Query psy10052
Match_columns 500
No_of_seqs 269 out of 2240
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 16:41:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0567|consensus 100.0 2.5E-30 5.5E-35 222.6 23.6 283 6-290 4-286 (289)
2 PRK09687 putative lyase; Provi 100.0 1.2E-28 2.6E-33 227.7 25.9 243 3-280 21-278 (280)
3 PRK09687 putative lyase; Provi 100.0 6.1E-27 1.3E-31 216.3 27.7 206 36-266 21-234 (280)
4 PRK13800 putative oxidoreducta 100.0 1.3E-25 2.7E-30 241.4 33.6 285 52-428 608-896 (897)
5 PRK13800 putative oxidoreducta 99.9 1.9E-25 4.1E-30 240.0 33.0 282 23-397 610-896 (897)
6 KOG0567|consensus 99.9 7.3E-26 1.6E-30 195.2 22.7 274 160-433 5-282 (289)
7 PLN03200 cellulose synthase-in 99.9 1E-19 2.2E-24 200.3 41.7 453 4-487 143-721 (2102)
8 PLN03200 cellulose synthase-in 99.9 1.9E-19 4.2E-24 198.1 38.7 443 4-494 98-688 (2102)
9 TIGR02270 conserved hypothetic 99.8 7.2E-19 1.6E-23 169.8 26.7 243 3-283 52-295 (410)
10 TIGR02270 conserved hypothetic 99.8 1.2E-18 2.5E-23 168.4 27.7 252 59-400 45-296 (410)
11 COG1413 FOG: HEAT repeat [Ener 99.8 2.1E-18 4.6E-23 166.9 28.8 287 38-428 43-332 (335)
12 COG1413 FOG: HEAT repeat [Ener 99.8 8.8E-18 1.9E-22 162.6 30.0 267 68-435 42-308 (335)
13 KOG0166|consensus 99.8 3.6E-17 7.7E-22 157.7 23.4 249 222-498 109-405 (514)
14 KOG2171|consensus 99.7 1.8E-14 4E-19 148.4 34.6 443 4-497 3-560 (1075)
15 COG5064 SRP1 Karyopherin (impo 99.7 4.9E-16 1.1E-20 139.0 18.3 252 220-498 112-412 (526)
16 KOG0166|consensus 99.7 7.3E-15 1.6E-19 141.9 27.5 314 40-434 68-439 (514)
17 PF01602 Adaptin_N: Adaptin N 99.6 4.9E-13 1.1E-17 138.1 29.3 385 6-431 80-524 (526)
18 COG5064 SRP1 Karyopherin (impo 99.6 2.9E-13 6.4E-18 121.4 23.4 304 103-435 72-447 (526)
19 PF01602 Adaptin_N: Adaptin N 99.6 1.8E-12 3.9E-17 133.9 30.5 419 8-486 45-521 (526)
20 PTZ00429 beta-adaptin; Provisi 99.6 5.9E-11 1.3E-15 123.1 37.2 384 6-431 106-546 (746)
21 PTZ00429 beta-adaptin; Provisi 99.5 2.7E-10 5.9E-15 118.2 39.9 431 4-482 31-539 (746)
22 KOG2062|consensus 99.5 1.6E-10 3.6E-15 113.8 30.6 300 175-493 356-702 (929)
23 KOG4224|consensus 99.5 1.4E-11 3E-16 111.8 20.2 227 191-431 208-493 (550)
24 KOG2023|consensus 99.4 2.4E-10 5.1E-15 111.5 26.8 444 5-487 128-730 (885)
25 KOG4224|consensus 99.4 4.1E-11 8.9E-16 108.8 19.8 303 3-367 83-446 (550)
26 KOG2023|consensus 99.4 3.9E-11 8.5E-16 116.8 20.9 402 4-432 9-506 (885)
27 KOG2171|consensus 99.4 1.3E-09 2.7E-14 113.4 31.5 371 39-487 5-459 (1075)
28 PF13646 HEAT_2: HEAT repeats; 99.3 2.5E-11 5.3E-16 92.6 8.5 86 40-127 1-88 (88)
29 PF13646 HEAT_2: HEAT repeats; 99.2 5.2E-11 1.1E-15 90.8 6.8 87 7-96 1-88 (88)
30 KOG1062|consensus 99.0 2.6E-07 5.6E-12 92.8 26.8 380 8-426 110-576 (866)
31 KOG1241|consensus 99.0 3.6E-07 7.9E-12 91.2 26.5 420 14-487 10-528 (859)
32 KOG1241|consensus 99.0 4.6E-07 1E-11 90.5 27.1 332 8-366 38-476 (859)
33 KOG1060|consensus 99.0 2.2E-07 4.8E-12 92.9 24.5 119 308-429 395-531 (968)
34 COG5240 SEC21 Vesicle coat com 99.0 2.9E-07 6.4E-12 88.9 23.5 407 40-498 67-564 (898)
35 KOG0211|consensus 98.9 6.3E-07 1.4E-11 92.7 25.6 414 21-488 173-663 (759)
36 KOG2062|consensus 98.9 2.6E-07 5.6E-12 91.8 21.6 305 13-332 349-692 (929)
37 KOG1060|consensus 98.9 7.5E-06 1.6E-10 82.3 29.8 430 6-486 36-530 (968)
38 PF10508 Proteasom_PSMB: Prote 98.9 5.8E-06 1.3E-10 84.0 30.2 151 5-174 77-259 (503)
39 PF10508 Proteasom_PSMB: Prote 98.9 8E-06 1.7E-10 83.0 30.7 226 43-287 43-322 (503)
40 COG5116 RPN2 26S proteasome re 98.8 3.8E-07 8.2E-12 88.1 18.2 299 176-492 352-698 (926)
41 KOG1062|consensus 98.8 5.8E-06 1.2E-10 83.4 26.2 375 75-498 113-558 (866)
42 KOG2259|consensus 98.8 1.1E-06 2.5E-11 86.3 20.3 226 196-431 203-475 (823)
43 KOG1242|consensus 98.8 1.3E-05 2.7E-10 79.2 27.5 386 48-487 27-481 (569)
44 KOG1242|consensus 98.7 2.6E-06 5.7E-11 83.8 21.6 384 6-424 97-557 (569)
45 KOG1824|consensus 98.6 6.5E-05 1.4E-09 77.2 29.1 436 9-488 9-637 (1233)
46 KOG0211|consensus 98.6 1.9E-05 4E-10 82.0 25.4 222 193-431 400-664 (759)
47 KOG1059|consensus 98.6 3.1E-05 6.7E-10 77.3 25.5 196 8-224 147-369 (877)
48 KOG1824|consensus 98.6 0.0002 4.4E-09 73.8 30.4 197 222-431 817-1036(1233)
49 KOG2259|consensus 98.6 6.8E-07 1.5E-11 87.8 11.9 254 105-400 201-511 (823)
50 KOG0213|consensus 98.5 0.00049 1.1E-08 69.3 31.3 390 14-430 519-988 (1172)
51 PF05804 KAP: Kinesin-associat 98.5 0.00029 6.4E-09 73.1 30.8 126 41-188 253-398 (708)
52 KOG1061|consensus 98.5 2.4E-05 5.3E-10 79.0 21.7 384 7-430 88-527 (734)
53 KOG1078|consensus 98.5 0.00042 9.1E-09 70.2 29.7 223 39-284 65-311 (865)
54 KOG0213|consensus 98.5 0.00065 1.4E-08 68.4 29.6 433 14-500 450-969 (1172)
55 KOG1058|consensus 98.4 0.0001 2.2E-09 74.1 23.3 87 192-279 244-341 (948)
56 COG5240 SEC21 Vesicle coat com 98.4 0.00056 1.2E-08 66.9 27.5 401 10-431 70-555 (898)
57 smart00638 LPD_N Lipoprotein N 98.3 0.00013 2.9E-09 76.1 23.6 232 190-426 325-573 (574)
58 PF01347 Vitellogenin_N: Lipop 98.3 7.4E-05 1.6E-09 78.8 21.7 238 189-426 360-617 (618)
59 KOG1078|consensus 98.3 0.0027 5.8E-08 64.6 29.7 219 192-431 283-532 (865)
60 PF05804 KAP: Kinesin-associat 98.3 0.0015 3.2E-08 68.0 28.8 322 37-430 289-675 (708)
61 PF04826 Arm_2: Armadillo-like 98.3 6.8E-05 1.5E-09 68.3 16.8 162 71-251 14-203 (254)
62 COG5116 RPN2 26S proteasome re 98.3 0.00011 2.4E-09 71.5 18.9 270 13-287 344-653 (926)
63 KOG1061|consensus 98.3 0.00054 1.2E-08 69.6 24.3 395 5-428 13-486 (734)
64 COG5181 HSH155 U2 snRNP splice 98.2 0.00054 1.2E-08 67.5 21.7 392 9-431 319-794 (975)
65 KOG1058|consensus 98.2 0.0023 5E-08 64.7 26.1 221 6-252 21-271 (948)
66 KOG1059|consensus 98.2 0.01 2.2E-07 60.1 30.1 241 88-365 126-399 (877)
67 cd00020 ARM Armadillo/beta-cat 98.1 2.3E-05 4.9E-10 63.2 10.2 90 39-130 8-119 (120)
68 COG5215 KAP95 Karyopherin (imp 98.1 0.007 1.5E-07 59.5 26.8 97 338-434 321-440 (858)
69 KOG0212|consensus 98.1 0.001 2.2E-08 65.0 21.1 89 191-281 167-276 (675)
70 KOG4535|consensus 98.1 0.0027 5.9E-08 61.0 23.2 292 162-492 257-606 (728)
71 PF04826 Arm_2: Armadillo-like 98.0 0.00052 1.1E-08 62.6 17.9 186 223-421 13-252 (254)
72 PF01347 Vitellogenin_N: Lipop 98.0 0.00037 8E-09 73.6 19.5 235 38-277 362-615 (618)
73 smart00638 LPD_N Lipoprotein N 98.0 0.00078 1.7E-08 70.4 21.4 227 38-275 326-569 (574)
74 COG5181 HSH155 U2 snRNP splice 98.0 0.0018 4E-08 64.0 21.4 102 29-130 511-632 (975)
75 cd00020 ARM Armadillo/beta-cat 98.0 6.5E-05 1.4E-09 60.5 10.0 90 339-430 8-119 (120)
76 KOG1077|consensus 98.0 0.0097 2.1E-07 60.0 26.1 104 23-126 93-211 (938)
77 COG5215 KAP95 Karyopherin (imp 98.0 0.012 2.6E-07 57.9 25.8 259 10-285 44-396 (858)
78 KOG0212|consensus 97.9 0.0079 1.7E-07 59.1 24.5 224 6-282 85-363 (675)
79 KOG1943|consensus 97.9 0.03 6.5E-07 59.4 29.5 413 5-432 341-882 (1133)
80 PF13513 HEAT_EZ: HEAT-like re 97.8 7E-05 1.5E-09 50.9 5.5 45 385-429 1-55 (55)
81 PF13513 HEAT_EZ: HEAT-like re 97.7 9.8E-05 2.1E-09 50.1 5.7 44 86-129 2-55 (55)
82 KOG1240|consensus 97.7 0.0012 2.7E-08 70.0 15.3 202 51-280 436-681 (1431)
83 KOG1240|consensus 97.5 0.004 8.7E-08 66.3 16.9 223 23-280 439-721 (1431)
84 KOG1943|consensus 97.5 0.16 3.5E-06 54.2 27.7 406 38-487 341-835 (1133)
85 COG5096 Vesicle coat complex, 97.4 0.0044 9.5E-08 64.3 15.3 163 5-190 18-196 (757)
86 KOG2025|consensus 97.2 0.04 8.6E-07 55.9 18.8 193 256-487 86-292 (892)
87 COG5096 Vesicle coat complex, 97.2 0.0018 3.9E-08 67.1 9.9 92 6-101 93-196 (757)
88 PF12717 Cnd1: non-SMC mitotic 97.1 0.014 3.1E-07 50.6 12.7 80 51-132 1-93 (178)
89 PF03130 HEAT_PBS: PBS lyase H 97.1 0.00064 1.4E-08 38.2 2.7 23 476-498 1-23 (27)
90 PF03130 HEAT_PBS: PBS lyase H 97.0 0.00073 1.6E-08 37.9 2.6 27 87-113 1-27 (27)
91 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0021 4.7E-08 49.0 5.5 56 70-128 28-93 (97)
92 KOG0915|consensus 96.9 1.1 2.4E-05 50.0 28.6 391 7-433 820-1308(1702)
93 PF02985 HEAT: HEAT repeat; I 96.8 0.0021 4.6E-08 37.5 3.8 27 104-130 2-28 (31)
94 KOG2025|consensus 96.8 0.049 1.1E-06 55.3 15.4 177 42-250 89-291 (892)
95 smart00567 EZ_HEAT E-Z type HE 96.8 0.0021 4.5E-08 37.2 3.3 30 385-414 1-30 (30)
96 KOG1077|consensus 96.7 0.85 1.8E-05 46.7 24.3 87 306-396 330-429 (938)
97 KOG0915|consensus 96.7 0.14 3.1E-06 56.4 19.0 285 72-433 821-1162(1702)
98 KOG4413|consensus 96.7 0.49 1.1E-05 43.8 22.6 60 70-131 83-157 (524)
99 PF12348 CLASP_N: CLASP N term 96.7 0.0076 1.7E-07 54.7 8.5 159 315-487 15-204 (228)
100 smart00567 EZ_HEAT E-Z type HE 96.7 0.0028 6.1E-08 36.6 3.6 29 86-114 2-30 (30)
101 PF12348 CLASP_N: CLASP N term 96.6 0.027 5.9E-07 51.1 11.6 94 338-433 94-208 (228)
102 KOG4535|consensus 96.6 0.047 1E-06 52.8 13.1 51 350-401 542-604 (728)
103 PF02985 HEAT: HEAT repeat; I 96.5 0.0059 1.3E-07 35.6 4.0 27 404-430 2-28 (31)
104 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.0079 1.7E-07 45.9 5.0 51 371-423 29-89 (97)
105 PF06685 DUF1186: Protein of u 96.2 0.14 3.1E-06 46.3 13.4 29 159-187 112-140 (249)
106 PF12717 Cnd1: non-SMC mitotic 96.2 0.026 5.7E-07 48.9 8.5 48 84-131 1-54 (178)
107 KOG2005|consensus 95.9 0.46 1E-05 48.2 16.2 267 38-375 415-712 (878)
108 KOG4413|consensus 95.8 1.1 2.3E-05 41.7 16.8 96 339-434 214-336 (524)
109 KOG1517|consensus 95.5 0.43 9.4E-06 50.9 14.7 167 301-487 468-669 (1387)
110 KOG1048|consensus 95.3 3.5 7.6E-05 43.0 20.3 104 71-189 235-349 (717)
111 KOG1517|consensus 95.3 2.5 5.3E-05 45.6 19.1 200 220-434 470-735 (1387)
112 PF10363 DUF2435: Protein of u 95.1 0.083 1.8E-06 39.9 6.2 76 4-81 2-89 (92)
113 KOG2032|consensus 95.0 2.9 6.2E-05 41.3 17.6 110 21-131 231-371 (533)
114 KOG2956|consensus 94.9 1.1 2.4E-05 43.7 14.4 27 191-217 448-474 (516)
115 PF06685 DUF1186: Protein of u 94.8 1.1 2.5E-05 40.6 13.6 72 309-380 115-196 (249)
116 COG5218 YCG1 Chromosome conden 94.5 1 2.2E-05 45.2 13.4 157 256-428 92-263 (885)
117 PF00514 Arm: Armadillo/beta-c 94.4 0.079 1.7E-06 33.1 3.9 30 101-130 11-40 (41)
118 PF05004 IFRD: Interferon-rela 94.1 3.3 7.2E-05 39.3 16.0 88 8-97 46-157 (309)
119 KOG0168|consensus 94.0 0.94 2E-05 47.4 12.6 160 39-218 168-362 (1051)
120 KOG0946|consensus 94.0 9.4 0.0002 40.1 23.3 126 3-131 20-195 (970)
121 COG5218 YCG1 Chromosome conden 93.9 1.6 3.5E-05 43.8 13.4 148 39-216 92-262 (885)
122 KOG4653|consensus 93.8 2.2 4.7E-05 44.9 14.7 124 6-131 728-876 (982)
123 PF11791 Aconitase_B_N: Aconit 93.7 0.32 7E-06 39.7 7.1 30 4-35 21-50 (154)
124 KOG2005|consensus 93.5 10 0.00022 39.0 19.2 92 339-432 641-744 (878)
125 KOG0168|consensus 93.2 1.8 3.9E-05 45.5 12.8 61 70-131 168-241 (1051)
126 PF05004 IFRD: Interferon-rela 92.9 6.3 0.00014 37.5 15.6 102 370-487 130-255 (309)
127 KOG1293|consensus 92.9 1.2 2.6E-05 45.3 11.0 133 349-498 388-544 (678)
128 KOG1048|consensus 92.8 6.1 0.00013 41.3 16.2 96 159-255 234-351 (717)
129 KOG1020|consensus 92.8 1.5 3.2E-05 49.0 12.4 93 37-131 815-921 (1692)
130 KOG3678|consensus 92.7 7.3 0.00016 38.2 15.5 128 5-134 180-339 (832)
131 PF00514 Arm: Armadillo/beta-c 92.7 0.23 4.9E-06 31.0 3.9 29 402-430 12-40 (41)
132 KOG2122|consensus 92.6 22 0.00048 40.4 22.0 217 203-432 327-602 (2195)
133 KOG1020|consensus 92.4 24 0.00051 40.2 22.0 54 103-189 606-659 (1692)
134 KOG1293|consensus 92.3 3.1 6.8E-05 42.4 13.1 134 203-347 389-546 (678)
135 KOG2160|consensus 92.3 1.7 3.7E-05 41.1 10.6 118 9-128 128-279 (342)
136 KOG4500|consensus 92.2 12 0.00026 36.5 24.6 98 337-434 314-434 (604)
137 KOG2122|consensus 92.2 21 0.00046 40.5 19.6 59 339-399 531-600 (2195)
138 PF10363 DUF2435: Protein of u 92.1 0.68 1.5E-05 34.9 6.5 74 39-114 4-89 (92)
139 KOG3678|consensus 91.8 12 0.00026 36.8 15.8 30 458-489 423-452 (832)
140 KOG2032|consensus 91.7 6.4 0.00014 38.9 14.0 120 7-130 260-415 (533)
141 PF12719 Cnd3: Nuclear condens 91.5 1.4 3E-05 41.8 9.4 85 344-430 33-142 (298)
142 KOG1820|consensus 91.5 3.3 7.1E-05 44.4 12.9 29 403-431 695-723 (815)
143 PF12719 Cnd3: Nuclear condens 91.4 1.1 2.3E-05 42.5 8.6 84 45-130 34-142 (298)
144 KOG4199|consensus 91.3 13 0.00029 35.0 29.1 102 370-488 329-443 (461)
145 PF08713 DNA_alkylation: DNA a 91.2 4.2 9E-05 36.2 12.0 131 340-494 53-191 (213)
146 KOG2160|consensus 90.9 8.2 0.00018 36.6 13.5 113 339-487 125-238 (342)
147 KOG0414|consensus 90.6 1.4 3.1E-05 47.8 9.2 107 23-131 939-1064(1251)
148 KOG1820|consensus 90.4 4.3 9.2E-05 43.6 12.5 175 8-201 256-458 (815)
149 KOG4653|consensus 90.4 15 0.00033 39.1 15.9 107 175-281 742-873 (982)
150 cd07064 AlkD_like_1 A new stru 90.3 13 0.00027 33.1 15.8 20 405-424 118-137 (208)
151 KOG0414|consensus 90.0 2.5 5.4E-05 46.1 10.4 91 39-130 920-1026(1251)
152 PF11698 V-ATPase_H_C: V-ATPas 89.6 0.59 1.3E-05 36.9 4.2 61 69-130 43-114 (119)
153 KOG1949|consensus 89.6 1 2.3E-05 46.1 6.9 122 8-132 177-332 (1005)
154 PF11791 Aconitase_B_N: Aconit 89.5 1.2 2.6E-05 36.5 6.0 93 37-129 21-121 (154)
155 PF05918 API5: Apoptosis inhib 89.2 7.4 0.00016 39.8 12.6 89 337-427 58-158 (556)
156 PF08713 DNA_alkylation: DNA a 89.1 4.1 8.9E-05 36.3 10.1 19 112-130 165-183 (213)
157 PF07571 DUF1546: Protein of u 88.2 2.1 4.6E-05 32.3 6.3 69 413-497 17-85 (92)
158 smart00185 ARM Armadillo/beta- 87.9 0.93 2E-05 27.8 3.7 29 102-130 12-40 (41)
159 KOG1949|consensus 87.6 1.7 3.6E-05 44.7 6.8 130 72-221 177-332 (1005)
160 PF05918 API5: Apoptosis inhib 87.5 3.2 7E-05 42.3 8.9 79 50-130 34-124 (556)
161 KOG2956|consensus 87.0 6.8 0.00015 38.5 10.3 120 8-130 332-476 (516)
162 KOG1243|consensus 86.8 2.7 5.9E-05 43.3 7.9 87 342-430 412-514 (690)
163 PF11865 DUF3385: Domain of un 86.4 6.2 0.00013 33.4 8.8 121 7-129 12-155 (160)
164 KOG4199|consensus 85.7 33 0.00071 32.5 26.8 62 372-433 375-446 (461)
165 KOG1243|consensus 85.7 1 2.3E-05 46.2 4.4 56 7-64 332-395 (690)
166 KOG1967|consensus 84.8 5.9 0.00013 42.2 9.3 129 69-214 867-1018(1030)
167 KOG2933|consensus 83.5 11 0.00024 35.1 9.4 121 38-183 88-228 (334)
168 COG5098 Chromosome condensatio 82.7 1.9 4.1E-05 44.3 4.6 107 23-131 912-1037(1128)
169 smart00185 ARM Armadillo/beta- 82.4 2.3 5E-05 25.9 3.6 27 403-429 13-39 (41)
170 cd00872 PI3Ka_I Phosphoinositi 82.3 19 0.00041 30.8 10.0 92 36-128 37-135 (171)
171 PF12460 MMS19_C: RNAPII trans 80.9 63 0.0014 32.2 15.8 91 339-433 272-396 (415)
172 PF12765 Cohesin_HEAT: HEAT re 80.2 2.2 4.8E-05 26.7 2.7 24 102-125 18-41 (42)
173 KOG2973|consensus 80.1 28 0.00061 32.5 10.7 55 40-98 5-69 (353)
174 KOG1932|consensus 80.0 1.1E+02 0.0023 34.2 17.4 220 42-280 646-929 (1180)
175 PF07571 DUF1546: Protein of u 79.9 5.9 0.00013 29.9 5.5 66 266-341 17-82 (92)
176 cd00869 PI3Ka_II Phosphoinosit 79.8 37 0.0008 28.9 10.9 92 36-128 37-135 (169)
177 cd00256 VATPase_H VATPase_H, r 79.5 70 0.0015 31.9 23.1 78 52-131 52-130 (429)
178 PF03224 V-ATPase_H_N: V-ATPas 79.4 14 0.00031 35.2 9.4 44 88-131 91-134 (312)
179 PF11865 DUF3385: Domain of un 79.3 20 0.00044 30.3 9.2 121 307-429 12-155 (160)
180 KOG0413|consensus 77.9 4.4 9.6E-05 43.3 5.6 79 51-130 944-1034(1529)
181 KOG2933|consensus 77.2 14 0.0003 34.5 7.9 123 339-486 89-231 (334)
182 KOG1967|consensus 76.4 6.4 0.00014 42.0 6.3 94 337-430 908-1023(1030)
183 PF12830 Nipped-B_C: Sister ch 76.2 6.3 0.00014 34.4 5.5 58 72-131 11-74 (187)
184 cd00864 PI3Ka Phosphoinositide 75.4 23 0.00049 29.7 8.3 78 36-114 37-117 (152)
185 COG5098 Chromosome condensatio 74.6 21 0.00045 37.2 9.0 89 39-129 300-413 (1128)
186 PF12830 Nipped-B_C: Sister ch 74.1 12 0.00027 32.5 6.8 57 340-398 10-72 (187)
187 PF09450 DUF2019: Domain of un 74.1 3.4 7.3E-05 31.8 2.8 38 72-111 50-87 (106)
188 PF12765 Cohesin_HEAT: HEAT re 71.6 4.6 9.9E-05 25.3 2.5 25 401-425 17-41 (42)
189 cd08050 TAF6 TATA Binding Prot 70.5 78 0.0017 30.6 11.9 136 39-189 179-340 (343)
190 smart00145 PI3Ka Phosphoinosit 70.3 59 0.0013 28.2 9.9 78 36-114 42-122 (184)
191 PF11701 UNC45-central: Myosin 70.2 20 0.00044 30.2 7.0 123 6-129 4-157 (157)
192 cd08050 TAF6 TATA Binding Prot 70.0 81 0.0018 30.5 11.9 136 192-336 179-340 (343)
193 KOG0413|consensus 70.0 7.3 0.00016 41.8 4.9 107 22-130 946-1072(1529)
194 cd00870 PI3Ka_III Phosphoinosi 69.9 31 0.00067 29.3 8.0 78 36-114 44-124 (166)
195 cd00872 PI3Ka_I Phosphoinositi 69.9 30 0.00066 29.5 7.9 76 336-412 37-115 (171)
196 KOG1525|consensus 69.2 12 0.00025 42.4 6.6 122 6-131 260-405 (1266)
197 PF13251 DUF4042: Domain of un 69.1 22 0.00049 30.7 7.0 59 72-131 104-174 (182)
198 PF14668 RICTOR_V: Rapamycin-i 67.9 17 0.00038 26.0 5.1 32 369-401 28-59 (73)
199 cd07064 AlkD_like_1 A new stru 67.1 91 0.002 27.6 15.2 79 46-125 54-138 (208)
200 PF00613 PI3Ka: Phosphoinositi 67.1 16 0.00034 31.7 5.8 78 36-114 43-123 (184)
201 cd00870 PI3Ka_III Phosphoinosi 66.1 38 0.00083 28.8 7.8 76 336-412 44-122 (166)
202 PF12074 DUF3554: Domain of un 66.1 1.1E+02 0.0023 29.6 12.1 60 71-131 24-90 (339)
203 cd03568 VHS_STAM VHS domain fa 65.7 77 0.0017 26.2 9.4 80 49-130 15-109 (144)
204 KOG2549|consensus 65.2 74 0.0016 32.3 10.5 141 39-195 208-375 (576)
205 PF11698 V-ATPase_H_C: V-ATPas 64.7 13 0.00029 29.4 4.4 71 338-430 43-114 (119)
206 KOG1991|consensus 63.4 1.4E+02 0.003 32.8 12.6 112 16-131 15-156 (1010)
207 KOG0946|consensus 62.4 2.3E+02 0.0049 30.5 26.4 102 385-496 301-412 (970)
208 TIGR00117 acnB aconitate hydra 62.0 52 0.0011 35.5 9.3 130 3-138 23-163 (844)
209 PF11701 UNC45-central: Myosin 61.6 97 0.0021 26.0 10.4 62 219-280 83-155 (157)
210 cd03568 VHS_STAM VHS domain fa 60.5 76 0.0016 26.3 8.4 83 348-432 14-111 (144)
211 KOG2274|consensus 60.5 1E+02 0.0022 33.4 10.9 120 348-487 14-155 (1005)
212 COG5110 RPN1 26S proteasome re 60.3 2.1E+02 0.0045 29.4 18.9 92 5-98 413-514 (881)
213 PF13251 DUF4042: Domain of un 59.8 58 0.0013 28.2 7.9 60 372-432 104-175 (182)
214 KOG2759|consensus 59.7 10 0.00022 36.9 3.4 61 69-130 366-437 (442)
215 PF07539 DRIM: Down-regulated 59.6 99 0.0021 25.5 9.0 27 104-130 19-45 (141)
216 cd00871 PI4Ka Phosphoinositide 59.3 1.1E+02 0.0024 26.3 9.3 74 37-114 40-117 (175)
217 PF09450 DUF2019: Domain of un 59.1 9.1 0.0002 29.5 2.5 41 340-380 49-89 (106)
218 cd00869 PI3Ka_II Phosphoinosit 58.8 66 0.0014 27.4 7.8 76 336-412 37-115 (169)
219 PF14668 RICTOR_V: Rapamycin-i 58.6 40 0.00086 24.1 5.5 43 56-99 5-57 (73)
220 cd03561 VHS VHS domain family; 58.2 93 0.002 25.2 8.6 82 349-432 15-113 (133)
221 KOG2274|consensus 56.8 59 0.0013 35.1 8.5 47 84-130 17-66 (1005)
222 cd03561 VHS VHS domain family; 56.6 86 0.0019 25.4 8.1 92 383-487 16-110 (133)
223 PF00790 VHS: VHS domain; Int 56.6 70 0.0015 26.2 7.7 31 100-130 83-117 (140)
224 cd00864 PI3Ka Phosphoinositide 55.5 86 0.0019 26.2 8.0 75 337-412 38-115 (152)
225 COG1698 Uncharacterized protei 54.9 44 0.00096 24.7 5.2 58 404-477 19-78 (93)
226 PF11940 DUF3458: Domain of un 54.9 2.2E+02 0.0047 27.9 18.7 92 176-267 220-312 (367)
227 COG1698 Uncharacterized protei 54.5 87 0.0019 23.2 7.5 64 257-331 19-85 (93)
228 PF00613 PI3Ka: Phosphoinositi 53.6 31 0.00068 29.9 5.3 77 335-412 42-121 (184)
229 KOG2549|consensus 53.6 1.1E+02 0.0024 31.2 9.4 53 349-401 309-371 (576)
230 smart00145 PI3Ka Phosphoinosit 53.5 85 0.0018 27.2 7.9 75 337-412 43-120 (184)
231 PF03224 V-ATPase_H_N: V-ATPas 53.0 2.1E+02 0.0045 27.2 11.9 26 71-98 107-132 (312)
232 PF11838 ERAP1_C: ERAP1-like C 51.7 1E+02 0.0022 29.3 9.2 62 51-113 168-229 (324)
233 cd00871 PI4Ka Phosphoinositide 51.5 1.2E+02 0.0027 25.9 8.4 70 9-81 42-117 (175)
234 PRK15174 Vi polysaccharide exp 50.4 3.5E+02 0.0076 29.0 31.9 63 68-130 93-158 (656)
235 PF13429 TPR_15: Tetratricopep 50.2 85 0.0018 29.1 8.2 95 190-284 163-263 (280)
236 smart00288 VHS Domain present 50.2 53 0.0011 26.7 5.9 30 101-130 79-110 (133)
237 PF11838 ERAP1_C: ERAP1-like C 50.0 2.3E+02 0.005 26.8 16.4 60 351-411 168-227 (324)
238 PF12530 DUF3730: Protein of u 49.6 2E+02 0.0044 26.0 16.3 33 337-369 120-153 (234)
239 PF08167 RIX1: rRNA processing 49.4 83 0.0018 26.7 7.2 87 40-129 27-141 (165)
240 PF08506 Cse1: Cse1; InterPro 49.0 1.2E+02 0.0027 29.7 9.1 118 8-126 213-370 (370)
241 KOG1525|consensus 48.1 1.4E+02 0.003 34.4 10.2 126 69-219 259-404 (1266)
242 KOG0905|consensus 46.8 4.9E+02 0.011 29.7 14.3 95 36-131 856-957 (1639)
243 PF12460 MMS19_C: RNAPII trans 46.2 3.2E+02 0.0068 27.3 14.8 119 7-130 191-351 (415)
244 KOG0392|consensus 46.1 56 0.0012 36.7 6.6 91 38-130 816-924 (1549)
245 cd03569 VHS_Hrs_Vps27p VHS dom 45.8 1.7E+02 0.0037 24.1 8.5 60 69-130 41-113 (142)
246 TIGR00117 acnB aconitate hydra 45.8 1.3E+02 0.0028 32.7 9.1 93 37-129 24-124 (844)
247 PF10274 ParcG: Parkin co-regu 45.3 96 0.0021 26.8 6.8 57 7-65 40-107 (183)
248 PLN00094 aconitate hydratase 2 44.7 1.4E+02 0.0031 32.5 9.2 129 3-138 92-231 (938)
249 PF08167 RIX1: rRNA processing 44.4 1.3E+02 0.0029 25.4 7.7 27 403-431 117-143 (165)
250 KOG4500|consensus 43.7 3.4E+02 0.0075 27.0 13.7 93 38-130 315-430 (604)
251 KOG2973|consensus 43.6 2.9E+02 0.0063 26.2 21.5 58 71-132 5-72 (353)
252 cd03567 VHS_GGA VHS domain fam 41.9 2E+02 0.0042 23.7 8.4 80 49-130 16-115 (139)
253 PF13001 Ecm29: Proteasome sta 41.3 4.2E+02 0.009 27.3 23.6 112 322-433 298-445 (501)
254 smart00288 VHS Domain present 40.1 1.8E+02 0.0039 23.6 7.5 90 384-487 17-109 (133)
255 TIGR02917 PEP_TPR_lipo putativ 39.9 5.3E+02 0.012 28.1 44.3 145 328-496 743-893 (899)
256 COG5110 RPN1 26S proteasome re 39.6 4.5E+02 0.0097 27.1 18.7 90 38-129 413-514 (881)
257 KOG1932|consensus 39.3 6.2E+02 0.013 28.7 19.3 70 62-132 635-706 (1180)
258 PF07539 DRIM: Down-regulated 38.8 1.5E+02 0.0033 24.4 6.8 70 338-411 17-97 (141)
259 PF00790 VHS: VHS domain; Int 38.8 2.2E+02 0.0047 23.3 8.9 90 384-487 22-116 (140)
260 PRK09238 bifunctional aconitat 37.8 1.5E+02 0.0033 32.2 8.3 127 3-136 23-160 (835)
261 PF08506 Cse1: Cse1; InterPro 37.8 2.2E+02 0.0048 27.9 9.0 47 380-426 317-370 (370)
262 COG1049 AcnB Aconitase B [Ener 37.6 2.1E+02 0.0046 29.6 8.7 127 4-137 24-161 (852)
263 COG5369 Uncharacterized conser 37.4 60 0.0013 32.9 4.9 95 36-132 429-546 (743)
264 KOG1992|consensus 36.4 6E+02 0.013 27.7 24.4 121 6-130 3-158 (960)
265 PF12530 DUF3730: Protein of u 36.3 3.3E+02 0.0071 24.6 16.5 32 190-221 120-152 (234)
266 PF10274 ParcG: Parkin co-regu 36.1 2.1E+02 0.0046 24.8 7.4 27 403-429 81-107 (183)
267 PF13429 TPR_15: Tetratricopep 36.0 2.3E+02 0.0049 26.2 8.7 161 37-221 94-264 (280)
268 KOG2011|consensus 35.6 1.6E+02 0.0035 32.9 8.1 117 84-215 300-430 (1048)
269 cd03569 VHS_Hrs_Vps27p VHS dom 34.8 2.6E+02 0.0056 23.0 7.9 89 384-487 21-112 (142)
270 PF14664 RICTOR_N: Rapamycin-i 34.6 4.5E+02 0.0098 25.8 16.5 118 8-129 28-174 (371)
271 COG4783 Putative Zn-dependent 33.8 4.1E+02 0.0089 26.8 9.9 94 38-131 324-423 (484)
272 KOG1222|consensus 33.6 5.2E+02 0.011 26.2 25.3 86 68-170 303-398 (791)
273 PF01851 PC_rep: Proteasome/cy 32.8 89 0.0019 18.5 3.4 29 391-419 2-34 (35)
274 PRK14015 pepN aminopeptidase N 32.7 7.4E+02 0.016 27.7 25.7 89 177-267 685-776 (875)
275 PF10304 DUF2411: Domain of un 32.7 95 0.0021 18.6 3.5 18 112-129 16-33 (36)
276 PF09759 Atx10homo_assoc: Spin 31.8 99 0.0021 23.8 4.4 30 404-433 30-61 (102)
277 PLN00094 aconitate hydratase 2 31.5 3E+02 0.0064 30.3 9.1 91 37-129 93-191 (938)
278 TIGR02917 PEP_TPR_lipo putativ 31.1 7.3E+02 0.016 27.1 41.9 126 306-431 755-886 (899)
279 cd00256 VATPase_H VATPase_H, r 29.8 5.9E+02 0.013 25.6 23.1 70 402-487 353-423 (429)
280 COG5330 Uncharacterized protei 29.6 3.4E+02 0.0074 26.3 8.4 60 5-66 7-75 (364)
281 cd06561 AlkD_like A new struct 29.5 3.7E+02 0.008 23.2 15.1 25 405-429 108-132 (197)
282 PF11940 DUF3458: Domain of un 28.6 5.7E+02 0.012 25.1 10.6 86 30-115 227-313 (367)
283 PF15565 Imm16: Immunity prote 28.1 2.2E+02 0.0048 22.1 5.7 53 57-110 20-72 (106)
284 PF04388 Hamartin: Hamartin pr 28.0 5.4E+02 0.012 27.6 10.6 117 4-130 3-139 (668)
285 PF08389 Xpo1: Exportin 1-like 27.8 3.2E+02 0.007 22.0 9.7 44 86-130 3-53 (148)
286 COG5369 Uncharacterized conser 27.7 1.7E+02 0.0037 29.9 6.2 97 334-432 427-546 (743)
287 PF09324 DUF1981: Domain of un 27.6 2.5E+02 0.0055 20.7 6.7 44 84-127 31-84 (86)
288 KOG1992|consensus 27.3 3.8E+02 0.0083 29.1 8.9 92 40-131 4-117 (960)
289 cd03567 VHS_GGA VHS domain fam 27.0 3.6E+02 0.0077 22.2 9.2 81 349-431 16-116 (139)
290 PRK15174 Vi polysaccharide exp 26.6 8.2E+02 0.018 26.2 31.0 218 23-265 79-312 (656)
291 PRK04330 hypothetical protein; 26.1 2.8E+02 0.0061 20.7 7.7 24 309-332 59-82 (88)
292 KOG1248|consensus 26.0 1E+03 0.022 27.2 17.1 201 49-264 665-909 (1176)
293 TIGR02414 pepN_proteo aminopep 25.6 9.7E+02 0.021 26.7 26.2 91 177-267 675-766 (863)
294 PRK04330 hypothetical protein; 25.5 2.9E+02 0.0063 20.6 6.9 27 103-129 56-84 (88)
295 KOG0392|consensus 25.0 8.5E+02 0.018 28.2 11.2 96 102-217 816-922 (1549)
296 KOG1993|consensus 25.0 3.4E+02 0.0074 29.3 8.0 101 109-233 7-130 (978)
297 KOG1087|consensus 24.5 1.6E+02 0.0034 29.8 5.5 82 47-130 14-111 (470)
298 PRK09238 bifunctional aconitat 24.4 4.4E+02 0.0094 28.9 8.9 91 37-129 24-122 (835)
299 PF12074 DUF3554: Domain of un 24.1 6.5E+02 0.014 24.2 11.7 75 23-99 3-89 (339)
300 COG1600 Uncharacterized Fe-S p 23.8 99 0.0021 29.7 3.8 39 53-96 298-336 (337)
301 COG1600 Uncharacterized Fe-S p 23.8 92 0.002 29.9 3.6 41 384-427 296-336 (337)
302 KOG4646|consensus 23.6 3E+02 0.0064 22.7 5.7 59 338-398 58-126 (173)
303 COG3118 Thioredoxin domain-con 23.5 6.3E+02 0.014 23.8 13.7 126 160-285 154-288 (304)
304 KOG2759|consensus 23.3 7.5E+02 0.016 24.6 21.9 71 401-487 365-436 (442)
305 cd06561 AlkD_like A new struct 23.2 4.8E+02 0.011 22.4 11.5 120 8-131 41-170 (197)
306 KOG1991|consensus 23.1 1.1E+03 0.024 26.4 12.9 88 42-129 5-116 (1010)
307 PF04499 SAPS: SIT4 phosphatas 22.9 2.3E+02 0.005 28.9 6.5 66 182-251 25-90 (475)
308 KOG2137|consensus 22.9 3E+02 0.0066 29.2 7.2 92 38-130 389-495 (700)
309 COG3118 Thioredoxin domain-con 22.3 6.7E+02 0.014 23.7 16.0 126 69-219 152-286 (304)
310 KOG0904|consensus 21.7 1E+03 0.022 26.3 10.7 66 62-128 603-675 (1076)
311 PF09759 Atx10homo_assoc: Spin 21.3 3.5E+02 0.0075 20.9 5.6 26 40-65 30-57 (102)
312 KOG2199|consensus 20.9 7.6E+02 0.016 24.3 8.8 81 49-131 23-118 (462)
313 PF04499 SAPS: SIT4 phosphatas 20.3 3E+02 0.0064 28.1 6.6 82 7-98 9-90 (475)
No 1
>KOG0567|consensus
Probab=99.98 E-value=2.5e-30 Score=222.62 Aligned_cols=283 Identities=57% Similarity=0.904 Sum_probs=259.6
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP 85 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~ 85 (500)
.++.+.+.|.+.+.+...|+.|+..|...+++..+..+.+.+.|++...+...+++||++++..+++.|...|.|.++.|
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p 83 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP 83 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence 68889999998777778999999999999999899999999998899999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHH
Q psy10052 86 MVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKE 165 (500)
Q Consensus 86 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 165 (500)
.||..|+++||.++.+...+.+.++.+||-..|+..|..|+.++.|....... .-..+|.++||+++.. ...+..+..
