RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10051
(63 letters)
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 97.3 bits (243), Expect = 5e-26
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
FEGTP +P RYW I++++KV QFY APTA+R L + G+ ++ H
Sbjct: 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 381
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 96.9 bits (242), Expect = 8e-26
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
FEG P P R +V+K++VN YTAPTAIR LM G+ ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGT 375
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 58.0 bits (141), Expect = 3e-12
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
++ F KY V F PT R L+K
Sbjct: 298 YDYDRFEA--KNMLEKASKYGVTTFCAPPTIYRFLIK 332
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 51.1 bits (123), Expect = 8e-10
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45
F P + Y + AP R L++
Sbjct: 279 HLLPKFDP--LVILKTLSSYPIKSMMGAPIVYRMLLQQD 315
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 34.1 bits (79), Expect = 0.001
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 11 PFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGP 48
D ++ + +++ FY PT ++ P
Sbjct: 260 RPTA--DAIFARLVEHRPTVFYGVPTLYANMLVSPNLP 295
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Length = 330
Score = 27.1 bits (59), Expect = 0.31
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 6 KFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTA 37
PG W + +V F T T
Sbjct: 141 AGSHLVCMPGTHSKWVRLADDRVEGFSTFMTG 172
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 26.4 bits (59), Expect = 0.50
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 12 FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42
F + WS++ + +V P + +
Sbjct: 245 FDA--TKVWSLIVEERVCIGGAVPAILNFMR 273
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 26.1 bits (58), Expect = 0.73
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 21 SIVEKYKVNQFYTAPTAIRTLMKY 44
++++ KV P + + K
Sbjct: 312 ELIQRCKVTVAPMVPPIVLAIAKS 335
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 26.0 bits (58), Expect = 0.78
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 23 VEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
+EKYK + P A+ L+ E + +
Sbjct: 264 IEKYKGTFSWAVPPALNVLVNTLESSNKTY 293
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 26.0 bits (58), Expect = 0.81
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 21 SIVEKYKVNQFYTAPTAIRTLMKY 44
++EKYKV+ P + ++ K
Sbjct: 265 GLIEKYKVSIAPVVPPVMMSIAKS 288
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 26.0 bits (58), Expect = 0.83
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 21 SIVEKYKVNQFYTAPTAIRTLMKY 44
++ YK PT L K
Sbjct: 277 KTLQDYKCTSVILVPTLFAILNKS 300
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae}
PDB: 3r1x_A*
Length = 295
Score = 25.8 bits (56), Expect = 0.84
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 13 HPGNDRYWSIVEKYKVNQFYTAPTA 37
PG W + ++ +++ F T T
Sbjct: 140 MPGTHCKWVLADRRQIHDFRTVLTG 164
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 25.6 bits (57), Expect = 0.93
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 12 FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42
F P + +E +KV + ++
Sbjct: 235 FDP--AQAARDIEAHKVTVMAEFAPMLGNIL 263
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 25.7 bits (57), Expect = 0.97
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 21 SIVEKYKVNQFYTAPTAIRTLMKY 44
++ YK+ PT K
Sbjct: 275 RSLQDYKIQSALLVPTLFSFFAKS 298
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 25.2 bits (56), Expect = 1.4
Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 12 FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46
F+ ++ ++++ ++ P + LM+ G
Sbjct: 238 FNA--EQILTMIKNERITHISLVPQTLNWLMQQGL 270
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 23.7 bits (52), Expect = 4.3
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 12 FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLM 42
F P +V++ +V + PT + L
Sbjct: 231 FRP--VDALQLVQQEQVTSLFATPTHLDALA 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.410
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 935,548
Number of extensions: 38211
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 16
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)