RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10051
(63 letters)
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 95.7 bits (239), Expect = 3e-25
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
+EG P +P R+W IVEKYKV FYTAPTAIR LM++G+ +KH
Sbjct: 299 YEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKH 344
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 89.8 bits (224), Expect = 3e-23
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
FEG P +P R+W +++K+KV FYTAPTAIR LMK G+ +K+
Sbjct: 319 FEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKY 364
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 89.2 bits (222), Expect = 6e-23
Identities = 28/46 (60%), Positives = 35/46 (76%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
FEGTP +P R+W I+EK+KV FYTAPTAIR LM+ G+ V+KH
Sbjct: 310 FEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKH 355
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 64.1 bits (156), Expect = 4e-14
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
FEG P +P + R W IV+KYKV FYTAPT +R+LM+ G+ V +H
Sbjct: 349 FEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRH 394
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 61.5 bits (150), Expect = 3e-13
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
+EG P P +W IVEKYKVN+ ++APTAIR L K ++KH++
Sbjct: 307 YEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDL 354
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 60.7 bits (148), Expect = 6e-13
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
+EG P +P DR W IVE++KV +PT IR L +G+ PV+ H
Sbjct: 173 YEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGH 218
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 60.4 bits (147), Expect = 7e-13
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46
++G PF+ +R W +EKYKV F T+PT +R LMK G
Sbjct: 245 YDGRPFYSP-ERLWEALEKYKVTIFGTSPTFLRRLMKLGL 283
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 55.7 bits (134), Expect = 4e-11
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
+EG P +P +WSIVE+Y V ++APTAIR L K ++KH++
Sbjct: 306 YEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDL 353
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 53.7 bits (130), Expect = 1e-10
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 17 DRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
+R++ I+E YKV +YTAPTAIR LM G+ V+K+
Sbjct: 285 ERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKY 320
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 47.7 bits (114), Expect = 2e-08
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 7 FEGTP-FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
+EG P P YW ++E+Y VN +TAPTAIR + K
Sbjct: 294 YEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRK 331
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 44.7 bits (106), Expect = 3e-07
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 18 RYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVE 55
R++ I+E+ KV +YTAPTA+R LM+ G ++++
Sbjct: 170 RWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLS 207
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 41.3 bits (98), Expect = 4e-06
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
++G+PF+P + W + + V F T+ + K G P + H
Sbjct: 335 YDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETH 380
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 40.3 bits (95), Expect = 9e-06
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
++G+P +P D W + K + F T+ + L K G P + H
Sbjct: 308 YDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTH 353
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 39.2 bits (92), Expect = 2e-05
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 17 DRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
+W IVE+Y++N PT L++ PV H++
Sbjct: 298 ANFWKIVERYRINFLSGVPTVYAALLQV---PVDGHDI 332
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 35.8 bits (83), Expect = 4e-04
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 17 DRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46
R ++EKYKV Y PT +R L+K E
Sbjct: 211 ARLLDLIEKYKVTVLYGVPTLLRLLLKAPE 240
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 35.5 bits (82), Expect = 5e-04
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 7 FEGTPFHPGN--DRYWSIVEKYKVNQFYTAPTAIRTLMKY 44
FEG + D W+ +EK+KV T P IR L+K
Sbjct: 327 FEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKT 366
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 34.2 bits (79), Expect = 0.001
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
+ G F R ++E+Y V F PTA R L++
Sbjct: 154 YHGRRFDAE--RTLELLERYGVTTFCAPPTAYRMLLQ 188
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 33.2 bits (76), Expect = 0.004
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 11 PFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45
F N + ++E+ V F +PTA R LM G
Sbjct: 164 GFTAENT--YDVLERLGVTNFAGSPTAYRMLMAAG 196
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 32.6 bits (75), Expect = 0.005
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 17 DRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46
+ ++E+Y+V + PT L K E
Sbjct: 80 LSFLELIEQYRVTVLFGVPTLYDALAKAAE 109