T Consensus 84 mvRhEAaealga~~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa~p~~-~ssv~~lr~ 161 (289)
T KOG0567|consen 84 MVRHEAAEALGAIGDPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPAPPAN-LSSVHELRA 161 (289)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccccCCCCCccc-cccHHHHHH
Confidence 99999999999999999999999999999999999999999999986644321 2235788899999853 678999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHH
Q psy10052 166 ILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECA 245 (500)
Q Consensus 166 ~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~ 245 (500)
.+.|.+...+.|+.|.+.|+++|..+++..+...+.+++...|+.++..+|++..+.++|.|.+.|.+..++|+||..|+
T Consensus 162 ~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaA 241 (289)
T KOG0567|consen 162 ELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAA 241 (289)
T ss_pred HHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHH
Confidence 99888888899999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHh
Q psy10052 246 EALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL 290 (500)
Q Consensus 246 ~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~ 290 (500)
+|||.++++++++.|.+++.|+.+.||..|..+|..+.+.++..+
T Consensus 242 eALGaIa~e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 242 EALGAIADEDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred HHHHhhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999987777665443
No 2
>PRK09687 putative lyase; Provisional
Probab=99.97 E-value=1.2e-28 Score=227.66 Aligned_cols=243 Identities=21% Similarity=0.160 Sum_probs=217.8
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCC-----ccHHHHHHH
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDS-----DANDILRQV 77 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~-----~~~~~L~~~ 77 (500)
.+.+++.|+..|.|++.. +|..|+..|+.++++.+++.+.++++|+++.+|..++++|++++.+ .+++.|..+
T Consensus 21 ~~~~~~~L~~~L~d~d~~--vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSL--KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred hhccHHHHHHHHhCCCHH--HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 356789999999999986 9999999999999999999999999999999999999999999864 377888877
Q ss_pred -hhccCCCHHHHHHHHHHHHhcCCh------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCC
Q psy10052 78 -LEDKSQEPMVRHEAAEALGAIGDK------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDP 150 (500)
Q Consensus 78 -L~~~~~d~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 150 (500)
++|+ ++.||..|+.+||.++.. .+++.+..++.|+++.||..++.+|++++.
T Consensus 99 ~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------------------- 157 (280)
T PRK09687 99 ALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------------------- 157 (280)
T ss_pred HhcCC--CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------------------
Confidence 5666 899999999999999643 346777788899999999999999999886
Q ss_pred CCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC--ChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHH
Q psy10052 151 TPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN--SVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALT 228 (500)
Q Consensus 151 ~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~--~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~ 228 (500)
+..++.|+..+.|+ ++.+|..|+.+|+.++ ++.+++.|+..|+|+++.||..++.+||+++++.++|.|+
T Consensus 158 ------~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li 229 (280)
T PRK09687 158 ------EAAIPLLINLLKDP--NGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLI 229 (280)
T ss_pred ------HHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHH
Confidence 55799999999654 5579999999999875 6789999999999999999999999999999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhc-CCcHHHHHHHHHHhh
Q psy10052 229 SALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLS-DEKVVVRQSCEIALD 280 (500)
Q Consensus 229 ~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~al~ 280 (500)
+.+.++ + ++..++.+||.+|++.++|.|..++. ++|..|+..+..++.
T Consensus 230 ~~L~~~--~--~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 230 KELKKG--T--VGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHcCC--c--hHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 999873 2 78899999999999999999999996 889999999988875
No 3
>PRK09687 putative lyase; Provisional
Probab=99.96 E-value=6.1e-27 Score=216.34 Aligned_cols=206 Identities=20% Similarity=0.178 Sum_probs=131.1
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----hhHHHHHHH
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----SSISILEKY 110 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----~~~~~L~~~ 110 (500)
.....+.|.+.|.|++..||..|+++|+.++++.+.+.+..+++++ ++.+|..++++||.++.+ .+++.|..+
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSK--NPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999888 899999999999999864 477888876
Q ss_pred -hcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC
Q psy10052 111 -AQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS 189 (500)
Q Consensus 111 -l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~ 189 (500)
++|+++.||..|+.+|+.++...... ....+..+...+.|+ ++.+|..++.+|+++++
T Consensus 99 ~~~D~d~~VR~~A~~aLG~~~~~~~~~-------------------~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 99 ALEDKSACVRASAINATGHRCKKNPLY-------------------SPKIVEQSQITAFDK--STNVRFAVAFALSVIND 157 (280)
T ss_pred HhcCCCHHHHHHHHHHHhccccccccc-------------------chHHHHHHHHHhhCC--CHHHHHHHHHHHhccCC
Confidence 68999999999999999886321000 011233333444322 33345555555555544
Q ss_pred hhhHHHHHhhccCCCHhHHHHHHHHHhccC--CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcC
Q psy10052 190 VESTLALTEGLSHGSSLYRHEIAFVLGQMQ--NPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSD 266 (500)
Q Consensus 190 ~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~--~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~ 266 (500)
+.+++.|+.+|+|+++.||..++.+||.++ .+.+++.|+..+.| .++.||..|+.+||.++++.+++.|.+.+.+
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D--~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~ 234 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD--KNEEIRIEAIIGLALRKDKRVLSVLIKELKK 234 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHccCChhHHHHHHHHHcC
Confidence 445555555555444455555555554442 33444444444443 2344444444444444444444444444433
No 4
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.95 E-value=1.3e-25 Score=241.44 Aligned_cols=285 Identities=21% Similarity=0.193 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 52 ALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 52 ~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
+..|..++..| ....++.|.+.|+|+ |+.||+.|+..|+.++.+.+++.|.++|+|+++.||..|+.+|+++..
T Consensus 608 ~~~~~~~~~~l----~~~~~~~L~~~L~D~--d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 608 PSPRILAVLAL----DAPSVAELAPYLADP--DPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred chHHHHHHHhc----cchhHHHHHHHhcCC--CHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34444444444 333567888888888 788888888888888888888888888888888888888888888753
Q ss_pred hccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHH
Q psy10052 132 VTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEI 211 (500)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a 211 (500)
. ....+.|...|.+ +++.+|..|+..|+.++... ...+++.|.|+++.||..+
T Consensus 682 ~------------------------~~~~~~L~~~L~~--~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~A 734 (897)
T PRK13800 682 V------------------------LPPAPALRDHLGS--PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEA 734 (897)
T ss_pred c------------------------cCchHHHHHHhcC--CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHH
Confidence 1 1124556677754 45678888888887765432 3466677788888888888
Q ss_pred HHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCchH--HHHHHHhhcCCcHHHHHHHHHHhhhccccchhH
Q psy10052 212 AFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPEC--YDVLRKYLSDEKVVVRQSCEIALDMCDYENSVE 289 (500)
Q Consensus 212 ~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~--~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~ 289 (500)
+.+|+.++.. +.|..++.| .++.||..++.+|+.++.... ++.|..+++|+++.||..++.+|+
T Consensus 735 v~aL~~~~~~---~~l~~~l~D--~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg--------- 800 (897)
T PRK13800 735 VRALVSVDDV---ESVAGAATD--ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALA--------- 800 (897)
T ss_pred HHHHhcccCc---HHHHHHhcC--CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHH---------
Confidence 8888877543 445666766 457788888888887776543 567777777777766666666555
Q ss_pred hHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChh-hHHHHHHHhcCCCHHHHHHHHHHHhccCCC
Q psy10052 290 LQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT-AIQCISEAFADKSALLKHELAYCLGQMKDS 368 (500)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~-~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 368 (500)
.++.+. ..+.+...|.|+++.||..|+++|+.++.+
T Consensus 801 -------------------------------------------~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~ 837 (897)
T PRK13800 801 -------------------------------------------ELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD 837 (897)
T ss_pred -------------------------------------------hcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc
Confidence 334333 235677788888888999999999998888
Q ss_pred ccHHHHHHHhhcCCCCHHHHHHHHHHHhhc-CCccHHHHHHHhhcCCCHhHHHHHHHHHHH
Q psy10052 369 DANDILRQVLEDKSQEPMVRHEAAEALGAI-GDKSSISILEKYAQDPVKEVSETCYLALKR 428 (500)
Q Consensus 369 ~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~-~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 428 (500)
.+++.|..++.|+ ++.||..|+.+|+.+ +++...+.|...++|.++.||..|..+|..
T Consensus 838 ~a~~~L~~~L~D~--~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 838 VAVPALVEALTDP--HLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred chHHHHHHHhcCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8889999999887 788999999999887 567788888888888899999999888863
No 5
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.95 E-value=1.9e-25 Score=240.03 Aligned_cols=282 Identities=21% Similarity=0.220 Sum_probs=231.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-h
Q psy10052 23 ERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-K 101 (500)
Q Consensus 23 ~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-~ 101 (500)
.|..++..| +...++.|.+.|+|+++.||..|+..|+.++.+.+++.|..+|.|+ ++.||..|+.+|+.++. .
T Consensus 610 ~~~~~~~~l----~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~ 683 (897)
T PRK13800 610 PRILAVLAL----DAPSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDG--AAAVRRAAAEGLRELVEVL 683 (897)
T ss_pred HHHHHHHhc----cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhcc
Confidence 677776666 3447889999999999999999999999999999999999999988 89999999999999853 2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHH
Q psy10052 102 SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 181 (500)
Q Consensus 102 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~ 181 (500)
...+.|...|+++++.||..|+.+|+.++. .....+++.|.| +++.+|..|+
T Consensus 684 ~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~--------------------------~~~~~l~~~L~D--~d~~VR~~Av 735 (897)
T PRK13800 684 PPAPALRDHLGSPDPVVRAAALDVLRALRA--------------------------GDAALFAAALGD--PDHRVRIEAV 735 (897)
T ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------------------CCHHHHHHHhcC--CCHHHHHHHH
Confidence 345778899999999999999999998752 124567788854 5677999999
Q ss_pred HHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCc--HHHHHHHhhccCCCHHHHHHHHHHHhhcCCch-HHH
Q psy10052 182 FKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSS--IPALTSALEDQTQNEMVRHECAEALGAIATPE-CYD 258 (500)
Q Consensus 182 ~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~--i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~-~~~ 258 (500)
.+|+.++.. +.|..++.|+++.||..++.+|+.++.... ++.|..+++| .++.||..|+.+|+.++.+. ..+
T Consensus 736 ~aL~~~~~~---~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D--~d~~VR~aA~~aLg~~g~~~~~~~ 810 (897)
T PRK13800 736 RALVSVDDV---ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGD--PDPLVRAAALAALAELGCPPDDVA 810 (897)
T ss_pred HHHhcccCc---HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcC--CCHHHHHHHHHHHHhcCCcchhHH
Confidence 999998765 456778899999999999999999986654 7889999988 46999999999999999765 346
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChh
Q psy10052 259 VLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT 338 (500)
Q Consensus 259 ~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~ 338 (500)
.+...++|++|.||..|+.+|+ .++.++
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~----------------------------------------------------~l~~~~ 838 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALA----------------------------------------------------GAAADV 838 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHH----------------------------------------------------hccccc
Confidence 7888888888877777766665 334455
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCccHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQM-KDSDANDILRQVLEDKSQEPMVRHEAAEALGA 397 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l-~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~ 397 (500)
+++.|..+|+|+++.||..++++|+.+ +++.+.+.|...++|. ++.||..|.++|..
T Consensus 839 a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 839 AVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALTDS--DADVRAYARRALAH 896 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence 677778888888888888888888887 4566778888888776 78888888888753
No 6
>KOG0567|consensus
Probab=99.95 E-value=7.3e-26 Score=195.21 Aligned_cols=274 Identities=38% Similarity=0.653 Sum_probs=243.2
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHH
Q psy10052 160 INKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEM 239 (500)
Q Consensus 160 ~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~ 239 (500)
+..+.+.|.+.+....-|..|+..|...+.+..+..+.+...+++...++..+..||+++...+++.|...+.|.+..|.
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pm 84 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPM 84 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccchH
Confidence 56677788776666667999999999999999999999999888889999999999999999999999999999888999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHH-HHhhhccCCC---ChHHHHHHHHHhh
Q psy10052 240 VRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQY-ADTLCKFKMI---PEEKILLIGQVLK 315 (500)
Q Consensus 240 vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~-~~~l~~~~~~---~~~~~~~l~~~l~ 315 (500)
||..|.++||.++.+...+.+.++.+||-..|+..|..|+.++.|........ ...+...+.. ....+..+...+.
T Consensus 85 vRhEAaealga~~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~ll 164 (289)
T KOG0567|consen 85 VRHEAAEALGAIGDPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELL 164 (289)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887765432210 0111122221 2345778999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10052 316 DSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEAL 395 (500)
Q Consensus 316 ~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL 395 (500)
+.+.+...|+.|.++|.++|+++++..|++-+.+++...|..++.++|++..+.+++.|.+.|.+..++++||..|++||
T Consensus 165 d~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeAL 244 (289)
T KOG0567|consen 165 DETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEAL 244 (289)
T ss_pred hcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 396 GAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 396 ~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
|.|+++++++.|.++++|+++-||..+..+|..+...+
T Consensus 245 GaIa~e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 245 GAIADEDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred HhhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987654
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=1e-19 Score=200.26 Aligned_cols=453 Identities=17% Similarity=0.120 Sum_probs=324.2
Q ss_pred hHhHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC---C--------cchHHHHHHHccCCCHHHHHHHHHHHHccC-----
Q psy10052 4 EEKILLIGQVLKDSSKPL-KERFRALFTLKNIG---G--------KTAIQCISEAFADESALLKHELAYCLGQMK----- 66 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~-~~R~~A~~~L~~~~---~--------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~----- 66 (500)
...++.|...|++++... .++..|...|.++. + ...++.|+++|+++++.++..|+++|..+-
T Consensus 143 ~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee 222 (2102)
T PLN03200 143 EGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES 222 (2102)
T ss_pred cCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 456888999999875321 13444445544332 1 247889999999999999999999876541
Q ss_pred ------CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCH---------HHHH
Q psy10052 67 ------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVK---------EVSE 120 (500)
Q Consensus 67 ------~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~---------~vr~ 120 (500)
...++|.|+++|.+.+ ++.+|..|+++|+.+.. .+.++.|+.++..++. .++.
T Consensus 223 ~~~aVIeaGaVP~LV~LL~sg~-~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe 301 (2102)
T PLN03200 223 SISKVLDAGAVKQLLKLLGQGN-EVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQE 301 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHccCC-ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHH
Confidence 1457899999997643 67899999999998764 2468999999876553 4589
Q ss_pred HHHHHHHHhchhccchhhccccC--cC---------------C--CCCCC----CCCCCcccHHHHHHHhcCCCcCHHHH
Q psy10052 121 TCYLALKRIQFVTEEDKQKDTGN--IY---------------G--SVDPT----PPLDDVSDINKLKEILLNENEDLFMR 177 (500)
Q Consensus 121 ~a~~aL~~~~~~~~~~~~~~~~~--~~---------------~--~~~~~----~~~~~~~~~~~L~~~l~d~~~~~~~r 177 (500)
+|+++|+++..........+... .. . ..+.. ..+........|++++.++++.+ +.
T Consensus 302 ~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~-vq 380 (2102)
T PLN03200 302 NAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKL-VQ 380 (2102)
T ss_pred HHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCch-hH
Confidence 99999999875432100001000 00 0 00000 00000123577888887665443 34
Q ss_pred HHHHHHHHc----------CCChhhHHHHHhhccCCCHhHHHHHHHHHhccC-----------CCCcHHHHHHHhhccCC
Q psy10052 178 YKAMFKLRD----------INSVESTLALTEGLSHGSSLYRHEIAFVLGQMQ-----------NPSSIPALTSALEDQTQ 236 (500)
Q Consensus 178 ~~A~~~L~~----------~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~-----------~~~~i~~L~~~l~~~~~ 236 (500)
..+..+|+. +.+.++++.|+.+|...+.+++..++.+|..+. ....+|.|+++|.+.
T Consensus 381 e~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-- 458 (2102)
T PLN03200 381 ERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-- 458 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC--
Confidence 455555533 233467889999999989999999999986665 245799999999874
Q ss_pred CHHHHHHHHHHHhhcCC-----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChH
Q psy10052 237 NEMVRHECAEALGAIAT-----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEE 305 (500)
Q Consensus 237 ~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~ 305 (500)
+..++..+++.++.+.. .+++|.|.++|++++..++..|+++|+++............. ..
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~--------aG 530 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVES--------AG 530 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHH--------CC
Confidence 57899999999987653 257999999999999999999999999887643222111111 12
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHhcCCCHHHHHHHHHHHhccC--------------CC
Q psy10052 306 KILLIGQVLKDSSKPLKERFRALFTLKNI---GGKTAIQCISEAFADKSALLKHELAYCLGQMK--------------DS 368 (500)
Q Consensus 306 ~~~~l~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~--------------~~ 368 (500)
.++.|.+++.+.+ ...+..|+++|.++ ++...++.++.+|..+++.++..++++++.+- ..
T Consensus 531 AIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ 608 (2102)
T PLN03200 531 AVPALLWLLKNGG--PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAN 608 (2102)
T ss_pred CHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcc
Confidence 4668888888775 35778888887766 66778889999999999999999999887651 23
Q ss_pred ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC-----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhccc
Q psy10052 369 DANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDK 437 (500)
Q Consensus 369 ~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~ 437 (500)
.+++.|.+++.+. +..++..|+.+|.++.. .+.++.|..++.+.+..++..++++|.++........
T Consensus 609 ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q 686 (2102)
T PLN03200 609 DALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENR 686 (2102)
T ss_pred ccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHH
Confidence 5899999999987 79999999999988743 3578999999999999999999999999875332211
Q ss_pred ccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 438 QKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
.. ..-....++.|.++|.++ +..++..|+.+|.++
T Consensus 687 ~~-------------~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALanL 721 (2102)
T PLN03200 687 KV-------------SYAAEDAIKPLIKLAKSS--SIEVAEQAVCALANL 721 (2102)
T ss_pred HH-------------HHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHHH
Confidence 00 001236899999999644 556999999999999
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=1.9e-19 Score=198.14 Aligned_cols=443 Identities=16% Similarity=0.110 Sum_probs=310.0
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--------------cchHHHHHHHccCCC---HHHHHHHHHHHHccC
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGG--------------KTAIQCISEAFADES---ALLKHELAYCLGQMK 66 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~--------------~~~~~~L~~~l~~~~---~~vR~~a~~~L~~~~ 66 (500)
...++.|+.+|++.+.+ .|..|+..|..+.. ..+++.|+.++++++ ..++..++-+|..+.
T Consensus 98 ~GaIppLV~LL~sGs~e--aKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs 175 (2102)
T PLN03200 98 GGCIPPLLSLLKSGSAE--AQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLC 175 (2102)
T ss_pred cCChHHHHHHHHCCCHH--HHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHh
Confidence 46788999999998765 99999888887632 346889999998764 445666666665441
Q ss_pred -----------CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-----------ChhhHHHHHHHhcC-CCHHHHHHHH
Q psy10052 67 -----------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-----------DKSSISILEKYAQD-PVKEVSETCY 123 (500)
Q Consensus 67 -----------~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d-~~~~vr~~a~ 123 (500)
....++.|+.+|+++ ++.++..|+.+|..+. ..+.+|.|++++.+ +++.+|+.|+
T Consensus 176 ~~~en~~~~IIeaGaVp~LV~LLsS~--d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA 253 (2102)
T PLN03200 176 GSTDGFWSATLEAGGVDILVKLLSSG--NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAA 253 (2102)
T ss_pred cCccchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHH
Confidence 134789999999987 7999999999886543 12568999999965 5679999999
Q ss_pred HHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCc-------CHHHHHHHHHHHHcCCCh--hh--
Q psy10052 124 LALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENE-------DLFMRYKAMFKLRDINSV--ES-- 192 (500)
Q Consensus 124 ~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~-------~~~~r~~A~~~L~~~~~~--~~-- 192 (500)
++|.++..........+.+ .+.++.|++++..++. +...+..|+++|+++... ..
T Consensus 254 ~AL~nLAs~s~e~r~~Iv~--------------aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~ 319 (2102)
T PLN03200 254 GALEALSSQSKEAKQAIAD--------------AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL 319 (2102)
T ss_pred HHHHHHhcCCHHHHHHHHH--------------CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence 9999988643221110000 2347777777753321 122355666666653221 11
Q ss_pred --------------------------------------------HHHHHhhccCCCHh-HHHHHHHHHhc----------
Q psy10052 193 --------------------------------------------TLALTEGLSHGSSL-YRHEIAFVLGQ---------- 217 (500)
Q Consensus 193 --------------------------------------------i~~l~~~L~~~~~~-vr~~a~~aL~~---------- 217 (500)
...|.++++++++. +...+..+|..
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~ 399 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK 399 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHH
Confidence 23455555554333 34444555422
Q ss_pred cCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccc
Q psy10052 218 MQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT-----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYEN 286 (500)
Q Consensus 218 ~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~ 286 (500)
+.+.++++.|+.++... +.+++..++++|..+.. .++++.|.++|.+++..++..+++.++.+....
T Consensus 400 L~~~daik~LV~LL~~~--~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n 477 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMA--TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV 477 (2102)
T ss_pred HHhccchhhhhhhhccC--CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 22345677777777653 46788888888765542 246888899998888888888888888776544
Q ss_pred hhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHH
Q psy10052 287 SVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLK 355 (500)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr 355 (500)
......... ...++.|.++|..++. .++..|+++|+++.. ..+++.|+++|++.++.++
T Consensus 478 denr~aIie--------aGaIP~LV~LL~s~~~--~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q 547 (2102)
T PLN03200 478 DESKWAITA--------AGGIPPLVQLLETGSQ--KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQ 547 (2102)
T ss_pred HHHHHHHHH--------CCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 332211111 2357899999987664 588999999997653 2467889999999999999
Q ss_pred HHHHHHHhcc---CCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--------------CccHHHHHHHhhcCCCHhH
Q psy10052 356 HELAYCLGQM---KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG--------------DKSSISILEKYAQDPVKEV 418 (500)
Q Consensus 356 ~~a~~aL~~l---~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--------------~~~~~~~L~~~l~d~~~~v 418 (500)
..++++|.++ ++...++.|+.++... ++.++..++++|+++- ..+.++.|.++++++++.+
T Consensus 548 ~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsd--d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~i 625 (2102)
T PLN03200 548 EIAAKTLTKLVRTADAATISQLTALLLGD--LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEET 625 (2102)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHH
Confidence 9999999988 5566889999998766 6899999999997762 2357899999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc---CChhhHH
Q psy10052 419 SETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI---NSVESTL 494 (500)
Q Consensus 419 r~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~---g~~~~~~ 494 (500)
+..|+++|.++-......... +.....++.|+.+|.. .++.++..|+++|+++ |..+...
T Consensus 626 kk~Aa~iLsnL~a~~~d~~~a--------------vv~agaIpPLV~LLss--~~~~v~keAA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 626 QEKAASVLADIFSSRQDLCES--------------LATDEIINPCIKLLTN--NTEAVATQSARALAALSRSIKENRKV 688 (2102)
T ss_pred HHHHHHHHHHHhcCChHHHHH--------------HHHcCCHHHHHHHHhc--CChHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999996533211000 0124789999999964 4556999999999988 3444433
No 9
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.85 E-value=7.2e-19 Score=169.85 Aligned_cols=243 Identities=16% Similarity=0.080 Sum_probs=206.4
Q ss_pred ChHhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhcc
Q psy10052 3 PEEKILLIGQVLK-DSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDK 81 (500)
Q Consensus 3 ~~~~~~~L~~~L~-~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~ 81 (500)
.+..++.|+..|. +++.+ ++..+...+.....+..+..|++.|.|+++.||..++.+|+.++.+.+.+.|...|+++
T Consensus 52 G~~a~~~L~~aL~~d~~~e--v~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~ 129 (410)
T TIGR02270 52 GKAATELLVSALAEADEPG--RVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAAS 129 (410)
T ss_pred hHhHHHHHHHHHhhCCChh--HHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Confidence 3567888899994 56665 88888888887766666899999999999999999999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHH
Q psy10052 82 SQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDIN 161 (500)
Q Consensus 82 ~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (500)
++.||..++.+++..+. +..+.+..+++|+++.||..|+.+|+.++. ....+
T Consensus 130 --~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-------------------------~~a~~ 181 (410)
T TIGR02270 130 --EPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPR-------------------------RLSES 181 (410)
T ss_pred --ChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------------------------ccchH
Confidence 89999999999998774 467889999999999999999999999886 44678
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHH
Q psy10052 162 KLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVR 241 (500)
Q Consensus 162 ~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr 241 (500)
.|...+.| .++.+|..|+.+++.+|++.+...+..+...+...++..+...++..+.+.+++.|..+++++ .+|
T Consensus 182 ~L~~al~d--~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~----~vr 255 (410)
T TIGR02270 182 TLRLYLRD--SDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA----ATR 255 (410)
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh----hhH
Confidence 88888854 566799999999999999889988888667777677777777777778889999999999862 389
Q ss_pred HHHHHHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhcc
Q psy10052 242 HECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCD 283 (500)
Q Consensus 242 ~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~ 283 (500)
..++.+||.++++.+++.|.+.+.++. ++..|..++..|-
T Consensus 256 ~~a~~AlG~lg~p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 256 REALRAVGLVGDVEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHHcCCcchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 999999999999999999999998875 8888888887663
No 10
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.85 E-value=1.2e-18 Score=168.45 Aligned_cols=252 Identities=21% Similarity=0.145 Sum_probs=157.9
Q ss_pred HHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhh
Q psy10052 59 AYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ 138 (500)
Q Consensus 59 ~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~ 138 (500)
+.+|...| +.+++.|+..|.+.. ++.++..++.++....++..+..|+..+.|+++.||..++.+|+.++.
T Consensus 45 LdgL~~~G-~~a~~~L~~aL~~d~-~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 45 VDGLVLAG-KAATELLVSALAEAD-EPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHhh-HhHHHHHHHHHhhCC-ChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 44444443 334444444442211 344444444444444433334444444444444455555555544443
Q ss_pred ccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhcc
Q psy10052 139 KDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQM 218 (500)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~ 218 (500)
+...+.|+..|++ .++++|..++.+++..+. +..+.+..+|+|+++.||..++.+||.+
T Consensus 116 ------------------~~a~~~L~~~L~~--~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 116 ------------------RQAEPWLEPLLAA--SEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred ------------------hHHHHHHHHHhcC--CChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 2234444444422 233344444444444332 3456677777788889999999999999
Q ss_pred CCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhc
Q psy10052 219 QNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCK 298 (500)
Q Consensus 219 ~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~ 298 (500)
+....++.|...+.+ .++.||..|+.+++.+|.+.+.+.+..+...+....+...
T Consensus 175 ~~~~a~~~L~~al~d--~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l----------------------- 229 (410)
T TIGR02270 175 PRRLSESTLRLYLRD--SDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRL----------------------- 229 (410)
T ss_pred ccccchHHHHHHHcC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHH-----------------------
Confidence 988888988888877 5688999999999999988888888776555544333322
Q ss_pred cCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHh
Q psy10052 299 FKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVL 378 (500)
Q Consensus 299 ~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l 378 (500)
...++..+++.+++.|..++.+++ +|..++.++|.++++.+++.|+..+
T Consensus 230 -----------------------------~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 230 -----------------------------LVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred -----------------------------HHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCcchHHHHHHHh
Confidence 222333355677888888887754 8888888999999888899998888
Q ss_pred hcCCCCHHHHHHHHHHHhhcCC
Q psy10052 379 EDKSQEPMVRHEAAEALGAIGD 400 (500)
Q Consensus 379 ~~~~~~~~vR~~a~~aL~~~~~ 400 (500)
.+. .+|..|.+++.+|-.
T Consensus 279 ~d~----~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 279 REP----PWARLAGEAFSLITG 296 (410)
T ss_pred cCc----HHHHHHHHHHHHhhC
Confidence 763 388888888888743
No 11
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.84 E-value=2.1e-18 Score=166.92 Aligned_cols=287 Identities=30% Similarity=0.406 Sum_probs=201.1
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhc-CCCH
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ-DPVK 116 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~ 116 (500)
..++.+.+.+.++++.+|..+.+.++.++...+++.|..++.+. ++.||..|+.+||.++.+..++.|+++++ |++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~--~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~ 120 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDE--DPRVRDAAADALGELGDPEAVPPLVELLENDENE 120 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHHHHHHhcCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcH
Confidence 47889999999999999999999999999999999999999999 78999999999999999999999999998 7999
Q ss_pred HHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHH
Q psy10052 117 EVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLAL 196 (500)
Q Consensus 117 ~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l 196 (500)
.||..|+.+|+.+++ +..+..+++.+.+.... . +...+
T Consensus 121 ~vR~~aa~aL~~~~~-------------------------~~a~~~l~~~l~~~~~~--~---a~~~~------------ 158 (335)
T COG1413 121 GVRAAAARALGKLGD-------------------------ERALDPLLEALQDEDSG--S---AAAAL------------ 158 (335)
T ss_pred hHHHHHHHHHHhcCc-------------------------hhhhHHHHHHhccchhh--h---hhhhc------------
Confidence 999999999999986 44588888888665422 1 11111
Q ss_pred HhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc--hHHHHHHHhhcCCcHHHHHH
Q psy10052 197 TEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATP--ECYDVLRKYLSDEKVVVRQS 274 (500)
Q Consensus 197 ~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~--~~~~~L~~~l~~~~~~vr~~ 274 (500)
......+|..++.+++.++++..++.+...+.+. +..||..|+.+|+.++.. ...+.+...+.++++.+|..
T Consensus 159 ----~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~--~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 159 ----DAALLDVRAAAAEALGELGDPEAIPLLIELLEDE--DADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKA 232 (335)
T ss_pred ----cchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCc--hHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHH
Confidence 1122267777777777777777777777777763 456777777777777776 56677777777777777777
Q ss_pred HHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHH
Q psy10052 275 CEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALL 354 (500)
Q Consensus 275 a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~v 354 (500)
++.+++.++. ......+...+.+.++.+
T Consensus 233 ~~~~l~~~~~----------------------------------------------------~~~~~~l~~~l~~~~~~~ 260 (335)
T COG1413 233 ALLALGEIGD----------------------------------------------------EEAVDALAKALEDEDVIL 260 (335)
T ss_pred HHHHhcccCc----------------------------------------------------chhHHHHHHHHhccchHH
Confidence 7666654332 233444444444555555
Q ss_pred HHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHHHHHHHhhcCCCHhHHHHHHHHHHH
Q psy10052 355 KHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKR 428 (500)
Q Consensus 355 r~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 428 (500)
+......++.+........+...+.+. .+.+|..+..+++.++.......+.....+.+..++..+...+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 261 ALLAAAALGALDLAEAALPLLLLLIDE--ANAVRLEAALALGQIGQEKAVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred HHHHHHHhcccCchhhHHHHHHHhhcc--hhhHHHHHHHHHHhhcccchHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 555555554444444444444444443 455666666666665555555555555555555555555554443
No 12
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.83 E-value=8.8e-18 Score=162.62 Aligned_cols=267 Identities=29% Similarity=0.320 Sum_probs=226.2
Q ss_pred CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCC
Q psy10052 68 SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGS 147 (500)
Q Consensus 68 ~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~ 147 (500)
...++.+.+.+.++ ++.+|..++..++.++...+++.|..++.|+++.||..|+.+|+.++.
T Consensus 42 ~~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------------- 103 (335)
T COG1413 42 PEAADELLKLLEDE--DLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGD---------------- 103 (335)
T ss_pred hhhHHHHHHHHcCC--CHHHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------------
Confidence 35778899999998 789999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHH
Q psy10052 148 VDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPAL 227 (500)
Q Consensus 148 ~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L 227 (500)
+..++.+++.+.+ +.+.++|..+..+|+.+++..++..++..++++...+ ++...
T Consensus 104 ---------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~---a~~~~------------ 158 (335)
T COG1413 104 ---------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDERALDPLLEALQDEDSGS---AAAAL------------ 158 (335)
T ss_pred ---------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhh---hhhhc------------
Confidence 4578889998864 4567789999999999999888888998888876555 11111
Q ss_pred HHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHH
Q psy10052 228 TSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKI 307 (500)
Q Consensus 228 ~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (500)
.. ....+|..++.+|+.++++...+.+..++.+++..||..++.+|+.+....
T Consensus 159 ----~~--~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------------------- 211 (335)
T COG1413 159 ----DA--ALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------------------- 211 (335)
T ss_pred ----cc--hHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------------------
Confidence 11 112589999999999999999999999999999999999999888443220
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHH
Q psy10052 308 LLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMV 387 (500)
Q Consensus 308 ~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~v 387 (500)
....+.+...+.++++.+|..++.+|+.++...+...+...+.+. ++.+
T Consensus 212 -----------------------------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l~~~--~~~~ 260 (335)
T COG1413 212 -----------------------------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDE--DVIL 260 (335)
T ss_pred -----------------------------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHHHHHhcc--chHH
Confidence 134567788899999999999999999999999999999999887 7999
Q ss_pred HHHHHHHHhhcCCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhc
Q psy10052 388 RHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEE 435 (500)
Q Consensus 388 R~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~ 435 (500)
+..+..+++..........+...+.|.+..++..+..++++++.....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (335)
T COG1413 261 ALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAV 308 (335)
T ss_pred HHHHHHHhcccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchH
Confidence 999999999887888888889999999999999999999998866543
No 13
>KOG0166|consensus
Probab=99.78 E-value=3.6e-17 Score=157.70 Aligned_cols=249 Identities=20% Similarity=0.233 Sum_probs=203.1
Q ss_pred CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHh
Q psy10052 222 SSIPALTSALEDQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL 290 (500)
Q Consensus 222 ~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~ 290 (500)
+.+|.+++++... .++.++..|+|+|.+|... +++|.|..++.+++..|+..|++|||.+..+.+...
T Consensus 109 G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred CcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 6799999999743 4689999999999988753 579999999999999999999999999988877766
Q ss_pred HHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHH
Q psy10052 291 QYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLKHELA 359 (500)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~ 359 (500)
.+.-..+ .+..|..++...++ +...+.+.++|.++.. ...+|.|..++.+.|..|...++
T Consensus 188 d~vl~~g--------~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~ 258 (514)
T KOG0166|consen 188 DYVLSCG--------ALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDAC 258 (514)
T ss_pred HHHHhhc--------chHHHHHHhccccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6654443 23466666666665 4567788888887643 24678888999999999999999
Q ss_pred HHHhccCCC-----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--C---------ccHHHHHHHhhc-CCCH
Q psy10052 360 YCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAEALGAIG--D---------KSSISILEKYAQ-DPVK 416 (500)
Q Consensus 360 ~aL~~l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~---------~~~~~~L~~~l~-d~~~ 416 (500)
|++..+.+. ..++.|+++|.+. ++.++..|++++|++. + ...++.|..++. .+..
T Consensus 259 WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~ 336 (514)
T KOG0166|consen 259 WALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKE 336 (514)
T ss_pred HHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcch
Confidence 999998753 3789999999987 6899999999999973 2 357889999886 6777
Q ss_pred hHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc---CChhhH
Q psy10052 417 EVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI---NSVEST 493 (500)
Q Consensus 417 ~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~---g~~~~~ 493 (500)
.+|.+|+|.+++|..++....+.. .+...+|.|+..|. +.++..|.+|+||++++ |+++.+
T Consensus 337 ~ikkEAcW~iSNItAG~~~qiqaV--------------ida~l~p~Li~~l~--~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 337 SIKKEACWTISNITAGNQEQIQAV--------------IDANLIPVLINLLQ--TAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHH--------------HHcccHHHHHHHHh--ccchHHHHHHHHHHHhhcccCCHHHH
Confidence 899999999999988665443322 23478999999994 55678999999999999 899999
Q ss_pred HHhhc
Q psy10052 494 LALTE 498 (500)
Q Consensus 494 ~~l~~ 498 (500)
..|++
T Consensus 401 ~yLv~ 405 (514)
T KOG0166|consen 401 KYLVE 405 (514)
T ss_pred HHHHH
Confidence 99875
No 14
>KOG2171|consensus
Probab=99.73 E-value=1.8e-14 Score=148.41 Aligned_cols=443 Identities=18% Similarity=0.180 Sum_probs=286.5
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCcchHHHHHHHcc-CCCHHHHHHHHHHHHccCC-----------Ccc
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNI-GGKTAIQCISEAFA-DESALLKHELAYCLGQMKD-----------SDA 70 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~-~~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~-----------~~~ 70 (500)
.....+|+..|.+||.. +|..|-+.+.+. +.+..++.|...+. .+||.+|.-|+-.+.++-. ...
T Consensus 3 ~~~l~qLl~~l~spDn~--vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNE--VRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hhHHHHHHHHhcCCCch--HHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 45678899999999987 999999999965 45567778888886 8899999999888876521 123
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcC-------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccC
Q psy10052 71 NDILRQVLEDKSQEPMVRHEAAEALGAIG-------DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGN 143 (500)
Q Consensus 71 ~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~ 143 (500)
...|+..+..+. .+.||..-++..+.+. +++.++.|.++.+++++..|+.|...|..+........
T Consensus 81 ks~lL~~~~~E~-~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~------ 153 (1075)
T KOG2171|consen 81 KSSLLEIIQSET-EPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL------ 153 (1075)
T ss_pred HHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc------
Confidence 345555665554 6889999999988764 57788889999999999999999999998765322111
Q ss_pred cCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC-----Ch-------hhHHHHHh----hccCCCHhH
Q psy10052 144 IYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN-----SV-------ESTLALTE----GLSHGSSLY 207 (500)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~-----~~-------~~i~~l~~----~L~~~~~~v 207 (500)
.+-+ .....-+.+.+.|++.. +|.+|+++++.+. +. ..+|.++. .+.+.+...
T Consensus 154 -------~~~~--~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~ 222 (1075)
T KOG2171|consen 154 -------QPHL--DDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDA 222 (1075)
T ss_pred -------chhH--HHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHH
Confidence 0000 12345555666665443 9999998887642 11 23333333 334455555
Q ss_pred HHHHHHHHhccCC--C--------CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-------------hHHHHHHHhh
Q psy10052 208 RHEIAFVLGQMQN--P--------SSIPALTSALEDQTQNEMVRHECAEALGAIATP-------------ECYDVLRKYL 264 (500)
Q Consensus 208 r~~a~~aL~~~~~--~--------~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-------------~~~~~L~~~l 264 (500)
-..+..+|..+-. + .++....+...+.+-+..+|..|++.|..+... ..++.+...+
T Consensus 223 a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 5666666655431 1 223333445556667788999999888644321 1233333333
Q ss_pred cCCcHH----------------HHHHHHHHhhhccccchhHhHHHHhhhccCCC--ChHHHHHHHHHhhcCCCCHHHHHH
Q psy10052 265 SDEKVV----------------VRQSCEIALDMCDYENSVELQYADTLCKFKMI--PEEKILLIGQVLKDSSKPLKERFR 326 (500)
Q Consensus 265 ~~~~~~----------------vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~l~~~~~~~~~r~~ 326 (500)
.+.... --..+.+++.++.. .+++. -....+.+..++.+++ |..|.+
T Consensus 303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~-------------~L~g~~v~p~~~~~l~~~l~S~~--w~~R~A 367 (1075)
T KOG2171|consen 303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL-------------HLGGKQVLPPLFEALEAMLQSTE--WKERHA 367 (1075)
T ss_pred CCcccchhhccccccccccccCcHHHHHHHHHHHHh-------------cCChhhehHHHHHHHHHHhcCCC--HHHHHH
Confidence 221100 11112222221111 11111 1223455666666665 789999
Q ss_pred HHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----------ccHHHHHHHhhcCCCCH
Q psy10052 327 ALFTLKNIGG----------KTAIQCISEAFADKSALLKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEP 385 (500)
Q Consensus 327 a~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~~~~~ 385 (500)
++.+++.++. ++.++.++..|+|+++.||.+|+.++|++... ...+.|+..+.+. .++
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~-~~~ 446 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST-QNV 446 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc-Cch
Confidence 9999997754 46777888999999999999999999999753 2455677777666 488
Q ss_pred HHHHHHHHHHhhcCCc-----------cHHH-HHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCC
Q psy10052 386 MVRHEAAEALGAIGDK-----------SSIS-ILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPP 453 (500)
Q Consensus 386 ~vR~~a~~aL~~~~~~-----------~~~~-~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 453 (500)
.|..+|+.||-++... ..+. .|..+++...+.|+..++.+|+........... |
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~-----------p--- 512 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI-----------P--- 512 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH-----------h---
Confidence 9999999999866321 2222 233344678899999999999998765433221 1
Q ss_pred CCchhhHHHHHHHHhcCC--ccHHHHHHHHHHhHhcC---ChhhHHHhh
Q psy10052 454 LDDVSDINKLKEILLNEN--EDLFMRYKAMFKLRDIN---SVESTLALT 497 (500)
Q Consensus 454 ~~~~~~~~~l~~~l~~~~--~~~~~r~~a~~al~~~g---~~~~~~~l~ 497 (500)
.-...++.|...|...+ ..-..|.+.++.++-|| ++|.-.+++
T Consensus 513 -Y~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 513 -YFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred -HHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 12378888988887654 23347888888887775 445544444
No 15
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.72 E-value=4.9e-16 Score=139.01 Aligned_cols=252 Identities=16% Similarity=0.195 Sum_probs=200.6
Q ss_pred CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchh
Q psy10052 220 NPSSIPALTSALEDQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSV 288 (500)
Q Consensus 220 ~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~ 288 (500)
+.+.+|.+++++... +....+..|+|+|.++.++ +++|.++.+|.+++..||..+++|||.+..+...
T Consensus 112 daGvVpRfvefm~~~-q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 112 DAGVVPRFVEFMDEI-QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred hccccHHHHHHHHhc-chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 346799999999543 4567899999999988753 5799999999999999999999999999888777
Q ss_pred HhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHH
Q psy10052 289 ELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLKHE 357 (500)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~ 357 (500)
...+.-.-+. ++.+..++.+....+..-+.+.+.|.+++. ..++|.|.+++...|+++-..
