BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10052
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 200 LSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDV 259
L S R A+ LG++ + ++ L AL+D+ + VR A+ALG I +
Sbjct: 23 LQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DAWVRRAAADALGQIGDERAVEP 80
Query: 260 LRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSK 319
L K L DE VRQS +AL E +VE L K LKD
Sbjct: 81 LIKALKDEDGWVRQSAAVALGQIGDERAVE-----PLIK--------------ALKDEDW 121
Query: 320 PLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQM 365
+ R A F L IG + A++ + +A D+ ++ A LG++
Sbjct: 122 FV--RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 49 DESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILE 108
D+S ++ AY LG++ D A + L + L+D ++ VR AA+ALG IGD+ ++ L
Sbjct: 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLI 82
Query: 109 KYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILL 168
K +D V ++ +AL +I G PL I LK
Sbjct: 83 KALKDEDGWVRQSAAVALGQI----------------GDERAVEPL-----IKALK---- 117
Query: 169 NENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALT 228
+ED F+R A F L +I + L + L R A LG++ A+
Sbjct: 118 --DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAME 175
Query: 229 SALEDQT 235
E T
Sbjct: 176 KLAETGT 182
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 24 RFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQ 83
R A + L IG + A++ + +A DE A ++ A LGQ+ D A + L + L+D +
Sbjct: 31 RRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKD--E 88
Query: 84 EPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 129
+ VR AA ALG IGD+ ++ L K +D V AL I
Sbjct: 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI 134
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 254 PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQV 313
PE ++ K L D+ VR++ AL E +VE L K
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE-----PLIK--------------A 53
Query: 314 LKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDI 373
LKD + R A L IG + A++ + +A D+ ++ A LGQ+ D A +
Sbjct: 54 LKDEDAWV--RRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEP 111
Query: 374 LRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 429
L + L+D ++ VR AA ALG IGD+ ++ L K +D V ++ AL I
Sbjct: 112 LIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 170 ENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTS 229
+++ ++R A + L I + L + L + R A LGQ+ + ++ L
Sbjct: 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIK 83
Query: 230 ALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVE 289
AL+D ++ VR A ALG I + L K L DE VR + AL E +VE
Sbjct: 84 ALKD--EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVE 141
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 170 ENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTS 229
++ED ++R A L I + L + L R A LGQ+ + ++ L
Sbjct: 55 KDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIK 114
Query: 230 ALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIAL 279
AL+D ++ VR A ALG I + L K L DE VRQS AL
Sbjct: 115 ALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 162
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 24 RFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQ 83
R A L IG + A++ + +A DE ++ A LGQ+ D A + L + L+D +
Sbjct: 62 RRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKD--E 119
Query: 84 EPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 129
+ VR AA ALG IGD+ ++ L K +D V ++ AL I
Sbjct: 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 200 LSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDV 259
L S R A+ LG++ + ++ L AL+D+ + VR A+ALG I +
Sbjct: 28 LQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DAWVRRAAADALGQIGDERAVEP 85
Query: 260 LRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSK 319
L K L DE VRQS +AL E +VE L K LKD
Sbjct: 86 LIKALKDEDGWVRQSAAVALGQIGDERAVE-----PLIK--------------ALKDEDW 126
Query: 320 PLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQM 365
+ R A F L IG + A++ + +A D+ ++ A LG++
Sbjct: 127 FV--RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 49 DESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILE 108
D+S ++ AY LG++ D A + L + L+D ++ VR AA+ALG IGD+ ++ L
