RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10051
         (63 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 45.0 bits (106), Expect = 4e-08
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHE 53
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++  +
Sbjct: 326 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD 372


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 43.7 bits (102), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 33/46 (71%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           FEGTP +P   RYW I++++KV QFY APTA+R L + G+  ++ H
Sbjct: 313 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 358


>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
          [TaxId: 274]}
          Length = 224

 Score = 22.3 bits (47), Expect = 5.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 18 RYWSIVEKYKVNQFYTAPTAIRTLMKY 44
          RY +++EK   N+ YT   A   + + 
Sbjct: 2  RYRALLEKVDPNKIYTIDEAAHLVKEL 28


>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
           562]}
          Length = 343

 Score = 22.2 bits (46), Expect = 6.5
 Identities = 5/13 (38%), Positives = 6/13 (46%)

Query: 10  TPFHPGNDRYWSI 22
            PF  G    WS+
Sbjct: 330 VPFLAGETVRWSV 342


>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus
           thermophilus [TaxId: 274]}
          Length = 298

 Score = 21.8 bits (45), Expect = 8.2
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 9   GTPFHPGNDRYW 20
             P HPG +R++
Sbjct: 280 PIPLHPGAERFY 291


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,167
Number of extensions: 8129
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 5
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.6 bits)