T Consensus 191 ~RD~vL~~ga--------leplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvD 262 (526)
T COG5064 191 CRDYVLQCGA--------LEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVD 262 (526)
T ss_pred HHHHHHhcCc--------hHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 7666543332 235555666555545666788888887653 257899999999999999999
Q ss_pred HHHHHhccCCCc-----------cHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--C---------ccHHHHHHHhhcCCC
Q psy10052 358 LAYCLGQMKDSD-----------ANDILRQVLEDKSQEPMVRHEAAEALGAIG--D---------KSSISILEKYAQDPV 415 (500)
Q Consensus 358 a~~aL~~l~~~~-----------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~ 415 (500)
|+|++..+.+.. .-..|+++|.++ +..+...|+++.|++- + -.+++.+..+++.+.
T Consensus 263 A~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k 340 (526)
T COG5064 263 ACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK 340 (526)
T ss_pred HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh
Confidence 999999997642 457899999887 7889999999999983 2 257788899999988
Q ss_pred HhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc-----CCh
Q psy10052 416 KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI-----NSV 490 (500)
Q Consensus 416 ~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~-----g~~ 490 (500)
..+|..|||.+++|...+.+..+.. -+...+|.|+.+| +..+.+.|.+|.||+.+. +.|
T Consensus 341 e~irKEaCWTiSNITAGnteqiqav--------------id~nliPpLi~ll--s~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 341 ENIRKEACWTISNITAGNTEQIQAV--------------IDANLIPPLIHLL--SSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred hhhhhhhheeecccccCCHHHHHHH--------------HhcccchHHHHHH--HHHHHHHHHHHHHHHHhhhccccCCc
Confidence 8999999999999988776544422 2346789999988 577889999999999987 467
Q ss_pred hhHHHhhc
Q psy10052 491 ESTLALTE 498 (500)
Q Consensus 491 ~~~~~l~~ 498 (500)
..|..|++
T Consensus 405 D~iryLv~ 412 (526)
T COG5064 405 DIIRYLVS 412 (526)
T ss_pred hHHHHHHH
Confidence 77777754
No 16
>KOG0166|consensus
Probab=99.72 E-value=7.3e-15 Score=141.87 Aligned_cols=314 Identities=18% Similarity=0.177 Sum_probs=210.9
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHccC----C--------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-------
Q psy10052 40 IQCISEAFADESALLKHELAYCLGQMK----D--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------- 100 (500)
Q Consensus 40 ~~~L~~~l~~~~~~vR~~a~~~L~~~~----~--------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------- 100 (500)
.+.++..+.++++..+..+...+..+- + ...++.++++|...+ ++.++..|+++|..|..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhcc
Confidence 455666667777777777777766541 1 357899999997553 69999999999999863
Q ss_pred ----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHH
Q psy10052 101 ----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFM 176 (500)
Q Consensus 101 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~ 176 (500)
.+++|.|+.++.+++..|+..|+|||+++..+...-...+. ...++++|+..+..++... .
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl--------------~~g~l~pLl~~l~~~~~~~-~ 211 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL--------------SCGALDPLLRLLNKSDKLS-M 211 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH--------------hhcchHHHHHHhccccchH-H
Confidence 36789999999999999999999999998754321100000 0235677777775544322 3
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc--
Q psy10052 177 RYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATP-- 254 (500)
Q Consensus 177 r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-- 254 (500)
...+.++|.++... ++|.|.+.... .++|.|..++.+ .|++|..-|+||+..+.+.
T Consensus 212 lRn~tW~LsNlcrg----------k~P~P~~~~v~----------~iLp~L~~ll~~--~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 212 LRNATWTLSNLCRG----------KNPSPPFDVVA----------PILPALLRLLHS--TDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred HHHHHHHHHHHHcC----------CCCCCcHHHHH----------HHHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCh
Confidence 34455555544322 12333222111 346777777776 4577888888888766532
Q ss_pred ---------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHH
Q psy10052 255 ---------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERF 325 (500)
Q Consensus 255 ---------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~ 325 (500)
+..+.|..+|.++++.++..|+.++|.|..+.....+..-
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi------------------------------- 318 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI------------------------------- 318 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH-------------------------------
Confidence 4688999999999999999999999988766544322111
Q ss_pred HHHHHHHhcCChhhHHHHHHHhc-CCCHHHHHHHHHHHhccCCC-----------ccHHHHHHHhhcCCCCHHHHHHHHH
Q psy10052 326 RALFTLKNIGGKTAIQCISEAFA-DKSALLKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAE 393 (500)
Q Consensus 326 ~a~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~ 393 (500)
+..+++.|..++. ++...+|.+|+|.++++... ..+|.|+.++... +.++|.+|++
T Consensus 319 ----------~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--ef~~rKEAaw 386 (514)
T KOG0166|consen 319 ----------NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--EFDIRKEAAW 386 (514)
T ss_pred ----------hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--chHHHHHHHH
Confidence 1234566666665 44445677777777776532 3577888888766 6788888888
Q ss_pred HHhhcCC---c---------cHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 394 ALGAIGD---K---------SSISILEKYAQDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 394 aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
|++++.. + ..++.|..++.-+|..+-..+..+|+.|.....
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 8877632 2 356777777877788888888889988866543
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.62 E-value=4.9e-13 Score=138.11 Aligned_cols=385 Identities=20% Similarity=0.157 Sum_probs=262.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHH----HHHHHccCCCHHHHHHHHHHHHccC----C--Cc-cHHHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQ----CISEAFADESALLKHELAYCLGQMK----D--SD-ANDIL 74 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vR~~a~~~L~~~~----~--~~-~~~~L 74 (500)
.++.+.+-|.|+++. +|..|++.|+.++.++..+ .+.+++.|++|.||..|+.++..+- + +. .++.+
T Consensus 80 ~~n~l~kdl~~~n~~--~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 80 IINSLQKDLNSPNPY--IRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHHCSSSHH--HHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHHhhcCCCHH--HHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 577888899999875 9999999999999765444 4667788999999999999988772 1 22 47888
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhc-CChh----hHHH----HHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcC
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAI-GDKS----SISI----LEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 145 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~-~~~~----~~~~----L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~ 145 (500)
.++|.|. |+.|+..|+.++..+ ..+. .++. |.+.+.+++|.++..++..|.++..........
T Consensus 158 ~~lL~d~--~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~------ 229 (526)
T PF01602_consen 158 KQLLSDK--DPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK------ 229 (526)
T ss_dssp HHHTTHS--SHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH------
T ss_pred hhhccCC--cchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH------
Confidence 9999888 899999999999988 4332 2333 444457999999999999998876432221100
Q ss_pred CCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh-----hhHHHHHhhccCCCHhHHHHHHHHHhccCC
Q psy10052 146 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV-----ESTLALTEGLSHGSSLYRHEIAFVLGQMQN 220 (500)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~-----~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~ 220 (500)
...++.+...+. +.+..+...++..+..+... .+++.+..++.++++.+|..++..+..+..
T Consensus 230 -----------~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 230 -----------NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp -----------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred -----------HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence 024666777775 34566888898888875543 357888899999999999999999987764
Q ss_pred CC-----cHHHHHHHhhccCCCHHHHHHHHHHHhhcCCch----HHHHHHHhhc-CCcHHHHHHHHHHhhhccccchhHh
Q psy10052 221 PS-----SIPALTSALEDQTQNEMVRHECAEALGAIATPE----CYDVLRKYLS-DEKVVVRQSCEIALDMCDYENSVEL 290 (500)
Q Consensus 221 ~~-----~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~-~~~~~vr~~a~~al~~l~~~~~~~~ 290 (500)
.. ........+.. +.+..+|..++..|..+.++. .++.|.+++. ..+..++..++.+++.+.......
T Consensus 297 ~~~~~v~~~~~~~~~l~~-~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~- 374 (526)
T PF01602_consen 297 SNPPAVFNQSLILFFLLY-DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD- 374 (526)
T ss_dssp HCHHHHGTHHHHHHHHHC-SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-
T ss_pred ccchhhhhhhhhhheecC-CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch-
Confidence 33 12222334441 257899999999999888754 5677777784 447889999999998765443221
Q ss_pred HHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHH----hcCC--hhhHHHHHHHhcC-CCHHHHHHHHHHHh
Q psy10052 291 QYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLK----NIGG--KTAIQCISEAFAD-KSALLKHELAYCLG 363 (500)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~----~~~~--~~~~~~L~~~l~~-~~~~vr~~a~~aL~ 363 (500)
..+.+..+.+++...... +....+..+. +... ...+..+.+.+.+ .++.++..++|.+|
T Consensus 375 ------------~~~~v~~l~~ll~~~~~~--~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilG 440 (526)
T PF01602_consen 375 ------------AEWYVDTLLKLLEISGDY--VSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILG 440 (526)
T ss_dssp ------------HHHHHHHHHHHHHCTGGG--CHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhhhhcccc--ccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhc
Confidence 123344555555543221 1112222121 1111 2356777777775 57889999999999
Q ss_pred ccCCC--c------cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------ccHHHHHHHhhc--CCCHhHHHHHHHH
Q psy10052 364 QMKDS--D------ANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQ--DPVKEVSETCYLA 425 (500)
Q Consensus 364 ~l~~~--~------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~--d~~~~vr~~A~~a 425 (500)
+++.. . ....+.+.+.+. +..+|..++.++.++.. +.....+..+.. +.+++||..|.+.
T Consensus 441 Ey~~~~~~~~~~~~~~~~l~~~~~~~--~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y 518 (526)
T PF01602_consen 441 EYGELIENTESAPDILRSLIENFIEE--SPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREY 518 (526)
T ss_dssp HHCHHHTTTTHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHH
T ss_pred ccCCcccccccHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 98742 2 233344444433 68899999999988631 144566666666 7899999999999
Q ss_pred HHHhhh
Q psy10052 426 LKRIQF 431 (500)
Q Consensus 426 L~~l~~ 431 (500)
+.-+..
T Consensus 519 ~~ll~~ 524 (526)
T PF01602_consen 519 LRLLNS 524 (526)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 887753
No 18
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.61 E-value=2.9e-13 Score=121.44 Aligned_cols=304 Identities=14% Similarity=0.143 Sum_probs=222.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCC---CcccHHHHHHHhcCCCcCHHHHHH
Q psy10052 103 SISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLD---DVSDINKLKEILLNENEDLFMRYK 179 (500)
Q Consensus 103 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~~l~d~~~~~~~r~~ 179 (500)
-+|.|.+.+.++|-..+..|..-+.++-+.. ..|++. ..+.++.+++++... +.......
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E----------------~~PPIq~VIdaGvVpRfvefm~~~-q~~mlqfE 134 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKE----------------TSPPIQPVIDAGVVPRFVEFMDEI-QRDMLQFE 134 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccc----------------cCCCchhHHhccccHHHHHHHHhc-chhHHHHH
Confidence 3577777777777777777776666654322 223322 145689999999543 34457889
Q ss_pred HHHHHHcCCCh-----------hhHHHHHhhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhccCCC
Q psy10052 180 AMFKLRDINSV-----------ESTLALTEGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALEDQTQN 237 (500)
Q Consensus 180 A~~~L~~~~~~-----------~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~~~ 237 (500)
|.++|.++.+. .+++.++++|.+++..||.+++++||.+.. ..++.+++.++.....+
T Consensus 135 AaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ 214 (526)
T COG5064 135 AAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH 214 (526)
T ss_pred HHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch
Confidence 99999987642 689999999999999999999999999862 35678888888754344
Q ss_pred HHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHH
Q psy10052 238 EMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEK 306 (500)
Q Consensus 238 ~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~ 306 (500)
..+.+.+.|.|.++..+ .++|.|.+++...|+.+-.-|++|+..+........+..-..+ .
T Consensus 215 ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g--------~ 286 (526)
T COG5064 215 ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG--------I 286 (526)
T ss_pred HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC--------C
Confidence 56778899999877542 4799999999999999999999999988776554433322222 1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCC-------
Q psy10052 307 ILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLKHELAYCLGQMKDS------- 368 (500)
Q Consensus 307 ~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~------- 368 (500)
...|.++|.+++.. +...|++..+++.+ -.+++.+..+|+++...+|..+||.+.++...
T Consensus 287 ~~RLvElLs~~sa~--iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqa 364 (526)
T COG5064 287 PGRLVELLSHESAK--IQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQA 364 (526)
T ss_pred cHHHHHHhcCcccc--ccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHH
Confidence 23577888887654 57788888887743 13677888889999889999999999998643
Q ss_pred ----ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC-----Cc---------cHHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 369 ----DANDILRQVLEDKSQEPMVRHEAAEALGAIG-----DK---------SSISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 369 ----~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~-----~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
..+|+|+.++... +..+|.+|++|+.+.. .| .++..|..+++-.+-.+-+.+..++..+-
T Consensus 365 vid~nliPpLi~lls~a--e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 365 VIDANLIPPLIHLLSSA--EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHhcccchHHHHHHHHH--HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence 3689999999876 7999999999998753 23 45677777886544455556677777765
Q ss_pred hhhhc
Q psy10052 431 FVTEE 435 (500)
Q Consensus 431 ~~~~~ 435 (500)
.....
T Consensus 443 k~Ge~ 447 (526)
T COG5064 443 KVGEQ 447 (526)
T ss_pred hhhhH
Confidence 54433
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.59 E-value=1.8e-12 Score=133.90 Aligned_cols=419 Identities=16% Similarity=0.132 Sum_probs=280.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCC--cc----hHHHHHHHccCCCHHHHHHHHHHHHccCCCcc----HHHHHHH
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGG--KT----AIQCISEAFADESALLKHELAYCLGQMKDSDA----NDILRQV 77 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~ 77 (500)
...++++.+.+.. .|..+-..+..+.. ++ .+..+.+-|.++++.+|..|++.|+.+..++. .+.+.++
T Consensus 45 ~~vi~l~~s~~~~--~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 45 MEVIKLISSKDLE--LKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKL 122 (526)
T ss_dssp HHHHCTCSSSSHH--HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHH
Confidence 3445556666654 67666666666553 22 56677778889999999999999999987654 4556778
Q ss_pred hhccCCCHHHHHHHHHHHHhcCC------hh-hHHHHHHHhcCCCHHHHHHHHHHHHHh-chhccc-hhhccccCcCCCC
Q psy10052 78 LEDKSQEPMVRHEAAEALGAIGD------KS-SISILEKYAQDPVKEVSETCYLALKRI-QFVTEE-DKQKDTGNIYGSV 148 (500)
Q Consensus 78 L~~~~~d~~vr~~a~~aL~~~~~------~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~~~~-~~~~~~~~~~~~~ 148 (500)
+.++ +|.||+.|+.++.++-. +. .++.+.+++.|+++.|+.+|..++..+ ..+... ...
T Consensus 123 l~~~--~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~---------- 190 (526)
T PF01602_consen 123 LSDP--SPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI---------- 190 (526)
T ss_dssp HHSS--SHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH----------
T ss_pred hcCC--chHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH----------
Confidence 8888 79999999999988631 13 478888999999999999999999988 221110 000
Q ss_pred CCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC--------hhhHHHHHhhccCCCHhHHHHHHHHHhccCC
Q psy10052 149 DPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS--------VESTLALTEGLSHGSSLYRHEIAFVLGQMQN 220 (500)
Q Consensus 149 ~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~--------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~ 220 (500)
...+..|.+.+ ...++|.+...+..+..+.. ...++.+...+.+.++.|..+++..+..+..
T Consensus 191 --------~~~~~~L~~~l--~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~ 260 (526)
T PF01602_consen 191 --------PKLIRILCQLL--SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP 260 (526)
T ss_dssp --------HHHHHHHHHHH--TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred --------HHHHHHhhhcc--cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc
Confidence 12234444444 45678899999999988765 2356777777788888999999999887765
Q ss_pred CC-----cHHHHHHHhhccCCCHHHHHHHHHHHhhcCCch-----HHHHHHHhhc-CCcHHHHHHHHHHhhhccccchhH
Q psy10052 221 PS-----SIPALTSALEDQTQNEMVRHECAEALGAIATPE-----CYDVLRKYLS-DEKVVVRQSCEIALDMCDYENSVE 289 (500)
Q Consensus 221 ~~-----~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~-~~~~~vr~~a~~al~~l~~~~~~~ 289 (500)
.. +++.|..++.+ .++.+|..++..|..+.... ........+. +++..+|..++..+..+....+-.
T Consensus 261 ~~~~~~~~~~~L~~lL~s--~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~ 338 (526)
T PF01602_consen 261 SPELLQKAINPLIKLLSS--SDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVK 338 (526)
T ss_dssp SHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHH
T ss_pred chHHHHhhHHHHHHHhhc--ccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchh
Confidence 43 47778888875 46889999999998776543 1222223444 888999999988887665443221
Q ss_pred hHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCCHHHHHHHHHHHh
Q psy10052 290 LQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG------KTAIQCISEAFADKSALLKHELAYCLG 363 (500)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~ 363 (500)
.-+..|.+.+.+.. +...+..++..++.+.. ...++.+++++...+..+...++..+.
T Consensus 339 ---------------~Il~eL~~~l~~~~-d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~ 402 (526)
T PF01602_consen 339 ---------------EILDELLKYLSELS-DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIR 402 (526)
T ss_dssp ---------------HHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHH
T ss_pred ---------------hHHHHHHHHHHhcc-chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHH
Confidence 12345555553321 12367777777765432 456788888888776666666666655
Q ss_pred ccC--CC----ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc--------cHHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 364 QMK--DS----DANDILRQVLEDKSQEPMVRHEAAEALGAIGDK--------SSISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 364 ~l~--~~----~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
.+- .+ .++..|.+.+.+. .++.++..+++.+|..+.. +.+..+.+...+.++.||.....++.++
T Consensus 403 ~ll~~~~~~~~~~l~~L~~~l~~~-~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 403 DLLSNNPELREKILKKLIELLEDI-SSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp HHHHHSTTTHHHHHHHHHHHHTSS-SSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHhhcChhhhHHHHHHHHHHHHHh-hHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 541 22 2678888888774 3889999999999998642 2344445555677888999999999999
Q ss_pred hhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHh
Q psy10052 430 QFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRD 486 (500)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~ 486 (500)
....+.... .+...+.+.+....++.+..+|.+|.+-+.=
T Consensus 482 ~~~~~~~~~-----------------~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 482 FKRNPENEV-----------------QNEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp HHHSCSTTH-----------------HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred HhhCCchhh-----------------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 765321000 1244455555554124466799999886653
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=99.55 E-value=5.9e-11 Score=123.07 Aligned_cols=384 Identities=16% Similarity=0.126 Sum_probs=223.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchH----HHHHHHccCCCHHHHHHHHHHHHccC--C------CccHHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAI----QCISEAFADESALLKHELAYCLGQMK--D------SDANDI 73 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vR~~a~~~L~~~~--~------~~~~~~ 73 (500)
+++.|.+-|.|+|+. +|..|++.|+.+..+..+ ..+.+++.|++|+||..|+.++.++- + ...++.
T Consensus 106 aINtl~KDl~d~Np~--IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPV--VRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 456666777777664 777777777777665433 33455666777777777777776652 1 133566
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCCh---------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCc
Q psy10052 74 LRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNI 144 (500)
Q Consensus 74 L~~~L~~~~~d~~vr~~a~~aL~~~~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~ 144 (500)
|.++|.|. |+.|...|+.+|-.+... ..+..|+..+.+-++..+...+..|.+.........
T Consensus 184 L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~------- 254 (746)
T PTZ00429 184 LVELLNDN--NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA------- 254 (746)
T ss_pred HHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-------
Confidence 67777666 677777777777666421 122334444455566666666666655332110000
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC---hhhHH--------HHHhhccCCCHhHHHHHHH
Q psy10052 145 YGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS---VESTL--------ALTEGLSHGSSLYRHEIAF 213 (500)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~---~~~i~--------~l~~~L~~~~~~vr~~a~~ 213 (500)
...+..+...|.+ .+..|...|+..+..+.. ++.+. .++.+ .+.++.++..+++
T Consensus 255 ------------~~il~~l~~~Lq~--~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr 319 (746)
T PTZ00429 255 ------------ETLLTRVLPRMSH--QNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCK 319 (746)
T ss_pred ------------HHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHH
Confidence 2345666666744 456788888888776553 23222 23333 4567788888887
Q ss_pred HHhccC--CCCcHHHHHHHh-hccCCCHHHHHHHHHHHhhcCCch----HHHHHHHhhcCCcHHHHHHHHHHhhhccccc
Q psy10052 214 VLGQMQ--NPSSIPALTSAL-EDQTQNEMVRHECAEALGAIATPE----CYDVLRKYLSDEKVVVRQSCEIALDMCDYEN 286 (500)
Q Consensus 214 aL~~~~--~~~~i~~L~~~l-~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~ 286 (500)
.+..+- .+..+..-.+.+ .-.++...++...++.|..+.++. .+..|.++..+.+..++..++.++|.+....
T Consensus 320 ~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 320 NIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred HHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 664432 233222222222 111223568999999998888764 4566777788889999999999999775433
Q ss_pred hhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHh---cCCCHHHHHHHH
Q psy10052 287 SVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNI----GGKTAIQCISEAF---ADKSALLKHELA 359 (500)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~----~~~~~~~~L~~~l---~~~~~~vr~~a~ 359 (500)
+.. ....+..|.+++.+... . + ..++..+..+ .....+..|+..+ .=.++..|.+.+
T Consensus 400 ~~~-------------a~~cV~~Ll~ll~~~~~-~-v-~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaii 463 (746)
T PTZ00429 400 DSV-------------APDCANLLLQIVDRRPE-L-L-PQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLL 463 (746)
T ss_pred hHH-------------HHHHHHHHHHHhcCCch-h-H-HHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHH
Confidence 221 12334455555554322 1 1 1223333222 1122344444433 124788999999
Q ss_pred HHHhccCCC--ccHHHHHHHhhc-CCCCHHHHHHHHHHHhhcC--Cc-c----HHHHHHHhhc-CCCHhHHHHHHHHHHH
Q psy10052 360 YCLGQMKDS--DANDILRQVLED-KSQEPMVRHEAAEALGAIG--DK-S----SISILEKYAQ-DPVKEVSETCYLALKR 428 (500)
Q Consensus 360 ~aL~~l~~~--~~~~~L~~~l~~-~~~~~~vR~~a~~aL~~~~--~~-~----~~~~L~~~l~-d~~~~vr~~A~~aL~~ 428 (500)
|.+|++++. .+...|..++++ ..+++.||...+.+..++- .+ + ....|..+.+ +.+++||..|....+-
T Consensus 464 WILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 464 WMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 999998753 233333344432 1247899999999888652 22 2 2233334434 5889999999987776
Q ss_pred hhh
Q psy10052 429 IQF 431 (500)
Q Consensus 429 l~~ 431 (500)
+..
T Consensus 544 Ls~ 546 (746)
T PTZ00429 544 LSK 546 (746)
T ss_pred HcC
Confidence 643
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=99.53 E-value=2.7e-10 Score=118.20 Aligned_cols=431 Identities=13% Similarity=0.087 Sum_probs=251.5
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCC--cchHHHHHHHccCCCHHHHHHHHHHHHccCC--Cc----cHH
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKN---IGG--KTAIQCISEAFADESALLKHELAYCLGQMKD--SD----AND 72 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~---~~~--~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--~~----~~~ 72 (500)
+..+.+|.+.|.+.+.. .|..|++.+-. .|. ....+.+++.+.++|..+|+-.-..+..++. ++ ++.
T Consensus 31 kge~~ELr~~L~s~~~~--~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaIN 108 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSY--RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVN 108 (746)
T ss_pred cchHHHHHHHHHCCCHH--HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHH
Confidence 34678899999888764 67777765443 342 3467777888889999998877666665543 22 467
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCChhhH----HHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCC
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIGDKSSI----SILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSV 148 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~ 148 (500)
.|.+-+.|+ +|.+|..|++.|+.+..+..+ +.+.+++.|++|.||..|+.++.++-......
T Consensus 109 tl~KDl~d~--Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel------------ 174 (746)
T PTZ00429 109 TFLQDTTNS--SPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL------------ 174 (746)
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc------------
Confidence 777777777 899999999999999987654 45677889999999999999999975321100
Q ss_pred CCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC---------hhhHHHHHhhccCCCHhHHHHHHHHHhccC
Q psy10052 149 DPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS---------VESTLALTEGLSHGSSLYRHEIAFVLGQMQ 219 (500)
Q Consensus 149 ~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~---------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~ 219 (500)
+.....++.|.+++.|. ++.+...|+.+|..+.. ...+..++..+.+-++..+..++..|....
T Consensus 175 -----v~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 175 -----FYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred -----ccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 00023578888888654 55688888888877642 234455566666667777888888887654
Q ss_pred CC------CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC---chHHH--------HHHHhhcCCcHHHHHHHHHHhhhc
Q psy10052 220 NP------SSIPALTSALEDQTQNEMVRHECAEALGAIAT---PECYD--------VLRKYLSDEKVVVRQSCEIALDMC 282 (500)
Q Consensus 220 ~~------~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~~~~~--------~L~~~l~~~~~~vr~~a~~al~~l 282 (500)
.. ..+..+...+++ .++.|...|+.++..+.. +..+. .+.. |.+.++.++..++..+..+
T Consensus 248 P~~~~e~~~il~~l~~~Lq~--~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~-L~ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 248 PSDKESAETLLTRVLPRMSH--QNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLT-LSRRDAETQYIVCKNIHAL 324 (746)
T ss_pred CCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHH-hhCCCccHHHHHHHHHHHH
Confidence 22 234445555655 468999999998876654 22222 2233 3455678888887777655
Q ss_pred cccchhHhHH-------------------HHhhhccCCC--ChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----
Q psy10052 283 DYENSVELQY-------------------ADTLCKFKMI--PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG----- 336 (500)
Q Consensus 283 ~~~~~~~~~~-------------------~~~l~~~~~~--~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~----- 336 (500)
.......+.. ...+-.+... ....+..|.+.+.+.+ ...+..++++++.+..
T Consensus 325 ~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D--~ef~r~aIrAIg~lA~k~~~~ 402 (746)
T PTZ00429 325 LVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVD--MVFVVEVVRAIASLAIKVDSV 402 (746)
T ss_pred HHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHhChHH
Confidence 4433321110 0001111100 0112233333333333 3456666666665532
Q ss_pred -hhhHHHHHHHhcCCCHHHHHHHHHHHhcc--CCCc--cHHHHHHHhh-cCCCCHHHHHHHHHHHhhcCCc--cHHHHHH
Q psy10052 337 -KTAIQCISEAFADKSALLKHELAYCLGQM--KDSD--ANDILRQVLE-DKSQEPMVRHEAAEALGAIGDK--SSISILE 408 (500)
Q Consensus 337 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~l--~~~~--~~~~L~~~l~-~~~~~~~vR~~a~~aL~~~~~~--~~~~~L~ 408 (500)
...+..|++++.+... +...++..+..+ ..+. .+..|...+. +.-.++..|.+.++.||..+.. ++-..|.
T Consensus 403 a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~ 481 (746)
T PTZ00429 403 APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQ 481 (746)
T ss_pred HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHH
Confidence 2334455555554332 222334443333 1122 2333433220 1113577777888888876532 2223333
Q ss_pred Hhh---cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHH
Q psy10052 409 KYA---QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMF 482 (500)
Q Consensus 409 ~~l---~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~ 482 (500)
.++ .+.++.||.....+..++-..... .....+..+.+.+...+.+..+|.+|.+
T Consensus 482 ~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-------------------~~~~~l~~vL~~~t~~~~d~DVRDRA~~ 539 (746)
T PTZ00429 482 RFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-------------------GMEPQLNRVLETVTTHSDDPDVRDRAFA 539 (746)
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhcCcH-------------------HHHHHHHHHHHHHHhcCCChhHHHHHHH
Confidence 343 356777887777777766432210 1123444555444333344468888885
No 22
>KOG2062|consensus
Probab=99.47 E-value=1.6e-10 Score=113.77 Aligned_cols=300 Identities=24% Similarity=0.323 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHcCCC---hhhHHHHHhhccC----CCHhHHHHHHHHHhccCC---CCcHHHHHHHhhccCCCHHHHHHH
Q psy10052 175 FMRYKAMFKLRDINS---VESTLALTEGLSH----GSSLYRHEIAFVLGQMQN---PSSIPALTSALEDQTQNEMVRHEC 244 (500)
Q Consensus 175 ~~r~~A~~~L~~~~~---~~~i~~l~~~L~~----~~~~vr~~a~~aL~~~~~---~~~i~~L~~~l~~~~~~~~vr~~a 244 (500)
|-...|...|+-++. .++...+...|-. .+..---.++.++|-++. .+....|.+.|.+.+ ++.||..+
T Consensus 356 WaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~-~e~v~hG~ 434 (929)
T KOG2062|consen 356 WAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAE-NEVVRHGA 434 (929)
T ss_pred HhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhcc-chhhhhhh
Confidence 456677777776653 3567777777754 233444578889888762 347888888888764 78899999
Q ss_pred HHHHhhcCC----chHHHHHHHhhcCCcHHHHHHHHHHhhhccccc--hh----HhHHHH------h-------hhcc-C
Q psy10052 245 AEALGAIAT----PECYDVLRKYLSDEKVVVRQSCEIALDMCDYEN--SV----ELQYAD------T-------LCKF-K 300 (500)
Q Consensus 245 ~~aL~~~~~----~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~--~~----~~~~~~------~-------l~~~-~ 300 (500)
+-.||-.+- .+.++.+.+.+...+...-++|..++|.+.-+. .. .+.|+. . +..+ -
T Consensus 435 cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~y 514 (929)
T KOG2062|consen 435 CLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVY 514 (929)
T ss_pred hhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHh
Confidence 988875543 356888888888777777788888888654332 21 112221 0 0000 0
Q ss_pred CCChHHHHHHHHHhhcCCCCHHHHHHHHHHHH----hcCChhhHHHHHHH-hcCCCHHHHHHHHHHHhcc--CCCccHHH
Q psy10052 301 MIPEEKILLIGQVLKDSSKPLKERFRALFTLK----NIGGKTAIQCISEA-FADKSALLKHELAYCLGQM--KDSDANDI 373 (500)
Q Consensus 301 ~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~----~~~~~~~~~~L~~~-l~~~~~~vr~~a~~aL~~l--~~~~~~~~ 373 (500)
...+..-+.+.+++.+.++ ..|+..+.+++ ..+...++..|+.. .+|.+.+||.+|+-+||.+ .+++..+.
T Consensus 515 grqe~Ad~lI~el~~dkdp--ilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s 592 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDKDP--ILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPS 592 (929)
T ss_pred hhhhhhHHHHHHHhcCCch--hhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchH
Confidence 1123344567777777765 36888877655 33456777766654 7899999999999999986 57788999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhc----CCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCC
Q psy10052 374 LRQVLEDKSQEPMVRHEAAEALGAI----GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVD 449 (500)
Q Consensus 374 L~~~l~~~~~~~~vR~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~ 449 (500)
.+.+|.+. .++.||..++.|||-. |..+++..|..+..|+...||+.|+.+++.|...+++.. +
T Consensus 593 ~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~-----------~ 660 (929)
T KOG2062|consen 593 TVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL-----------C 660 (929)
T ss_pred HHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc-----------C
Confidence 99999754 5899999999999854 678899999999999999999999999999976553211 1
Q ss_pred CCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc--CChhhH
Q psy10052 450 PTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI--NSVEST 493 (500)
Q Consensus 450 ~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~--g~~~~~ 493 (500)
| ........|.+...++|+|-.++..|+.|-|-+ |++.++
T Consensus 661 p----kv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvt 702 (929)
T KOG2062|consen 661 P----KVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVT 702 (929)
T ss_pred c----hHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEE
Confidence 1 234678889999999999999999999987765 666543
No 23
>KOG4224|consensus
Probab=99.45 E-value=1.4e-11 Score=111.84 Aligned_cols=227 Identities=16% Similarity=0.178 Sum_probs=153.9
Q ss_pred hhHHHHHhhccCCCHhHHHHHHHHHhccC------------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc----
Q psy10052 191 ESTLALTEGLSHGSSLYRHEIAFVLGQMQ------------NPSSIPALTSALEDQTQNEMVRHECAEALGAIATP---- 254 (500)
Q Consensus 191 ~~i~~l~~~L~~~~~~vr~~a~~aL~~~~------------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~---- 254 (500)
..++.|+.+++..++.||.....+++.++ .|..+|.|++++.++ ++.++..|..+|+.+...
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~--s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG--SDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC--ChHHHHHHHHHHhhhcccchhh
Confidence 35566666666666666666666665554 456899999999874 578999999999887753
Q ss_pred ------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHH
Q psy10052 255 ------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRAL 328 (500)
Q Consensus 255 ------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~ 328 (500)
+.+|.+.++++++......+.+.++..+....-+.. ...+...+..|..++.-.+.. .....|.
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~---------lI~dagfl~pLVrlL~~~dnE-eiqchAv 355 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV---------LIADAGFLRPLVRLLRAGDNE-EIQCHAV 355 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc---------ceecccchhHHHHHHhcCCch-hhhhhHH
Confidence 468999999999866666666666655543322211 011123344566666655443 2455566
Q ss_pred HHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHhccCC----------CccHHHHHHHhhcCCCCHHH
Q psy10052 329 FTLKNIGG-----------KTAIQCISEAFADKSALLKHELAYCLGQMKD----------SDANDILRQVLEDKSQEPMV 387 (500)
Q Consensus 329 ~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~----------~~~~~~L~~~l~~~~~~~~v 387 (500)
..|.++.. ..+++.++.++-|..-.+|...-.+++.+.- ...++.|+....+. +.+|
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~--s~Ev 433 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE--SEEV 433 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc--chhh
Confidence 55554432 4578999999998887777666555555432 34678888888776 6899
Q ss_pred HHHHHHHHhhcCCc----------------cHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 388 RHEAAEALGAIGDK----------------SSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 388 R~~a~~aL~~~~~~----------------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
|-.|+.||+++... .....|..++.+.+..+|..+.|.+.++..
T Consensus 434 ~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 434 RGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred cccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999998542 344566777777777888888888888764
No 24
>KOG2023|consensus
Probab=99.41 E-value=2.4e-10 Score=111.47 Aligned_cols=444 Identities=20% Similarity=0.173 Sum_probs=256.9
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCc---------------chHHHHHHHccCCCHHHHHHHHHHHHccC---
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGGK---------------TAIQCISEAFADESALLKHELAYCLGQMK--- 66 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~---------------~~~~~L~~~l~~~~~~vR~~a~~~L~~~~--- 66 (500)
.-.+.|.++|.+++.. ..--|..+|.++-.+ ..++.+++.+++++|.+|.+|+.++-++-
T Consensus 128 elLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYN--TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCccc--ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 4578899999998865 677778888776531 36788899999999999999999998762
Q ss_pred C-------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 67 D-------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 67 ~-------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
. ...++.|..+-.|+ +++||...+++|..+-. .+.++..+...+|.|..|...|.+-+-.+
T Consensus 206 ~qal~~~iD~Fle~lFalanD~--~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDE--DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 1 22345555555566 89999999999986532 24556666667999999988887766655
Q ss_pred chhccchhh------c----cccC-cCCCCCCC--------CCCC--CcccHHHHHHH----------hcCCC-------
Q psy10052 130 QFVTEEDKQ------K----DTGN-IYGSVDPT--------PPLD--DVSDINKLKEI----------LLNEN------- 171 (500)
Q Consensus 130 ~~~~~~~~~------~----~~~~-~~~~~~~~--------~~~~--~~~~~~~L~~~----------l~d~~------- 171 (500)
....-.... + +..+ .|.-.|.. .... .++.-|...+. =.|++
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 433221111 0 1111 01100000 0000 00011111110 00001
Q ss_pred ---cCHHHHH---HHHHHHHcCCChhhH----HHHHhhccCCCHhHHHHHHHHHhccC----------CCCcHHHHHHHh
Q psy10052 172 ---EDLFMRY---KAMFKLRDINSVEST----LALTEGLSHGSSLYRHEIAFVLGQMQ----------NPSSIPALTSAL 231 (500)
Q Consensus 172 ---~~~~~r~---~A~~~L~~~~~~~~i----~~l~~~L~~~~~~vr~~a~~aL~~~~----------~~~~i~~L~~~l 231 (500)
.++..|. +++..|.++-..+.+ +.|.+.|.++.+.+|...+-++|.+. -++.+|.|+.+|
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L 443 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLL 443 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHh
Confidence 1244565 345667776655544 45555666788999999999998765 256789999999
Q ss_pred hccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccC
Q psy10052 232 EDQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFK 300 (500)
Q Consensus 232 ~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~ 300 (500)
.|. .|-||.-.+|.|++++.- ..+..|.+.+-|.+..|+++|+.|+..+..+....
T Consensus 444 ~DK--kplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e----------- 510 (885)
T KOG2023|consen 444 DDK--KPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE----------- 510 (885)
T ss_pred ccC--ccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-----------
Confidence 884 588999999999988741 12334444556888999999999998665443321
Q ss_pred CCChHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHhcC-----ChhhHH----HHHH---HhcCCCHHHH-----
Q psy10052 301 MIPEEKILLIGQVLKD--------SSKPLKERFRALFTLKNIG-----GKTAIQ----CISE---AFADKSALLK----- 355 (500)
Q Consensus 301 ~~~~~~~~~l~~~l~~--------~~~~~~~r~~a~~~L~~~~-----~~~~~~----~L~~---~l~~~~~~vr----- 355 (500)
-+|.+..+|.. ...++..-|-|+.+|+... .+..++ .|++ .+.|+|.++-
T Consensus 511 -----LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEC 585 (885)
T KOG2023|consen 511 -----LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLEC 585 (885)
T ss_pred -----hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHH
Confidence 12222222211 2223345566666666433 233333 3332 3456655432
Q ss_pred -HHHHHHHhccCCCc-------cHHHHHHHh---hcCCCC--------------HHHHHHHHHHHhhcC-----CccHHH
Q psy10052 356 -HELAYCLGQMKDSD-------ANDILRQVL---EDKSQE--------------PMVRHEAAEALGAIG-----DKSSIS 405 (500)
Q Consensus 356 -~~a~~aL~~l~~~~-------~~~~L~~~l---~~~~~~--------------~~vR~~a~~aL~~~~-----~~~~~~ 405 (500)
..++.+|+.---|- ....|.+.+ .....+ -++=..-+++||..- ......
T Consensus 586 lSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~ 665 (885)
T KOG2023|consen 586 LSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLD 665 (885)
T ss_pred HHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHH
Confidence 22333343211111 122222111 111001 123334555665432 235778
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhH
Q psy10052 406 ILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLR 485 (500)
Q Consensus 406 ~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~ 485 (500)
.+..++.|+.++||+.+..-||-+.....+... | --...++-|..-|..++- .+...|.||+|
T Consensus 666 lll~C~~D~~peVRQS~FALLGDltk~c~~~v~-----------p----~~~~fl~~lg~Nl~~~~i--sv~nNA~WAiG 728 (885)
T KOG2023|consen 666 LLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI-----------P----NLADFLPILGANLNPENI--SVCNNAIWAIG 728 (885)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc-----------c----hHHHHHHHHhhcCChhhc--hHHHHHHHHHH
Confidence 888999999999999999888888654322111 1 012455555554433333 48999999999
Q ss_pred hc
Q psy10052 486 DI 487 (500)
Q Consensus 486 ~~ 487 (500)
.|
T Consensus 729 ei 730 (885)
T KOG2023|consen 729 EI 730 (885)
T ss_pred HH
Confidence 88
No 25
>KOG4224|consensus
Probab=99.40 E-value=4.1e-11 Score=108.82 Aligned_cols=303 Identities=16% Similarity=0.128 Sum_probs=201.6
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCc----------chHHHHHHHccCCCHHHHHHHHHHHHccC------
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGK----------TAIQCISEAFADESALLKHELAYCLGQMK------ 66 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vR~~a~~~L~~~~------ 66 (500)
+.++.+....+|+|+++. +...|-..++++... .-++.|+.-+..+...+|..++.++..+.
T Consensus 83 sres~epvl~llqs~d~~--Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk 160 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKC--IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNK 160 (550)
T ss_pred hhhhhhHHHHHHhCcchh--hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccch
Confidence 345667778889999987 888888899865421 12444554444444466665555544332
Q ss_pred ----CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 67 ----DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 67 ----~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
...+...|.++-+.+ |..||+++..+|..+.. .+.+|.|+.+++..|+.||..|..+++.|+-+
T Consensus 161 ~kiA~sGaL~pltrLaksk--dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSK--DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccc--hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh
Confidence 134567777755555 88999999999987653 36789999999999999999999999999854
Q ss_pred ccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh----------hhHHHHHhhccC
Q psy10052 133 TEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV----------ESTLALTEGLSH 202 (500)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~----------~~i~~l~~~L~~ 202 (500)
.....+ +.. .. +..++.|+.++.+. ++.++..|-.+|+.+... ..+|.++++|++
T Consensus 239 ~~~Rk~-Laq-------ae-----p~lv~~Lv~Lmd~~--s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs 303 (550)
T KOG4224|consen 239 RRARKI-LAQ-------AE-----PKLVPALVDLMDDG--SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQS 303 (550)
T ss_pred HHHHHH-HHh-------cc-----cchHHHHHHHHhCC--ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhC
Confidence 322211 000 00 34589999999554 556899998898887653 467888888887
Q ss_pred CCHhHHHHHHHHHhcc----------CCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-----------chHHHHHH
Q psy10052 203 GSSLYRHEIAFVLGQM----------QNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT-----------PECYDVLR 261 (500)
Q Consensus 203 ~~~~vr~~a~~aL~~~----------~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~ 261 (500)
+.-..-.+.+.++..+ .+.+++.+|+.+|.-.+ +.+++..|...|-++.. .+++|.+.
