 (552)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 677899999999999999764
No 52
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=35.22 E-value=20 Score=23.16 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+..|++|-
T Consensus 34 a~~lv~~L~~~GV~~vFg~PG 54 (604)
T 2x7j_A 34 IGSFIDEFALSGITDAVVCPG 54 (604)
T ss_dssp HHHHHHHHHHHTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEECcC
Confidence 577899999999999999864
No 53
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=35.17 E-value=20 Score=22.90 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 13 a~~l~~~L~~~GV~~vfg~PG 33 (568)
T 2c31_A 13 FHVLIDALKMNDIDTMYGVVG 33 (568)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 678899999999999999874
No 54
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=34.69 E-value=20 Score=23.69 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+.+|++|-
T Consensus 85 a~~lv~~L~~~GV~~vFg~PG 105 (677)
T 1t9b_A 85 GQIFNEMMSRQNVDTVFGYPG 105 (677)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEecC
Confidence 677899999999999999874
No 55
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=34.21 E-value=21 Score=22.80 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+.+|++|-
T Consensus 28 a~~l~~~L~~~GV~~vfg~PG 48 (570)
T 2vbf_A 28 GDYLLDRLHELGIEEIFGVPG 48 (570)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 688899999999999999764
No 56
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=33.28 E-value=60 Score=17.53 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=25.9
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEEee-c-------HHHHHHHHhcCC
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFYT-A-------PTAIRTLMKYGE 46 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~~~-~-------Pt~~~~l~~~~~ 46 (63)
+-+|..|. .....++++++++++...|. + |..++.+.+.+.
T Consensus 9 LTFDDG~~-~~~~~il~iL~~~~v~aTfFv~g~~~~~~~~~~~~~~~~Gh 57 (195)
T 2cc0_A 9 LTFDDGPS-GSTQSLLNALRQNGLRATMFNQGQYAAQNPSLVRAQVDAGM 57 (195)
T ss_dssp EEEESCCS-TTHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTC
T ss_pred EEEcCCCc-hhHHHHHHHHHHcCCCEEEEecChhhhhCHHHHHHHHHCCC
Confidence 45665554 24688999999999884443 3 344556665543
No 57
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=33.02 E-value=21 Score=22.96 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+.+|++|-
T Consensus 15 a~~l~~~L~~~GV~~vfg~PG 35 (590)
T 1ybh_A 15 ADILVEALERQGVETVFAYPG 35 (590)
T ss_dssp HHHHHHHHHTTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEcCC
Confidence 678899999999999999863
No 58
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=32.95 E-value=50 Score=16.90 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=18.6
Q ss_pred CCCCCCChhHHHHHHhhhcceEEee
Q psy10051 9 GTPFHPGNDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 9 g~p~~~d~~~~~~~i~~~~vT~~~~ 33 (63)
..|..-+.+..|+.+.+++++....
T Consensus 29 q~P~~~t~~~~~~~l~~~gi~~Iv~ 53 (167)
T 3s4o_A 29 DAPSPSNLPTYIKELQHRGVRHLVR 53 (167)
T ss_dssp CCCCGGGHHHHHHHHHTTTEEEEEE
T ss_pred CCCchhhHHHHHHHHHHCCCCEEEE
Confidence 3455335688999999999998753
No 59
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=32.46 E-value=23 Score=22.64 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=19.5
Q ss_pred ChhHHHHHHhhhcceEEeecHH
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt 36 (63)
-.+.+.+.+.+++|+..|++|-
T Consensus 14 ~a~~l~~~L~~~GV~~vfg~PG 35 (573)
T 2iht_A 14 AAHALLSRLRDHGVGKVFGVVG 35 (573)
T ss_dssp HHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHCCCCEEEEecC
Confidence 3688899999999999999985
No 60
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=32.37 E-value=22 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=18.2
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|++.|++|-
T Consensus 7 a~~l~~~L~~~GV~~vfg~PG 27 (589)
T 2pgn_A 7 ADLIVEALEEYGTEQVVGFIG 27 (589)
T ss_dssp HHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEEecC
Confidence 577899999999999998864
No 61
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=32.31 E-value=19 Score=23.03 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=19.0
Q ss_pred ChhHHHHHHhhhcceEEeecHH
Q psy10051 15 GNDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 15 d~~~~~~~i~~~~vT~~~~~Pt 36 (63)
-.+.+.+.+.+++|+.+|++|-
T Consensus 23 ~a~~lv~~L~~~GV~~vfg~PG 44 (565)
T 2nxw_A 23 LAEALLRALKDRGAQAMFGIPG 44 (565)
T ss_dssp HHHHHHHHHHHTTCCCEEECCC
T ss_pred HHHHHHHHHHHcCCCEEEECCC