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 31.6 bits (72), Expect = 0.012
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTL 41
P +F+ W++VE+++V +T PT ++ L
Sbjct: 237 PSERFDP-------AEVWALVERHRVTNLFTVPTILKML 268
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 29.8 bits (68), Expect = 0.049
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 12 FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
F R+W V K+ F LMK
Sbjct: 157 FSA--SRFWDQVRKHGATVFNLLGAMAAILMK 186
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 28.3 bits (63), Expect = 0.18
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
++G+P P + W I E+ F T+ + K G P + H++
Sbjct: 336 YDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDL 383
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 28.0 bits (63), Expect = 0.20
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 18 RYWSIVEKYKVNQFYTAPTA 37
+W IVE+Y+V PT
Sbjct: 88 NFWKIVERYRVTLLSAVPTV 107
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 27.9 bits (63), Expect = 0.25
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 11 PFHPGN---DRYWSIVEKYKVNQFYTAPTAIRTLMKYGEG 47
P P + ++ +E+Y V + +P + L +YGE
Sbjct: 243 PTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEA 282
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 27.2 bits (61), Expect = 0.38
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 18 RYWSIVEKYKVNQFYTAPTAIRTLMKYGEGP 48
++W + KY+V + PT + L+K +
Sbjct: 82 KFWDDIAKYRVTWYSAVPTIHQILLKTAKPN 112
>gnl|CDD|221940 pfam13151, DUF3990, Protein of unknown function (DUF3990). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 151
Score = 26.8 bits (60), Expect = 0.50
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 16 NDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46
+DR +S V + +N + A+ +K G+
Sbjct: 104 DDRVFSTVNLF-INGNISLEQALE-RLKLGK 132
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 26.7 bits (59), Expect = 0.64
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 9 GTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44
PF P + ++EKYKV PT +R L+
Sbjct: 248 PEPFDP--EEVLWLIEKYKVTVLSGVPTFLRELLDN 281
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 26.7 bits (60), Expect = 0.69
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 12 FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
F P + ++E+++V + PT + L++
Sbjct: 76 FDP--EAVLDLIERHRVTHTFLVPTMFQRLLR 105
>gnl|CDD|185689 cd02180, GH16_fungal_KRE6_glucanase, Saccharomyces cerevisiae
KRE6 and related glucanses, member of glycosyl
hydrolase family 16. KRE6 is a Saccharomyces
cerevisiae glucanase that participates in the synthesis
of beta-1,6-glucan, a major structural component of the
cell wall. It is a golgi membrane protein required for
normal beta-1,6-glucan levels in the cell wall. KRE6
is closely realted to laminarinase, a glycosyl
hydrolase family 16 member that hydrolyzes
1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans
such as laminarins, curdlans, paramylons, and
pachymans, with very limited action on mixed-link
(1,3-1,4-)-beta-D-glucans.
Length = 295
Score = 26.5 bits (59), Expect = 0.75
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 8 EGTPFHPGNDRYWSIVEKY 26
+G F+PG+D +W V+ +
Sbjct: 10 DGRTFYPGDDPFWEAVDLH 28
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes
such as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 26.2 bits (58), Expect = 1.1
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 11 PFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGP 48
F P N+R + ++Y N + LM GEGP
Sbjct: 5 HFDPSNNRTFQ--QRYFYNDQHYRNGGPIFLMIGGEGP 40
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 26.1 bits (58), Expect = 1.2
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 16/56 (28%)
Query: 2 NPGRKFE-GTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVEL 56
+FE GTP N + A+ L++ G ++ HE EL
Sbjct: 268 ELPLRFEAGTP----N-----------IAGAIGLAAALDYLLEIGMEAIEAHEREL 308
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 25.8 bits (57), Expect = 1.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 18 RYWSIVEKYKVNQFYTAPTAIRTLM 42
+W V KY+ P IRTLM
Sbjct: 253 AFWGQVCKYRATITECIPMMIRTLM 277
>gnl|CDD|239158 cd02757, MopB_Arsenate-R, This CD includes the respiratory
arsenate reductase, As(V), catalytic subunit (ArrA) and
other related proteins. These members belong to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 523
Score = 25.5 bits (56), Expect = 1.7
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 5 RKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
K EG P HPG+ + Q Y P I MK
Sbjct: 25 TKVEGNPLHPGSRGRLCAKGHLGLQQVYD-PDRILYPMK 62
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 25.5 bits (56), Expect = 1.7
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
+++++ +TAPTA R ++
Sbjct: 224 ATPPLLLKAIQEHRATILFTAPTAYRAMLI 253
>gnl|CDD|221842 pfam12902, Ferritin-like, Ferritin-like. This is a family of
bacterial ferritin-like substances that also includes a
C-terminal domain of VioB, polyketide synthase enzymes,
that make up one of the key components of the violacein
biosynthesis pathway. Violacein is a purple-coloured,
broad-spectrum antibacterial pigment.