T Consensus 304 ~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~ 382 (550)
T KOG4224|consen 304 PMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLI 382 (550)
T ss_pred cchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHH
Confidence 6544444444455332 24577888999997653 66788888888765442 35788999
Q ss_pred HhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHH
Q psy10052 262 KYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQ 341 (500)
Q Consensus 262 ~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~ 341 (500)
+++.|....|+...-.++..+...... . .++. +...++
T Consensus 383 eL~lD~pvsvqseisac~a~Lal~d~~------------------------------k---------~~ll---d~gi~~ 420 (550)
T KOG4224|consen 383 ELLLDGPVSVQSEISACIAQLALNDND------------------------------K---------EALL---DSGIIP 420 (550)
T ss_pred HHHhcCChhHHHHHHHHHHHHHhcccc------------------------------H---------HHHh---hcCCcc
Confidence 998888877877655555433221111 0 0011 123466
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhccCC
Q psy10052 342 CISEAFADKSALLKHELAYCLGQMKD 367 (500)
Q Consensus 342 ~L~~~l~~~~~~vr~~a~~aL~~l~~ 367 (500)
.|+.++.+.+.++|..++.+|+++..
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhhh
Confidence 77777777777777777777777754
No 26
>KOG2023|consensus
Probab=99.40 E-value=3.9e-11 Score=116.76 Aligned_cols=402 Identities=16% Similarity=0.098 Sum_probs=239.0
Q ss_pred hHhHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHc---cCCCHHHHHHHHHHHHcc--C-C----C-
Q psy10052 4 EEKILLIGQVLK---DSSKPLKERFRALFTLKNIGG-KTAIQCISEAF---ADESALLKHELAYCLGQM--K-D----S- 68 (500)
Q Consensus 4 ~~~~~~L~~~L~---~~~~~~~~R~~A~~~L~~~~~-~~~~~~L~~~l---~~~~~~vR~~a~~~L~~~--~-~----~- 68 (500)
+.-+.+++++|+ +|+.. +|..+...|.+... ++....|+-.| ++.+...|..|.-.|.+. + . .
T Consensus 9 e~~l~ql~~lLk~s~Spn~~--~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~ 86 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSE--TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSE 86 (885)
T ss_pred HHHHHHHHHHHHhccCCChH--HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChH
Confidence 345666777775 56664 99999999988653 22223333333 466777788877777653 1 1 1
Q ss_pred ---ccHHHHHHHhhccCCCHHHHHHHHHHHHhc-------CChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhh
Q psy10052 69 ---DANDILRQVLEDKSQEPMVRHEAAEALGAI-------GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ 138 (500)
Q Consensus 69 ---~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~ 138 (500)
......+..+.|. ++.+|.-.-..+..+ .+++.+|.|..+|..++....+.|..||.++..++...-
T Consensus 87 ~~~yiKs~~l~~lgd~--~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l- 163 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGDA--SPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL- 163 (885)
T ss_pred HHHHHHHHHHhhccCc--hHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH-
Confidence 1234455667777 677776655554443 357889999999999999999999999999987653211
Q ss_pred ccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC---C-------hhhHHHHHhhccCCCHhHH
Q psy10052 139 KDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN---S-------VESTLALTEGLSHGSSLYR 208 (500)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~---~-------~~~i~~l~~~L~~~~~~vr 208 (500)
.+-.+..++ +..++.+++++++ +++.+|..|+.++-.+- . ..+++.+..+-+|+++.||
T Consensus 164 -------ds~~~~rpl--~~mipkfl~f~~h--~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVR 232 (885)
T KOG2023|consen 164 -------DSDVLTRPL--NIMIPKFLQFFKH--PSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVR 232 (885)
T ss_pred -------hhhcccCch--HHhHHHHHHHHhC--CChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 111111112 4468999999955 46678999888776532 2 2355555555588999999
Q ss_pred HHHHHHHhcc---CCCCc-------HHHHHHHhhccCCCHHHHHHHHHHHhhcCCc------------hHHHHHHHhhc-
Q psy10052 209 HEIAFVLGQM---QNPSS-------IPALTSALEDQTQNEMVRHECAEALGAIATP------------ECYDVLRKYLS- 265 (500)
Q Consensus 209 ~~a~~aL~~~---~~~~~-------i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~- 265 (500)
+.++.++.-+ ..... +...+..-+| .|..|-..|++-+-.+... ..+|.|...+.
T Consensus 233 k~vC~alv~Llevr~dkl~phl~~IveyML~~tqd--~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Y 310 (885)
T KOG2023|consen 233 KNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD--VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVY 310 (885)
T ss_pred HHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC--cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCcc
Confidence 9999987543 22333 3333444445 4566888888877666543 23444443322
Q ss_pred -CCcHHHHHHHHHHhhhccccc-hhHh----HHHHhhhccCCCChHHH--HHHHHHhhc--CCCCHHHHHHHHH---HHH
Q psy10052 266 -DEKVVVRQSCEIALDMCDYEN-SVEL----QYADTLCKFKMIPEEKI--LLIGQVLKD--SSKPLKERFRALF---TLK 332 (500)
Q Consensus 266 -~~~~~vr~~a~~al~~l~~~~-~~~~----~~~~~l~~~~~~~~~~~--~~l~~~l~~--~~~~~~~r~~a~~---~L~ 332 (500)
+.|..+- +.-..+. -++. +....-++........- ..--.-..| ....|..|.-.+. .|.
T Consensus 311 sd~D~~LL-------~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa 383 (885)
T KOG2023|consen 311 SDDDIILL-------KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA 383 (885)
T ss_pred ccccHHHh-------cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH
Confidence 1121111 1000000 0000 00000000000000000 000000000 1122556654444 444
Q ss_pred hcCChhh----HHHHHHHhcCCCHHHHHHHHHHHhccCC----------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhc
Q psy10052 333 NIGGKTA----IQCISEAFADKSALLKHELAYCLGQMKD----------SDANDILRQVLEDKSQEPMVRHEAAEALGAI 398 (500)
Q Consensus 333 ~~~~~~~----~~~L~~~l~~~~~~vr~~a~~aL~~l~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~ 398 (500)
+.-..+. .|.|.+.|.+++|.+|.+.+-+||.+.. +..+|.|+.++.|+ .+-||.-.++.|++.
T Consensus 384 nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK--kplVRsITCWTLsRy 461 (885)
T KOG2023|consen 384 NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK--KPLVRSITCWTLSRY 461 (885)
T ss_pred HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC--ccceeeeeeeeHhhh
Confidence 4444444 4555566678899999999999998753 35789999999998 699999999999998
Q ss_pred CC--------ccHHHHHHHh---hcCCCHhHHHHHHHHHHHhhhh
Q psy10052 399 GD--------KSSISILEKY---AQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 399 ~~--------~~~~~~L~~~---l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
+. .-..|.|..+ +-|.+..|+++|+.|+..+...
T Consensus 462 s~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 462 SKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 63 1233444444 4599999999999999999764
No 27
>KOG2171|consensus
Probab=99.38 E-value=1.3e-09 Score=113.35 Aligned_cols=371 Identities=17% Similarity=0.153 Sum_probs=202.5
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHcc-CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----------hhHHH
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQM-KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISI 106 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~ 106 (500)
.+..|+..|-++|..+|..|-+++... +.+...+.|..++.... ||.+|..|+=.+.++... .....
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~ 83 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSA-DPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSS 83 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 456777788889999999999999955 55668888888888775 899999998777665321 12233
Q ss_pred HHHH-hcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy10052 107 LEKY-AQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLR 185 (500)
Q Consensus 107 L~~~-l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~ 185 (500)
|+.. .+.+.+.||......++.+....-.. +- +..++.|.++..+ +++..|..|+..|.
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----------------~W--Pell~~L~q~~~S--~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLPE----------------KW--PELLQFLFQSTKS--PNPSLRESALLILS 143 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhcccc----------------ch--HHHHHHHHHHhcC--CCcchhHHHHHHHH
Confidence 4444 36777999999888888876421100 00 2334555555544 44457888888776
Q ss_pred cCCC------h----hhHHHHHhhccCCCHhHHHHHHHHHhccCC-----C-------CcHHHHHHHhhcc--CCCHHHH
Q psy10052 186 DINS------V----ESTLALTEGLSHGSSLYRHEIAFVLGQMQN-----P-------SSIPALTSALEDQ--TQNEMVR 241 (500)
Q Consensus 186 ~~~~------~----~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----~-------~~i~~L~~~l~~~--~~~~~vr 241 (500)
.... . .....+.+.++|++..||..++++++.+.. . ..+|.++..+... +.+.+.-
T Consensus 144 s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a 223 (1075)
T KOG2171|consen 144 SLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAA 223 (1075)
T ss_pred hhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHH
Confidence 6421 1 344455556677666688888888765421 1 1122222222110 0111122
Q ss_pred HHHHHHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCH
Q psy10052 242 HECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPL 321 (500)
Q Consensus 242 ~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 321 (500)
..+.++|..+. ....+-++..-. ..+....++..+.+-+-
T Consensus 224 ~~~l~~l~El~------------e~~pk~l~~~l~----------------------------~ii~~~l~Ia~n~~l~~ 263 (1075)
T KOG2171|consen 224 KSALEALIELL------------ESEPKLLRPHLS----------------------------QIIQFSLEIAKNKELEN 263 (1075)
T ss_pred HHHHHHHHHHH------------hhchHHHHHHHH----------------------------HHHHHHHHHhhcccccH
Confidence 22223322221 111111111000 00111122222222222
Q ss_pred HHHHHHHHHHHhcC-------------ChhhHHHHHH----------Hh-----cCCC-HHHHHHHHHHHhcc----CCC
Q psy10052 322 KERFRALFTLKNIG-------------GKTAIQCISE----------AF-----ADKS-ALLKHELAYCLGQM----KDS 368 (500)
Q Consensus 322 ~~r~~a~~~L~~~~-------------~~~~~~~L~~----------~l-----~~~~-~~vr~~a~~aL~~l----~~~ 368 (500)
.+|..|+..+.... ....++.+.. +. ++++ ..--..+.+++.++ +..
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~ 343 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK 343 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh
Confidence 23333333222110 0111111111 11 1112 11234455555443 444
Q ss_pred ccHHH----HHHHhhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 369 DANDI----LRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 369 ~~~~~----L~~~l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
...+. +-.++.+. +|.-|.+++.||+.++. +++++.....++|+.|.||.+|+.+++++...-.
T Consensus 344 ~v~p~~~~~l~~~l~S~--~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~ 421 (1075)
T KOG2171|consen 344 QVLPPLFEALEAMLQST--EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ 421 (1075)
T ss_pred hehHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc
Confidence 44444 44555555 89999999999999864 4677888899999999999999999999976543
Q ss_pred cccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 435 EDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
+..+.. ......+.|+..+ |......|...|+.++-++
T Consensus 422 p~iqk~--------------~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf 459 (1075)
T KOG2171|consen 422 PEIQKK--------------HHERLPPALIALL-DSTQNVRVQAHAAAALVNF 459 (1075)
T ss_pred HHHHHH--------------HHHhccHHHHHHh-cccCchHHHHHHHHHHHHH
Confidence 322210 1123344666655 4444446777777777765
No 28
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=99.26 E-value=2.5e-11 Score=92.58 Aligned_cols=86 Identities=37% Similarity=0.501 Sum_probs=71.1
Q ss_pred HHHHHHHc-cCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcC-CCHH
Q psy10052 40 IQCISEAF-ADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQD-PVKE 117 (500)
Q Consensus 40 ~~~L~~~l-~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-~~~~ 117 (500)
++.|++.| +++++.+|..++++|++++++++++.|.++++|+ ++.||..|+++||.++++..++.|.+++.+ ++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~ 78 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDE--DPMVRRAAARALGRIGDPEAIPALIKLLQDDDDEV 78 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHH
Confidence 46778877 7888888888888888888888888888888777 788888888888888888888888887755 4567
Q ss_pred HHHHHHHHHH
Q psy10052 118 VSETCYLALK 127 (500)
Q Consensus 118 vr~~a~~aL~ 127 (500)
||..|+.+|+
T Consensus 79 vr~~a~~aL~ 88 (88)
T PF13646_consen 79 VREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcC
Confidence 7888888875
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=99.18 E-value=5.2e-11 Score=90.76 Aligned_cols=87 Identities=33% Similarity=0.479 Sum_probs=79.0
Q ss_pred HHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCH
Q psy10052 7 ILLIGQVL-KDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP 85 (500)
Q Consensus 7 ~~~L~~~L-~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~ 85 (500)
++.|++.| +++++ .+|..|++.|++++.+.+++.|.++++|+++.||..|+++|+.+++++.++.|.+.+.+++ +.
T Consensus 1 i~~L~~~l~~~~~~--~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~-~~ 77 (88)
T PF13646_consen 1 IPALLQLLQNDPDP--QVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIKLLQDDD-DE 77 (88)
T ss_dssp HHHHHHHHHTSSSH--HHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-S-SH
T ss_pred CHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCC-cH
Confidence 57889999 77765 4999999999999999999999999999999999999999999999999999999998875 67
Q ss_pred HHHHHHHHHHH
Q psy10052 86 MVRHEAAEALG 96 (500)
Q Consensus 86 ~vr~~a~~aL~ 96 (500)
.||..|+++||
T Consensus 78 ~vr~~a~~aL~ 88 (88)
T PF13646_consen 78 VVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 88999999986
No 30
>KOG1062|consensus
Probab=99.03 E-value=2.6e-07 Score=92.80 Aligned_cols=380 Identities=14% Similarity=0.125 Sum_probs=191.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCcch----HHHHHHHccCCCHHHHHHHHHHHHcc--CCCc----cHHHHHHH
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGGKTA----IQCISEAFADESALLKHELAYCLGQM--KDSD----ANDILRQV 77 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~----~~~L~~~l~~~~~~vR~~a~~~L~~~--~~~~----~~~~L~~~ 77 (500)
+.|..-|+|++.. +...|+-.|+.+..++. .+.+.+++++.++.+|..|+-++.++ ..++ .++...++
T Consensus 110 NslknDL~s~nq~--vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~l 187 (866)
T KOG1062|consen 110 NSLKNDLNSSNQY--VVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKL 187 (866)
T ss_pred HHHHhhccCCCee--ehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 4455566666665 66666666666665433 33344556666667766666666554 2222 23444455
Q ss_pred hhccCCCHHHHHHHHHHHHhcCCh---------hhHHHHHHHhcC---------------CCHHHHHHHHHHHHHhchhc
Q psy10052 78 LEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQD---------------PVKEVSETCYLALKRIQFVT 133 (500)
Q Consensus 78 L~~~~~d~~vr~~a~~aL~~~~~~---------~~~~~L~~~l~d---------------~~~~vr~~a~~aL~~~~~~~ 133 (500)
|.+. +..|-...+..+-.+... +..+.|+..|++ +||.++......|+-+|...
T Consensus 188 L~ek--~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d 265 (866)
T KOG1062|consen 188 LCEK--HHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND 265 (866)
T ss_pred Hhhc--CCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC
Confidence 5555 455555554444333211 123333333211 34555555555555554321
Q ss_pred cchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCH----HHHHHHHHHHHcCCCh-----hhHHHHHhhccCCC
Q psy10052 134 EEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL----FMRYKAMFKLRDINSV-----ESTLALTEGLSHGS 204 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~----~~r~~A~~~L~~~~~~-----~~i~~l~~~L~~~~ 204 (500)
.... +..-..|.+...+.+.+. .+-+..+.++-.+... -+++.|-++|.+++
T Consensus 266 ~daS-------------------d~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 266 ADAS-------------------DLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred ccHH-------------------HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence 1100 001122222222211111 1222233333333322 25555666666666
Q ss_pred HhHHHHHHHHHhccC--CCCc----HHHHHHHhhccCCCHHHHHHHHHHHhhcCCch----HHHHHHHhhcCCcHHHHHH
Q psy10052 205 SLYRHEIAFVLGQMQ--NPSS----IPALTSALEDQTQNEMVRHECAEALGAIATPE----CYDVLRKYLSDEKVVVRQS 274 (500)
Q Consensus 205 ~~vr~~a~~aL~~~~--~~~~----i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~vr~~ 274 (500)
..+|+-++..|.+.- ++.+ -..++++|+|+ |+.+|+.|.+.+-.+-... .+..|..+|...++.++..
T Consensus 327 ~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp--D~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 327 NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP--DVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHH
Confidence 666666666665543 2222 23577888874 5778888888776655432 4566667777777777777
Q ss_pred HHHHhhhccccchhHhHH-HH----hhhccCC-CChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHH---
Q psy10052 275 CEIALDMCDYENSVELQY-AD----TLCKFKM-IPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISE--- 345 (500)
Q Consensus 275 a~~al~~l~~~~~~~~~~-~~----~l~~~~~-~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~--- 345 (500)
++..+..+.....+...| .+ .+..-+. .....+..+..++.+...+.. ...+..|-.
T Consensus 405 ~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~--------------~y~~~rLy~a~~ 470 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH--------------EYAVLRLYLALS 470 (866)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh--------------hHHHHHHHHHHh
Confidence 766655443332221111 00 0000000 011122233333333211100 001111111
Q ss_pred ---HhcCCCHHHHHHHHHHHhccCC----------------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC------
Q psy10052 346 ---AFADKSALLKHELAYCLGQMKD----------------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 400 (500)
Q Consensus 346 ---~l~~~~~~vr~~a~~aL~~l~~----------------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~------ 400 (500)
++.-..+.+-..++|++|++++ ..++..|.+++...+.+..++..|+.||.++..
T Consensus 471 ~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~ 550 (866)
T KOG1062|consen 471 EDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSS 550 (866)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccH
Confidence 1112234456778999999983 236788888887665579999999999988743
Q ss_pred ccHHHHHHHhhcCCCHhHHHHHHHHH
Q psy10052 401 KSSISILEKYAQDPVKEVSETCYLAL 426 (500)
Q Consensus 401 ~~~~~~L~~~l~d~~~~vr~~A~~aL 426 (500)
+++-..+..+....+-++|+.|.+-=
T Consensus 551 ~ri~~lI~~~~~s~~~elQQRa~E~~ 576 (866)
T KOG1062|consen 551 ERIKQLISSYKSSLDTELQQRAVEYN 576 (866)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHH
Confidence 23334444455667888888887643
No 31
>KOG1241|consensus
Probab=99.01 E-value=3.6e-07 Score=91.16 Aligned_cols=420 Identities=17% Similarity=0.161 Sum_probs=242.0
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCc---chHHHHHHHccC--CCHHHHHHHHHHHHccC---C------------------
Q psy10052 14 LKDSSKPLKERFRALFTLKNIGGK---TAIQCISEAFAD--ESALLKHELAYCLGQMK---D------------------ 67 (500)
Q Consensus 14 L~~~~~~~~~R~~A~~~L~~~~~~---~~~~~L~~~l~~--~~~~vR~~a~~~L~~~~---~------------------ 67 (500)
--+||.. +|.+|-..|.+.... ..+..|.+.|.+ .+...|..|.-.|.+.- +
T Consensus 10 tlSpD~n--~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 10 TLSPDQN--VRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred HcCCCcc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 4577776 999999999887643 344555566643 34677888777776541 1
Q ss_pred -CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhcCCCHH-HHHHHHHHHHHhchhccchh
Q psy10052 68 -SDANDILRQVLEDKSQEPMVRHEAAEALGAIG--------DKSSISILEKYAQDPVKE-VSETCYLALKRIQFVTEEDK 137 (500)
Q Consensus 68 -~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~-vr~~a~~aL~~~~~~~~~~~ 137 (500)
......+...|..+ .|.....|+.+++.+. +++.+..|+.-..++.+. +++...+++|.++.+-....
T Consensus 88 reqVK~~il~tL~~~--ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pev 165 (859)
T KOG1241|consen 88 REQVKNNILRTLGSP--EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEV 165 (859)
T ss_pred HHHHHHHHHHHcCCC--CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHH
Confidence 11234445566655 5667777777776653 356667777766666665 99999999999986543321
Q ss_pred hccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcC--------CChh----hHHHHHhhccCCCH
Q psy10052 138 QKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI--------NSVE----STLALTEGLSHGSS 205 (500)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~--------~~~~----~i~~l~~~L~~~~~ 205 (500)
..... +..+..++.......++..+|.+|..+|.+- .... .+....+..+.++.
T Consensus 166 l~~~s--------------N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 166 LEQQS--------------NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE 231 (859)
T ss_pred HHHHH--------------hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH
Confidence 10000 2345555566655566777999999888652 1211 22334445567888
Q ss_pred hHHHHHHHHHhccCC-----------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHH---HhhcCC-cHH
Q psy10052 206 LYRHEIAFVLGQMQN-----------PSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLR---KYLSDE-KVV 270 (500)
Q Consensus 206 ~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~---~~l~~~-~~~ 270 (500)
.++.++..+|.++-. +..+..-+..+.+ .+.+|...+++-.+.+..++ ++... +..... .|.
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks--~~deValQaiEFWsticeEE-iD~~~e~~e~~d~~~~p~ 308 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS--DNDEVALQAIEFWSTICEEE-IDLAIEYGEAVDQGLPPS 308 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCch
Confidence 999999988876542 1122222333443 45677777777776665443 12111 111111 111
Q ss_pred HHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCC-----CHHHHHHH---HHHHHhcCChh----
Q psy10052 271 VRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSK-----PLKERFRA---LFTLKNIGGKT---- 338 (500)
Q Consensus 271 vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~-----~~~~r~~a---~~~L~~~~~~~---- 338 (500)
-..-+..++. ..+|.|.++|...++ .|..-.+| +..+.+...+.
T Consensus 309 ~~~fa~~a~~------------------------~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~ 364 (859)
T KOG1241|consen 309 SKYFARQALQ------------------------DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPH 364 (859)
T ss_pred hhHHHHHHHh------------------------HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhh
Confidence 0111111111 123455555544221 13222222 23333444444
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC-------
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD------- 400 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~------- 400 (500)
+++.+.+-+.++|+.-|.+++-++|.+-+. .+.|.++.++.|+ .-.+|.++.+.||++.+
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhchhhcc
Confidence 444555567788999999999999987542 3788888888877 68889999999998753
Q ss_pred -----ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCC-ccH
Q psy10052 401 -----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNEN-EDL 474 (500)
Q Consensus 401 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~ 474 (500)
...++.|.+.++| .|.|...++|++..+.......... + +..++.-+ .=+..+..|++.-...+ .+.
T Consensus 443 n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s---~--~qt~~~t~-~y~~ii~~Ll~~tdr~dgnqs 515 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVS---N--GQTDPATP-FYEAIIGSLLKVTDRADGNQS 515 (859)
T ss_pred cHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccC---C--CCCCccch-hHHHHHHHHHhhccccccchh
Confidence 1345666666776 5789999999999987543211110 0 11111111 01234444444332222 344
Q ss_pred HHHHHHHHHhHhc
Q psy10052 475 FMRYKAMFKLRDI 487 (500)
Q Consensus 475 ~~r~~a~~al~~~ 487 (500)
..|..|=.||+.+
T Consensus 516 NLR~AAYeALmEl 528 (859)
T KOG1241|consen 516 NLRSAAYEALMEL 528 (859)
T ss_pred hHHHHHHHHHHHH
Confidence 6888888888877
No 32
>KOG1241|consensus
Probab=99.00 E-value=4.6e-07 Score=90.46 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=188.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCC---c-------------------chHHHHHHHccCCCHHHHHHHHHHHHcc
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGG---K-------------------TAIQCISEAFADESALLKHELAYCLGQM 65 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~---~-------------------~~~~~L~~~l~~~~~~vR~~a~~~L~~~ 65 (500)
..|.+.|.+++.....|..|...|++--. + ..-..++..|+++.|..+..|..+++.+
T Consensus 38 ~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~I 117 (859)
T KOG1241|consen 38 VLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAI 117 (859)
T ss_pred HHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHH
Confidence 34555666655555688888888887432 1 1222344566677777777777777766
Q ss_pred CC----CccHHHHHHHh----hccCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHh--cCCCHHHHHHHHH
Q psy10052 66 KD----SDANDILRQVL----EDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYA--QDPVKEVSETCYL 124 (500)
Q Consensus 66 ~~----~~~~~~L~~~L----~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l--~d~~~~vr~~a~~ 124 (500)
.. ...+|.|+..| .++. ...++..+++++|.+... ..+-.++... ..++..||.+|..
T Consensus 118 A~~ElP~n~wp~li~~lv~nv~~~~-~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~ 196 (859)
T KOG1241|consen 118 ACIELPQNQWPELIVTLVSNVGEEQ-ASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALN 196 (859)
T ss_pred HHhhCchhhCHHHHHHHHHhccccc-chHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHH
Confidence 32 23345555444 4442 336999999999998753 2233344444 4667899999999
Q ss_pred HHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh-----------hhH
Q psy10052 125 ALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV-----------EST 193 (500)
Q Consensus 125 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~-----------~~i 193 (500)
||.+--.... ..|..-... .-......+.. ..++..++.+|+.+|.++-.- ..+
T Consensus 197 aL~nsLef~~--------~nF~~E~er-----n~iMqvvcEat--q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf 261 (859)
T KOG1241|consen 197 ALYNSLEFTK--------ANFNNEMER-----NYIMQVVCEAT--QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF 261 (859)
T ss_pred HHHHHHHHHH--------HhhccHhhh-----ceeeeeeeecc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9976322110 000000000 11122233333 345667899999999886431 123
Q ss_pred HHHHhhccCCCHhHHHHHHHHHhccC-----------------CC------------CcHHHHHHHhhcc-----CCCHH
Q psy10052 194 LALTEGLSHGSSLYRHEIAFVLGQMQ-----------------NP------------SSIPALTSALEDQ-----TQNEM 239 (500)
Q Consensus 194 ~~l~~~L~~~~~~vr~~a~~aL~~~~-----------------~~------------~~i~~L~~~l~~~-----~~~~~ 239 (500)
..-+..++++++.|..++++-...+. .+ ..+|.|++.|... ++++.
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 33444557788889888877654222 12 4567777777531 12344
Q ss_pred HHHHHHHHHhhcC---C----chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHH
Q psy10052 240 VRHECAEALGAIA---T----PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQ 312 (500)
Q Consensus 240 vr~~a~~aL~~~~---~----~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 312 (500)
.-.+|...|.-+. . +..+|.+.+-+++|+|.-|.+++-++|.+-.+....... .-....++.+..
T Consensus 342 p~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt--------~iV~qalp~ii~ 413 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLT--------PIVIQALPSIIN 413 (859)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhh--------HHHhhhhHHHHH
Confidence 4555555553222 1 235667777788888888888888888665443332100 001233455666
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCC------------hhhHHHHHHHhcCCCHHHHHHHHHHHhccC
Q psy10052 313 VLKDSSKPLKERFRALFTLKNIGG------------KTAIQCISEAFADKSALLKHELAYCLGQMK 366 (500)
Q Consensus 313 ~l~~~~~~~~~r~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 366 (500)
+..| +.+.+|..+.++++++.+ ...+..+++.|.| .+.+-.+++|++-.+.
T Consensus 414 lm~D--~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 414 LMSD--PSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLA 476 (859)
T ss_pred HhcC--chhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Confidence 6553 345677777788876653 1223344444433 4667777777766553
No 33
>KOG1060|consensus
Probab=99.00 E-value=2.2e-07 Score=92.92 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=69.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCCHHHHHHHHHHHhccC---CCc---cHHHHH
Q psy10052 308 LLIGQVLKDSSKPLKERFRALFTLKNIGG------KTAIQCISEAFADKSALLKHELAYCLGQMK---DSD---ANDILR 375 (500)
Q Consensus 308 ~~l~~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~---~~~---~~~~L~ 375 (500)
..+...+.+.+. ..-..++.++|+++. +..+..|+.++++.+..|-.+++..+..+- ... .+..|.
T Consensus 395 rE~q~YI~s~d~--~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La 472 (968)
T KOG1060|consen 395 RELQTYIKSSDR--SFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLA 472 (968)
T ss_pred HHHHHHHhcCch--hHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 344445555554 255667777776653 455678888888877777766666655542 222 344455
Q ss_pred HHhhcCCCCHHHHHHHHHHHhhcCC------ccHHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 376 QVLEDKSQEPMVRHEAAEALGAIGD------KSSISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 376 ~~l~~~~~~~~vR~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
+++..- .-+..|...++.+|.... |+++..+.+-..++.+.|+.....--.++
T Consensus 473 ~lldti-~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 473 RLLDTI-LVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred HHhhhh-hhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 555332 246667767776665432 34455555555677777776665544443
No 34
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.97 E-value=2.9e-07 Score=88.92 Aligned_cols=407 Identities=17% Similarity=0.171 Sum_probs=203.0
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHccC--CCccHHHHHHHhhcc--CCCHHHHHHHHHHHHhcCChhhHHHHHHHh----
Q psy10052 40 IQCISEAFADESALLKHELAYCLGQMK--DSDANDILRQVLEDK--SQEPMVRHEAAEALGAIGDKSSISILEKYA---- 111 (500)
Q Consensus 40 ~~~L~~~l~~~~~~vR~~a~~~L~~~~--~~~~~~~L~~~L~~~--~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l---- 111 (500)
.=.+.+++.+.|+.+|...-.++.++. .++.+-..-.+++|- +.+..+|-.|++.|-..-+.+.++.+.+++
T Consensus 67 ff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~ 146 (898)
T COG5240 67 FFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAF 146 (898)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhc
Confidence 335678889999999987555555543 233333333344442 114479999999999887766666665555
Q ss_pred cCCCHHHHHHHHHHHHHhchhc---------cchhh--ccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHH
Q psy10052 112 QDPVKEVSETCYLALKRIQFVT---------EEDKQ--KDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 180 (500)
Q Consensus 112 ~d~~~~vr~~a~~aL~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A 180 (500)
-++.+.+|.+|.-.-..+-... ..+.. .+++.+++..... ..++.++..++.|
T Consensus 147 Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~g----------------y~Pn~~~isqYHa 210 (898)
T COG5240 147 VSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEG----------------YEPNGNPISQYHA 210 (898)
T ss_pred cccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcc----------------cCCCCChHHHHHH
Confidence 5778888887776654442111 11100 1222222211100 0123344456666
Q ss_pred HHHHHcCCChh--hHHHHHhhccCCCHhHHHHH-----HHHHhcc--CCCCcHHHHHHHhhcc--CCCHHHHHHHHHHHh
Q psy10052 181 MFKLRDINSVE--STLALTEGLSHGSSLYRHEI-----AFVLGQM--QNPSSIPALTSALEDQ--TQNEMVRHECAEALG 249 (500)
Q Consensus 181 ~~~L~~~~~~~--~i~~l~~~L~~~~~~vr~~a-----~~aL~~~--~~~~~i~~L~~~l~~~--~~~~~vr~~a~~aL~ 249 (500)
+-.|.+....+ +...+++++..+. .+..+. +++...+ .++++...+..+|++. +.-.+|...++++++
T Consensus 211 lGlLyq~kr~dkma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~ 289 (898)
T COG5240 211 LGLLYQSKRTDKMAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVC 289 (898)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 66666554322 3344455554332 222111 1111111 1334444444444321 123578888888877
Q ss_pred hcC-----Cc---hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCH
Q psy10052 250 AIA-----TP---ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPL 321 (500)
Q Consensus 250 ~~~-----~~---~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 321 (500)
.+. +. ..+..|..+|+++....|-.|.+.|..+.-..+...- -.-+.+..++.+.+..
T Consensus 290 ~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-------------vcN~evEsLIsd~Nr~- 355 (898)
T COG5240 290 ALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-------------VCNKEVESLISDENRT- 355 (898)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-------------ecChhHHHHhhccccc-
Confidence 643 32 3577788889999889999998888765432211000 0001233334444433
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHh----cCC--------------------------------------CHHHHHHHH
Q psy10052 322 KERFRALFTLKNIGGKTAIQCISEAF----ADK--------------------------------------SALLKHELA 359 (500)
Q Consensus 322 ~~r~~a~~~L~~~~~~~~~~~L~~~l----~~~--------------------------------------~~~vr~~a~ 359 (500)
.-.-|+..|-+.|+.+.++.|+..+ .|- ..+.+..++
T Consensus 356 -IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~V 434 (898)
T COG5240 356 -ISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMV 434 (898)
T ss_pred -chHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 2234444555555554444443322 222 233333333
Q ss_pred HHHhccCC--C----ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc-----cHHHHHHHhhcCCCHhHHHHHHHHHHH
Q psy10052 360 YCLGQMKD--S----DANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----SSISILEKYAQDPVKEVSETCYLALKR 428 (500)
Q Consensus 360 ~aL~~l~~--~----~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~-----~~~~~L~~~l~d~~~~vr~~A~~aL~~ 428 (500)
.++..+-. | .++..|...++|. +-+.+-...+..||+=|.. ..+.-+...+-=++..||.+|+.||.+
T Consensus 435 daisd~~~~~p~skEraLe~LC~fIEDc-ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLsk 513 (898)
T COG5240 435 DAISDAMENDPDSKERALEVLCTFIEDC-EYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSK 513 (898)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHhhc-chhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33332210 1 1333333333332 1222222222223322211 122222222212345677777777776
Q ss_pred hhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcCChhhHHHhhc
Q psy10052 429 IQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTE 498 (500)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g~~~~~~~l~~ 498 (500)
.+-.. .|+..+ .+....|.+.|. ++|+.+|.+|.++|.++....+..+|.+
T Consensus 514 f~ln~--------------~d~~~~---~sv~~~lkRcln--D~DdeVRdrAsf~l~~~~~~da~~pl~~ 564 (898)
T COG5240 514 FALNI--------------SDVVSP---QSVENALKRCLN--DQDDEVRDRASFLLRNMRLSDACEPLFS 564 (898)
T ss_pred hccCc--------------cccccH---HHHHHHHHHHhh--cccHHHHHHHHHHHHhhhhhhhhhcccc
Confidence 65322 222222 355566778884 5667799999999999998888887653
No 35
>KOG0211|consensus
Probab=98.92 E-value=6.3e-07 Score=92.66 Aligned_cols=414 Identities=17% Similarity=0.198 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHHhcCCc-------chHHHHHHHccCCCH-HHHHHHHHHHHccCC----C----ccHHHHHHHhhccCCC
Q psy10052 21 LKERFRALFTLKNIGGK-------TAIQCISEAFADESA-LLKHELAYCLGQMKD----S----DANDILRQVLEDKSQE 84 (500)
Q Consensus 21 ~~~R~~A~~~L~~~~~~-------~~~~~L~~~l~~~~~-~vR~~a~~~L~~~~~----~----~~~~~L~~~L~~~~~d 84 (500)
+.+|..++..+...... ...-++...+...++ .-|..+.-..+.... . +..+...++-+|. +
T Consensus 173 t~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~--~ 250 (759)
T KOG0211|consen 173 TGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDD--T 250 (759)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhcccc--c
Confidence 45788888888765421 122233333332232 345555555554421 1 1223333444555 7
Q ss_pred HHHHHHHHHHHHhcCC--------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccch-hhccccCcCCCCCCCCCCC
Q psy10052 85 PMVRHEAAEALGAIGD--------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEED-KQKDTGNIYGSVDPTPPLD 155 (500)
Q Consensus 85 ~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (500)
++||+.++.-+|.+.. ....+.+..+..|+...||..|..++..+..-...+ .. .
T Consensus 251 ~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~------------~---- 314 (759)
T KOG0211|consen 251 PMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDV------------V---- 314 (759)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhh------------h----
Confidence 9999999999998763 245678888899999999999999998876532211 00 0
Q ss_pred CcccHHHHHHHhcCCCcCHHHHHHHHHHHHc--------CCChhhHHHHHhhccCCCHhHHHHHHHHHhccC--------
Q psy10052 156 DVSDINKLKEILLNENEDLFMRYKAMFKLRD--------INSVESTLALTEGLSHGSSLYRHEIAFVLGQMQ-------- 219 (500)
Q Consensus 156 ~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~--------~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~-------- 219 (500)
....+.+++...|. +..+|+........ .+....++.....+++....+|.+++.-...+.
T Consensus 315 -~~~~~~l~~~~~d~--~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 315 -KSLTESLVQAVEDG--SWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred -hhhhHHHHHHhcCh--hHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 12355666666544 44466654433322 122355677777888888889988877554433
Q ss_pred ----CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC----C----chHHHHHHHhhcCCcHHHHHHHHHHhhhccccch
Q psy10052 220 ----NPSSIPALTSALEDQTQNEMVRHECAEALGAIA----T----PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENS 287 (500)
Q Consensus 220 ----~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~ 287 (500)
...++|.+..+..+ .+..||.+.+....... . ....|.+...++|..+.||...+.-+..+..-..
T Consensus 392 ~~i~~~~ilp~~~~lv~d--~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~ 469 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLD--NALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND 469 (759)
T ss_pred cccchhhhhHHHHHHHhc--ccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccC
Confidence 12345777777766 34667766555443321 1 2346788888999999999988754322110000
Q ss_pred hHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc----C----ChhhHHHHHHHhcCCCHHHHHHHH
Q psy10052 288 VELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNI----G----GKTAIQCISEAFADKSALLKHELA 359 (500)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~----~----~~~~~~~L~~~l~~~~~~vr~~a~ 359 (500)
...+.......++.+..+..+. .|.+|.+.++.+... + ++...+.+..++.+....+|.++.
T Consensus 470 --------v~g~~~~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 470 --------VIGISTVSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAA 539 (759)
T ss_pred --------cccchhhhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0000111122345555554444 477777777755432 2 234445666777788889999988
Q ss_pred HHHhcc----C----CCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC----C----ccHHHHHHHhhcCCCHhHHHHHH
Q psy10052 360 YCLGQM----K----DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG----D----KSSISILEKYAQDPVKEVSETCY 423 (500)
Q Consensus 360 ~aL~~l----~----~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~ 423 (500)
..+..+ | ....++.++....++ ++.+|.+.+.++..+. . ...++.+..+..|+.+.||..++
T Consensus 540 ~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nva 617 (759)
T KOG0211|consen 540 RNLPALVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVA 617 (759)
T ss_pred HHhHHHHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHH
Confidence 776543 2 123566777766665 5999998888876542 2 35778888899999999999999
Q ss_pred HHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 424 LALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 424 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
..|..+.+.-.... . .+.+.++.+.|. ++++..+|+.|..+++-+.
T Consensus 618 k~L~~i~~~L~~~~-----------------~-~~~v~pll~~L~-~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 618 KHLPKILKLLDESV-----------------R-DEEVLPLLETLS-SDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHHHHhhcchHH-----------------H-HHHHHHHHHHhc-cCcccchhHHHHHHHHHHH
Confidence 99999987543211 1 244444444453 4666679999999988774
No 36
>KOG2062|consensus
Probab=98.92 E-value=2.6e-07 Score=91.79 Aligned_cols=305 Identities=22% Similarity=0.254 Sum_probs=192.2
Q ss_pred hhcCCCCCHHHHHHHHHHHHhc--CC-cchHHHHHHHcc-C---CCHHHHHHHHHHHHccCC---CccHHHHHHHhhccC
Q psy10052 13 VLKDSSKPLKERFRALFTLKNI--GG-KTAIQCISEAFA-D---ESALLKHELAYCLGQMKD---SDANDILRQVLEDKS 82 (500)
Q Consensus 13 ~L~~~~~~~~~R~~A~~~L~~~--~~-~~~~~~L~~~l~-~---~~~~vR~~a~~~L~~~~~---~~~~~~L~~~L~~~~ 82 (500)
+|.....| -.+.|...|+-+ |. .+....+...|- + ++.+-.-.|+++||-+.. ....+.|...|++.+
T Consensus 349 WlskAtNW--aKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~ 426 (929)
T KOG2062|consen 349 WLSKATNW--AKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAE 426 (929)
T ss_pred HHhhcchH--hhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhcc
Confidence 44433443 777788888754 33 345666666774 2 455666678888887631 346788888888775
Q ss_pred CCHHHHHHHHHHHHhcC----ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhh--cccc--CcCC--CCCCCC
Q psy10052 83 QEPMVRHEAAEALGAIG----DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ--KDTG--NIYG--SVDPTP 152 (500)
Q Consensus 83 ~d~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~--~~~~--~~~~--~~~~~~ 152 (500)
++.||..++--||-.+ +.+..+.|...|..++...-++|..+++-+.-....... .+.. +..+ .+-.+.
T Consensus 427 -~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl 505 (929)
T KOG2062|consen 427 -NEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGL 505 (929)
T ss_pred -chhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHH
Confidence 6778888887766543 235566777777666665566676666654321111100 0000 0000 000000
Q ss_pred CC-------CCcccHHHHH-HHhcCCCcCHHHHHHHHHHHHc----CCChhhHHHHHhh-ccCCCHhHHHHHHHHHhcc-
Q psy10052 153 PL-------DDVSDINKLK-EILLNENEDLFMRYKAMFKLRD----INSVESTLALTEG-LSHGSSLYRHEIAFVLGQM- 218 (500)
Q Consensus 153 ~~-------~~~~~~~~L~-~~l~d~~~~~~~r~~A~~~L~~----~~~~~~i~~l~~~-L~~~~~~vr~~a~~aL~~~- 218 (500)
++ +.+...+.++ +++.| .|+..|...+.+++- .+...++..|+.. .+|.+.+||++|+-+||-+
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeE
Confidence 00 0022334444 45544 367789887665542 3455777777775 6789999999999999876
Q ss_pred -CCCCcHHHHHHHhhccCCCHHHHHHHHHHHhh----cCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHH
Q psy10052 219 -QNPSSIPALTSALEDQTQNEMVRHECAEALGA----IATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYA 293 (500)
Q Consensus 219 -~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~----~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ 293 (500)
.+++..|..+++|... .|+-||..++.+||- .|...++..|..+.+|+..-||+.|+.+++.|.......