Confidence 3788899999999999999764
No 62
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=31.97 E-value=19 Score=22.92 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=18.2
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 7 a~~l~~~L~~~GV~~vfg~PG 27 (563)
T 2uz1_A 7 GELVVRTLIKAGVEHLFGLHG 27 (563)
T ss_dssp HHHHHHHHHHHTCCCEEECCC
T ss_pred HHHHHHHHHHCCCCEEEECCC
Confidence 577899999999999999864
No 63
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=31.49 E-value=23 Score=22.64 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.7
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+.+|++|-
T Consensus 14 a~~l~~~L~~~GV~~vfg~PG 34 (566)
T 1ozh_A 14 ADLVVSQLEAQGVRQVFGIPG 34 (566)
T ss_dssp HHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHCCCCEEEEcCC
Confidence 678899999999999999874
No 64
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.25 E-value=41 Score=18.00 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=21.5
Q ss_pred CCChhHHHHHHhhh--cceEEeecHHHHHHHH
Q psy10051 13 HPGNDRYWSIVEKY--KVNQFYTAPTAIRTLM 42 (63)
Q Consensus 13 ~~d~~~~~~~i~~~--~vT~~~~~Pt~~~~l~ 42 (63)
.++++.+++.+.+. +.++ ..+|+||.|-
T Consensus 48 h~sA~eI~~~l~~~~~~~~i--s~aTVYRtL~ 77 (162)
T 4ets_A 48 HYTPESLYMEIKQAEPDLNV--GIATVYRTLN 77 (162)
T ss_dssp CBCHHHHHHHHHHHCGGGCC--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCCCCC--CHHHHHHHHH
Confidence 37999999999887 5553 4689998654
No 65
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.14 E-value=39 Score=17.74 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=21.2
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+...++ ..+|+||.|-
T Consensus 43 ~sa~ei~~~l~~~~~~i--s~aTVYR~L~ 69 (150)
T 2xig_A 43 LSPEEITHSIRQKDKNT--SISSVYRILN 69 (150)
T ss_dssp BCHHHHHHHHHHHSTTC--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCC--CHhhHHHHHH
Confidence 69999999998876653 4689998665
No 66
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=30.12 E-value=27 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+++|++|-
T Consensus 7 a~~lv~~L~~~GV~~vfg~PG 27 (590)
T 1v5e_A 7 GLAVMKILESWGADTIYGIPS 27 (590)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEecC
Confidence 577899999999999999884
No 67
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.97 E-value=36 Score=17.77 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=20.5
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+...++ ..+|+||.|-
T Consensus 34 ~ta~ei~~~l~~~~~~i--s~~TVYR~L~ 60 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGI--NISTVYRTLE 60 (145)
T ss_dssp BCHHHHHHHHHTTCTTC--CHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCC--CHhHHHHHHH
Confidence 68899999888776653 4688888654
No 68
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.65 E-value=48 Score=17.20 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=20.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+...++ ..+|+||.|-
T Consensus 38 ~sa~ei~~~l~~~~~~i--s~aTVYR~L~ 64 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNM--SVATVYNNLR 64 (145)
T ss_dssp CCHHHHHHHHGGGCTTC--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCC--ChhhHHHHHH
Confidence 69999999998876653 4688998654
No 69
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.55 E-value=45 Score=17.11 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=21.1
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+...++ ..+|+||.|-
T Consensus 35 ~sa~ei~~~l~~~~~~i--s~aTVYR~L~ 61 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDV--GLATVYRVLT 61 (136)
T ss_dssp BCHHHHHHHHHHTTCCC--CHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCC--CHHHHHHHHH
Confidence 68999999998876653 4688998654
No 70
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=28.38 E-value=30 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhcceEEeecHH
Q psy10051 16 NDRYWSIVEKYKVNQFYTAPT 36 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~~Pt 36 (63)
.+.+.+.+.+++|+.+|++|-
T Consensus 30 a~~l~~~L~~~GV~~vfg~PG 50 (616)
T 2pan_A 30 VDAAMYVLEKEGITTAFGVPG 50 (616)
T ss_dssp HHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEECCC
Confidence 577899999999999999864
No 71
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=24.74 E-value=88 Score=16.71 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.5
Q ss_pred CCCCChhHHHHHHhhhcceEEee
Q psy10051 11 PFHPGNDRYWSIVEKYKVNQFYT 33 (63)
Q Consensus 11 p~~~d~~~~~~~i~~~~vT~~~~ 33 (63)
|..-+.+..|+.+.+++|+....