Length = 217
Score = 25.4 bits (56), Expect = 1.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 4 GRKFEGTPFH-PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEG 47
FEG P GN+ Y+ E + V +A AI + + GEG
Sbjct: 150 FGGFEGDPLRQIGNEHYYPPDELFPVTDLASALRAIDEITEQGEG 194
>gnl|CDD|179667 PRK03892, PRK03892, ribonuclease P protein component 3;
Provisional.
Length = 216
Score = 24.8 bits (54), Expect = 2.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 18 RYWSIVEKYKVNQFYTA 34
+ W +V KYKV +F T+
Sbjct: 157 KAWQLVNKYKVPRFITS 173
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 25.0 bits (55), Expect = 2.8
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 17 DRYWSIVEKYKVNQFYTAPTAIRTLM 42
RY +EK+ V F PT R +
Sbjct: 165 RRYLGALEKFGVTTFCAPPTVWRMFI 190
>gnl|CDD|114667 pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methyltransferase.
This family consists of (Uracil-5-)-methyltransferases
EC:2.1.1.35 from bacteria, archaea and eukaryotes. A
5-methyluridine (m(5)U) residue at position 54 is a
conserved feature of bacterial and eukaryotic tRNAs.
The methylation of U54 is catalyzed by the
tRNA(m5U54)methyltransferase, which in Saccharomyces
cerevisiae is encoded by the nonessential TRM2 gene. It
is thought that tRNA modification enzymes might have a
role in tRNA maturation not necessarily linked to their
known catalytic activity.
Length = 353
Score = 24.7 bits (54), Expect = 3.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 12 FHPGNDRYWSIVE-----KYKVNQFYTAPTAIRTLMK 43
+H G+D Y+++ + K +V+QF A I LM
Sbjct: 44 WHEGDDLYYAMFDQQTKSKIRVDQFPAASELINRLMP 80
>gnl|CDD|131198 TIGR02143, trmA_only, tRNA (uracil-5-)-methyltransferase. This
family consists exclusively of proteins believed to act
as tRNA (uracil-5-)-methyltransferase. All members of
far are proteobacterial. The seed alignment was taken
directly from pfam05958 in Pfam 12.0, but higher
cutoffs are used to select only functionally equivalent
proteins. Homologous proteins excluded by the higher
cutoff scores of this model include other uracil
methyltransferases, such as RumA, active on rRNA
[Protein synthesis, tRNA and rRNA base modification].
Length = 353
Score = 24.7 bits (54), Expect = 3.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 12 FHPGNDRYWSIVE-----KYKVNQFYTAPTAIRTLMK 43
+H G+D Y+++ + K +V+QF A I LM
Sbjct: 44 WHEGDDLYYAMFDQQTKSKIRVDQFPAASELINRLMP 80
>gnl|CDD|221067 pfam11301, DUF3103, Protein of unknown function (DUF3103). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 344
Score = 23.8 bits (52), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 12 FHP-GNDRYWSIVEKYKVN 29
F P G+D+ W +E Y V+
Sbjct: 92 FEPSGDDKNWQYIEAYDVD 110
>gnl|CDD|226401 COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism].
Length = 250
Score = 23.6 bits (51), Expect = 8.7
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 3 PGRKFEGTPF-HPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY 44
P R + F H N +YWS +E+ ++F +R ++Y
Sbjct: 158 PVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGPLRLTLEY 200
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.410
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,124,426
Number of extensions: 205997
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 41
Length of query: 63
Length of database: 10,937,602
Length adjustment: 34
Effective length of query: 29
Effective length of database: 9,429,566
Effective search space: 273457414
Effective search space used: 273457414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)