T Consensus 584 ~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~---- 658 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ---- 658 (929)
T ss_pred ecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc----
Confidence 4788899999999864 789999999999984 345568999999999999999999999998775443321
Q ss_pred HhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy10052 294 DTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLK 332 (500)
Q Consensus 294 ~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~ 332 (500)
+..........+.+++.+.+++..+...|+-+-|
T Consensus 659 -----~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqG 692 (929)
T KOG2062|consen 659 -----LCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQG 692 (929)
T ss_pred -----cCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 1111122334666777777776667777776554
No 37
>KOG1060|consensus
Probab=98.87 E-value=7.5e-06 Score=82.30 Aligned_cols=430 Identities=13% Similarity=0.129 Sum_probs=236.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CC--cchHHHHHHHccCCCHHHHHHHHHHHHccCCC------ccHHHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNI---GG--KTAIQCISEAFADESALLKHELAYCLGQMKDS------DANDIL 74 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~---~~--~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~------~~~~~L 74 (500)
....|.++|.+.... ....|...+-.+ |. ...++.+++...+.+..|+.-.--.|-+.... -.+..+
T Consensus 36 ~~~dL~~lLdSnkd~--~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntf 113 (968)
T KOG1060|consen 36 RHDDLKQLLDSNKDS--LKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTF 113 (968)
T ss_pred ChHHHHHHHhccccH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHH
Confidence 456788888876654 666666555442 22 35778888888899999887655555555321 247888
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhcCChhhHH----HHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCC
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAIGDKSSIS----ILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDP 150 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~----~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 150 (500)
-+.|+|+ ++.+|.+|++.|..|.-+-..| .+.++..|+.+.||..|+.|+-++-.......
T Consensus 114 Qk~L~Dp--N~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k------------- 178 (968)
T KOG1060|consen 114 QKALKDP--NQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK------------- 178 (968)
T ss_pred HhhhcCC--cHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH-------------
Confidence 9999999 7999999999999998765444 45567799999999999999988753221110
Q ss_pred CCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh------hhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcH
Q psy10052 151 TPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV------ESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSI 224 (500)
Q Consensus 151 ~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~------~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i 224 (500)
...++.+-.+|.|. ++.|--.|+.+...+... +-...+.+.|.+-+..-+..++..|.++...+..
T Consensus 179 ------~qL~e~I~~LLaD~--splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 179 ------DQLEEVIKKLLADR--SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLP 250 (968)
T ss_pred ------HHHHHHHHHHhcCC--CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCC
Confidence 11234444455554 334677777777766543 2345566666654443444455544433211111
Q ss_pred HH-HH-HHhhccCCCHHHHHHHHHHHhhcC-----CchH---HHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHH
Q psy10052 225 PA-LT-SALEDQTQNEMVRHECAEALGAIA-----TPEC---YDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYAD 294 (500)
Q Consensus 225 ~~-L~-~~l~~~~~~~~vr~~a~~aL~~~~-----~~~~---~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~ 294 (500)
.+ .. ..+.+...+....- .-+.+. +++. +.....++.+.++.|-.+++++.-.+.....
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~----~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~------- 319 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKD----KYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ------- 319 (968)
T ss_pred CccccccccccCcccccccc----cccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------
Confidence 11 00 01111000000000 000111 1111 2222335566677777777766643332211
Q ss_pred hhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC--Chhh-HHHHHHHh-cCC-CHHHHHHHHHHHhccCCCc
Q psy10052 295 TLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG--GKTA-IQCISEAF-ADK-SALLKHELAYCLGQMKDSD 369 (500)
Q Consensus 295 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~--~~~~-~~~L~~~l-~~~-~~~vr~~a~~aL~~l~~~~ 369 (500)
....++.|..++..... +++..+..+..+. .+.. .|.+...+ .+. ...++.-=+..|..+.+..
T Consensus 320 --------~~~i~kaLvrLLrs~~~---vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es 388 (968)
T KOG1060|consen 320 --------VTKIAKALVRLLRSNRE---VQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANES 388 (968)
T ss_pred --------HHHHHHHHHHHHhcCCc---chhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc
Confidence 01224466666666543 3444444333332 1222 23333322 223 3345555556666666555
Q ss_pred cHHH----HHHHhhcCCCCHHHHHHHHHHHhhcCC------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhccc-c
Q psy10052 370 ANDI----LRQVLEDKSQEPMVRHEAAEALGAIGD------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDK-Q 438 (500)
Q Consensus 370 ~~~~----L~~~l~~~~~~~~vR~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~-~ 438 (500)
-+.. +...+.+. +..+-..+++|+|+-+. +.++..|..+++..+..|-..++..+.++-..+...- .
T Consensus 389 ni~~ILrE~q~YI~s~--d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ 466 (968)
T KOG1060|consen 389 NISEILRELQTYIKSS--DRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE 466 (968)
T ss_pred cHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH
Confidence 4444 44444444 45677888888887653 4677888888888888888888888888765443321 0
Q ss_pred --------c---ccC-------CCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHh
Q psy10052 439 --------K---DTG-------NIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRD 486 (500)
Q Consensus 439 --------~---~~~-------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~ 486 (500)
. ... +.+|......+.-.+..+..+.+...++ .+.+|.+...--.+
T Consensus 467 ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E--~~evKlQILnL~aK 530 (968)
T KOG1060|consen 467 ILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDE--GDEVKLQILNLSAK 530 (968)
T ss_pred HHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccc--cchhhHHHHHhhhh
Confidence 0 000 1223334333333566777777777544 44577766554333
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.86 E-value=5.8e-06 Score=83.98 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=112.5
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-----------CcchHHHHHHHccCCCHHHHHHHHHHHHccCC-C----
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIG-----------GKTAIQCISEAFADESALLKHELAYCLGQMKD-S---- 68 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~-----------~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-~---- 68 (500)
.-.+.|...|.|+++. +|..+.+.++++. +...++.++.++.++|..|...|+.+|..+.. +
T Consensus 77 ~~~~~L~~gL~h~~~~--Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPK--VRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 4457788899999986 9999999988853 24678888899999999999999999998843 1
Q ss_pred -----ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 69 -----DANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 69 -----~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
.....|..++... +..+|..+.+.+..+.. .+.++.++..+.++|.-|+..+++.|..+...
T Consensus 155 ~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 1245567777765 57899999998888753 24678888889999999999999999998753
Q ss_pred ccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCH
Q psy10052 133 TEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL 174 (500)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~ 174 (500)
...... + .+.+.++.|...+.+...++
T Consensus 233 ~~g~~y-L--------------~~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 233 PHGLQY-L--------------EQQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred hhHHHH-H--------------HhCCHHHHHHHHHhccccCC
Confidence 221100 0 00345777888886655554
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.85 E-value=8e-06 Score=82.95 Aligned_cols=226 Identities=18% Similarity=0.202 Sum_probs=151.7
Q ss_pred HHHHccCCCHHHHHHHHHHHHccC--------CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-----------Chhh
Q psy10052 43 ISEAFADESALLKHELAYCLGQMK--------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-----------DKSS 103 (500)
Q Consensus 43 L~~~l~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-----------~~~~ 103 (500)
+..+|.+.+...-..++..|..+- .+...+.|...|.++ ++.||..+++.++++. +.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 666777666555556666665541 134568888899998 7999999999998853 3467
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHH
Q psy10052 104 ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFK 183 (500)
Q Consensus 104 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~ 183 (500)
++.+..++.|+|..|...|+.+|.++......... +. .......|...+... +..+|..+...
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~-l~--------------~~~~~~~L~~l~~~~--~~~vR~Rv~el 183 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ-LF--------------DSNLLSKLKSLMSQS--SDIVRCRVYEL 183 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH-Hh--------------CcchHHHHHHHHhcc--CHHHHHHHHHH
Confidence 88899999999999999999999999753211100 00 012256677777442 33466666666
Q ss_pred HHcCCC-----------hhhHHHHHhhccCCCHhHHHHHHHHHhccC----------CCCcHHHHHHHhhccCCCHHHH-
Q psy10052 184 LRDINS-----------VESTLALTEGLSHGSSLYRHEIAFVLGQMQ----------NPSSIPALTSALEDQTQNEMVR- 241 (500)
Q Consensus 184 L~~~~~-----------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~----------~~~~i~~L~~~l~~~~~~~~vr- 241 (500)
+..+.. ...++.++..++++|..++..++..+..+. ..+.++.|...+.+.+.+|...
T Consensus 184 ~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~ 263 (503)
T PF10508_consen 184 LVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS 263 (503)
T ss_pred HHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccc
Confidence 655432 246778888888999999999999887764 3467888888887765565111
Q ss_pred ---HHHHHHHhhcCC----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccch
Q psy10052 242 ---HECAEALGAIAT----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENS 287 (500)
Q Consensus 242 ---~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~ 287 (500)
-..+...|.+.. +..+..+...+.+.|...+..|+.++|.++....
T Consensus 264 ~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 111122222222 2234455566778899999999999998875543
No 40
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.8e-07 Score=88.06 Aligned_cols=299 Identities=18% Similarity=0.201 Sum_probs=201.1
Q ss_pred HHHHHHHHHHcCCC---hhhHHHHHhhccCCCHhHH---HHHHHHHhccC---CCCcHHHHHHHhhccC--CCHHHHHHH
Q psy10052 176 MRYKAMFKLRDINS---VESTLALTEGLSHGSSLYR---HEIAFVLGQMQ---NPSSIPALTSALEDQT--QNEMVRHEC 244 (500)
Q Consensus 176 ~r~~A~~~L~~~~~---~~~i~~l~~~L~~~~~~vr---~~a~~aL~~~~---~~~~i~~L~~~l~~~~--~~~~vr~~a 244 (500)
-...+..+|+-++. .+..+.+...|-.+...-| -.++.++|-+. ..+....|.+.+.++. ..|.+...+
T Consensus 352 aKFtatAslGvIH~gn~n~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~teDe~~~~l~yG~ 431 (926)
T COG5116 352 AKFTATASLGVIHLGNSNPGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLDTEDELTPELAYGV 431 (926)
T ss_pred hhhhhhhhceeEeeccCCchhHhhhccCCcccchhhhccCceeeeehhhccCcCcccHHHHHHHhCcccccccHHHHHHH
Confidence 44455555655442 3566777777765443222 35666776654 2344667776655432 235778888
Q ss_pred HHHHhhcCC----chHHHHHHHhhcCCcHHHHHHHHHHhhhccc--cchh----HhHHHH--hhhc-----------cCC
Q psy10052 245 AEALGAIAT----PECYDVLRKYLSDEKVVVRQSCEIALDMCDY--ENSV----ELQYAD--TLCK-----------FKM 301 (500)
Q Consensus 245 ~~aL~~~~~----~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~--~~~~----~~~~~~--~l~~-----------~~~ 301 (500)
+..+|-++. ...++.+.+++.+.....-.++...+|.+.- .... .+.++. ..++ +..
T Consensus 432 ~LGiGL~~MgSan~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~y 511 (926)
T COG5116 432 CLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILY 511 (926)
T ss_pred HhhhcchhcccccHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhh
Confidence 877775543 3468889999988888888888888886543 2222 111211 0011 111
Q ss_pred C-ChHHHHHHHHHhhcCCCCHHHHHHHHHHHH----hcCChhhHHHHHHH-hcCCCHHHHHHHHHHHhccC--CCccHHH
Q psy10052 302 I-PEEKILLIGQVLKDSSKPLKERFRALFTLK----NIGGKTAIQCISEA-FADKSALLKHELAYCLGQMK--DSDANDI 373 (500)
Q Consensus 302 ~-~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~----~~~~~~~~~~L~~~-l~~~~~~vr~~a~~aL~~l~--~~~~~~~ 373 (500)
. .+..-..+.+++.+.++ ..|+..+.+++ ..+...++..|+.. .+|.+.+||.+|+-+||..+ ++..+..
T Consensus 512 grqe~add~I~ell~d~ds--~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~ 589 (926)
T COG5116 512 GRQEMADDYINELLYDKDS--ILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVG 589 (926)
T ss_pred hhHHHHHHHHHHHhcCchH--HhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhH
Confidence 1 12222345666666654 37888888665 33445667766655 78999999999999999764 6678899
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhc----CCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCC
Q psy10052 374 LRQVLEDKSQEPMVRHEAAEALGAI----GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVD 449 (500)
Q Consensus 374 L~~~l~~~~~~~~vR~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~ 449 (500)
.+++|.+. .++.||...+-+||-. |+..++..|..+..|++..||+.|..++++|-...++..-
T Consensus 590 tvelLs~s-hN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln----------- 657 (926)
T COG5116 590 TVELLSES-HNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN----------- 657 (926)
T ss_pred HHHHhhhc-cchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC-----------
Confidence 99999765 4899999999999854 5667889999999999999999999999999765543221
Q ss_pred CCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc--CChhh
Q psy10052 450 PTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI--NSVES 492 (500)
Q Consensus 450 ~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~--g~~~~ 492 (500)
| .....+..+.++..++|++-.++..|..+.|-+ |++..
T Consensus 658 p----~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNv 698 (926)
T COG5116 658 P----NVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNV 698 (926)
T ss_pred h----hHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceE
Confidence 0 124677888888999999988999998877765 55543
No 41
>KOG1062|consensus
Probab=98.78 E-value=5.8e-06 Score=83.39 Aligned_cols=375 Identities=14% Similarity=0.138 Sum_probs=215.3
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhcCChh----hHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCC
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAIGDKS----SISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDP 150 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 150 (500)
.+=|.++ +..|.-.|+-+||.++.++ ..|.+.++++++++.||..|+.++.++-.......
T Consensus 113 knDL~s~--nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~------------- 177 (866)
T KOG1062|consen 113 KNDLNSS--NQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV------------- 177 (866)
T ss_pred HhhccCC--CeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH-------------
Confidence 3334444 5678999999999999864 45667788999999999999999988754221110
Q ss_pred CCCCCCcccHHHHHHHhcCCCcCHHHHHHH---HHHHHcCCCh------hhHHHHHhhc---------------cCCCHh
Q psy10052 151 TPPLDDVSDINKLKEILLNENEDLFMRYKA---MFKLRDINSV------ESTLALTEGL---------------SHGSSL 206 (500)
Q Consensus 151 ~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A---~~~L~~~~~~------~~i~~l~~~L---------------~~~~~~ 206 (500)
+..++...+.|.+.+.. +-.+. +.-++.++.. +.++.++..| .-++|.
T Consensus 178 ------e~f~~~~~~lL~ek~hG--VL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 178 ------EHFVIAFRKLLCEKHHG--VLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred ------HHhhHHHHHHHhhcCCc--eeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence 22345555566544433 22211 2223333211 1223333322 115678
Q ss_pred HHHHHHHHHhccCC--CCcHHH----HHHHhhccCCC----HHHHHHHHHHHhhcCCch-----HHHHHHHhhcCCcHHH
Q psy10052 207 YRHEIAFVLGQMQN--PSSIPA----LTSALEDQTQN----EMVRHECAEALGAIATPE-----CYDVLRKYLSDEKVVV 271 (500)
Q Consensus 207 vr~~a~~aL~~~~~--~~~i~~----L~~~l~~~~~~----~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~~~~~~v 271 (500)
++..+++.|+-+|. +++-+. |.+...+.+.+ ..+-.+++..+-.|.... ++..|-+++.++|.++
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNI 329 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccce
Confidence 88888887777663 333332 33334332211 234555666666555432 4666777777777777
Q ss_pred HHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChh----hHHHHHHHh
Q psy10052 272 RQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT----AIQCISEAF 347 (500)
Q Consensus 272 r~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~----~~~~L~~~l 347 (500)
|..++..|.+.-...+..+ ...-..+.+-++|++.+ .|++|++.+-.+-+.. .++-|+..|
T Consensus 330 rYvaLn~L~r~V~~d~~av-------------qrHr~tIleCL~DpD~S--IkrralELs~~lvn~~Nv~~mv~eLl~fL 394 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAV-------------QRHRSTILECLKDPDVS--IKRRALELSYALVNESNVRVMVKELLEFL 394 (866)
T ss_pred eeeehhhHHhhhcCCcHHH-------------HHHHHHHHHHhcCCcHH--HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 7777777765433322111 11223677888888854 6888888777665533 455677778
Q ss_pred cCCCHHHHHHHHHHHhcc----CCCc--cHHHHHHHhhcCCCCHHHHHHHHHHHhhc-----CCc--cHHHHHHHhh---
Q psy10052 348 ADKSALLKHELAYCLGQM----KDSD--ANDILRQVLEDKSQEPMVRHEAAEALGAI-----GDK--SSISILEKYA--- 411 (500)
Q Consensus 348 ~~~~~~vr~~a~~aL~~l----~~~~--~~~~L~~~l~~~~~~~~vR~~a~~aL~~~-----~~~--~~~~~L~~~l--- 411 (500)
...++++|...+..+..+ .+.. .++.+.+++... -.-|+..++-.+-++ +.. .....|...+
T Consensus 395 ~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a--G~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~ 472 (866)
T KOG1062|consen 395 ESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA--GDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSED 472 (866)
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc--ccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhh
Confidence 877888887766655544 3322 355566665543 233444443333322 111 1111121111
Q ss_pred ---cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 412 ---QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 412 ---~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
.-..+.+.+.|.|+||..+..--... +..+|.-. -....+..|.+++..-..+...+.-|..||-++-
T Consensus 473 ~~~~is~e~l~qVa~W~IGEYGdlll~~~--------~~~~p~~v-tesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 473 TLLDISQEPLLQVASWCIGEYGDLLLDGA--------NEEEPIKV-TESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred hhhhhhhhhHHHHHHHHhhhhhHHhhcCc--------cccCCCcC-CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 12345668889999999885321110 00122211 2358899999999877778889999999999983
Q ss_pred -----ChhhHHHhhc
Q psy10052 489 -----SVESTLALTE 498 (500)
Q Consensus 489 -----~~~~~~~l~~ 498 (500)
..|.|..||.
T Consensus 544 sr~~s~~~ri~~lI~ 558 (866)
T KOG1062|consen 544 SRFHSSSERIKQLIS 558 (866)
T ss_pred hhccccHHHHHHHHH
Confidence 3566666653
No 42
>KOG2259|consensus
Probab=98.77 E-value=1.1e-06 Score=86.34 Aligned_cols=226 Identities=16% Similarity=0.106 Sum_probs=134.9
Q ss_pred HHhhccCCCHhHHHHHHHHHhccCC-----CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC----------------c
Q psy10052 196 LTEGLSHGSSLYRHEIAFVLGQMQN-----PSSIPALTSALEDQTQNEMVRHECAEALGAIAT----------------P 254 (500)
Q Consensus 196 l~~~L~~~~~~vr~~a~~aL~~~~~-----~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------------~ 254 (500)
+..+..+.++.||..|+..+-.+++ ........+.+.| .+..||.+|+..+..++. .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD--~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D 280 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSD--DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD 280 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH
Confidence 5555566777788777777655543 1234445566666 345678777666643331 1
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhc-cCC------CChHHHHHHHHHhhcCC--------C
Q psy10052 255 ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCK-FKM------IPEEKILLIGQVLKDSS--------K 319 (500)
Q Consensus 255 ~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~-~~~------~~~~~~~~l~~~l~~~~--------~ 319 (500)
.++..+...++|-++.||-.|..+||.+..-...-. -.+|.+ +.. .....-..+..-..|+. +
T Consensus 281 ~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i--~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advp 358 (823)
T KOG2259|consen 281 AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII--QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVP 358 (823)
T ss_pred HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH--HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCc
Confidence 346667777888888888888888876543221100 001100 000 00000000100000000 0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC--C----ccHHHHHHHhhcCCCCHHHHHHHHH
Q psy10052 320 PLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD--S----DANDILRQVLEDKSQEPMVRHEAAE 393 (500)
Q Consensus 320 ~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~--~----~~~~~L~~~l~~~~~~~~vR~~a~~ 393 (500)
+...-..+. .+-...+...++..|+|+-.+||.+|+.++..+.. | .++..|+++++|. ...||..|+.
T Consensus 359 see~d~~~~----siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE--~~~VRL~ai~ 432 (823)
T KOG2259|consen 359 SEEDDEEEE----SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDE--IEVVRLKAIF 432 (823)
T ss_pred hhhcccccc----ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 000000000 00011234577788889999999999999998865 2 3688999999886 7899999999
Q ss_pred HHhhcC-----CccHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 394 ALGAIG-----DKSSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 394 aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
+|..|. .++.++.+...+.|.+++||.+...-|....-
T Consensus 433 aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 433 ALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred HHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 998775 35778999999999999999988887777653
No 43
>KOG1242|consensus
Probab=98.77 E-value=1.3e-05 Score=79.18 Aligned_cols=386 Identities=20% Similarity=0.171 Sum_probs=222.6
Q ss_pred cCCCHHHHHHHHHHHHcc---CCCccHHHHHH----HhhccCCCHHHHHHHHHHHHhc------CCh---hhHHHHHHHh
Q psy10052 48 ADESALLKHELAYCLGQM---KDSDANDILRQ----VLEDKSQEPMVRHEAAEALGAI------GDK---SSISILEKYA 111 (500)
Q Consensus 48 ~~~~~~vR~~a~~~L~~~---~~~~~~~~L~~----~L~~~~~d~~vr~~a~~aL~~~------~~~---~~~~~L~~~l 111 (500)
+|+.+.+|..-+.+.... .....+..|.+ .|.+.. +..+|...+-.-|.. .++ ..+..+..-+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-NDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch-hHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence 466667776655543322 12222333333 333332 344555555444432 222 3455566667
Q ss_pred cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC---
Q psy10052 112 QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN--- 188 (500)
Q Consensus 112 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~--- 188 (500)
..|.+.||.+...+|..+.+....... ....+.+.+.+. ..+...|..+...+..+-
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~~------------------~~~l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLSG------------------EYVLELLLELLT--STKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccCH------------------HHHHHHHHHHhc--cccHHHHhhhhHHHHHHHcCc
Confidence 888899998888888776654333221 334556666664 233445666665554432
Q ss_pred ------ChhhHHHHHhhccCCCHhHHHH-H-------HHHHhccCCCCcHHHHHHHhhcc-CCCHHHHHHHHHHHhhcC-
Q psy10052 189 ------SVESTLALTEGLSHGSSLYRHE-I-------AFVLGQMQNPSSIPALTSALEDQ-TQNEMVRHECAEALGAIA- 252 (500)
Q Consensus 189 ------~~~~i~~l~~~L~~~~~~vr~~-a-------~~aL~~~~~~~~i~~L~~~l~~~-~~~~~vr~~a~~aL~~~~- 252 (500)
....+..+.++..+..+..+++ + ...||....|..++.+-.++... +..+.||.+|..+.-.+-
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2356777777777765544442 2 22334444555454444444321 245789998887764332
Q ss_pred ------CchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHH
Q psy10052 253 ------TPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFR 326 (500)
Q Consensus 253 ------~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~ 326 (500)
-...++.+...+.+..|.-..++++.+|.+.+..+....+ . -...+|.+.+.+-|.++ .+|..
T Consensus 246 ~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~--~-------lp~iiP~lsevl~DT~~--evr~a 314 (569)
T KOG1242|consen 246 CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL--C-------LPDLIPVLSEVLWDTKP--EVRKA 314 (569)
T ss_pred hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH--H-------HhHhhHHHHHHHccCCH--HHHHH
Confidence 2334565555555558888899999998666554432211 1 12346778888888775 48999
Q ss_pred HHHHHHhcCC-------hhhHHHHHHHhcCCCHHHHHHHHHHHhccCC-----Cc----cHHHHHHHhhcCCCCHHHHHH
Q psy10052 327 ALFTLKNIGG-------KTAIQCISEAFADKSALLKHELAYCLGQMKD-----SD----ANDILRQVLEDKSQEPMVRHE 390 (500)
Q Consensus 327 a~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~-----~~----~~~~L~~~l~~~~~~~~vR~~ 390 (500)
+..++.+.+. ...+|.|++.+.++...+. .++..|+.-.. +. .+|.|.+-+.+. +...+..
T Consensus 315 ~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR--st~~kr~ 391 (569)
T KOG1242|consen 315 GIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALMVPILKRGLAER--STSIKRK 391 (569)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc--cchhhhh
Confidence 9998887764 2356778888887764442 34455544322 22 356666666666 5777788
Q ss_pred HHHHHhhcC----C--------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchh
Q psy10052 391 AAEALGAIG----D--------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVS 458 (500)
Q Consensus 391 a~~aL~~~~----~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (500)
++...+++. + +..+|.|...+.|+.|+||..+.++|+.+-........ ..
T Consensus 392 t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f------------------~d 453 (569)
T KOG1242|consen 392 TAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF------------------DD 453 (569)
T ss_pred HHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc------------------cc
Confidence 888887753 2 24556667777789999999999999877554332111 13
Q ss_pred hHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 459 DINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 459 ~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
.++.+.+.+.+ ......|..++..|+..
T Consensus 454 ~~p~l~e~~~~-~k~~~~~~g~aq~l~ev 481 (569)
T KOG1242|consen 454 LIPELSETLTS-EKSLVDRSGAAQDLSEV 481 (569)
T ss_pred cccHHHHhhcc-chhhhhhHHHhhhHHHH
Confidence 44555555542 23335566666655544
No 44
>KOG1242|consensus
Probab=98.73 E-value=2.6e-06 Score=83.85 Aligned_cols=384 Identities=17% Similarity=0.132 Sum_probs=225.2
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-------CcchHHHHHHHccCCCHHHHHHHHHHHHccCC---------Cc
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIG-------GKTAIQCISEAFADESALLKHELAYCLGQMKD---------SD 69 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~-------~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~---------~~ 69 (500)
-++.|.+.|..|... +|......|..+. .....+.+.++++..+-.-|..+.+.++.+-. ..
T Consensus 97 ~~~~~~~~~~tps~~--~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 97 IIEILLEELDTPSKS--VQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred HHHHHHHhcCCCcHH--HHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh
Confidence 456778888888875 7776666665543 23466677788888888888888888876521 34
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHH----HhcC---Ch---hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEAL----GAIG---DK---SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL----~~~~---~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
.+..|.+.+.|.+ ....|+.+.-+. +.+| .+ ..+|.++....|..+.||.+|..+...+.........
T Consensus 175 ~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV- 252 (569)
T KOG1242|consen 175 FLDNLSKAIIDKK-SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV- 252 (569)
T ss_pred HHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-
Confidence 5677788888874 333343222221 2233 23 3456666677899999999999988776542211100
Q ss_pred cccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC----------hhhHHHHHhhccCCCHhHHH
Q psy10052 140 DTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS----------VESTLALTEGLSHGSSLYRH 209 (500)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~----------~~~i~~l~~~L~~~~~~vr~ 209 (500)
...++.++..+.+. .+.....+++.++.... +..++.+.+.|.|..+.||.
T Consensus 253 -----------------K~llpsll~~l~~~--kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~ 313 (569)
T KOG1242|consen 253 -----------------KLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRK 313 (569)
T ss_pred -----------------hHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHH
Confidence 23355666655332 34456677777765432 36788888888999999999
Q ss_pred HHHHHHhccCC----C---CcHHHHHHHhhccCCCHHHHHHHHHHHhhcC-----Cch----HHHHHHHhhcCCcHHHHH
Q psy10052 210 EIAFVLGQMQN----P---SSIPALTSALEDQTQNEMVRHECAEALGAIA-----TPE----CYDVLRKYLSDEKVVVRQ 273 (500)
Q Consensus 210 ~a~~aL~~~~~----~---~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----~~~----~~~~L~~~l~~~~~~vr~ 273 (500)
++..++.+++. + ..+|.|++++.|++. --..+...|+... ++. .+|.|.+.+.+.+...++
T Consensus 314 a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~---~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 314 AGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC---YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc---chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhh
Confidence 99999877762 2 357778888877531 2335566665432 122 367777777777777778
Q ss_pred HHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc-------CChhhHHHHHHH
Q psy10052 274 SCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNI-------GGKTAIQCISEA 346 (500)
Q Consensus 274 ~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~-------~~~~~~~~L~~~ 346 (500)
.++...+.+...-......+..+ ..-+|.+...+.+..| .+|..+.++|+.+ +.+...|.+...
T Consensus 391 ~t~~IidNm~~LveDp~~lapfl-------~~Llp~lk~~~~d~~P--EvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKDLAPFL-------PSLLPGLKENLDDAVP--EVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred hHHHHHHHHHHhhcCHHHHhhhH-------HHHhhHHHHHhcCCCh--hHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 77777776553322111111111 1234566666777744 3788888888533 124556677776
Q ss_pred hcCCCHH-HHHHHHH----HHhccCCCcc---HHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHH
Q psy10052 347 FADKSAL-LKHELAY----CLGQMKDSDA---NDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILE 408 (500)
Q Consensus 347 l~~~~~~-vr~~a~~----aL~~l~~~~~---~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~ 408 (500)
+.+.... -|..+.. .++.++.+.. .+.+.........+|.+|..-++-+.-++. -+.++.+.
T Consensus 462 ~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~ 541 (569)
T KOG1242|consen 462 LTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFL 541 (569)
T ss_pred hccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHH
Confidence 6544222 2333443 3444444433 333333333333345566655555544332 13444445
Q ss_pred HhhcCCCHhHHHHHHH
Q psy10052 409 KYAQDPVKEVSETCYL 424 (500)
Q Consensus 409 ~~l~d~~~~vr~~A~~ 424 (500)
+.+.|.++.++..+..
T Consensus 542 k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 542 KGLADNDEKGRDTALE 557 (569)
T ss_pred HHhhhcCCccccchhh
Confidence 5555556555555443
No 45
>KOG1824|consensus
Probab=98.65 E-value=6.5e-05 Score=77.23 Aligned_cols=436 Identities=17% Similarity=0.099 Sum_probs=231.0
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcC-----------CcchHHHHHHHccCCCHHHHHHHHHHHHccCC----------
Q psy10052 9 LIGQVLKDSSKPLKERFRALFTLKNIG-----------GKTAIQCISEAFADESALLKHELAYCLGQMKD---------- 67 (500)
Q Consensus 9 ~L~~~L~~~~~~~~~R~~A~~~L~~~~-----------~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~---------- 67 (500)
.|.+.+.++|.+ .|++|..-|...- ....+..|+++|+|.++.|+..|+++||-+..
T Consensus 9 ~LlekmtssDKD--fRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKD--FRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI 86 (1233)
T ss_pred HHHHHccCCCcc--hhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 788899999998 9999987776532 23578889999999999999999999994311
Q ss_pred ---------------------------------------Ccc----HHHHHHHhhccCCCHHHHHHHHHHHHhc----CC
Q psy10052 68 ---------------------------------------SDA----NDILRQVLEDKSQEPMVRHEAAEALGAI----GD 100 (500)
Q Consensus 68 ---------------------------------------~~~----~~~L~~~L~~~~~d~~vr~~a~~aL~~~----~~ 100 (500)
+.. .+.|...+....+...++..++..++.. |.
T Consensus 87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 011 1222222222111334666665555442 22
Q ss_pred --hhhHH----HHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCH
Q psy10052 101 --KSSIS----ILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL 174 (500)
Q Consensus 101 --~~~~~----~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~ 174 (500)
++... .++.-+..+-..||..|+.+|+.+......... ...+..|.+-|....+..
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly------------------~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY------------------VELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhccCCCCchH
Confidence 12223 333344667788999999999887643322111 234566666665554444
Q ss_pred HHHHHHHHHHHcC----------CChhhHHHHHhhc---cCCCHhHHHHHHHHHhccC---C-------CCcHHHHHHHh
Q psy10052 175 FMRYKAMFKLRDI----------NSVESTLALTEGL---SHGSSLYRHEIAFVLGQMQ---N-------PSSIPALTSAL 231 (500)
Q Consensus 175 ~~r~~A~~~L~~~----------~~~~~i~~l~~~L---~~~~~~vr~~a~~aL~~~~---~-------~~~i~~L~~~l 231 (500)
.+|. -+++|+.+ +.+..++.+.... ...+.++|...+++++.+- . ++.+..+++.+
T Consensus 229 ~~rt-~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yi 307 (1233)
T KOG1824|consen 229 ATRT-YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYI 307 (1233)
T ss_pred HHHH-HHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHh
Confidence 4443 23333322 1235677777777 4567788888777776432 1 12222222322
Q ss_pred h-ccC-------------------------------CCHHHHHHHHHHHhhcCC--chH--------HHHHHHhhcCCcH
Q psy10052 232 E-DQT-------------------------------QNEMVRHECAEALGAIAT--PEC--------YDVLRKYLSDEKV 269 (500)
Q Consensus 232 ~-~~~-------------------------------~~~~vr~~a~~aL~~~~~--~~~--------~~~L~~~l~~~~~ 269 (500)
. |++ -.|.||++|+.++..+-. .+. -|.++.-+++...
T Consensus 308 sYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREE 387 (1233)
T KOG1824|consen 308 SYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREE 387 (1233)
T ss_pred ccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhh
Confidence 2 110 125677777776643321 111 2333333444445
Q ss_pred HHHHHHHHHhhhccccchhHhHHHHh---hhc---------cCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC--
Q psy10052 270 VVRQSCEIALDMCDYENSVELQYADT---LCK---------FKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG-- 335 (500)
Q Consensus 270 ~vr~~a~~al~~l~~~~~~~~~~~~~---l~~---------~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~-- 335 (500)
.|+...+.+.-.+-....+....... -.. +......-+..+.+.+++.. ...|..++..|...-
T Consensus 388 nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks--~kt~~~cf~lL~eli~~ 465 (1233)
T KOG1824|consen 388 NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKS--VKTRQGCFLLLTELINV 465 (1233)
T ss_pred hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhcc--ccchhhHHHHHHHHHHh
Confidence 55554444432111111100000000 000 00001112334444455333 224555655554331
Q ss_pred --------ChhhHHHHHHHhcCCCH--HHHHHHHH----HHhccCCC-------ccHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10052 336 --------GKTAIQCISEAFADKSA--LLKHELAY----CLGQMKDS-------DANDILRQVLEDKSQEPMVRHEAAEA 394 (500)
Q Consensus 336 --------~~~~~~~L~~~l~~~~~--~vr~~a~~----aL~~l~~~-------~~~~~L~~~l~~~~~~~~vR~~a~~a 394 (500)
-+..++.++..|.|.+. ..+..+.- +|...+.+ ...+.+.....++ -+.+-.+|+..
T Consensus 466 lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~--fyKisaEAL~v 543 (1233)
T KOG1824|consen 466 LPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDP--FYKISAEALLV 543 (1233)
T ss_pred CcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCc--hHhhhHHHHHH
Confidence 13456777777877643 34444332 23332222 1345555666665 67888888877
Q ss_pred HhhcC-------C-------c---cHHHHHHHhh--cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCC
Q psy10052 395 LGAIG-------D-------K---SSISILEKYA--QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLD 455 (500)
Q Consensus 395 L~~~~-------~-------~---~~~~~L~~~l--~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (500)
.+++- . + .......+.+ +|.|.+||..|..+++++-..-..-... .
T Consensus 544 ~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~---------------e 608 (1233)
T KOG1824|consen 544 CQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN---------------E 608 (1233)
T ss_pred HHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh---------------h
Confidence 76641 1 1 1222333333 6889999999999999986543211100 2
Q ss_pred chhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 456 DVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 456 ~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
.+..++.+.+-|. + ...|..|+.|+.-|.
T Consensus 609 L~~~L~il~eRl~--n--EiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 609 LPRTLPILLERLG--N--EITRLTAVKALTLIA 637 (1233)
T ss_pred hHHHHHHHHHHHh--c--hhHHHHHHHHHHHHH
Confidence 2456666666664 2 258999999998873
No 46
>KOG0211|consensus
Probab=98.63 E-value=1.9e-05 Score=82.00 Aligned_cols=222 Identities=18% Similarity=0.185 Sum_probs=124.7
Q ss_pred HHHHHhhccCCCHhHHHHHHHHHhccC----C----CCcHHHHHHHhhccCCCHHHHHHHHHHHhhc-------C----C
Q psy10052 193 TLALTEGLSHGSSLYRHEIAFVLGQMQ----N----PSSIPALTSALEDQTQNEMVRHECAEALGAI-------A----T 253 (500)
Q Consensus 193 i~~l~~~L~~~~~~vr~~a~~aL~~~~----~----~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~-------~----~ 253 (500)
++.+..+..+.+..||.+.+..+..+. . ....|.++..+++ +++.||....+.+... | .
T Consensus 400 lp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~d--e~~~V~lnli~~ls~~~~v~~v~g~~~~s 477 (759)
T KOG0211|consen 400 LPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKD--EDPIVRLNLIDKLSLLEEVNDVIGISTVS 477 (759)
T ss_pred hHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcch--hhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence 455555555666666665555443321 1 2334555555555 4567777666433211 1 1
Q ss_pred chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHH-
Q psy10052 254 PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLK- 332 (500)
Q Consensus 254 ~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~- 332 (500)
...+|.+.++..+..|.+|.+..+.+-.+.......+ . .+...+.+...+.+. -..+|.+|...+.
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~--~---------~~~~~~l~~~~l~d~--v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF--F---------DEKLAELLRTWLPDH--VYSIREAAARNLPA 544 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH--h---------hHHHHHHHHhhhhhh--HHHHHHHHHHHhHH
Confidence 2346677777777777777777776653321111000 0 000001111111111 1235555555443
Q ss_pred ---hcCC----hhhHHHHHHHhcCCCHHHHHHHHHHHhccC----C----CccHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q psy10052 333 ---NIGG----KTAIQCISEAFADKSALLKHELAYCLGQMK----D----SDANDILRQVLEDKSQEPMVRHEAAEALGA 397 (500)
Q Consensus 333 ---~~~~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~----~----~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~ 397 (500)
..|. ...++.++....++++.+|...+.++..+. . ....+.+..+..|+ .++||..++..|-.
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPK 622 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHH
Confidence 2221 234555555555667888887777765442 2 23567777888777 78999999999988
Q ss_pred cCC--------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 398 IGD--------KSSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 398 ~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
+.. ..+.+.+..+..|++..||..|..+++.+.-
T Consensus 623 i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 623 ILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 753 3566777777789999999999998887754
No 47
>KOG1059|consensus
Probab=98.62 E-value=3.1e-05 Score=77.29 Aligned_cols=196 Identities=12% Similarity=0.126 Sum_probs=123.1
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcC--C----cchHHHHHHHccCCCHHHHHHHHHHHHccCC------CccHHHHH
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIG--G----KTAIQCISEAFADESALLKHELAYCLGQMKD------SDANDILR 75 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~--~----~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~------~~~~~~L~ 75 (500)
+.+..+|.+.-+. +|..|+..|.+.- . ..+++.|.+-|+|+||.|..+|+-.+.++.. -...|.+.
T Consensus 147 ~Dv~tLL~sskpY--vRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ff 224 (877)
T KOG1059|consen 147 DDVFTLLNSSKPY--VRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFY 224 (877)
T ss_pred HHHHHHHhcCchH--HHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHH
Confidence 4456677777665 8888888887732 1 2467788888888888888888888776632 23457788
Q ss_pred HHhhccCCCHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCC-HHHHHHHHHHHHHh--chhccchhhccccCcCC
Q psy10052 76 QVLEDKSQEPMVRHEAAEALGAIGD------KSSISILEKYAQDPV-KEVSETCYLALKRI--QFVTEEDKQKDTGNIYG 146 (500)
Q Consensus 76 ~~L~~~~~d~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~--~~~~~~~~~~~~~~~~~ 146 (500)
++|.+.. +.++-...+...|.+.. ...++.|..++.... -.+-..|+.+.-.. .... .+++
T Consensus 225 kllttSs-NNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~--------~d~~- 294 (877)
T KOG1059|consen 225 KLLVTSS-NNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM--------SDHS- 294 (877)
T ss_pred HHHhccC-CCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC--------CCcH-
Confidence 8887775 45666666777766542 245677777765544 23444555444322 1000 0000
Q ss_pred CCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh--h----hHHHHHhhccCCCHhHHHHHHHHHhccCC
Q psy10052 147 SVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV--E----STLALTEGLSHGSSLYRHEIAFVLGQMQN 220 (500)
Q Consensus 147 ~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~--~----~i~~l~~~L~~~~~~vr~~a~~aL~~~~~ 220 (500)
..+ .-.+..|..++.|++++ .++.++.+++.+... . .-+.+++.|.|.++.+|..|+..+..+-+
T Consensus 295 -----asi--qLCvqKLr~fiedsDqN--LKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 295 -----ASI--QLCVQKLRIFIEDSDQN--LKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred -----HHH--HHHHHHHhhhhhcCCcc--HHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 000 22467777788766655 688888887776542 2 33567788888888899888888866655
Q ss_pred CCcH
Q psy10052 221 PSSI 224 (500)
Q Consensus 221 ~~~i 224 (500)
.+-+
T Consensus 366 kkNl 369 (877)
T KOG1059|consen 366 KKNL 369 (877)
T ss_pred hhhH
Confidence 4433
No 48
>KOG1824|consensus
Probab=98.58 E-value=0.0002 Score=73.78 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=124.4
Q ss_pred CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHH
Q psy10052 222 SSIPALTSALEDQTQNEMVRHECAEALGAIATP-------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYAD 294 (500)
Q Consensus 222 ~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~ 294 (500)
.....|..-+..+..+..++.-|.-.+|.+|.. +....+.+.+++++..|+.+|..|||.+..++.+.+- ..