T Consensus 45 P~~~t~~~~~~~L~~~gi~~Iv~ 67 (189)
T 3rz2_A 45 PTNATLNKFIEELKKYGVTTIVR 67 (189)
T ss_dssp CCTTTHHHHHHHHHTTTEEEEEE
T ss_pred CCcccHHHHHHHHHHcCCcEEEE
Confidence 55457788999999999997654
No 72
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.23 E-value=41 Score=17.13 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=20.9
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+...++ ..+|+||.|-
T Consensus 27 ~sa~ei~~~l~~~~~~i--s~~TVYR~L~ 53 (131)
T 2o03_A 27 RSAQELHDELRRRGENI--GLTTVYRTLQ 53 (131)
T ss_dssp EEHHHHHHHHHHTTCCC--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCC--CHhhHHHHHH
Confidence 68999999998876653 4688998665
No 73
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=24.04 E-value=87 Score=17.89 Aligned_cols=25 Identities=8% Similarity=-0.054 Sum_probs=18.2
Q ss_pred eEeecCCCCCCChhHHHHHHhhhcc
Q psy10051 4 GRKFEGTPFHPGNDRYWSIVEKYKV 28 (63)
Q Consensus 4 ~vl~~g~p~~~d~~~~~~~i~~~~v 28 (63)
+|+|+++|.+.+++..-++++...+
T Consensus 46 fIf~~~SpR~V~~~~A~~i~~~~~~ 70 (228)
T 4aaj_A 46 VVVNSNSKRRIPLEKAREIIENSAI 70 (228)
T ss_dssp EECSSSSTTBCCHHHHHHHHHHCSS
T ss_pred EEecCCCCCCCCHHHHHHHHHhhCC
Confidence 5778888887788887777765443
No 74
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.31 E-value=43 Score=17.58 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=20.7
Q ss_pred CChhHHHHHHhhhcceEEeecHHHHHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~ 42 (63)
++++.+++.+.+...++ ..+|+||.|-
T Consensus 34 ~sa~ei~~~l~~~~~~i--s~aTVYR~L~ 60 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEI--GLATVYRVLN 60 (150)
T ss_dssp EEHHHHHHHHHHTTCCC--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCC--CHHHHHHHHH
Confidence 68999999998876653 4688998654
No 75
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.65 E-value=68 Score=14.62 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=23.2
Q ss_pred hHHHHHHhhhcceEEeecHHHHHHH-HhcC
Q psy10051 17 DRYWSIVEKYKVNQFYTAPTAIRTL-MKYG 45 (63)
Q Consensus 17 ~~~~~~i~~~~vT~~~~~Pt~~~~l-~~~~ 45 (63)
+.|.+++.+++|.-...--.+++.+ .+.|
T Consensus 7 ~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 7 KEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp HHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 5678999999999888778888888 6654
No 76
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=22.49 E-value=95 Score=16.24 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=20.5
Q ss_pred CChhHHHHHH-hhhcceEEeecHHHHH
Q psy10051 14 PGNDRYWSIV-EKYKVNQFYTAPTAIR 39 (63)
Q Consensus 14 ~d~~~~~~~i-~~~~vT~~~~~Pt~~~ 39 (63)
+|-...|+.+ ..+++....+.+.+.+
T Consensus 70 ~~l~~~~~~La~~~gv~l~vC~~~a~~ 96 (140)
T 2d1p_A 70 FDLVRAWQQLNAQHGVALNICVAAALR 96 (140)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEHHHHHH
T ss_pred CChHHHHHHHHHHcCCEEEEeHHHHHH
Confidence 4666678888 8999998888887654
No 77
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=22.22 E-value=73 Score=14.82 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=21.4
Q ss_pred CCceEeecCCCCCCCh------hHHHHHHhhhcceE
Q psy10051 1 MNPGRKFEGTPFHPGN------DRYWSIVEKYKVNQ 30 (63)
Q Consensus 1 ~~t~vl~~g~p~~~d~------~~~~~~i~~~~vT~ 30 (63)
|..+++|.. +.-+.. .+..++++++++..
T Consensus 1 M~~v~ly~~-~~C~~c~~~~~~~~ak~~L~~~~i~~ 35 (93)
T 1t1v_A 1 MSGLRVYST-SVTGSREIKSQQSEVTRILDGKRIQY 35 (93)
T ss_dssp CCCEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEEc-CCCCCchhhHHHHHHHHHHHHCCCce
Confidence 677888875 333566 78888999988874
No 78
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=21.29 E-value=1.2e+02 Score=16.98 Aligned_cols=41 Identities=12% Similarity=0.331 Sum_probs=25.8
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEE-eec-------HHHHHHHHhcCC
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQF-YTA-------PTAIRTLMKYGE 46 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~-~~~-------Pt~~~~l~~~~~ 46 (63)
+-+|..|. -....++++++++++... |.+ |..++.+.+.+.