Sbjct: 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLI 87
Query: 109 KYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILL 168
K +D V ++ +AL +I G PL I LK
Sbjct: 88 KALKDEDGWVRQSAAVALGQI----------------GDERAVEPL-----IKALK---- 122
Query: 169 NENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQM 218
+ED F+R A F L +I + L + L R A LG++
Sbjct: 123 --DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQ 64
EK+ + + L+D S + R A + L IG + A++ + +A DE A ++ A LGQ
Sbjct: 19 EKVEMYIKNLQDDSYYV--RRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQ 76
Query: 65 MKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQD 113
+ D A + L + L+D ++ VR AA ALG IGD+ ++ L K +D
Sbjct: 77 IGDERAVEPLIKALKD--EDGWVRQSAAVALGQIGDERAVEPLIKALKD 123
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 23/178 (12%)
Query: 252 ATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIG 311
A PE ++ K L D+ VR++ AL E +VE L K
Sbjct: 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE-----PLIK------------- 57
Query: 312 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDAN 371
LKD + R A L IG + A++ + +A D+ ++ A LGQ+ D A
Sbjct: 58 -ALKDEDAWV--RRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 114
Query: 372 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 429
+ L + L+D ++ VR AA ALG IGD+ ++ L K +D V ++ AL I
Sbjct: 115 EPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 158 SDINKLKEILLN-ENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLG 216
+D K++ + N +++ ++R A + L I + L + L + R A LG
Sbjct: 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALG 75
Query: 217 QMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCE 276
Q+ + ++ L AL+D ++ VR A ALG I + L K L DE VR +
Sbjct: 76 QIGDERAVEPLIKALKD--EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAA 133
Query: 277 IALDMCDYENSVE 289
AL E +VE
Sbjct: 134 FALGEIGDERAVE 146
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 170 ENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTS 229
++ED ++R A L I + L + L R A LGQ+ + ++ L
Sbjct: 60 KDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIK 119
Query: 230 ALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIAL 279
AL+D ++ VR A ALG I + L K L DE VRQS AL
Sbjct: 120 ALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 24 RFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQ 83
R A L IG + A++ + +A DE ++ A LGQ+ D A + L + L+D +
Sbjct: 67 RRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKD--E 124
Query: 84 EPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 129
+ VR AA ALG IGD+ ++ L K +D V ++ AL I
Sbjct: 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
>pdb|3N6L|A Chain A, The Crystal Strucutre Of Rna-Dependent Rna Polymerase Of
Ev71 Virus
pdb|3N6M|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Gtp
pdb|3N6N|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Br-Utp
Length = 462
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 184 LRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVR 241
LR+I E ++L EG++H +YR++ VLG M PS TS N ++R
Sbjct: 253 LREIGYSEGAISLIEGINHTHHVYRNKTYCVLGGM--PSGCSG-TSIFNSMINNIIIR 307
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 303 PEEKILLIGQVLKD---SSKPLKERFRALFTLKNIG------GKTAIQ-CISEAFADKSA 352
P+E ++GQ ++D S R AL +L +G G+ ++ I EAF+ S
Sbjct: 834 PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSE 893
Query: 353 LLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ 412
+K +Y LG + + + L VL++ + +P ++ +L I +S+ L+ Y +
Sbjct: 894 EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVE 953
Query: 413 D 413
+
Sbjct: 954 N 954
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 3 PEEKILLIGQVLKD---SSKPLKERFRALFTLKNIG------GKTAIQ-CISEAFADESA 52
P+E ++GQ ++D S R AL +L +G G+ ++ I EAF+ S
Sbjct: 834 PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSE 893
Query: 53 LLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ 112
+K +Y LG + + + L VL++ + +P ++ +L I +S+ L+ Y +
Sbjct: 894 EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVE 953
Query: 113 D 113
+
Sbjct: 954 N 954
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 303 PEEKILLIGQVLKD---SSKPLKERFRALFTLKNIG------GKTAIQ-CISEAFADKSA 352
P+E ++GQ ++D S R AL +L +G G+ ++ I EAF+ S
Sbjct: 811 PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSE 870