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yL-pf 895 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYL-PF 895 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHH-HH
Confidence 344455555554445667899999999998853 3456778899999999999999999988876654310 00
Q ss_pred hhhccCCCChH---HHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccC---CC
Q psy10052 295 TLCKFKMIPEE---KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMK---DS 368 (500)
Q Consensus 295 ~l~~~~~~~~~---~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~---~~ 368 (500)
.+..+...... -+-.+.+++.+...+ .- +...+.....|.+..+.....+|--.+++||.+. +.
T Consensus 896 il~qi~sqpk~QyLLLhSlkevi~~~svd--~~--------~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe 965 (1233)
T KOG1824|consen 896 ILEQIESQPKRQYLLLHSLKEVIVSASVD--GL--------KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE 965 (1233)
T ss_pred HHHHHhcchHhHHHHHHHHHHHHHHhccc--hh--------hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH
Confidence 01111110000 011222222222211 00 0011234556666777777888999999999875 33
Q ss_pred ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--c--------cHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 369 DANDILRQVLEDKSQEPMVRHEAAEALGAIGD--K--------SSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 369 ~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--~--------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
...|.|...+..+ .+..|..++.+.-..-. + ..+.-+..+++|+|..||..|..++.....
T Consensus 966 sLlpkL~~~~~S~--a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 966 SLLPKLKLLLRSE--ASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHHHHHHHHhcCC--CcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHc
Confidence 4688888888765 78899988888754321 1 344556677799999999999998876544
No 49
>KOG2259|consensus
Probab=98.56 E-value=6.8e-07 Score=87.85 Aligned_cols=254 Identities=19% Similarity=0.159 Sum_probs=165.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy10052 105 SILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKL 184 (500)
Q Consensus 105 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L 184 (500)
.-|..+..|.|..||.+|+.+|-.++...... ...+....+.+.|+.. .+|.+|++.+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~--------------------~~~Y~~A~~~lsD~~e--~VR~aAvqlv 258 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS--------------------KACYSRAVKHLSDDYE--DVRKAAVQLV 258 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccccc--------------------HHHHHHHHHHhcchHH--HHHHHHHHHH
Confidence 33777789999999999999998887532221 2246777888866544 4899997765
Q ss_pred HcCCC----------------hhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHH------
Q psy10052 185 RDINS----------------VESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRH------ 242 (500)
Q Consensus 185 ~~~~~----------------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~------ 242 (500)
.-++. ..++..+...+.|-+..||..|+++||.+..-. -..+.+.|... .-...|+
T Consensus 259 ~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdKK-lms~lRRkr~ahk 336 (823)
T KOG2259|consen 259 SVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDKK-LMSRLRRKRTAHK 336 (823)
T ss_pred HHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHHH-Hhhhhhhhhhccc
Confidence 44321 146677788888999999999999999887421 12223333211 0000111
Q ss_pred --HHHHHHhhcCC----------------------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhc
Q psy10052 243 --ECAEALGAIAT----------------------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCK 298 (500)
Q Consensus 243 --~a~~aL~~~~~----------------------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~ 298 (500)
....+=|.+.. .++-..++-.++|+...||.+|+.+++.+....+.
T Consensus 337 rpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---------- 406 (823)
T KOG2259|consen 337 RPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---------- 406 (823)
T ss_pred chHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----------
Confidence 11111121111 12345666778888889999999999876543221
Q ss_pred cCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCc----
Q psy10052 299 FKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----KTAIQCISEAFADKSALLKHELAYCLGQMKDSD---- 369 (500)
Q Consensus 299 ~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~---- 369 (500)
.....+..|..+++|+.. .+|..|+.+|..+.. ++.++.+...|.|.+.++|.+.-..|+...-++
T Consensus 407 ---FA~~aldfLvDMfNDE~~--~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i 481 (823)
T KOG2259|consen 407 ---FAVRALDFLVDMFNDEIE--VVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECI 481 (823)
T ss_pred ---cHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Confidence 123345678888887763 489999998887653 566788889999999999998888887766543
Q ss_pred --cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC
Q psy10052 370 --ANDILRQVLEDKSQEPMVRHEAAEALGAIGD 400 (500)
Q Consensus 370 --~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~ 400 (500)
.+..|++.+... |.=|-....++++||.
T Consensus 482 ~m~v~~lL~~L~ky---PqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 482 DMCVAHLLKNLGKY---PQDRDEILRCMGRIGQ 511 (823)
T ss_pred HHHHHHHHHHhhhC---CCCcHHHHHHHHHHhc
Confidence 455666666543 4446677777777764
No 50
>KOG0213|consensus
Probab=98.55 E-value=0.00049 Score=69.26 Aligned_cols=390 Identities=14% Similarity=0.135 Sum_probs=192.4
Q ss_pred hcCCCCCHHHHHHHHHHHHhcC----C------cchHHHHHHHccCCCHHHHHHHHHHHHcc---CCCccH---HHHHHH
Q psy10052 14 LKDSSKPLKERFRALFTLKNIG----G------KTAIQCISEAFADESALLKHELAYCLGQM---KDSDAN---DILRQV 77 (500)
Q Consensus 14 L~~~~~~~~~R~~A~~~L~~~~----~------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~---~~~~~~---~~L~~~ 77 (500)
+......|.-|...++...+++ . ...++.+...|+|.+-.||.-++.+|+.+ ..+..+ ..+.+.
T Consensus 519 vc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkp 598 (1172)
T KOG0213|consen 519 VCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKP 598 (1172)
T ss_pred HhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3333334679999888887764 1 23455555677888889998766666544 333333 333333
Q ss_pred hhcc-CC-CHHHHHHHHHHHHhcCC---h--------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCc
Q psy10052 78 LEDK-SQ-EPMVRHEAAEALGAIGD---K--------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNI 144 (500)
Q Consensus 78 L~~~-~~-d~~vr~~a~~aL~~~~~---~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~ 144 (500)
|... .+ -...-.+-+.++|.+.. + +.+-.+.+-...||.+........+.+++......+.
T Consensus 599 Lwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~------ 672 (1172)
T KOG0213|consen 599 LWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPA------ 672 (1172)
T ss_pred HHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHH------
Confidence 3322 00 11233334455555432 1 1222334445788888888888888887754333221
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhc------CCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHH----
Q psy10052 145 YGSVDPTPPLDDVSDINKLKEILL------NENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFV---- 214 (500)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~L~~~l~------d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~a---- 214 (500)
|.. .+.++.+...+- |.-....+-..++....+.|..+.+..++.-++|+++..|...+..
T Consensus 673 y~r---------~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri 743 (1172)
T KOG0213|consen 673 YIR---------FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRI 743 (1172)
T ss_pred HHh---------hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 110 111222222110 0000111122345556678888888888888889888777765554
Q ss_pred HhccCCCCc--------HHHHHHHhhc-cCCCH---HHHHHHHHHHhhcC---CchHHHHHHHhhcCCcHHHHHHHHHHh
Q psy10052 215 LGQMQNPSS--------IPALTSALED-QTQNE---MVRHECAEALGAIA---TPECYDVLRKYLSDEKVVVRQSCEIAL 279 (500)
Q Consensus 215 L~~~~~~~~--------i~~L~~~l~~-~~~~~---~vr~~a~~aL~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~al 279 (500)
++.++..++ +..+.-.++. +.++. ...-....+|+.-. .+..+..+...|+++.+.||+.++..+
T Consensus 744 ~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadli 823 (1172)
T KOG0213|consen 744 VGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLI 823 (1172)
T ss_pred HhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 355554332 2333333332 22222 12233344444321 134556667789999999999998888
Q ss_pred hhccccc--hhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCH-HHHHHHHHHHHhcC--------ChhhHHHHHHHhc
Q psy10052 280 DMCDYEN--SVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPL-KERFRALFTLKNIG--------GKTAIQCISEAFA 348 (500)
Q Consensus 280 ~~l~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~r~~a~~~L~~~~--------~~~~~~~L~~~l~ 348 (500)
+.+..-- ....+....+|. .|-+.+...++.+ .--..|+.++.+.. ..+.+|.|...|+
T Consensus 824 s~la~Vlktc~ee~~m~~lGv----------vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 824 SSLAKVLKTCGEEKLMGHLGV----------VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred HHHHHHHHhccHHHHHHHhhH----------HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence 7553211 111111111110 1112222222211 11222333222211 1234555566666
Q ss_pred CCCHHHHHHHHHHHhccCCCc-----------cHHHHHHHhhcCCCCHHHHHHHHHHHhhc----CCccHHHHHHHhhcC
Q psy10052 349 DKSALLKHELAYCLGQMKDSD-----------ANDILRQVLEDKSQEPMVRHEAAEALGAI----GDKSSISILEKYAQD 413 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~~~~-----------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~----~~~~~~~~L~~~l~d 413 (500)
+.+..|..+.+..+|.+++.. +.=.|+++|..- .-.+|.+|+..+|.| |..+++..|..-|+.
T Consensus 894 nrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah--kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkv 971 (1172)
T KOG0213|consen 894 NRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH--KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKV 971 (1172)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchH
Confidence 666666666666666655421 112244444433 356666666666654 334455555555544
Q ss_pred CCHhHHHHHHHHHHHhh
Q psy10052 414 PVKEVSETCYLALKRIQ 430 (500)
Q Consensus 414 ~~~~vr~~A~~aL~~l~ 430 (500)
.+...|.....+++-.+
T Consensus 972 qeRq~RvcTtvaIaIVa 988 (1172)
T KOG0213|consen 972 QERQNRVCTTVAIAIVA 988 (1172)
T ss_pred HHHHhchhhhhhhhhhh
Confidence 44555544444444443
No 51
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.53 E-value=0.00029 Score=73.12 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=87.7
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHccC----------CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC----------C
Q psy10052 41 QCISEAFADESALLKHELAYCLGQMK----------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG----------D 100 (500)
Q Consensus 41 ~~L~~~l~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~----------~ 100 (500)
+.+..+++..+..+| .+.+.|..+. ....++.|+++|+.+ +..+...++..|.++. .
T Consensus 253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~--n~ellil~v~fLkkLSi~~ENK~~m~~ 329 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE--NEELLILAVTFLKKLSIFKENKDEMAE 329 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444455555555 4556666553 256789999999887 7889998999988765 2
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHH
Q psy10052 101 KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 180 (500)
Q Consensus 101 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A 180 (500)
.+.++.|.+++..++..++..+...|.++..+...... +...+.+|.|+.++.+++ .+..+
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~---------------mV~~GlIPkLv~LL~d~~----~~~va 390 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ---------------MVSLGLIPKLVELLKDPN----FREVA 390 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH---------------HHHCCCcHHHHHHhCCCc----hHHHH
Confidence 36889999999999999999999999999865543321 001346899999996542 35556
Q ss_pred HHHHHcCC
Q psy10052 181 MFKLRDIN 188 (500)
Q Consensus 181 ~~~L~~~~ 188 (500)
+..|.++.
T Consensus 391 l~iLy~LS 398 (708)
T PF05804_consen 391 LKILYNLS 398 (708)
T ss_pred HHHHHHhc
Confidence 66665544
No 52
>KOG1061|consensus
Probab=98.51 E-value=2.4e-05 Score=79.01 Aligned_cols=384 Identities=15% Similarity=0.139 Sum_probs=196.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCc----chHHHHHHHccCCCHHHHHHHHHHHHccCC--------CccHHHH
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGGK----TAIQCISEAFADESALLKHELAYCLGQMKD--------SDANDIL 74 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~----~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--------~~~~~~L 74 (500)
+..+.+--.+++ |.+|..|++.++.++.+ ....+|.++++|.++++|..++.....+.+ ...++.|
T Consensus 88 vnt~~kD~~d~n--p~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L 165 (734)
T KOG1061|consen 88 VNTFLKDCEDPN--PLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDAL 165 (734)
T ss_pred hhhhhccCCCCC--HHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHH
Confidence 333444444554 45888888888877643 355667777788888888888887776643 3456777
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccC
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGN 143 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~ 143 (500)
..++.|+ +|.|...|+.+|..|... ..+..++..++.-+..-+......+.+.......+.
T Consensus 166 ~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea------ 237 (734)
T KOG1061|consen 166 KDLLSDS--NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREA------ 237 (734)
T ss_pred HHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhH------
Confidence 7777776 788888888888776421 234445555555555556666666655433221111
Q ss_pred cCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcC---CC-------hhhHHHHHhhccCCCHhHHHHHHH
Q psy10052 144 IYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI---NS-------VESTLALTEGLSHGSSLYRHEIAF 213 (500)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~---~~-------~~~i~~l~~~L~~~~~~vr~~a~~ 213 (500)
......+...+.. .+..+...++..+... .. .+..+.+..++..++ .+..-++.
T Consensus 238 -------------~~i~~r~~p~Lqh--~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLr 301 (734)
T KOG1061|consen 238 -------------EDICERLTPRLQH--ANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALR 301 (734)
T ss_pred -------------HHHHHHhhhhhcc--CCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHh
Confidence 1122222233321 1111222222221110 00 012233333443333 55555554
Q ss_pred HHhccC--CCCcHHHHHH-HhhccCCCHHHHHHHHHHHhhcCCch----HHHHHHHhhcCCcHHHHHHHHHHhhhccccc
Q psy10052 214 VLGQMQ--NPSSIPALTS-ALEDQTQNEMVRHECAEALGAIATPE----CYDVLRKYLSDEKVVVRQSCEIALDMCDYEN 286 (500)
Q Consensus 214 aL~~~~--~~~~i~~L~~-~l~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~ 286 (500)
-+..+- .+.....-+. ++...++...|+..=.+.+....... .+..|.++..+.|...-..+++++|.+....
T Consensus 302 Ni~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~ 381 (734)
T KOG1061|consen 302 NINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA 381 (734)
T ss_pred hHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh
Confidence 433221 2222211111 11122222334444444544444332 4555666666778888888899998765432
Q ss_pred hhHhHHHHhhhccCCCChHHHHHHHHHhhcC-CCCHHHHHHHHHHHHhcCC---hhhHHHHHHHhcC-CCHHHHHHHHHH
Q psy10052 287 SVELQYADTLCKFKMIPEEKILLIGQVLKDS-SKPLKERFRALFTLKNIGG---KTAIQCISEAFAD-KSALLKHELAYC 361 (500)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~~~r~~a~~~L~~~~~---~~~~~~L~~~l~~-~~~~vr~~a~~a 361 (500)
... ...+..+.+++.-. +--..++...++-+.+... +..+..+...+++ .+++.|.+.+|.
T Consensus 382 e~~--------------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWi 447 (734)
T KOG1061|consen 382 EQS--------------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWI 447 (734)
T ss_pred hhh--------------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHH
Confidence 221 12233444444421 1111122233332222221 2234444444432 378899999999
Q ss_pred HhccCC--CccHHHHHHHhhc-CCCCHHHHHHHHHHHhhc--CCc-cHHHHHH----HhhcC-CCHhHHHHHHHHHHHhh
Q psy10052 362 LGQMKD--SDANDILRQVLED-KSQEPMVRHEAAEALGAI--GDK-SSISILE----KYAQD-PVKEVSETCYLALKRIQ 430 (500)
Q Consensus 362 L~~l~~--~~~~~~L~~~l~~-~~~~~~vR~~a~~aL~~~--~~~-~~~~~L~----~~l~d-~~~~vr~~A~~aL~~l~ 430 (500)
+|+... +.+...|..++++ .+++..|+..-+.|.-++ ..+ +....+. ....| .++++|..+...=+-+.
T Consensus 448 lg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 448 LGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 999875 3455555555543 223688888776666552 222 3333333 33344 67899998877666554
No 53
>KOG1078|consensus
Probab=98.50 E-value=0.00042 Score=70.23 Aligned_cols=223 Identities=20% Similarity=0.262 Sum_probs=132.8
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHccCC--CccHHHHHHHhhccC-CCHHHHHHHHHHHHhcCChhhHHHHHH----Hh
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQMKD--SDANDILRQVLEDKS-QEPMVRHEAAEALGAIGDKSSISILEK----YA 111 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--~~~~~~L~~~L~~~~-~d~~vr~~a~~aL~~~~~~~~~~~L~~----~l 111 (500)
+.=.+.+++.+.|+..|+..--+++.+.. .+.+-.+-.+.+|.. -.+..|..|+++|..+-+...+..+.+ ++
T Consensus 65 ~ff~~tKlfQskd~~LRr~vYl~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqai 144 (865)
T KOG1078|consen 65 LFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAI 144 (865)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHe
Confidence 44457788899999999987777777743 344444444444431 156789999999999987665555444 45
Q ss_pred cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC--
Q psy10052 112 QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS-- 189 (500)
Q Consensus 112 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~-- 189 (500)
-|..+.++..|.-.--.+-....... ..-.....+.. .+.+..+++.|+..|.++..
T Consensus 145 vd~~~avSsaalvss~hll~~~~~~v-------------------krw~neiqea~--~s~~~m~QyHalglLyqirk~d 203 (865)
T KOG1078|consen 145 VDKNPAVSSAALVSSYHLLPISFDVV-------------------KRWANEVQEAV--NSDNIMVQYHALGLLYQIRKND 203 (865)
T ss_pred eccccccchHHHHHHhhhhcccHHHH-------------------HHHHHhhhhcc--CcHHHHHHHHHHHHHHHHHhhh
Confidence 68888887665543222211000000 00011222222 12334567777777777644
Q ss_pred hhhHHHHHhhccC---CCHhHH----HHHHHHHhccC--CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC------c
Q psy10052 190 VESTLALTEGLSH---GSSLYR----HEIAFVLGQMQ--NPSSIPALTSALEDQTQNEMVRHECAEALGAIAT------P 254 (500)
Q Consensus 190 ~~~i~~l~~~L~~---~~~~vr----~~a~~aL~~~~--~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~------~ 254 (500)
.-++..++..+.. .++.-+ +.+...+.+.. .....+.+-.++.+. ..+|...++.++..+.. .
T Consensus 204 rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K--~emV~~EaArai~~l~~~~~r~l~ 281 (865)
T KOG1078|consen 204 RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHK--SEMVIYEAARAIVSLPNTNSRELA 281 (865)
T ss_pred HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhch--hHHHHHHHHHHHhhccccCHhhcc
Confidence 2344555544433 122111 22333333331 223466677777763 46799999999876543 1
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHhhhccc
Q psy10052 255 ECYDVLRKYLSDEKVVVRQSCEIALDMCDY 284 (500)
Q Consensus 255 ~~~~~L~~~l~~~~~~vr~~a~~al~~l~~ 284 (500)
.++..|.-+++++...+|-+|...|.++..
T Consensus 282 pavs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 282 PAVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999986653
No 54
>KOG0213|consensus
Probab=98.46 E-value=0.00065 Score=68.42 Aligned_cols=433 Identities=15% Similarity=0.111 Sum_probs=241.6
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHc----cCCCHHHHHHHHHHHHccCCCccHHHHHHHhh----ccCCCH
Q psy10052 14 LKDSSKPLKERFRALFTLKNIGGKTAIQCISEAF----ADESALLKHELAYCLGQMKDSDANDILRQVLE----DKSQEP 85 (500)
Q Consensus 14 L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l----~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~----~~~~d~ 85 (500)
|=++|.. .|......+.++....-+...+..+ .+.|++||....++.+...+.-.++.|..+|+ +.+ .+
T Consensus 450 lided~y--ar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~Skk-Sw 526 (1172)
T KOG0213|consen 450 LIDEDYY--ARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKK-SW 526 (1172)
T ss_pred eecchHH--HhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcccc-ch
Confidence 3345543 7777766666655433444555555 35689999998888877655444455554443 332 57
Q ss_pred HHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCC
Q psy10052 86 MVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLD 155 (500)
Q Consensus 86 ~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (500)
.-|+..++..-+|+. ...+.-+..++.|+...||..++.+|+.+..... +|.
T Consensus 527 qaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~---------Pyg--------- 588 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAAT---------PYG--------- 588 (1172)
T ss_pred hhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcC---------Ccc---------
Confidence 778877777665542 1344555667789999999998888887654221 110
Q ss_pred CcccHHHHHHHhcC---CCcCHHHHHHHHHHHHcC---CC--------hhhHHHHHhhccCCCHhHHHHHHHHHhccCCC
Q psy10052 156 DVSDINKLKEILLN---ENEDLFMRYKAMFKLRDI---NS--------VESTLALTEGLSHGSSLYRHEIAFVLGQMQNP 221 (500)
Q Consensus 156 ~~~~~~~L~~~l~d---~~~~~~~r~~A~~~L~~~---~~--------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~ 221 (500)
-...+.+.+.|-. .+... .-.+-+.+.+.+ -+ .+++-.+++-+.+|+.+.++.++..+.++...
T Consensus 589 -ie~fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t 666 (1172)
T KOG0213|consen 589 -IEQFDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCAT 666 (1172)
T ss_pred -hHHHHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc
Confidence 1112222222210 01110 111112222221 11 13455566666778888888888888776532
Q ss_pred ----------CcHHHHHHHhhc------cCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhcccc
Q psy10052 222 ----------SSIPALTSALED------QTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYE 285 (500)
Q Consensus 222 ----------~~i~~L~~~l~~------~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~ 285 (500)
+.+|.+...+.. ......+...+...-..+|....+..+..-+.|+.+..|........++-..
T Consensus 667 ~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~ 746 (1172)
T KOG0213|consen 667 DGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGR 746 (1172)
T ss_pred cCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhc
Confidence 233433333221 0001112223333334677777788888888888888888777666543211
Q ss_pred chhHhHHHHhhhccCCCC---hHHHHHHHHHhhcCCCCHHHHHHH----HHHHHh---cCChhhHHHHHHHhcCCCHHHH
Q psy10052 286 NSVELQYADTLCKFKMIP---EEKILLIGQVLKDSSKPLKERFRA----LFTLKN---IGGKTAIQCISEAFADKSALLK 355 (500)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~---~~~~~~l~~~l~~~~~~~~~r~~a----~~~L~~---~~~~~~~~~L~~~l~~~~~~vr 355 (500)
++..+-+. +..+..+...+...+....+.... ...|+. ...+..+..++..|+++++.+|
T Consensus 747 ----------lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vR 816 (1172)
T KOG0213|consen 747 ----------LGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVR 816 (1172)
T ss_pred ----------cccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHH
Confidence 11111110 112223333344443332222222 222322 1224556667778899999999
Q ss_pred HHHHHHHhccCC-------Cc----cHHHHHHHhhcCCCCHHHHHHHHHHHhhcC-----------CccHHHHHHHhhcC
Q psy10052 356 HELAYCLGQMKD-------SD----ANDILRQVLEDKSQEPMVRHEAAEALGAIG-----------DKSSISILEKYAQD 413 (500)
Q Consensus 356 ~~a~~aL~~l~~-------~~----~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~-----------~~~~~~~L~~~l~d 413 (500)
..++..++.+.. .. ..-.|.+.+... .++|=-..+.|+..|- -.+.+|.|...|+.
T Consensus 817 qqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgee--ypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn 894 (1172)
T KOG0213|consen 817 QQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEE--YPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN 894 (1172)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcc--cHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh
Confidence 999988876632 11 233455555543 6777666555554432 13678889999999
Q ss_pred CCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHH---HHHHHHhcCCccHHHHHHHHHHhHhc---
Q psy10052 414 PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDIN---KLKEILLNENEDLFMRYKAMFKLRDI--- 487 (500)
Q Consensus 414 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~r~~a~~al~~~--- 487 (500)
+...|+..++.-++.|......- +..++-+. .|.++|..-++ ..|.+|...+|-|
T Consensus 895 rheKVqen~IdLvg~IadrgpE~-----------------v~aREWMRIcfeLlelLkahkK--~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 895 RHEKVQENCIDLVGTIADRGPEY-----------------VSAREWMRICFELLELLKAHKK--EIRRAAVNTFGYIAKA 955 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhcCccc-----------------CCHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHh
Confidence 99999999999999987654220 01122222 34555543333 3899999988876
Q ss_pred -CChhhHHHhhcCC
Q psy10052 488 -NSVESTLALTEGV 500 (500)
Q Consensus 488 -g~~~~~~~l~~~~ 500 (500)
|.-+....|..|+
T Consensus 956 IGPqdVLatLlnnL 969 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNL 969 (1172)
T ss_pred cCHHHHHHHHHhcc
Confidence 7777777776653
No 55
>KOG1058|consensus
Probab=98.43 E-value=0.0001 Score=74.09 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=46.4
Q ss_pred hHHHHHhhccCCCHhHHHHHHHHHhccCC-CC----cHHHHHHHhhccCCCHHHHHHHHHHHhhcC--C----chHHHHH
Q psy10052 192 STLALTEGLSHGSSLYRHEIAFVLGQMQN-PS----SIPALTSALEDQTQNEMVRHECAEALGAIA--T----PECYDVL 260 (500)
Q Consensus 192 ~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-~~----~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~----~~~~~~L 260 (500)
.+..+..+|...++.|+.+++..|-.+.. |. +...+++++.+.+ +..++.-...-|..+. . .+.+-.+
T Consensus 244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kes-dnnvklIvldrl~~l~~~~~~il~~l~mDv 322 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKES-DNNVKLIVLDRLSELKALHEKILQGLIMDV 322 (948)
T ss_pred HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhcc-CcchhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 45556666666666666666666655542 22 2333445554332 2234444444444333 1 2233445
Q ss_pred HHhhcCCcHHHHHHHHHHh
Q psy10052 261 RKYLSDEKVVVRQSCEIAL 279 (500)
Q Consensus 261 ~~~l~~~~~~vr~~a~~al 279 (500)
...++.+|-.||..+..-.
T Consensus 323 LrvLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 323 LRVLSSPDLDVRSKTLDIA 341 (948)
T ss_pred HHHcCcccccHHHHHHHHH
Confidence 5678899999998876543
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.42 E-value=0.00056 Score=66.89 Aligned_cols=401 Identities=13% Similarity=0.081 Sum_probs=204.6
Q ss_pred HHHhhcCCCCCHHHHHH---HHHHHHhcCCcc--hHHHHHHHccCCCH-HHHHHHHHHHHccCCCccHHHHHHHhhccC-
Q psy10052 10 IGQVLKDSSKPLKERFR---ALFTLKNIGGKT--AIQCISEAFADESA-LLKHELAYCLGQMKDSDANDILRQVLEDKS- 82 (500)
Q Consensus 10 L~~~L~~~~~~~~~R~~---A~~~L~~~~~~~--~~~~L~~~l~~~~~-~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~- 82 (500)
+.++.+|.|.+ .|.. |+..|..+.++. ....+.+-+..+.+ .+|-.|++.|-..-+.+.++...+.|+..-
T Consensus 70 i~KlFQhkd~~--Lrq~VY~aIkelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~V 147 (898)
T COG5240 70 ILKLFQHKDLY--LRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFV 147 (898)
T ss_pred HHHHHhcCChH--HHHHHHHHHHHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhcc
Confidence 34566788876 6654 555555544331 22334444443434 788889998888777666666666665421
Q ss_pred -CCHHHHHHHHHHHHhc-CC---------hhhHHHHHHHh------------cCCCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 83 -QEPMVRHEAAEALGAI-GD---------KSSISILEKYA------------QDPVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 83 -~d~~vr~~a~~aL~~~-~~---------~~~~~~L~~~l------------~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
-.+.+|.+|+=.--.+ +. .+..+.+..+- -..++--+.+|.--|.++.....-...+
T Consensus 148 s~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lk 227 (898)
T COG5240 148 STSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLK 227 (898)
T ss_pred ccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHH
Confidence 0344444433221111 11 01122222221 1224556777777777765422111111
Q ss_pred cccCcCCCC---CC--CCCCC----------CcccHHHHHHHhcC--CCcCHHHHHHHHHHHH-----cCCCh---hhHH
Q psy10052 140 DTGNIYGSV---DP--TPPLD----------DVSDINKLKEILLN--ENEDLFMRYKAMFKLR-----DINSV---ESTL 194 (500)
Q Consensus 140 ~~~~~~~~~---~~--~~~~~----------~~~~~~~L~~~l~d--~~~~~~~r~~A~~~L~-----~~~~~---~~i~ 194 (500)
+.. +|... .- +.-.. +.....++..+|.+ ++....+...++.+.. ++++. +.+.
T Consensus 228 lv~-hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs 306 (898)
T COG5240 228 LVE-HFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVS 306 (898)
T ss_pred HHH-HhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 100 00000 00 00000 02223333333322 1112334444443333 23332 4566
Q ss_pred HHHhhccCCCHhHHHHHHHHHhccC--CCC----cHHHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHH----hh
Q psy10052 195 ALTEGLSHGSSLYRHEIAFVLGQMQ--NPS----SIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRK----YL 264 (500)
Q Consensus 195 ~l~~~L~~~~~~vr~~a~~aL~~~~--~~~----~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~----~l 264 (500)
.|..+|+.+....|..|++.|.++. .|+ +=+.+-.++.| .+..+-..|+..|-..|..+.++.|.. ++
T Consensus 307 ~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd--~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfv 384 (898)
T COG5240 307 SLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISD--ENRTISTYAITTLLKTGTEETIDRLVNLIPSFV 384 (898)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhc--ccccchHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 6666777777778888888877654 121 12334455555 344566677777777787766655554 33
Q ss_pred cCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC------hh
Q psy10052 265 SDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG------KT 338 (500)
Q Consensus 265 ~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~------~~ 338 (500)
.|-+...+..++.++..+.-..+.. ....+..|...|.++. ...-...++.++..+.. +.
T Consensus 385 hD~SD~FKiI~ida~rsLsl~Fp~k-------------~~s~l~FL~~~L~~eG-g~eFK~~~Vdaisd~~~~~p~skEr 450 (898)
T COG5240 385 HDMSDGFKIIAIDALRSLSLLFPSK-------------KLSYLDFLGSSLLQEG-GLEFKKYMVDAISDAMENDPDSKER 450 (898)
T ss_pred HhhccCceEEeHHHHHHHHhhCcHH-------------HHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhhCchHHHH
Confidence 4443333333444443322111110 0111234444444422 22334445555543321 34
Q ss_pred hHHHHHHHhcCCC-HHHHHHHHHHHhccCCCc-----cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------ccHH
Q psy10052 339 AIQCISEAFADKS-ALLKHELAYCLGQMKDSD-----ANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSI 404 (500)
Q Consensus 339 ~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~~-----~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------~~~~ 404 (500)
++..|...++|-. +.+.......||+=++.. .+..+.+.+--. +.-||.+|+.||.+++- ..+.
T Consensus 451 aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE--N~ivRsaAv~aLskf~ln~~d~~~~~sv~ 528 (898)
T COG5240 451 ALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE--NNIVRSAAVQALSKFALNISDVVSPQSVE 528 (898)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh--hhHHHHHHHHHHHHhccCccccccHHHHH
Confidence 5666777776654 344444555566554432 455555544333 58899999999988763 2355
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 405 SILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 405 ~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
..|..+++|.|.+||..|..+|..|..
T Consensus 529 ~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 529 NALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 677888999999999999999999974
No 57
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=98.34 E-value=0.00013 Score=76.10 Aligned_cols=232 Identities=15% Similarity=0.173 Sum_probs=156.4
Q ss_pred hhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHH-hhc--CCchHHHHHHHhhcC
Q psy10052 190 VESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEAL-GAI--ATPECYDVLRKYLSD 266 (500)
Q Consensus 190 ~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL-~~~--~~~~~~~~L~~~l~~ 266 (500)
.+.+..+.+.+.......|.....++...|.+.++..+.+.+................+ ..+ .+...+..+.+++.+
T Consensus 325 ~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~ 404 (574)
T smart00638 325 EEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAES 404 (574)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcC
Confidence 34555555544441167888889999999999999999999887544433333333333 232 355678888888876
Q ss_pred C----cHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhc--CCCCHHHHHHHHHHHHhcCChhhH
Q psy10052 267 E----KVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKD--SSKPLKERFRALFTLKNIGGKTAI 340 (500)
Q Consensus 267 ~----~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~~~r~~a~~~L~~~~~~~~~ 340 (500)
+ .+.++..|+.+++.+....+....... .......++.+.+.+.+ ...+...+...+.+||++|.+..+
T Consensus 405 ~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i 479 (574)
T smart00638 405 PEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-----DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSI 479 (574)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-----hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHH
Confidence 4 578999999998865432211000000 00001223333333332 112234678899999999999999
Q ss_pred HHHHHHhc-CC--CHHHHHHHHHHHhcc---CCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhc-CCccHHHHHHHhh-c
Q psy10052 341 QCISEAFA-DK--SALLKHELAYCLGQM---KDSDANDILRQVLEDKSQEPMVRHEAAEALGAI-GDKSSISILEKYA-Q 412 (500)
Q Consensus 341 ~~L~~~l~-~~--~~~vr~~a~~aL~~l---~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~-~~~~~~~~L~~~l-~ 412 (500)
+.+...+. +. +..+|.+|+++|.++ .+..+.+.|..++.+..+++++|.+|+..|-.. ++...+..+...+ .
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNK 559 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 99988886 33 578999999999977 455678889999999888999999999999887 5556667777666 6
Q ss_pred CCCHhHHHHHHHHH
Q psy10052 413 DPVKEVSETCYLAL 426 (500)
Q Consensus 413 d~~~~vr~~A~~aL 426 (500)
+++..|+......|
T Consensus 560 E~~~QV~sfv~S~l 573 (574)
T smart00638 560 EPNLQVASFVYSHI 573 (574)
T ss_pred cCcHHHHHHhHHhh
Confidence 78888887665543
No 58
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=98.33 E-value=7.4e-05 Score=78.85 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=150.1
Q ss_pred ChhhHHHHHhhccCC--CHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC---CchHHHHHHHh
Q psy10052 189 SVESTLALTEGLSHG--SSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIA---TPECYDVLRKY 263 (500)
Q Consensus 189 ~~~~i~~l~~~L~~~--~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~ 263 (500)
+.+.+..+.+.+... ....|.....+|...|...++..+.+.+.............+..|.... +...+..+..+
T Consensus 360 ~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L 439 (618)
T PF01347_consen 360 SYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFEL 439 (618)
T ss_dssp -HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 345566666655554 5788999999999999999999999998875443333334444444333 34566777777
Q ss_pred hcCC----cHHHHHHHHHHhhhccccchhHhHHHHhh-hccCCCChHHHHHHHHHhhc--CCCCHHHHHHHHHHHHhcCC
Q psy10052 264 LSDE----KVVVRQSCEIALDMCDYENSVELQYADTL-CKFKMIPEEKILLIGQVLKD--SSKPLKERFRALFTLKNIGG 336 (500)
Q Consensus 264 l~~~----~~~vr~~a~~al~~l~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~~l~~--~~~~~~~r~~a~~~L~~~~~ 336 (500)
++.+ ++.++..|+.+++.+.............. ..........++.+...+.. ...+...+..++.+||++|.
T Consensus 440 ~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~ 519 (618)
T PF01347_consen 440 AKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH 519 (618)
T ss_dssp HT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-
T ss_pred HhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC
Confidence 7654 56899999999986654332211000000 00011112223344444431 12234578999999999999
Q ss_pred hhhHHHHHHHhcCC---CHHHHHHHHHHHhccCC---CccHHHHHHHhhcCCCCHHHHHHHHHHHhhc-CCccHHHHHHH
Q psy10052 337 KTAIQCISEAFADK---SALLKHELAYCLGQMKD---SDANDILRQVLEDKSQEPMVRHEAAEALGAI-GDKSSISILEK 409 (500)
Q Consensus 337 ~~~~~~L~~~l~~~---~~~vr~~a~~aL~~l~~---~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~-~~~~~~~~L~~ 409 (500)
+..++.|...+.+. ...+|.+|+++|.++.. ..+.+.|..++.|..++.++|.+|+..|-.- +....+..+..
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~ 599 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQ 599 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHH
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999988876 78899999999996633 3578899999999888999999999999887 55566777777
Q ss_pred hh-cCCCHhHHHHHHHHH
Q psy10052 410 YA-QDPVKEVSETCYLAL 426 (500)
Q Consensus 410 ~l-~d~~~~vr~~A~~aL 426 (500)
.+ .+++..|+......|
T Consensus 600 ~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHTT-S-HHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHhc
Confidence 66 678899887776555
No 59
>KOG1078|consensus
Probab=98.29 E-value=0.0027 Score=64.65 Aligned_cols=219 Identities=18% Similarity=0.185 Sum_probs=117.5
Q ss_pred hHHHHHhhccCCCHhHHHHHHHHHhccC--CCCcH----HHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHh--
Q psy10052 192 STLALTEGLSHGSSLYRHEIAFVLGQMQ--NPSSI----PALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKY-- 263 (500)
Q Consensus 192 ~i~~l~~~L~~~~~~vr~~a~~aL~~~~--~~~~i----~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~-- 263 (500)
++..+..+++.+.+.+|..|++.|.++. .|..+ ..|-.++.| .+..+-.-|+..|-..|....+..|.+.
T Consensus 283 avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd--~NrsIat~AITtLLKTG~e~sv~rLm~qI~ 360 (865)
T KOG1078|consen 283 AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITD--SNRSIATLAITTLLKTGTESSVDRLMKQIS 360 (865)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcc--cccchhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5556666666677777777777665543 22221 223444444 2334455555555566665554444432
Q ss_pred -----hcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC---
Q psy10052 264 -----LSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG--- 335 (500)
Q Consensus 264 -----l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~--- 335 (500)
++|+...|-..++.+|...-... -......|..+|.++. .+.-....+.++..+.
T Consensus 361 ~fv~disDeFKivvvdai~sLc~~fp~k----------------~~~~m~FL~~~Lr~eG-g~e~K~aivd~Ii~iie~~ 423 (865)
T KOG1078|consen 361 SFVSDISDEFKIVVVDAIRSLCLKFPRK----------------HTVMMNFLSNMLREEG-GFEFKRAIVDAIIDIIEEN 423 (865)
T ss_pred HHHHhccccceEEeHHHHHHHHhhccHH----------------HHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhC
Confidence 22333333333444443111000 0112234555555522 2222333333333221
Q ss_pred ---ChhhHHHHHHHhcCCC-HHHHHHHHHHHhccCCC-----ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--C----
Q psy10052 336 ---GKTAIQCISEAFADKS-ALLKHELAYCLGQMKDS-----DANDILRQVLEDKSQEPMVRHEAAEALGAIG--D---- 400 (500)
Q Consensus 336 ---~~~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~-----~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~---- 400 (500)
....+..|...++|-. ..+-......||.=++. ..+..+.+.+--. +..||.+|+.+|.+++ .
T Consensus 424 pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLE--n~ivRaaAv~alaKfg~~~~~l~ 501 (865)
T KOG1078|consen 424 PDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILE--NAIVRAAAVSALAKFGAQDVVLL 501 (865)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhh--hhhhHHHHHHHHHHHhcCCCCcc
Confidence 1234556666665543 23333344444443332 3566666555444 6899999999999998 2
Q ss_pred ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 401 KSSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 401 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
+.+...|..++.|.|..||.+|..+|..+..
T Consensus 502 ~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 502 PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 3456677888999999999999999999873
No 60
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.27 E-value=0.0015 Score=68.01 Aligned_cols=322 Identities=16% Similarity=0.158 Sum_probs=164.2
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccC----------CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMK----------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 100 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------ 100 (500)
...++.|++.|+.++..+...++..|..+. ...+++.|.+++..+ +..++..+++.|.++..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~--~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE--NEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhCcCHHHHH
Confidence 346777777777667777666666665542 245677777777766 56677777777777653
Q ss_pred ----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHH
Q psy10052 101 ----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFM 176 (500)
Q Consensus 101 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~ 176 (500)
.+.+|.|+.++.+++ .+..+...|.++..+...... |.. .+.++.+++.+.... +..+
T Consensus 367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~------f~~---------TdcIp~L~~~Ll~~~-~~~v 428 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM------FAY---------TDCIPQLMQMLLENS-EEEV 428 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH------Hhh---------cchHHHHHHHHHhCC-Cccc
Confidence 245677777776654 444566666666543322211 100 223566666553221 1112
Q ss_pred HHHHHHHHHcCCC----------hhhHHHHHh-hccCCCHhHHHHHHHHHhccC------CCCcHHHHHHHhhccCCCHH
Q psy10052 177 RYKAMFKLRDINS----------VESTLALTE-GLSHGSSLYRHEIAFVLGQMQ------NPSSIPALTSALEDQTQNEM 239 (500)
Q Consensus 177 r~~A~~~L~~~~~----------~~~i~~l~~-~L~~~~~~vr~~a~~aL~~~~------~~~~i~~L~~~l~~~~~~~~ 239 (500)
...++..+.+... ...++.|++ .++..++.+ ...++-+.... ...++..|+..+...+ +.+
T Consensus 429 ~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lL-lKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~-~ee 506 (708)
T PF05804_consen 429 QLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLL-LKLIRNISQHDGPLKELFVDFIGDLAKIVSSGD-SEE 506 (708)
T ss_pred cHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC-cHH
Confidence 2222222222111 012222222 222333322 12333332222 1134556666666543 567
Q ss_pred HHHHHHHHHhhcCCc-----------hHHHHHHHhhcCC--cHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHH
Q psy10052 240 VRHECAEALGAIATP-----------ECYDVLRKYLSDE--KVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEK 306 (500)
Q Consensus 240 vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~--~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~ 306 (500)
....++..|+++..+ ..+|.|...+... .+.+...++..+|.+.....
T Consensus 507 ~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~------------------- 567 (708)
T PF05804_consen 507 FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE------------------- 567 (708)
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH-------------------
Confidence 777777777776532 3466777777533 34555566666654433211
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcC--CCHHHHHHHHHHHhcc-----------CCCccHHH
Q psy10052 307 ILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFAD--KSALLKHELAYCLGQM-----------KDSDANDI 373 (500)
Q Consensus 307 ~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~l-----------~~~~~~~~ 373 (500)
++..+.+ ...++.|+++|.+ +|.+.-.+.+.++.++ ....++..