T Consensus 37 LTFDDGp~-~~~~~il~iL~~~~v~ATfFv~g~~~~~~p~~~~~~~~~Gh 85 (230)
T 2y8u_A 37 LTFDDGPS-EYTPQLLDLLSRYSARATFFVLGDAAAQNPGLLQRMRDEGH 85 (230)
T ss_dssp EEEESCCC-TTHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTC
T ss_pred EEecCCch-hhHHHHHHHHHHcCCCEEEEEecHHHhHCHHHHHHHHHCCC
Confidence 34565454 246789999999999844 433 444556665543
No 79
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=20.43 E-value=1.1e+02 Score=17.43 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=27.3
Q ss_pred EeecCCCCCCChhHHHHHHhhhcceEEe-e--------cHH-HHHHHHhcCC
Q psy10051 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFY-T--------APT-AIRTLMKYGE 46 (63)
Q Consensus 5 vl~~g~p~~~d~~~~~~~i~~~~vT~~~-~--------~Pt-~~~~l~~~~~ 46 (63)
+-+|..|..-...+++++++++++...+ . -|. .++.+.+.+.
T Consensus 30 LTFDDG~~~~~t~~il~iL~~~~v~ATF~Fv~g~~~~~~p~~~~~~i~~~Gh 81 (254)
T 2vyo_A 30 INFVDGPVRGVTDRILNTLDELGVKATFSFTVNQKAVGNVGQLYRRAVEEGH 81 (254)
T ss_dssp EEEESCCCTTHHHHHHHHHHHHTCCCEEEECCSSCCCGGGTHHHHHHHHTTC
T ss_pred EEEeCCCCcccHHHHHHHHHHcCCCEEEEEccChHHhHCHHHHHHHHHhCCC
Confidence 3455544311136789999999988666 2 366 7888877654
No 80
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=20.35 E-value=88 Score=15.03 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=19.6
Q ss_pred CChhHHHHHHhhhcceEEeecHHHH
Q psy10051 14 PGNDRYWSIVEKYKVNQFYTAPTAI 38 (63)
Q Consensus 14 ~d~~~~~~~i~~~~vT~~~~~Pt~~ 38 (63)
++....|+.+.++++.++.+...+-
T Consensus 59 ~~~~~~l~~l~~~gv~v~~C~~~l~ 83 (117)
T 1jx7_A 59 YNIQQMLEILTAQNVPVKLCKTCTD 83 (117)
T ss_dssp CCHHHHHHHHHHTTCCEEEEHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEeHHHHH
Confidence 3566789989999999888887653
No 81
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=20.33 E-value=74 Score=15.30 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=10.9
Q ss_pred CChhHHHHHHhhhc
Q psy10051 14 PGNDRYWSIVEKYK 27 (63)
Q Consensus 14 ~d~~~~~~~i~~~~ 27 (63)
.+++.+.+.|++|+
T Consensus 92 ~~~~~l~~~i~k~K 105 (105)
T 3zzx_A 92 ANYDKLLELVEKNK 105 (105)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHhcC
Confidence 47888888888775
No 82
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=20.27 E-value=1.3e+02 Score=16.90 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=20.4
Q ss_pred hhHHHHHHhhhcceEEee-c-------HHHHHHHHhcCC
Q psy10051 16 NDRYWSIVEKYKVNQFYT-A-------PTAIRTLMKYGE 46 (63)
Q Consensus 16 ~~~~~~~i~~~~vT~~~~-~-------Pt~~~~l~~~~~ 46 (63)
..+++++++++++...|. + |..++.+.+.+.
T Consensus 58 t~~il~iL~~~~v~ATfFv~g~~~~~~p~~~~~~~~~Gh 96 (240)
T 1ny1_A 58 TPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGH 96 (240)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEEeChhhhhCHHHHHHHHHCcC
Confidence 357899999999884443 3 344556666553
No 83
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=20.22 E-value=97 Score=15.49 Aligned_cols=7 Identities=14% Similarity=0.021 Sum_probs=3.5
Q ss_pred ceEeecC
Q psy10051 3 PGRKFEG 9 (63)
Q Consensus 3 t~vl~~g 9 (63)
|+|+|++
T Consensus 45 TlVfyes 51 (115)
T 3ffy_A 45 TMVFYES 51 (115)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 4455554
Done!