Query: 353 LLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ 412
+K +Y LG + + + L VL++ + +P ++ +L I +S+ L+ Y +
Sbjct: 871 EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVE 930
Query: 413 D 413
+
Sbjct: 931 N 931
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 3 PEEKILLIGQVLKD---SSKPLKERFRALFTLKNIG------GKTAIQ-CISEAFADESA 52
P+E ++GQ ++D S R AL +L +G G+ ++ I EAF+ S
Sbjct: 811 PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSE 870
Query: 53 LLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ 112
+K +Y LG + + + L VL++ + +P ++ +L I +S+ L+ Y +
Sbjct: 871 EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVE 930
Query: 113 D 113
+
Sbjct: 931 N 931
>pdb|4IXN|A Chain A, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
pdb|4IXN|B Chain B, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
Length = 318
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 128 RIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKL 184
R F+ DKQ D +I +D P+D +S+++++ E LL E+ D +RYK M +
Sbjct: 213 RFHFIA--DKQNDISSIVVELDY--PVD-ISEVSRVMENLLLESADKLLRYKGMLWI 264
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 428 RIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKL 484
R F+ DKQ D +I +D P+D +S+++++ E LL E+ D +RYK M +
Sbjct: 213 RFHFIA--DKQNDISSIVVELDY--PVD-ISEVSRVMENLLLESADKLLRYKGMLWI 264
>pdb|1NIJ|A Chain A, Yjia Protein
pdb|4IXM|A Chain A, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
pdb|4IXM|B Chain B, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
Length = 318
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 128 RIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKL 184
R F+ DKQ D +I +D P+D +S+++++ E LL E+ D +RYK M +
Sbjct: 213 RFHFIA--DKQNDISSIVVELDY--PVD-ISEVSRVMENLLLESADKLLRYKGMLWI 264
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 428 RIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKL 484
R F+ DKQ D +I +D P+D +S+++++ E LL E+ D +RYK M +
Sbjct: 213 RFHFIA--DKQNDISSIVVELDY--PVD-ISEVSRVMENLLLESADKLLRYKGMLWI 264
>pdb|3RJ1|B Chain B, Architecture Of The Mediator Head Module
pdb|3RJ1|I Chain I, Architecture Of The Mediator Head Module
pdb|3RJ1|P Chain P, Architecture Of The Mediator Head Module
Length = 583
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 160 INKLKEILLNENEDLFMRYK-------AMFKLRDINSVESTLALTEGLSHGSSLYRHE-- 210
NKL IL NE+ D + + +FK+RD S + LA+ G S Y+H+
Sbjct: 198 FNKLSSILQNEH-DYWNKIXQSISNKDVIFKIRDRTSGQKLLAIKYGYEDSGSTYKHDRG 256
Query: 211 IAFVLGQM--QNPSSIPALTSAL 231
IA + + QN IP +S
Sbjct: 257 IANIRNNIESQNLDLIPHSSSVF 279
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 42/115 (36%)
Query: 334 IGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAE 393
I G + C A K K L +M +A D+L + D EP+++ +A
Sbjct: 353 INGDKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDVLVTDMTDPDWEPVMKRASAI 412
Query: 394 ALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSV 448
G +I+ + P LK Q VT + DTG IY +
Sbjct: 413 VTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQEVTVSCAEGDTGFIYAGL 467
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 42/115 (36%)
Query: 34 IGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAE 93
I G + C A + K L +M +A D+L + D EP+++ +A
Sbjct: 353 INGDKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDVLVTDMTDPDWEPVMKRASAI 412
Query: 94 ALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSV 148
G +I+ + P LK Q VT + DTG IY +
Sbjct: 413 VTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQEVTVSCAEGDTGFIYAGL 467
>pdb|4GWP|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 687
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 160 INKLKEILLNENEDLFMRY-------KAMFKLRDINSVESTLALTEGLSHGSSLYRHE-- 210
NKL IL NE+ D + + +FK+RD S + LA+ G S Y+H+
Sbjct: 295 FNKLSSILQNEH-DYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGYEDSGSTYKHDRG 353
Query: 211 IAFVLGQM--QNPSSIPALTSALE 232
IA + + QN IP +S +
Sbjct: 354 IANIRNNIESQNLDLIPHSSSVFK 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,476,535
Number of Sequences: 62578
Number of extensions: 534925
Number of successful extensions: 1621
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1552
Number of HSP's gapped (non-prelim): 39
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)