T Consensus 568 --------------------~A~lL~~---sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~y 624 (708)
T PF05804_consen 568 --------------------CAPLLAK---SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAY 624 (708)
T ss_pred --------------------HHHHHHh---CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHH
Confidence 1111111 1234444444432 1333333333333332 23457889
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhcCC--ccHHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 374 LRQVLEDKSQEPMVRHEAAEALGAIGD--KSSISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 374 L~~~l~~~~~~~~vR~~a~~aL~~~~~--~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
|++++.|+ +..+|..+=.+|.-+.. +++...+ .....|..=.+.|..+.
T Consensus 625 lidL~~d~--N~~ir~~~d~~Ldii~e~d~~w~~ri------~~~kF~~hN~~WLe~v~ 675 (708)
T PF05804_consen 625 LIDLMHDK--NAEIRKVCDNALDIIAEYDEEWAERI------RREKFRWHNAQWLEMVE 675 (708)
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHHhCHHHHHHh------hHHHHHHHHHHHHHHHh
Confidence 99999988 69999998888877643 2222222 22344455555566654
No 61
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.27 E-value=6.8e-05 Score=68.35 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=105.0
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhcc
Q psy10052 71 NDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKD 140 (500)
Q Consensus 71 ~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~ 140 (500)
.+.|+.+|+... ||.++..+.-+++.... .+.++.+..++.++++.+|..|..+|.++.........
T Consensus 14 l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~-- 90 (254)
T PF04826_consen 14 LQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ-- 90 (254)
T ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH--
Confidence 455555555443 55666666666655432 25678888999999999999999999987643222110
Q ss_pred ccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh--------hhHHHHHhhccCCCHhHHHHHH
Q psy10052 141 TGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV--------ESTLALTEGLSHGSSLYRHEIA 212 (500)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~--------~~i~~l~~~L~~~~~~vr~~a~ 212 (500)
+ +..++.+.+.+.....+..++..++..|.+..-. ..++.+..+|...+..+|..++
T Consensus 91 -------------I--k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 91 -------------I--KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred -------------H--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHH
Confidence 0 3346666665544434445788889998886432 4677888888888889999999
Q ss_pred HHHhccCC----------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhc
Q psy10052 213 FVLGQMQN----------PSSIPALTSALEDQTQNEMVRHECAEALGAI 251 (500)
Q Consensus 213 ~aL~~~~~----------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~ 251 (500)
+.|..+.. .+....++.++... .+.++...++....++
T Consensus 156 k~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 156 KVLVNLSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENI 203 (254)
T ss_pred HHHHHhccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHH
Confidence 98877652 34556667666643 3455555555555444
No 62
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.00011 Score=71.52 Aligned_cols=270 Identities=19% Similarity=0.227 Sum_probs=156.5
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcC---CcchHHHHHHHccCC---CHHHHHHHHHHHHcc--C-CCccHHHHHHHhhccC-
Q psy10052 13 VLKDSSKPLKERFRALFTLKNIG---GKTAIQCISEAFADE---SALLKHELAYCLGQM--K-DSDANDILRQVLEDKS- 82 (500)
Q Consensus 13 ~L~~~~~~~~~R~~A~~~L~~~~---~~~~~~~L~~~l~~~---~~~vR~~a~~~L~~~--~-~~~~~~~L~~~L~~~~- 82 (500)
+|...+.| ..+.|...|+-+. ..+.-+.|...|-++ +.+..-.|.++||-+ + ..+..+.|.+.+.+..
T Consensus 344 wlgka~nW--aKFtatAslGvIH~gn~n~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~teD 421 (926)
T COG5116 344 WLGKASNW--AKFTATASLGVIHLGNSNPGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLDTED 421 (926)
T ss_pred hhhhcchH--hhhhhhhhceeEeeccCCchhHhhhccCCcccchhhhccCceeeeehhhccCcCcccHHHHHHHhCcccc
Confidence 34444443 6666666666543 123345555555422 235555566666644 2 2233456665544432
Q ss_pred C-CHHHHHHHHHHHHhc--C--ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccc-hhh-cc----ccCcCCCCCCC
Q psy10052 83 Q-EPMVRHEAAEALGAI--G--DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEE-DKQ-KD----TGNIYGSVDPT 151 (500)
Q Consensus 83 ~-d~~vr~~a~~aL~~~--~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~~-~~----~~~~~~~~~~~ 151 (500)
+ .|.+...++--+|-+ + +.+..+.|..++..+....-.+|...++-+.-.... ..+ .+ +.-.+..+..+
T Consensus 422 e~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~Rg 501 (926)
T COG5116 422 ELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKRG 501 (926)
T ss_pred cccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHhh
Confidence 1 124444444444432 2 234555666666555555555555555443211000 000 00 00000000000
Q ss_pred CCCC--------CcccHHHHHHHhcCCCcCHHHHHHHHHHHHc----CCChhhHHHHHhh-ccCCCHhHHHHHHHHHhcc
Q psy10052 152 PPLD--------DVSDINKLKEILLNENEDLFMRYKAMFKLRD----INSVESTLALTEG-LSHGSSLYRHEIAFVLGQM 218 (500)
Q Consensus 152 ~~~~--------~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~----~~~~~~i~~l~~~-L~~~~~~vr~~a~~aL~~~ 218 (500)
..++ ++.+-.-+.+++.|. +...|...+.+++- .+...++..++.. .+|.+.+||++|+-+||-+
T Consensus 502 lgig~aLi~ygrqe~add~I~ell~d~--ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfv 579 (926)
T COG5116 502 LGIGFALILYGRQEMADDYINELLYDK--DSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFV 579 (926)
T ss_pred hhhhhhHhhhhhHHHHHHHHHHHhcCc--hHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeee
Confidence 1110 033444455666544 45578877665543 3455677777775 6888999999999999976
Q ss_pred C--CCCcHHHHHHHhhccCCCHHHHHHHHHHHhh----cCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccch
Q psy10052 219 Q--NPSSIPALTSALEDQTQNEMVRHECAEALGA----IATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENS 287 (500)
Q Consensus 219 ~--~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~----~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~ 287 (500)
. ++..++..+++|.+. .++-||...+-+||- .|+..+++.|..+..|+..-||+.|..+++.|-....
T Consensus 580 c~~D~~~lv~tvelLs~s-hN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 580 CCDDRDLLVGTVELLSES-HNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred EecCcchhhHHHHHhhhc-cchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 5 778888999999865 689999999999874 3455689999999999999999999999997765544
No 63
>KOG1061|consensus
Probab=98.26 E-value=0.00054 Score=69.62 Aligned_cols=395 Identities=16% Similarity=0.159 Sum_probs=210.9
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CC--cchHHHHHHHccCCCHHHHHHHHHHHHccCC---Cc---cHHH
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNI---GG--KTAIQCISEAFADESALLKHELAYCLGQMKD---SD---ANDI 73 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~---~~--~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~---~~---~~~~ 73 (500)
..+..|.+.|.+.... .|..|++..-.. |. ....+.+++++...|-.++.-.-..|...+. .. ++..
T Consensus 13 ~ei~elks~l~s~~~~--kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt 90 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKE--KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNT 90 (734)
T ss_pred hhchHHHHHhhhhhhh--hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhh
Confidence 4567777778665554 677776655542 32 2467778888887776665554444555432 22 3344
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCChh----hHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCC
Q psy10052 74 LRQVLEDKSQEPMVRHEAAEALGAIGDKS----SISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVD 149 (500)
Q Consensus 74 L~~~L~~~~~d~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~ 149 (500)
+.+-..|+ +|.+|.-|++.++.+..+. ....|.++++|.++.||..++....++....... +.
T Consensus 91 ~~kD~~d~--np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~-----------~~ 157 (734)
T KOG1061|consen 91 FLKDCEDP--NPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL-----------VE 157 (734)
T ss_pred hhccCCCC--CHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhh-----------cc
Confidence 44444445 8999999999999987653 4567888999999999999999998876432110 01
Q ss_pred CCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh-----------hhHHHHHhhccCCCHhHHHHHHHHHhcc
Q psy10052 150 PTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV-----------ESTLALTEGLSHGSSLYRHEIAFVLGQM 218 (500)
Q Consensus 150 ~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~-----------~~i~~l~~~L~~~~~~vr~~a~~aL~~~ 218 (500)
+ .+.++.|...+.| +++.+-..|+.+|..+... ..+..++..+..-+..-+......+...
T Consensus 158 ~------~gl~~~L~~ll~D--~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 158 D------SGLVDALKDLLSD--SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEY 229 (734)
T ss_pred c------cchhHHHHHHhcC--CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 1 4467888888864 4555788888888776432 3444455555444444444555555444
Q ss_pred CCCC------cHHHHHHHhhccCCCHHHHHHHHHHHhhcC---Cc-------hHHHHHHHhhcCCcHHHHHHHHHHhhhc
Q psy10052 219 QNPS------SIPALTSALEDQTQNEMVRHECAEALGAIA---TP-------ECYDVLRKYLSDEKVVVRQSCEIALDMC 282 (500)
Q Consensus 219 ~~~~------~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~-------~~~~~L~~~l~~~~~~vr~~a~~al~~l 282 (500)
-... ....+...+.+. ++.|...+...+-..- .. ..-+.+..++..+. .+...++.-+..+
T Consensus 230 ~p~d~~ea~~i~~r~~p~Lqh~--n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDSREAEDICERLTPRLQHA--NSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCchhHHHHHHHhhhhhccC--CcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 3221 222223333332 2333333333332111 00 01112222232222 4444443333322
Q ss_pred cccchhHh--HHHHhhhccCCC---------------Ch----HHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----
Q psy10052 283 DYENSVEL--QYADTLCKFKMI---------------PE----EKILLIGQVLKDSSKPLKERFRALFTLKNIGG----- 336 (500)
Q Consensus 283 ~~~~~~~~--~~~~~l~~~~~~---------------~~----~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~----- 336 (500)
-......+ ++...+.+...+ .. ..++.+.+...+-+ ...-..++++++++..
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD--~~fvrkaIraig~~aik~e~~ 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVD--VDFVRKAVRAIGRLAIKAEQS 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhC--HHHHHHHHHHhhhhhhhhhhh
Confidence 22221110 000000000000 01 11222333322333 3455678888887653
Q ss_pred hhhHHHHHHHhcCCCHHHH---HHHHHHHhccCCCc---cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--ccHHHHHH
Q psy10052 337 KTAIQCISEAFADKSALLK---HELAYCLGQMKDSD---ANDILRQVLEDKSQEPMVRHEAAEALGAIGD--KSSISILE 408 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr---~~a~~aL~~l~~~~---~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--~~~~~~L~ 408 (500)
+..++.|+++++-.-..+- ...++-+.+..+.. .++.+...++.- .+|..|.+-++.||+.+. +++...|.
T Consensus 385 ~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl-~epeak~amiWilg~y~~~i~~a~elL~ 463 (734)
T KOG1061|consen 385 NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSL-QEPEAKAALIWILGEYAERIENALELLE 463 (734)
T ss_pred hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccccccc-CChHHHHHHHHHHhhhhhccCcHHHHHH
Confidence 3467788888874433332 33334444433332 455555555544 379999999999999764 34555555
Q ss_pred Hhh---cCCCHhHHHHHHHHHHH
Q psy10052 409 KYA---QDPVKEVSETCYLALKR 428 (500)
Q Consensus 409 ~~l---~d~~~~vr~~A~~aL~~ 428 (500)
.++ .|+...|+..-..+.-+
T Consensus 464 ~f~en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 464 SFLENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred HHHhhcccchHHHHHHHHHHHHH
Confidence 554 57777787766665555
No 64
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.18 E-value=0.00054 Score=67.52 Aligned_cols=392 Identities=14% Similarity=0.074 Sum_probs=187.4
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHccCCCHHHHHHHHHHHHcc---CCCccH---H
Q psy10052 9 LIGQVLKDSSKPLKERFRALFTLKNIGG----------KTAIQCISEAFADESALLKHELAYCLGQM---KDSDAN---D 72 (500)
Q Consensus 9 ~L~~~L~~~~~~~~~R~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~---~~~~~~---~ 72 (500)
.+++.+.+....|..|...++...+++. ...+..+.++++|.+..||.-++.+|+.+ ..+..+ .
T Consensus 319 pfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd 398 (975)
T COG5181 319 PFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFD 398 (975)
T ss_pred HHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHH
Confidence 3444455555457799999888877651 24667777888899999998777666544 333333 3
Q ss_pred HHHHHhhccC-C-CHHHHHHHHHHHHhcC---C--------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 73 ILRQVLEDKS-Q-EPMVRHEAAEALGAIG---D--------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 73 ~L~~~L~~~~-~-d~~vr~~a~~aL~~~~---~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
.+...|...- + -..+-..-+.+.|-+- + .+....+...+++++.............+.......+..
T Consensus 399 ~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~ 478 (975)
T COG5181 399 EVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWK 478 (975)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHH
Confidence 3333333320 0 0112222233333221 1 134555666677777665554444444433211111100
Q ss_pred cccCcCCCCCCCCCCCCcccHHHHHHHh------cCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHH
Q psy10052 140 DTGNIYGSVDPTPPLDDVSDINKLKEIL------LNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAF 213 (500)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l------~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~ 213 (500)
+. +...+.+-..+ .|.-....+-.+.+..-...+++..+..++..++|+....|...+.
T Consensus 479 lr---------------~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~ 543 (975)
T COG5181 479 LR---------------DQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAG 543 (975)
T ss_pred HH---------------HhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhH
Confidence 00 00011111000 0000011111222233334567788899999999977666654333
Q ss_pred ----HHhccCCCCcH--------HHHHHHhhccCCCHHHHH----HHHHHHhhcCC---chHHHHHHHhhcCCcHHHHHH
Q psy10052 214 ----VLGQMQNPSSI--------PALTSALEDQTQNEMVRH----ECAEALGAIAT---PECYDVLRKYLSDEKVVVRQS 274 (500)
Q Consensus 214 ----aL~~~~~~~~i--------~~L~~~l~~~~~~~~vr~----~a~~aL~~~~~---~~~~~~L~~~l~~~~~~vr~~ 274 (500)
.++.++..++- ..+...++..+....+.. ....+++..+. +..+..+.+.|+++.+.+|..
T Consensus 544 ~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~ 623 (975)
T COG5181 544 LVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIR 623 (975)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHH
Confidence 33444433322 222223332211111110 11222332232 345677788999999999999
Q ss_pred HHHHhhhccccc--hhHhHHHHhhh-----ccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHh---cC-----Chhh
Q psy10052 275 CEIALDMCDYEN--SVELQYADTLC-----KFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKN---IG-----GKTA 339 (500)
Q Consensus 275 a~~al~~l~~~~--~~~~~~~~~l~-----~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~---~~-----~~~~ 339 (500)
++..++.+..-- +..++....++ .++......+..+ ..|+.++.. +. ....
T Consensus 624 aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsi--------------l~Ai~~I~sv~~~~~mqpPi~~i 689 (975)
T COG5181 624 AADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSI--------------LKAICSIYSVHRFRSMQPPISGI 689 (975)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHH--------------HHHHHHHhhhhcccccCCchhhc
Confidence 988877543211 11111111111 1222222222111 122222211 11 1234
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccCCCc-----------cHHHHHHHhhcCCCCHHHHHHHHHHHhhc----CCccHH
Q psy10052 340 IQCISEAFADKSALLKHELAYCLGQMKDSD-----------ANDILRQVLEDKSQEPMVRHEAAEALGAI----GDKSSI 404 (500)
Q Consensus 340 ~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~-----------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~----~~~~~~ 404 (500)
+|.|...|.+.+..|..+.+..+|.++... +.=.|++.|..- +-.+|.+|...+|.| |..+++
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~tfG~Is~aiGPqdvL 767 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--NKEIRRNATETFGCISRAIGPQDVL 767 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh--hHHHHHhhhhhhhhHHhhcCHHHHH
Confidence 566666677777777766666666655321 122355555544 466777777777765 344555
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 405 SILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 405 ~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
..|..-++..+...|.....+++-.+.
T Consensus 768 ~~LlnnLkvqeRq~RvctsvaI~iVae 794 (975)
T COG5181 768 DILLNNLKVQERQQRVCTSVAISIVAE 794 (975)
T ss_pred HHHHhcchHHHHHhhhhhhhhhhhhHh
Confidence 666655555555666555555555544
No 65
>KOG1058|consensus
Probab=98.16 E-value=0.0023 Score=64.73 Aligned_cols=221 Identities=15% Similarity=0.154 Sum_probs=133.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCc--chHHHHHH-HccCCCHHHHHHHHHHHHcc---C-CCc------
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNI---GGK--TAIQCISE-AFADESALLKHELAYCLGQM---K-DSD------ 69 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~---~~~--~~~~~L~~-~l~~~~~~vR~~a~~~L~~~---~-~~~------ 69 (500)
+..++.+.|.+.+.. .+..|...+-.. |++ ..+-.+++ .|-..+-.++.--.+.+--. . +..
T Consensus 21 ~~~~ik~~Lek~~~~--~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 21 SEDEIKEKLEKGDDE--VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred chHHHHHHHhcCChH--HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH
Confidence 456778888888775 777777665542 221 12222222 23355545544332222222 1 111
Q ss_pred -cHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhh----HHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCc
Q psy10052 70 -ANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS----ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNI 144 (500)
Q Consensus 70 -~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~ 144 (500)
....+.+=|+++ ++.+|-...+.|.++..++. +|.+..+|.+.++.||..|+-|+..|-....
T Consensus 99 Lvcna~RkDLQHP--NEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~---------- 166 (948)
T KOG1058|consen 99 LVCNAYRKDLQHP--NEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---------- 166 (948)
T ss_pred HHHHHHhhhccCc--hHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----------
Confidence 235556667888 78999999999999998764 5667778899999999999999987643210
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccC---CCHhHHHHHHHHHhccCC-
Q psy10052 145 YGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSH---GSSLYRHEIAFVLGQMQN- 220 (500)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~---~~~~vr~~a~~aL~~~~~- 220 (500)
.. -...+.|+.-+-..+.|+.-...|+..|.......++..+.....+ -++..+...++.+.+...
T Consensus 167 --~L--------~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~ 236 (948)
T KOG1058|consen 167 --HL--------IPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA 236 (948)
T ss_pred --hh--------cCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc
Confidence 00 1124555554433345555677788888877776777777765543 235555555555544432
Q ss_pred -----CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC
Q psy10052 221 -----PSSIPALTSALEDQTQNEMVRHECAEALGAIA 252 (500)
Q Consensus 221 -----~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 252 (500)
...+..+..+|... ++.|+..|+.+|..+.
T Consensus 237 ~p~~~~~~i~~i~~lL~st--ssaV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 237 NPAEKARYIRCIYNLLSST--SSAVIFEAAGTLVTLS 271 (948)
T ss_pred CHHHhhHHHHHHHHHHhcC--CchhhhhhcceEEEcc
Confidence 13455666667653 4677777776665543
No 66
>KOG1059|consensus
Probab=98.15 E-value=0.01 Score=60.09 Aligned_cols=241 Identities=15% Similarity=0.129 Sum_probs=144.2
Q ss_pred HHHHHHHHHhcCCh----hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHH
Q psy10052 88 RHEAAEALGAIGDK----SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKL 163 (500)
Q Consensus 88 r~~a~~aL~~~~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 163 (500)
---|+..|..+..+ +..+.+..+|++.-|.||..|+..+.++.-.-... . ...++.|
T Consensus 126 ~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----------l--------r~~FprL 186 (877)
T KOG1059|consen 126 VGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----------L--------RPCFPRL 186 (877)
T ss_pred hhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----------H--------hhhHHHH
Confidence 34466667777665 34567788889999999999999888764211000 0 2347888
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHcCCC--h----hhHHHHHhhccC-CCHhHHHHHHHHHhccCC------CCcHHHHHHH
Q psy10052 164 KEILLNENEDLFMRYKAMFKLRDINS--V----ESTLALTEGLSH-GSSLYRHEIAFVLGQMQN------PSSIPALTSA 230 (500)
Q Consensus 164 ~~~l~d~~~~~~~r~~A~~~L~~~~~--~----~~i~~l~~~L~~-~~~~vr~~a~~aL~~~~~------~~~i~~L~~~ 230 (500)
.+-|.| +|+.+..+|+..++.... | +..|.+.++|.+ .+..+-...+..+|.+.. ...+++|.++
T Consensus 187 ~EkLeD--pDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~l 264 (877)
T KOG1059|consen 187 VEKLED--PDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITEL 264 (877)
T ss_pred HHhccC--CCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHH
Confidence 888855 455678888877776432 2 244555555543 344455556666666542 2457777777
Q ss_pred hhccCCCHHHHHHHHHHHhhc----C--Cc-----hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhcc
Q psy10052 231 LEDQTQNEMVRHECAEALGAI----A--TP-----ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF 299 (500)
Q Consensus 231 l~~~~~~~~vr~~a~~aL~~~----~--~~-----~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~ 299 (500)
++.+. --.+-..+++.+-.. | +. -++..|..++.|.|++++.-.+.|++.|...+...++
T Consensus 265 i~sT~-AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-------- 335 (877)
T KOG1059|consen 265 MESTV-AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-------- 335 (877)
T ss_pred HHhhH-HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH--------
Confidence 76542 123445555554322 1 11 1466777788888999998888888877654433211
Q ss_pred CCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChh----hHHHHHHHhc-CCCHHHHHHHHHHHhcc
Q psy10052 300 KMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT----AIQCISEAFA-DKSALLKHELAYCLGQM 365 (500)
Q Consensus 300 ~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~----~~~~L~~~l~-~~~~~vr~~a~~aL~~l 365 (500)
..-..+.+.+.|.+++ +|.+|+..|..+.+.. .+..|...+. .+....|...+..+-.+
T Consensus 336 -----a~kdlIlrcL~DkD~S--IRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~i 399 (877)
T KOG1059|consen 336 -----AHKDLILRCLDDKDES--IRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISI 399 (877)
T ss_pred -----HhHHHHHHHhccCCch--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 1123566777787765 6888888887776643 3344444333 33335565555444333
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.15 E-value=2.3e-05 Score=63.17 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=72.0
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHccCCC-----------ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh------
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------ 101 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~------ 101 (500)
.++.|++.+.++++.+|..++++|+.+... ..++.|.++|.++ ++.++..++.+|+.+...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHHHH
Confidence 567777777777788888888887777432 6788888888887 788888888888887532
Q ss_pred -----hhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 102 -----SSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 102 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+.++.|.+++.+++..++..+.++|.++.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 35788999999999999999999998864
No 68
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.007 Score=59.54 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=67.6
Q ss_pred hhHHHHHHHhc-------CCCHHHHHHHHHHHh---ccCCCccHHHHHHHhhc--CCCCHHHHHHHHHHHhhcCC-----
Q psy10052 338 TAIQCISEAFA-------DKSALLKHELAYCLG---QMKDSDANDILRQVLED--KSQEPMVRHEAAEALGAIGD----- 400 (500)
Q Consensus 338 ~~~~~L~~~l~-------~~~~~vr~~a~~aL~---~l~~~~~~~~L~~~l~~--~~~~~~vR~~a~~aL~~~~~----- 400 (500)
+.+|.|+++|. +++|.+-++|..+|- +........+.+..++. .+++|.-|.+|+.|+|.+-+
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 45677777764 235666666666554 34444455545544432 22479999999999998743
Q ss_pred ------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 401 ------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 401 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
++++|.++....|+.-.|...++|++++|...-.
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 3577788888889999999999999999986543
No 69
>KOG0212|consensus
Probab=98.08 E-value=0.001 Score=65.03 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=44.8
Q ss_pred hhHHHHHhhccCCCHhHHHHHHHHHhccC----------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhc----C----
Q psy10052 191 ESTLALTEGLSHGSSLYRHEIAFVLGQMQ----------NPSSIPALTSALEDQTQNEMVRHECAEALGAI----A---- 252 (500)
Q Consensus 191 ~~i~~l~~~L~~~~~~vr~~a~~aL~~~~----------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~----~---- 252 (500)
+.++.+...+...++..|...+.++.-+. -+...+-|..+|.| .+++||..+-.+++.+ .
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD--~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD--SSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34444444444555566665555554332 12344555555555 3455664444433321 1
Q ss_pred ---CchHHHHHHHhhcCCcHHHHHHHHHHhhh
Q psy10052 253 ---TPECYDVLRKYLSDEKVVVRQSCEIALDM 281 (500)
Q Consensus 253 ---~~~~~~~L~~~l~~~~~~vr~~a~~al~~ 281 (500)
.++.++.+..-+.++++.++..|+..+..
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQE 276 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHH
Confidence 12345556666666666666666555543
No 70
>KOG4535|consensus
Probab=98.06 E-value=0.0027 Score=61.01 Aligned_cols=292 Identities=15% Similarity=0.104 Sum_probs=153.2
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHHcCCC---------hhhHHHHHhhccCCCHhHHHHHHHHHhccCCC-------C---
Q psy10052 162 KLKEILLNENEDLFMRYKAMFKLRDINS---------VESTLALTEGLSHGSSLYRHEIAFVLGQMQNP-------S--- 222 (500)
Q Consensus 162 ~L~~~l~d~~~~~~~r~~A~~~L~~~~~---------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~-------~--- 222 (500)
....++...-....+|..+++.|.-... -+....+...+.+..|.+...+...+.+++.. +
T Consensus 257 ~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k 336 (728)
T KOG4535|consen 257 DAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTK 336 (728)
T ss_pred hHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 3344443322222377777666543321 13334455566778888888887777554411 0
Q ss_pred ---cHHHHHH---------HhhccCCCHHHHHHHHHHHhhcCCc----------hHHHHHHHhhcC-CcHHHHHHHHHHh
Q psy10052 223 ---SIPALTS---------ALEDQTQNEMVRHECAEALGAIATP----------ECYDVLRKYLSD-EKVVVRQSCEIAL 279 (500)
Q Consensus 223 ---~i~~L~~---------~l~~~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~~-~~~~vr~~a~~al 279 (500)
....+.. ...|. ..+..+..++.++.+++.. ...+.+.....| ++..++.+|.+++
T Consensus 337 ~~~q~~~fw~~~l~~p~~~~~YDs-~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~ 415 (728)
T KOG4535|consen 337 APDQRAPFWTMMLNGPLPRALYDS-EHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRAL 415 (728)
T ss_pred chhhhccHHHHHccCCChhhhhhh-cCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhc
Confidence 0010111 11121 2344567777777777642 123344433333 3556777888877
Q ss_pred hhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHH
Q psy10052 280 DMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELA 359 (500)
Q Consensus 280 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~ 359 (500)
+-+.-+.+....... .....+.+...+.+.. +..|..++++++.+. .+|-++-+.++..+.
T Consensus 416 ~VyVLHp~lr~d~~f--------v~~aa~~il~sl~d~~--ln~r~KaawtlgnIT---------dAL~~~~Ps~~s~~e 476 (728)
T KOG4535|consen 416 GVYVLHPCLRQDVIF--------VADAANAILMSLEDKS--LNVRAKAAWSLGNIT---------DALIVNMPTPDSFQE 476 (728)
T ss_pred eeEEeccchhhhHHH--------HHHHHHHHHHHhhhHh--HhHHHHHHHHhhhhH---------HHHHcCCCCchHHHH
Confidence 744333221110000 0111223333343332 446778888777653 334444455555555
Q ss_pred HHHhccCCCccHHHHHHHhhc-CCCCHHHHHHHHHHHhhcCC----------ccHHHH-HHHhh----cCCCHhHHHHHH
Q psy10052 360 YCLGQMKDSDANDILRQVLED-KSQEPMVRHEAAEALGAIGD----------KSSISI-LEKYA----QDPVKEVSETCY 423 (500)
Q Consensus 360 ~aL~~l~~~~~~~~L~~~l~~-~~~~~~vR~~a~~aL~~~~~----------~~~~~~-L~~~l----~d~~~~vr~~A~ 423 (500)
+..|.+ +..++..... .-...+||..++++||++-. .+.++. ..+++ -...-.||..|+
T Consensus 477 R~sg~l-----l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaC 551 (728)
T KOG4535|consen 477 RFSGLL-----LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNAC 551 (728)
T ss_pred HHHHHH-----HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHH
Confidence 555433 1222222111 11257899999999988531 011111 11111 234667999999
Q ss_pred HHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcCChhh
Q psy10052 424 LALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVES 492 (500)
Q Consensus 424 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g~~~~ 492 (500)
.+++++=+... ....+++| .+...+.|..++. .+..+.+|.+|+-+|.--|.+|.
T Consensus 552 ya~gNLfkn~a---~~lq~~~w----------A~~~F~~L~~Lv~-~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 552 YAMGNLFKNPA---LPLQTAPW----------ASQAFNALTSLVT-SCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred HHHHHhhcCcc---ccccCCCc----------hHHHHHHHHHHHH-HhccceEeehhhhhhcCCCCccc
Confidence 99999855321 11223444 2478888888775 67778899999999999887764
No 71
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.05 E-value=0.00052 Score=62.60 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=118.6
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHhhcCC----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHH
Q psy10052 223 SIPALTSALEDQTQNEMVRHECAEALGAIAT----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQY 292 (500)
Q Consensus 223 ~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~ 292 (500)
.+..|+.+|+.. .+|.++..+..+++.... -++++.+..++.++++.+|..+..++..+..........
T Consensus 13 ~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLEST-EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 345566666543 356666666666665432 246888888999999999999999988775544332111
Q ss_pred HHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC--------hhhHHHHHHHhcCCCHHHHHHHHHHHhc
Q psy10052 293 ADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG--------KTAIQCISEAFADKSALLKHELAYCLGQ 364 (500)
Q Consensus 293 ~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 364 (500)
. ..++.+.+.......+-.+...+++.|..+.. ...++.++.+|...+..+|..+.+.|.+
T Consensus 92 k-----------~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 92 K-----------MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred H-----------HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 11223333222222222466778888877643 2357778889999999999999999988
Q ss_pred cCCC----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------------------------ccHHHHHH
Q psy10052 365 MKDS----------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------------------------KSSISILE 408 (500)
Q Consensus 365 l~~~----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------------------------~~~~~~L~ 408 (500)
+... .+...++.++... ++..+-..++....++.. ......|.
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~ 239 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ 239 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence 8653 3566777777543 366777777777776631 12445566
Q ss_pred HhhcCCCHhHHHH
Q psy10052 409 KYAQDPVKEVSET 421 (500)
Q Consensus 409 ~~l~d~~~~vr~~ 421 (500)
.+..++|++||..
T Consensus 240 ~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 240 ALANHPDPEVKEQ 252 (254)
T ss_pred HHHcCCCHHHhhh
Confidence 6667778887764
No 72
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=98.04 E-value=0.00037 Score=73.59 Aligned_cols=235 Identities=13% Similarity=0.052 Sum_probs=147.1
Q ss_pred chHHHHHHHccCC--CHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhc---CChhhHHHHHHHhc
Q psy10052 38 TAIQCISEAFADE--SALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAI---GDKSSISILEKYAQ 112 (500)
Q Consensus 38 ~~~~~L~~~l~~~--~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~---~~~~~~~~L~~~l~ 112 (500)
+.+..+.+-+... ....|.....+|...|...++..+.+.+....-........+..|... .+.+.+..+..+++
T Consensus 362 ~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~ 441 (618)
T PF01347_consen 362 EDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAK 441 (618)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Confidence 3455555555444 678999999999999999999999999988632222233333333333 34466777777775
Q ss_pred C----CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhc--CCCcCHHHHHHHHHHHHc
Q psy10052 113 D----PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILL--NENEDLFMRYKAMFKLRD 186 (500)
Q Consensus 113 d----~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~--d~~~~~~~r~~A~~~L~~ 186 (500)
. .++.++..|+.+++.+-........ ......+......+..++.+...+. ....+...+..++.+|++
T Consensus 442 ~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN 516 (618)
T PF01347_consen 442 SPKVKNSPYLRETALLSLGSLVHKYCVNSD-----SAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGN 516 (618)
T ss_dssp -HHHHT-HHHHHHHHHHHHHHHHHHHTT----------------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CccccCChhHHHHHHHHHHHHhCceeeccc-----ccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhc
Confidence 4 3578999999999887543222100 0000001011111445666666654 123455678999999999
Q ss_pred CCChhhHHHHHhhccCC---CHhHHHHHHHHHhccCC---CCcHHHHHHHhhccCCCHHHHHHHHHHHhhc-CCchHHHH
Q psy10052 187 INSVESTLALTEGLSHG---SSLYRHEIAFVLGQMQN---PSSIPALTSALEDQTQNEMVRHECAEALGAI-ATPECYDV 259 (500)
Q Consensus 187 ~~~~~~i~~l~~~L~~~---~~~vr~~a~~aL~~~~~---~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~-~~~~~~~~ 259 (500)
.|.+..++.+...+.+. +..+|..|+++|.++.. ..+.+.|..++.+..+++++|.+|...|-.. .+...+..
T Consensus 517 ~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~ 596 (618)
T PF01347_consen 517 LGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQR 596 (618)
T ss_dssp HT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHH
T ss_pred cCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999999988776 78899999999996642 2567888899988888999999999999887 44456677
Q ss_pred HHHhhc-CCcHHHHHHHHH
Q psy10052 260 LRKYLS-DEKVVVRQSCEI 277 (500)
Q Consensus 260 L~~~l~-~~~~~vr~~a~~ 277 (500)
+...+. +++..|+.....
T Consensus 597 i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 597 IAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHH
Confidence 777664 556777765543
No 73
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=98.03 E-value=0.00078 Score=70.37 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=151.3
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHH-Hh--cCChhhHHHHHHHhcCC
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEAL-GA--IGDKSSISILEKYAQDP 114 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL-~~--~~~~~~~~~L~~~l~d~ 114 (500)
+.+..+.+-+.......|.-...+|...|+..++..+.+.+....-.......++-.+ .. ..++..+..+..+++++
T Consensus 326 e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~ 405 (574)
T smart00638 326 EQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESP 405 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCc
Confidence 3444444444332267888889999999999999999999988642222233333332 22 34567888888888764
Q ss_pred ----CHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcC--CCcCHHHHHHHHHHHHcCC
Q psy10052 115 ----VKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLN--ENEDLFMRYKAMFKLRDIN 188 (500)
Q Consensus 115 ----~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d--~~~~~~~r~~A~~~L~~~~ 188 (500)
++.++..|..+++.+-....... +..+....+..++.+.+.|.+ ...+...+...+.+|++.|
T Consensus 406 ~~~~~~~l~~sa~l~~~~lv~~~c~~~-----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 406 EVQKQPYLRESALLAYGSLVRRYCVNT-----------PSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhcCC-----------CCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 57799999999988754221110 000000002234555554422 1234446788999999999
Q ss_pred ChhhHHHHHhhcc-C--CCHhHHHHHHHHHhcc---CCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhc-CCchHHHHHH
Q psy10052 189 SVESTLALTEGLS-H--GSSLYRHEIAFVLGQM---QNPSSIPALTSALEDQTQNEMVRHECAEALGAI-ATPECYDVLR 261 (500)
Q Consensus 189 ~~~~i~~l~~~L~-~--~~~~vr~~a~~aL~~~---~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~-~~~~~~~~L~ 261 (500)
.+..+..+...+. + .+..+|..|+.+|.++ ......+.|..++.+..+++++|.+|...|-.. .+...+..+.
T Consensus 475 ~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia 554 (574)
T smart00638 475 HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIA 554 (574)
T ss_pred ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999988886 3 4578999999999866 345567788899888888999999999999887 4445566676
Q ss_pred Hhhc-CCcHHHHHHH
Q psy10052 262 KYLS-DEKVVVRQSC 275 (500)
Q Consensus 262 ~~l~-~~~~~vr~~a 275 (500)
..+. +++..|+...
T Consensus 555 ~~l~~E~~~QV~sfv 569 (574)
T smart00638 555 ELLNKEPNLQVASFV 569 (574)
T ss_pred HHHhhcCcHHHHHHh
Confidence 6664 5567776544
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.00 E-value=0.0018 Score=63.96 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=58.9
Q ss_pred HHHHhc-CCcchHHHHHHHccCCCHHHHHHHHHHHH----ccCCCcc--------HHHHHHHhhccCCCHHHHH----HH
Q psy10052 29 FTLKNI-GGKTAIQCISEAFADESALLKHELAYCLG----QMKDSDA--------NDILRQVLEDKSQEPMVRH----EA 91 (500)
Q Consensus 29 ~~L~~~-~~~~~~~~L~~~l~~~~~~vR~~a~~~L~----~~~~~~~--------~~~L~~~L~~~~~d~~vr~----~a 91 (500)
-.|++. |++..+..+++.++|+....|..++.+.. .+|.... +..+..++++.+....+-. ..
T Consensus 511 vilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv 590 (975)
T COG5181 511 VILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTV 590 (975)
T ss_pred HHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccce
Confidence 445554 45678889999999888777776555533 3443322 3333344443310111100 00
Q ss_pred HHHHHhcCC---hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 92 AEALGAIGD---KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 92 ~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
.-+++-.+. +..+..++.+|+++.|.||..|+...+.+.
T Consensus 591 ~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~ 632 (975)
T COG5181 591 LVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLA 632 (975)
T ss_pred eeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 112222222 346677888999999999999998877654
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.99 E-value=6.5e-05 Score=60.46 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=71.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC-------
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD------- 400 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~------- 400 (500)
.++.+++.+.+.++.+|..++.+|+.+... ..++.|.+++.+. ++.++..++.+|+++..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHHHH
Confidence 466777777777777777777777777653 5788888888876 78899999999888753
Q ss_pred ----ccHHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 401 ----KSSISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 401 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
.+.++.|.+++++.+..++..++++|..+-
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 236788899999989999999999998763
No 76
>KOG1077|consensus
Probab=97.97 E-value=0.0097 Score=59.98 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCc---chHHHHHHHccCCCHHHHHHHHHHHHccCCCcc----HHHHHHHhhccCCCHHHHHHHHHHH
Q psy10052 23 ERFRALFTLKNIGGK---TAIQCISEAFADESALLKHELAYCLGQMKDSDA----NDILRQVLEDKSQEPMVRHEAAEAL 95 (500)
Q Consensus 23 ~R~~A~~~L~~~~~~---~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~L~~~~~d~~vr~~a~~aL 95 (500)
+-+..+..|-+...+ ..+..+.+-|.+.|+....-|+..++.+|..+. .+.+-++|-..+....||..|+-+|
T Consensus 93 IGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALcl 172 (938)
T KOG1077|consen 93 IGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCL 172 (938)
T ss_pred HhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHH
Confidence 444445444443321 223333344455666666777777777775322 2334455555432456777776666
Q ss_pred HhcC--Ch------hhHHHHHHHhcCCCHHHHHHHHHHH
Q psy10052 96 GAIG--DK------SSISILEKYAQDPVKEVSETCYLAL 126 (500)
Q Consensus 96 ~~~~--~~------~~~~~L~~~l~d~~~~vr~~a~~aL 126 (500)
-++- .+ +....++.+|.|.+-.|-.++..-+
T Consensus 173 L~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi 211 (938)
T KOG1077|consen 173 LRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLI 211 (938)
T ss_pred HHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHH
Confidence 5431 11 3456677777777766654444433
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.012 Score=57.94 Aligned_cols=259 Identities=15% Similarity=0.064 Sum_probs=138.8
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCC---------------------cchHH-HHHHHccCCCHHHHHHHHHHHHccCC
Q psy10052 10 IGQVLKDSSKPLKERFRALFTLKNIGG---------------------KTAIQ-CISEAFADESALLKHELAYCLGQMKD 67 (500)
Q Consensus 10 L~~~L~~~~~~~~~R~~A~~~L~~~~~---------------------~~~~~-~L~~~l~~~~~~vR~~a~~~L~~~~~ 67 (500)
|.+.|.+.+.....|..|...|.+--. .+.++ ..+..|+++.|..-..|+..++.+..
T Consensus 44 l~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~ 123 (858)
T COG5215 44 LVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR 123 (858)
T ss_pred HHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 444554444333577777777765321 01222 34457788888888888888877642
Q ss_pred ----CccHHHHHHHhh----ccCCCHHHHHHHHHHHHhcCChhhHHHHHH-----------H-h-cCCCHHHHHHHHHHH
Q psy10052 68 ----SDANDILRQVLE----DKSQEPMVRHEAAEALGAIGDKSSISILEK-----------Y-A-QDPVKEVSETCYLAL 126 (500)
Q Consensus 68 ----~~~~~~L~~~L~----~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~-----------~-l-~d~~~~vr~~a~~aL 126 (500)
...+|.|.+.+. ++ +...+...++.++|.+.....-+.|.+ . + +.++..||.++..+|
T Consensus 124 ~Elp~~~wp~lm~~mv~nvg~e-qp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL 202 (858)
T COG5215 124 MELPNSLWPGLMEEMVRNVGDE-QPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKAL 202 (858)
T ss_pred hhCccccchHHHHHHHHhcccc-CchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 234555555443 33 245678888999998865322112222 1 1 567789999999999
Q ss_pred HH-hchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh----------hhH-H
Q psy10052 127 KR-IQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV----------EST-L 194 (500)
Q Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~----------~~i-~ 194 (500)
.. +-... +.|...... +.......+.. ..++..+...|..+|.++-.- .++ .
T Consensus 203 ~dsl~fv~---------~nf~~E~er-----Ny~mqvvceat--q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~a 266 (858)
T COG5215 203 MDSLMFVQ---------GNFCYEEER-----NYFMQVVCEAT--QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAA 266 (858)
T ss_pred HHHHHHHH---------Hhhcchhhh-----chhheeeehhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 22110 001100000 11122233334 234556777777777765321 122 2
Q ss_pred HHHhhccCCCHhHHHHHHHHHhccCC---------------------------CCcHHHHHHHhhccC-----CCHHHHH
Q psy10052 195 ALTEGLSHGSSLYRHEIAFVLGQMQN---------------------------PSSIPALTSALEDQT-----QNEMVRH 242 (500)
Q Consensus 195 ~l~~~L~~~~~~vr~~a~~aL~~~~~---------------------------~~~i~~L~~~l~~~~-----~~~~vr~ 242 (500)
...+.+++++..|...+++-..-+.. .+.+|.|+.+|...+ +++.+-.
T Consensus 267 lt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sm 346 (858)
T COG5215 267 LTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSM 346 (858)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhh
Confidence 23335577888888888776532221 124666777775421 1233444
Q ss_pred HHHHHHhhcC---Cc----hHHHHHHHhhcCCcHHHHHHHHHHhhhcccc
Q psy10052 243 ECAEALGAIA---TP----ECYDVLRKYLSDEKVVVRQSCEIALDMCDYE 285 (500)
Q Consensus 243 ~a~~aL~~~~---~~----~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~ 285 (500)
+|...|--+. .. ..+..+..-+++++|.-|.+++-|+|.+..+
T Consensus 347 aA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 347 AASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred hHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 4444443221 11 1334444556677777777777777755443
No 78
>KOG0212|consensus
Probab=97.95 E-value=0.0079 Score=59.10 Aligned_cols=224 Identities=18% Similarity=0.152 Sum_probs=121.3
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHccCCCHHHHHHHHHHHHcc-C---C----
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGG----------KTAIQCISEAFADESALLKHELAYCLGQM-K---D---- 67 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~-~---~---- 67 (500)
.++..+..+.++|.. +|+.|-+.|.+++. ++..+.|.++..|++..||..| +.|-++ . .
T Consensus 85 iv~Pv~~cf~D~d~~--vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQ--VRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESAS 161 (675)
T ss_pred hhHHHHHhccCccce--eeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccccc
Confidence 345556666777765 78888777777651 2455666666677777776543 333222 1 1
Q ss_pred ----CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhc
Q psy10052 68 ----SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 133 (500)
Q Consensus 68 ----~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 133 (500)
+..+|.|.+-+... +|.+|...+..+..+.. +...+.|...|.|+.+.||..+-.+++.+-.
T Consensus 162 tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~-- 237 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA-- 237 (675)
T ss_pred ccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--
Confidence 12233333333444 67777777777765532 2455667777777777777776666655321
Q ss_pred cchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHH
Q psy10052 134 EEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAF 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~ 213 (500)
+.-.+++. + ..++.++.++..+.++.+.++..|+.
T Consensus 238 -------------------------------eI~s~P~s---~-----------d~~~~i~vlv~~l~ss~~~iq~~al~ 272 (675)
T KOG0212|consen 238 -------------------------------EIRSSPSS---M-----------DYDDMINVLVPHLQSSEPEIQLKALT 272 (675)
T ss_pred -------------------------------HHhcCccc---c-----------CcccchhhccccccCCcHHHHHHHHH
Confidence 11011100 0 12345666777777777777777766
Q ss_pred HHhcc---CCCCcH-------HHHHHHhhccCCCHHHHHHHHHH---Hh----------hcCCchHHHHHHHhhcCCcHH
Q psy10052 214 VLGQM---QNPSSI-------PALTSALEDQTQNEMVRHECAEA---LG----------AIATPECYDVLRKYLSDEKVV 270 (500)
Q Consensus 214 aL~~~---~~~~~i-------~~L~~~l~~~~~~~~vr~~a~~a---L~----------~~~~~~~~~~L~~~l~~~~~~ 270 (500)
++..+ +.+..+ ..++.++.+++. ...+..+... |- .+.-...++.+.+++++....
T Consensus 273 Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~-~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~ 351 (675)
T KOG0212|consen 273 WIQEFVKIPGRDLLLYLSGILTAILPCLSDTEE-MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREE 351 (675)
T ss_pred HHHHHhcCCCcchhhhhhhhhhhcccCCCCCcc-ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHH
Confidence 66443 222223 333344444321 1122222111 10 111234678888888888888
Q ss_pred HHHHHHHHhhhc
Q psy10052 271 VRQSCEIALDMC 282 (500)
Q Consensus 271 vr~~a~~al~~l 282 (500)
.|.++...+..+
T Consensus 352 tri~~L~Wi~~l 363 (675)
T KOG0212|consen 352 TRIAVLNWIILL 363 (675)
T ss_pred HHHHHHHHHHHH
Confidence 888777666544
No 79
>KOG1943|consensus
Probab=97.91 E-value=0.03 Score=59.39 Aligned_cols=413 Identities=16% Similarity=0.117 Sum_probs=213.8
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHcc-CCCHHHHHHHHHHHHccCC---------
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGG-------KTAIQCISEAFA-DESALLKHELAYCLGQMKD--------- 67 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-------~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~--------- 67 (500)
.-++.|.+.|.|.|.. +|+.|++.++++.. ..++...++++. -++...=..++-+|++++.
T Consensus 341 ~vie~Lls~l~d~dt~--VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTV--VRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHhccCCcch--hhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 5677888999999986 99999999998752 246666677664 2223344477888887743
Q ss_pred CccHHHHHHHhhccC------CCHHHHHHH---HHHHHhcCChhhHHH---------HHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 68 SDANDILRQVLEDKS------QEPMVRHEA---AEALGAIGDKSSISI---------LEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 68 ~~~~~~L~~~L~~~~------~d~~vr~~a---~~aL~~~~~~~~~~~---------L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
+..+|.+++.|.=+. .-..||-+| ++++++--.+..+.+ |...+-|++-.+|.+|..|+...
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN 498 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence 356677777665331 013477666 456666555443332 33355899999999999998643
Q ss_pred -chhccchhh-ccc-cCcCCCCCCCCC--------CC-CcccHHHHHHHh-cC--CCcCHHHHHHHHHHHHcCC------
Q psy10052 130 -QFVTEEDKQ-KDT-GNIYGSVDPTPP--------LD-DVSDINKLKEIL-LN--ENEDLFMRYKAMFKLRDIN------ 188 (500)
Q Consensus 130 -~~~~~~~~~-~~~-~~~~~~~~~~~~--------~~-~~~~~~~L~~~l-~d--~~~~~~~r~~A~~~L~~~~------ 188 (500)
|.....+.= .+- .-.|.++..... ++ -+.....+.+.+ .+ -+.|..+|..+..+|.++.
T Consensus 499 VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~ 578 (1133)
T KOG1943|consen 499 VGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY 578 (1133)
T ss_pred hccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh
Confidence 221111000 000 000000000000 00 012222333322 21 3678888999999888743
Q ss_pred -ChhhHHHHHhhccCCCHhHHHHHHHHHhccC----CCC----------------cHHHHH-HHhhccCCCHHHHHHHHH
Q psy10052 189 -SVESTLALTEGLSHGSSLYRHEIAFVLGQMQ----NPS----------------SIPALT-SALEDQTQNEMVRHECAE 246 (500)
Q Consensus 189 -~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~----~~~----------------~i~~L~-~~l~~~~~~~~vr~~a~~ 246 (500)
....++.++......+...|+....+.|.+- .-+ .++.+. ..+..+ ...-+|.....
T Consensus 579 ~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg-~~~lmr~~~~~ 657 (1133)
T KOG1943|consen 579 LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG-QGTLMRQATLK 657 (1133)
T ss_pred hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc-hHHHHHHHHHH
Confidence 2245566666666677888876655554321 000 011111 111110 01123444444
Q ss_pred HHhhcCCch-------HHH----HHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChH-HHHHHHHHh
Q psy10052 247 ALGAIATPE-------CYD----VLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEE-KILLIGQVL 314 (500)
Q Consensus 247 aL~~~~~~~-------~~~----~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~l~~~l 314 (500)
.+-.+.... ... .+...+.+++ .+|..+..+++.+.+..- ..+...+. .+..+...+
T Consensus 658 ~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~----------~~d~~~~~~li~~~ls~~ 726 (1133)
T KOG1943|consen 658 FIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYV----------KADEGEEAPLITRYLSRL 726 (1133)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHH----------hcCchhhhHHHHHHHHHh
Confidence 443333211 111 2222333444 778888888775543211 11111111 122233333
Q ss_pred hcCCCCHHHHHHHHHHHHhcCC--------hhhHHHHHHHhcCC-CHHHHHHHHHHHhccCC-----------CccHHHH
Q psy10052 315 KDSSKPLKERFRALFTLKNIGG--------KTAIQCISEAFADK-SALLKHELAYCLGQMKD-----------SDANDIL 374 (500)
Q Consensus 315 ~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~l~~-----------~~~~~~L 374 (500)
.+.+. ..+|..-..+++.... +.....++...... ...-|...+.++.+... .+....|
T Consensus 727 ~~~~~-~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~L 805 (1133)
T KOG1943|consen 727 TKCSE-ERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETL 805 (1133)
T ss_pred cCchH-HHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 33322 2456555556655441 11222223333333 56677777777766543 2357778
Q ss_pred HHHhhcCCC------CHHHHHHHHHHHhhcCC---------ccHHHHH----HHhhcCCCHhHHHHHHHHHHHhhhh
Q psy10052 375 RQVLEDKSQ------EPMVRHEAAEALGAIGD---------KSSISIL----EKYAQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 375 ~~~l~~~~~------~~~vR~~a~~aL~~~~~---------~~~~~~L----~~~l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
++.+.|-.. ...||.+|+.++..+.. ++.+..+ .+..-++-...|.-|+.++.++-..
T Consensus 806 L~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 806 LNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 888865221 26899999999987642 2233333 3333456666788999999888765
No 80
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.76 E-value=7e-05 Score=50.86 Aligned_cols=45 Identities=31% Similarity=0.351 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 385 PMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 385 ~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
|.||..|+.+||++.. ++.++.|..+++|+++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5677777777776542 35677777788887888888888888764
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.73 E-value=9.8e-05 Score=50.11 Aligned_cols=44 Identities=30% Similarity=0.302 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 86 MVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 86 ~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
.||..|+++||.+.. +..++.|..+|+|+++.||..|+.+|++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 455555555554431 24566677777777777777777777754
No 82
>KOG1240|consensus
Probab=97.68 E-value=0.0012 Score=70.02 Aligned_cols=202 Identities=16% Similarity=0.121 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHccCC--------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC--------------hhhHHHHH
Q psy10052 51 SALLKHELAYCLGQMKD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------------KSSISILE 108 (500)
Q Consensus 51 ~~~vR~~a~~~L~~~~~--------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~--------------~~~~~~L~ 108 (500)
....|..|++.|..+.. ...+|.++.++.|+ ++.||..|+++|.++-. .-..|.|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds--~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS--EADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc--hHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 34556666666655421 34567777788877 67788888877776421 12356666
Q ss_pred HHhcC-CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHH--HhcCCCcC--HHHHH-HHHH
Q psy10052 109 KYAQD-PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKE--ILLNENED--LFMRY-KAMF 182 (500)
Q Consensus 109 ~~l~d-~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~l~d~~~~--~~~r~-~A~~ 182 (500)
.++.| ....||.+-+..|+.+......-. .....+.. .+.+++.. +..+. .-+.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFl--------------------e~~q~~~~~g~~n~~nset~~~~~~~~~~~ 573 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFL--------------------ELTQELRQAGMLNDPNSETAPEQNYNTELQ 573 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHH--------------------HHHHHHHhcccccCcccccccccccchHHH
Confidence 67777 556677777777776653110000 00000000 01111110 00000 0011
Q ss_pred HHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccC--------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhh----
Q psy10052 183 KLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQ--------NPSSIPALTSALEDQTQNEMVRHECAEALGA---- 250 (500)
Q Consensus 183 ~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~--------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~---- 250 (500)
+|.. ..-.....+|.|+++.||+..++.|+.+. ++-+++.|+.+|.| .|+.+|.+-.+.+..
T Consensus 574 ~L~~----~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLND--kDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 574 ALHH----TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLND--KDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHH----HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcC--ccHHHHHHHHhhccceEEE
Confidence 1111 11122333556666777776666654332 33456677777766 356677666666542
Q ss_pred cCC----chHHHHHHHhhcCCcHHHHHHHHHHhh
Q psy10052 251 IAT----PECYDVLRKYLSDEKVVVRQSCEIALD 280 (500)
Q Consensus 251 ~~~----~~~~~~L~~~l~~~~~~vr~~a~~al~ 280 (500)
+|. +-.+|.|.+.+.|..+.|-..++.++.
T Consensus 648 VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls 681 (1431)
T KOG1240|consen 648 VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLS 681 (1431)
T ss_pred EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHH
Confidence 121 224667777777777766666666654
No 83
>KOG1240|consensus
Probab=97.55 E-value=0.004 Score=66.33 Aligned_cols=223 Identities=17% Similarity=0.173 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhcCC--------cchHHHHHHHccCCCHHHHHHHHHHHHcc----CC----------CccHHHHHHHhhc
Q psy10052 23 ERFRALFTLKNIGG--------KTAIQCISEAFADESALLKHELAYCLGQM----KD----------SDANDILRQVLED 80 (500)
Q Consensus 23 ~R~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~----~~----------~~~~~~L~~~L~~ 80 (500)
.+..|++.|..+.. +..+|.++-++.|+.+.||..|+..|.++ .+ +...|.|..++.|
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 68888888887652 24677888889999999999999998765 11 2345777777777
Q ss_pred cCCCHHHHHHHHHHHHhcCChh--hH---HHHHH--HhcCCCHH----HH-HHHHHHHHHhchhccchhhccccCcCCCC
Q psy10052 81 KSQEPMVRHEAAEALGAIGDKS--SI---SILEK--YAQDPVKE----VS-ETCYLALKRIQFVTEEDKQKDTGNIYGSV 148 (500)
Q Consensus 81 ~~~d~~vr~~a~~aL~~~~~~~--~~---~~L~~--~l~d~~~~----vr-~~a~~aL~~~~~~~~~~~~~~~~~~~~~~ 148 (500)
.+ ...||..-+..|+.+.... .+ ..+.. .+++++.. -+ ..-..+|.
T Consensus 519 ~~-~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--------------------- 576 (1431)
T KOG1240|consen 519 SS-AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH--------------------- 576 (1431)
T ss_pred Cc-cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH---------------------
Confidence 42 5779999999998876421 11 11111 13444432 00 00011111
Q ss_pred CCCCCCCCcccHHHH-HHHhcCCCcCHHHHHHHHHHHHc-------CCCh-hhHHHHHhhccCCCHhHHHHHHHHHhcc-
Q psy10052 149 DPTPPLDDVSDINKL-KEILLNENEDLFMRYKAMFKLRD-------INSV-ESTLALTEGLSHGSSLYRHEIAFVLGQM- 218 (500)
Q Consensus 149 ~~~~~~~~~~~~~~L-~~~l~d~~~~~~~r~~A~~~L~~-------~~~~-~~i~~l~~~L~~~~~~vr~~a~~aL~~~- 218 (500)
..+... ..++.| +++.||.+-++.++. .+.. -.+..|+.+|+|.++.+|.+....+..+
T Consensus 577 ---------~~V~~~v~sLlsd--~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs 645 (1431)
T KOG1240|consen 577 ---------HTVEQMVSSLLSD--SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS 645 (1431)
T ss_pred ---------HHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceE
Confidence 113333 344443 345678776666543 2222 3668888899999999998888877532
Q ss_pred ---C----CCCcHHHHHHHhhccCCCHHHHHHHHHHHhh------cCCchHH---HHHHHhhcCCcHHHHHHHHHHhh
Q psy10052 219 ---Q----NPSSIPALTSALEDQTQNEMVRHECAEALGA------IATPECY---DVLRKYLSDEKVVVRQSCEIALD 280 (500)
Q Consensus 219 ---~----~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~------~~~~~~~---~~L~~~l~~~~~~vr~~a~~al~ 280 (500)
| ++-.+|.|.+.|.|.. +.|...|+.+|.- +.....+ .....+|-.|+..+|..++.-+.
T Consensus 646 i~VG~rs~seyllPLl~Q~ltD~E--E~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~ 721 (1431)
T KOG1240|consen 646 IFVGWRSVSEYLLPLLQQGLTDGE--EAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIA 721 (1431)
T ss_pred EEEeeeeHHHHHHHHHHHhccCcc--hhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHH
Confidence 2 3346788888888853 5677777766632 2233333 33344778999999998876664
No 84
>KOG1943|consensus
Probab=97.51 E-value=0.16 Score=54.18 Aligned_cols=406 Identities=14% Similarity=0.075 Sum_probs=203.5
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC-------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh---------
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD-------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK--------- 101 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~--------- 101 (500)
..++.|...++|.|..||..|+..+|++.. .+++...++++.-- +++..-..++-+|++++..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~-e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPA-EDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcC-CchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 467778888899999999999999999843 23444445533322 2456677889999887642
Q ss_pred hhHHHHHHHhcCC--------CHHHHHHHH---HHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCC
Q psy10052 102 SSISILEKYAQDP--------VKEVSETCY---LALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNE 170 (500)
Q Consensus 102 ~~~~~L~~~l~d~--------~~~vr~~a~---~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~ 170 (500)
+.+|.+++.+.=+ ...||.+|. ||+++--.+....+. ...-+..-|+..+-|.
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~----------------l~~L~s~LL~~AlFDr 483 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPV----------------LQSLASALLIVALFDR 483 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHH----------------HHHHHHHHHHHHhcCc
Confidence 5667777776322 246887665 455543322111100 0001122334445454
Q ss_pred CcCHHHHHHHHHHHHc-C---CCh-hhHHHHHhhccCCCHhHHHH----HHHHHhccCCCCcHHHHHH-Hhhc--cCCCH
Q psy10052 171 NEDLFMRYKAMFKLRD-I---NSV-ESTLALTEGLSHGSSLYRHE----IAFVLGQMQNPSSIPALTS-ALED--QTQNE 238 (500)
Q Consensus 171 ~~~~~~r~~A~~~L~~-~---~~~-~~i~~l~~~L~~~~~~vr~~----a~~aL~~~~~~~~i~~L~~-~l~~--~~~~~ 238 (500)
....|.+|..++-+ + ++- ..++ |+...+.-+-..|.. .+..+..+ ++....+.+ ++.+ ...++
T Consensus 484 --evncRRAAsAAlqE~VGR~~n~p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~--~~y~~~~f~~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 484 --EVNCRRAASAALQENVGRQGNFPHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEF--SGYREPVFNHLLTKKVCHWDV 558 (1133)
T ss_pred --hhhHhHHHHHHHHHHhccCCCCCCchh-hhhhcchhhhhhhhhHHHHHhHHHHhh--hhHHHHHHHHHHhcccccccH
Confidence 44578877666543 2 221 1222 222111111112221 11222222 222333332 2221 11468
Q ss_pred HHHHHHHHHHhhcCC-------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHH-
Q psy10052 239 MVRHECAEALGAIAT-------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLI- 310 (500)
Q Consensus 239 ~vr~~a~~aL~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l- 310 (500)
.+|..++++|..+.. ...++.+......++...|..+..+.+.+-......- + .+..-.+..+..+
T Consensus 559 ~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~-----~~~~l~e~~i~~l~ 632 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-P-----VIKGLDENRIAGLL 632 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-h-----hhhhhHHHHhhhhh
Confidence 899999999987432 2356677776667778888877777664432111000 0 0000001111111
Q ss_pred ------HHHhhcCCCCHHHHHHHHHHHHhcCChh-------h---HH-HHHHHhcCCCHHHHHHHHHHHhccC------C
Q psy10052 311 ------GQVLKDSSKPLKERFRALFTLKNIGGKT-------A---IQ-CISEAFADKSALLKHELAYCLGQMK------D 367 (500)
Q Consensus 311 ------~~~l~~~~~~~~~r~~a~~~L~~~~~~~-------~---~~-~L~~~l~~~~~~vr~~a~~aL~~l~------~ 367 (500)
...-.........|......+.++...+ . .. .+.+.+.+.+ .+|.+++++++.+. +
T Consensus 633 ~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d 711 (1133)
T KOG1943|consen 633 SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKAD 711 (1133)
T ss_pred hhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcC
Confidence 0000000000011222222222222111 1 11 2223333344 78888998888763 2
Q ss_pred C-c---cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc----cHHHHHHHhh-----cCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 368 S-D---ANDILRQVLEDKSQEPMVRHEAAEALGAIGDK----SSISILEKYA-----QDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 368 ~-~---~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~----~~~~~L~~~l-----~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
+ . .+...+..+.+.+ +..+|.....+++.+... ...+.+.++. .|..+.-|...+.++.++-..-.
T Consensus 712 ~~~~~~li~~~ls~~~~~~-~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~ 790 (1133)
T KOG1943|consen 712 EGEEAPLITRYLSRLTKCS-EERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVT 790 (1133)
T ss_pred chhhhHHHHHHHHHhcCch-HHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2344444454443 688899999999987632 2223333332 34466778888888877644322
Q ss_pred cccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcC------CccHHHHHHHHHHhHhc
Q psy10052 435 EDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNE------NEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~r~~a~~al~~~ 487 (500)
... ++.-..+.+..|.+.+.|= |-+..||.+|+.++..+
T Consensus 791 ~~~--------------~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~ 835 (1133)
T KOG1943|consen 791 SLL--------------FSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSL 835 (1133)
T ss_pred Hhh--------------ccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhh
Confidence 100 0001246677777777542 44556999999999887
No 85
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.0044 Score=64.31 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=112.4
Q ss_pred HhHHHHHHh-hcCCCCCHHHHHHHHHHHHhc---CC--cchHHHHHHHccCCCHHHHHHHHHHHHcc---CCC---ccHH
Q psy10052 5 EKILLIGQV-LKDSSKPLKERFRALFTLKNI---GG--KTAIQCISEAFADESALLKHELAYCLGQM---KDS---DAND 72 (500)
Q Consensus 5 ~~~~~L~~~-L~~~~~~~~~R~~A~~~L~~~---~~--~~~~~~L~~~l~~~~~~vR~~a~~~L~~~---~~~---~~~~ 72 (500)
.++..+-.. |.+.+.. .|..|.+.+-.. |. +..++.+++.....|..+++-.-..|-.. ... .++.
T Consensus 18 ~~~~~~~sg~l~s~n~~--~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavN 95 (757)
T COG5096 18 DSVAALSSGRLESSNDY--KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVN 95 (757)
T ss_pred hHHhhhccccccccChH--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344455555 6666654 788888776542 33 24666777777788888887655544444 222 2456
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCChh----hHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCC
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIGDKS----SISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSV 148 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~ 148 (500)
.+.+=++|+ ++.+|..|++.++.++.+. .++.+.++++|+++.||..|+.|+.++-.... +.+..
T Consensus 96 ti~kDl~d~--N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--------~l~~~- 164 (757)
T COG5096 96 TIQKDLQDP--NEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--------DLYHE- 164 (757)
T ss_pred HHHhhccCC--CHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--------hhhhc-
Confidence 677777788 7999999999999999764 56788889999999999999999998753211 10100
Q ss_pred CCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh
Q psy10052 149 DPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV 190 (500)
Q Consensus 149 ~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~ 190 (500)
.+.+..+...+.|. ++.+...|+.+|..+...
T Consensus 165 --------~g~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 --------LGLIDILKELVADS--DPIVIANALASLAEIDPE 196 (757)
T ss_pred --------ccHHHHHHHHhhCC--CchHHHHHHHHHHHhchh
Confidence 22456666666554 556888899999988765
No 86
>KOG2025|consensus
Probab=97.24 E-value=0.04 Score=55.90 Aligned_cols=193 Identities=18% Similarity=0.078 Sum_probs=127.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCC-hHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q psy10052 256 CYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIP-EEKILLIGQVLKDSSKPLKERFRALFTLKNI 334 (500)
Q Consensus 256 ~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~ 334 (500)
.+-.+.+...+++..||..++.-+..+...... ++..- ..-...+...+.|..+. +|..|+.+|.+.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e----------idd~vfn~l~e~l~~Rl~Drep~--VRiqAv~aLsrl 153 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAE----------IDDDVFNKLNEKLLIRLKDREPN--VRIQAVLALSRL 153 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccc----------cCHHHHHHHHHHHHHHHhccCch--HHHHHHHHHHHH
Confidence 355566677788889999988888766542111 10000 01123555566666654 899999999988
Q ss_pred CC------hhhHHHHHHHhc-CCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHH-HhhcC-----Cc
Q psy10052 335 GG------KTAIQCISEAFA-DKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEA-LGAIG-----DK 401 (500)
Q Consensus 335 ~~------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~a-L~~~~-----~~ 401 (500)
.+ -.++..+..+++ |++++||.++...+. .++...|.+++...|- +..+|.-+..- |-++. -.
T Consensus 154 Q~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~--vdnsTlp~IveRarDV--~~anRrlvY~r~lpkid~r~lsi~ 229 (892)
T KOG2025|consen 154 QGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNIS--VDNSTLPCIVERARDV--SGANRRLVYERCLPKIDLRSLSID 229 (892)
T ss_pred hcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhc--cCcccchhHHHHhhhh--hHHHHHHHHHHhhhhhhhhhhhHH
Confidence 63 235667777775 889999999887774 4667899999999887 57777766544 34441 12
Q ss_pred cHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHH
Q psy10052 402 SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 481 (500)
Q Consensus 402 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~ 481 (500)
.-+-.+.+.++|.+..|+.++..+|.. +|... ...-+..|.+.|.-++.+ .++..+.
T Consensus 230 krv~LlewgLnDRe~sVk~A~~d~il~-~Wl~~---------------------~dgni~ElL~~ldvsnss-~vavk~l 286 (892)
T KOG2025|consen 230 KRVLLLEWGLNDREFSVKGALVDAILS-GWLRF---------------------SDGNILELLERLDVSNSS-EVAVKAL 286 (892)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHH-HHhhh---------------------ccccHHHHHHHhccccch-HHHHHHH
Confidence 345667778899999999999998876 22221 124455566666444443 5888888
Q ss_pred HHhHhc
Q psy10052 482 FKLRDI 487 (500)
Q Consensus 482 ~al~~~ 487 (500)
.||-++
T Consensus 287 ealf~~ 292 (892)
T KOG2025|consen 287 EALFSG 292 (892)
T ss_pred HHHHHH
Confidence 877763
No 87
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0018 Score=67.05 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=62.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc----hHHHHHHHccCCCHHHHHHHHHHHHccCC-------Cc-cHHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKT----AIQCISEAFADESALLKHELAYCLGQMKD-------SD-ANDI 73 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~----~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-------~~-~~~~ 73 (500)
+++.+.+-|.|+|+. +|..|++.|+.++.++ .++++.+++.|++++||..|+.++..+-. .. .+..
T Consensus 93 avNti~kDl~d~N~~--iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 93 AVNTIQKDLQDPNEE--IRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHHHhhccCCCHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 456667777777765 7788888777777543 45566677777777888777777776521 12 3455
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCCh
Q psy10052 74 LRQVLEDKSQEPMVRHEAAEALGAIGDK 101 (500)
Q Consensus 74 L~~~L~~~~~d~~vr~~a~~aL~~~~~~ 101 (500)
+..++.|+ ||.|.+.|+.+|..+...
T Consensus 171 l~~l~~D~--dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADS--DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCC--CchHHHHHHHHHHHhchh
Confidence 55666666 677777777777776654
No 88
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.07 E-value=0.014 Score=50.58 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHccC--C----CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------hh-hHHHHHHHhcCCCHH
Q psy10052 51 SALLKHELAYCLGQMK--D----SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------KS-SISILEKYAQDPVKE 117 (500)
Q Consensus 51 ~~~vR~~a~~~L~~~~--~----~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------~~-~~~~L~~~l~d~~~~ 117 (500)
+|.+|..++.++|.+. . +...+.+...|.|+ ++.||..|+..|..+-. .+ .+..++.++.|+++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 4667777777777542 1 23456777778877 78888888888776432 22 336677788999999
Q ss_pred HHHHHHHHHHHhchh
Q psy10052 118 VSETCYLALKRIQFV 132 (500)
Q Consensus 118 vr~~a~~aL~~~~~~ 132 (500)
||..|...+..+...
T Consensus 79 Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 79 IRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 89
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=97.05 E-value=0.00064 Score=38.16 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHhHhcCChhhHHHhhc
Q psy10052 476 MRYKAMFKLRDINSVESTLALTE 498 (500)
Q Consensus 476 ~r~~a~~al~~~g~~~~~~~l~~ 498 (500)
||..|+++||++|+++++++|++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~ 23 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIE 23 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHH
Confidence 69999999999999999999975
No 90
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=96.99 E-value=0.00073 Score=37.93 Aligned_cols=27 Identities=48% Similarity=0.635 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhcC
Q psy10052 87 VRHEAAEALGAIGDKSSISILEKYAQD 113 (500)
Q Consensus 87 vr~~a~~aL~~~~~~~~~~~L~~~l~d 113 (500)
||..|+++||.++++.+++.|+++++|
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhcC
Confidence 566666666666666666666666543
No 91
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.93 E-value=0.0021 Score=49.01 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=38.3
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKR 128 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 128 (500)
.++.++.++.|+ |+.||.+|+++|.++.. .+..+.|.+++.|+++.||..| +.|.+
T Consensus 28 Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 28 ILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 456666677776 67777777777766532 2456677888899999998776 44443
No 92
>KOG0915|consensus
Probab=96.87 E-value=1.1 Score=49.98 Aligned_cols=391 Identities=16% Similarity=0.142 Sum_probs=184.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHH-HHHHh---cC--------CcchHHHHHHHccCCCHHHHHHHHHHHHcc---CCCc--
Q psy10052 7 ILLIGQVLKDSSKPLKERFRAL-FTLKN---IG--------GKTAIQCISEAFADESALLKHELAYCLGQM---KDSD-- 69 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~-~~L~~---~~--------~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~---~~~~-- 69 (500)
...|...+.+++++ .|..+- |.|.- .| .++........|.|.|..++--|.+.||-. |+..
T Consensus 820 ~~~l~~~~~s~nph--~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPH--ERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHhcCCCCHH--HHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 45667777888886 676654 44432 22 123455666788899999999999998864 5543
Q ss_pred --cHHHHHHHhhccC-------CCHH-----------------HHHHHHHHHHhcCChhhHHHHHHHhcCCC-HHHHHHH
Q psy10052 70 --ANDILRQVLEDKS-------QEPM-----------------VRHEAAEALGAIGDKSSISILEKYAQDPV-KEVSETC 122 (500)
Q Consensus 70 --~~~~L~~~L~~~~-------~d~~-----------------vr~~a~~aL~~~~~~~~~~~L~~~l~d~~-~~vr~~a 122 (500)
.+..|+..|...+ ++.. .-..-+..-..+++|+.+-.+.++.+|.- +.-|..|
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~Ga 977 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGA 977 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccch
Confidence 3455555554321 0100 11111222222334444444555554443 4456666
Q ss_pred HHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHH--HHH-HHHcCCC-------hhh
Q psy10052 123 YLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYK--AMF-KLRDINS-------VES 192 (500)
Q Consensus 123 ~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~--A~~-~L~~~~~-------~~~ 192 (500)
+-+++.+........ +| -+ ...+|.|.+.=.|++ ..++.+ .++ +|..-.. .+.
T Consensus 978 AfGf~~i~~~a~~kl-----------~p--~l--~kLIPrLyRY~yDP~--~~Vq~aM~sIW~~Li~D~k~~vd~y~neI 1040 (1702)
T KOG0915|consen 978 AFGFGAIAKQAGEKL-----------EP--YL--KKLIPRLYRYQYDPD--KKVQDAMTSIWNALITDSKKVVDEYLNEI 1040 (1702)
T ss_pred hhchHHHHHHHHHhh-----------hh--HH--HHhhHHHhhhccCCc--HHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 666666553221110 00 00 123555555555544 334432 222 2322111 245
Q ss_pred HHHHHhhccCCCHhHHHHHHHHHhccCC--C--Cc---HHHHH----HHhhccCCCHHHHHHHHHHH---hhc----CC-
Q psy10052 193 TLALTEGLSHGSSLYRHEIAFVLGQMQN--P--SS---IPALT----SALEDQTQNEMVRHECAEAL---GAI----AT- 253 (500)
Q Consensus 193 i~~l~~~L~~~~~~vr~~a~~aL~~~~~--~--~~---i~~L~----~~l~~~~~~~~vr~~a~~aL---~~~----~~- 253 (500)
++.|+..+.+..+.||...+.+|..+-. + +. +|.+. ....| -...||.++-.+. +.+ ++
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD--IKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD--IKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 6677777888899999999999876532 1 11 22222 22333 2345777665443 221 11
Q ss_pred ------chHHHHHHHhhc-----CCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHH
Q psy10052 254 ------PECYDVLRKYLS-----DEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLK 322 (500)
Q Consensus 254 ------~~~~~~L~~~l~-----~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 322 (500)
..++..+..++- +.-+.||..++..+-.+...... .+....+.-++.|.+....-.+. .
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~---------~lkP~~~~LIp~ll~~~s~lE~~-v 1188 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK---------ELKPHFPKLIPLLLNAYSELEPQ-V 1188 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh---------hhcchhhHHHHHHHHHccccchH-H
Confidence 123344333333 44578888888877655433222 12222233344444443332221 1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC----CccHHHHHHHhhcCCCCHHHHHHHHHHHhhc
Q psy10052 323 ERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD----SDANDILRQVLEDKSQEPMVRHEAAEALGAI 398 (500)
Q Consensus 323 ~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~----~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~ 398 (500)
.-|.+.++. -...++++.+-.-....++. +..+.-+-+.-+ .+.+|.+.+++...- .-..|..++.-+..+
T Consensus 1189 LnYls~r~~--~~e~ealDt~R~s~aksspm--meTi~~ci~~iD~~vLeelip~l~el~R~sV-gl~Tkvg~A~fI~~L 1263 (1702)
T KOG0915|consen 1189 LNYLSLRLI--NIETEALDTLRASAAKSSPM--METINKCINYIDISVLEELIPRLTELVRGSV-GLGTKVGCASFISLL 1263 (1702)
T ss_pred HHHHHHhhh--hhHHHHHHHHHHhhhcCCcH--HHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-CCCcchhHHHHHHHH
Confidence 223333320 00112222221111111111 111111111111 234566666665321 222333333333222
Q ss_pred ----CC------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 399 ----GD------KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 399 ----~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
+. ...+..|...++|.++.+|..-+.|++.+....
T Consensus 1264 ~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1264 VQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 21 145566666678888888888888888886543
No 93
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.85 E-value=0.0021 Score=37.49 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 104 ISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 104 ~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+|.+.++++|+++.||.+|+.+|+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 577888888999999999998888875
No 94
>KOG2025|consensus
Probab=96.84 E-value=0.049 Score=55.28 Aligned_cols=177 Identities=20% Similarity=0.200 Sum_probs=85.8
Q ss_pred HHHHHccCCCHHHHHHHHHHHHccCC------Cc----cHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-h-----hhHH
Q psy10052 42 CISEAFADESALLKHELAYCLGQMKD------SD----ANDILRQVLEDKSQEPMVRHEAAEALGAIGD-K-----SSIS 105 (500)
Q Consensus 42 ~L~~~l~~~~~~vR~~a~~~L~~~~~------~~----~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-~-----~~~~ 105 (500)
.|++..++++-.||...+..|+.+-+ .. ....|..-+.|. .|.||..|+-+|.++.+ + ....
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr--ep~VRiqAv~aLsrlQ~d~~dee~~v~n 166 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR--EPNVRIQAVLALSRLQGDPKDEECPVVN 166 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHhcCCCCCcccHHH
Confidence 34444455566666666666655432 11 123333344444 46666666666666542 1 2344
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHH-H
Q psy10052 106 ILEKYA-QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMF-K 183 (500)
Q Consensus 106 ~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~-~ 183 (500)
.+..++ +||+++||.++...+.-- +...|.+++...|- +...|..+-. .
T Consensus 167 ~l~~liqnDpS~EVRRaaLsnI~vd---------------------------nsTlp~IveRarDV--~~anRrlvY~r~ 217 (892)
T KOG2025|consen 167 LLKDLIQNDPSDEVRRAALSNISVD---------------------------NSTLPCIVERARDV--SGANRRLVYERC 217 (892)
T ss_pred HHHHHHhcCCcHHHHHHHHHhhccC---------------------------cccchhHHHHhhhh--hHHHHHHHHHHh
Confidence 444444 566666666655444321 22345555555332 2223333322 2
Q ss_pred HHcCC-----ChhhHHHHHhhccCCCHhHHHHHHHHH--hccC-CCCcHHHHHHHhhccCCCHHHHHHHHHHHhh
Q psy10052 184 LRDIN-----SVESTLALTEGLSHGSSLYRHEIAFVL--GQMQ-NPSSIPALTSALEDQTQNEMVRHECAEALGA 250 (500)
Q Consensus 184 L~~~~-----~~~~i~~l~~~L~~~~~~vr~~a~~aL--~~~~-~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~ 250 (500)
|-++. -..-+..+.+.|.|.+..|+.++..++ |++. ...-++.+++.+.-. .+.+|+..++++|-.
T Consensus 218 lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvs-nss~vavk~lealf~ 291 (892)
T KOG2025|consen 218 LPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVS-NSSEVAVKALEALFS 291 (892)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccc-cchHHHHHHHHHHHH
Confidence 22221 113344555566666667777666665 2332 223355555555432 234677777777755
No 95
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=96.76 E-value=0.0021 Score=37.20 Aligned_cols=30 Identities=50% Similarity=0.757 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHhhcCC
Q psy10052 385 PMVRHEAAEALGAIGDKSSISILEKYAQDP 414 (500)
Q Consensus 385 ~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~ 414 (500)
|.+|..|+.+||+++++++++.|.++++|+
T Consensus 1 ~~vR~~aa~aLg~~~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCCHhHHHHHHHHhcCC
Confidence 457888888888888888888888877663
No 96
>KOG1077|consensus
Probab=96.74 E-value=0.85 Score=46.72 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCh----h----hHHHHHHHhc-CCCHHHHHHHHHHHhccCCCc----cHH
Q psy10052 306 KILLIGQVLKDSSKPLKERFRALFTLKNIGGK----T----AIQCISEAFA-DKSALLKHELAYCLGQMKDSD----AND 372 (500)
Q Consensus 306 ~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~----~----~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~----~~~ 372 (500)
.+..|.+++.+..++ .||.|++.+..+... + -.+.++..|+ +.|-.+|..++..|-.+++.+ ++.
T Consensus 330 ~~~~Lg~fls~rE~N--iRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~ 407 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETN--IRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVA 407 (938)
T ss_pred HHHHHHHHhhccccc--chhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHH
Confidence 455777777777665 688888887766431 1 2346667777 668888888888888887754 567
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHh
Q psy10052 373 ILRQVLEDKSQEPMVRHEAAEALG 396 (500)
Q Consensus 373 ~L~~~l~~~~~~~~vR~~a~~aL~ 396 (500)
.|+..+... ++.+|...+--.+
T Consensus 408 elLqYL~tA--d~sireeivlKvA 429 (938)
T KOG1077|consen 408 ELLQYLETA--DYSIREEIVLKVA 429 (938)
T ss_pred HHHHHHhhc--chHHHHHHHHHHH
Confidence 777777765 6778876654443
No 97
>KOG0915|consensus
Probab=96.73 E-value=0.14 Score=56.44 Aligned_cols=285 Identities=16% Similarity=0.178 Sum_probs=156.2
Q ss_pred HHHHHHhhccCCCHHHHHHHH-HHHHhc---C--------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 72 DILRQVLEDKSQEPMVRHEAA-EALGAI---G--------DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 72 ~~L~~~L~~~~~d~~vr~~a~-~aL~~~---~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
..|...+.++ +|.+|.+.+ |.|.-+ + .++....+..+|.|.|..++..|..+|+-+=.-.+...+
T Consensus 821 ~~l~~~~~s~--nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k- 897 (1702)
T KOG0915|consen 821 KLLDTLLTSP--NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK- 897 (1702)
T ss_pred HHHHHhcCCC--CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH-
Confidence 4455566666 788888764 444332 2 235667888899999999999999998754221111100
Q ss_pred cccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHh-hcc-CC---CHhHHHHHHHH
Q psy10052 140 DTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTE-GLS-HG---SSLYRHEIAFV 214 (500)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~-~L~-~~---~~~vr~~a~~a 214 (500)
...+..|+..|.... |. + .+... + ...+.+ .|. .| .-..=+..+..
T Consensus 898 -----------------~~LV~sL~~tl~~Gk-----r~-~----~~vs~-e-TelFq~G~Lg~Tp~Gg~isTYKELc~L 948 (1702)
T KOG0915|consen 898 -----------------KSLVDSLVNTLTGGK-----RK-A----IKVSE-E-TELFQEGTLGKTPDGGKISTYKELCNL 948 (1702)
T ss_pred -----------------HHHHHHHHHHHhccc-----cc-c----ceecc-c-hhcccCCcCCCCCCCCcchHHHHHHHH
Confidence 334555665552210 11 0 00000 0 000111 111 12 22334567777
Q ss_pred HhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccc
Q psy10052 215 LGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATP----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDY 284 (500)
Q Consensus 215 L~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~ 284 (500)
-..++.|+.+-.++++..+. ..+.-|..|+-.++.+... ..+|.|.++--||+..|+.+-..-=+.+-.
T Consensus 949 ASdl~qPdLVYKFM~LAnh~-A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~ 1027 (1702)
T KOG0915|consen 949 ASDLGQPDLVYKFMQLANHN-ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT 1027 (1702)
T ss_pred HhhcCChHHHHHHHHHhhhh-chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc
Confidence 77888999888888888753 3566688888888766532 357777778889999888753221111111
Q ss_pred cchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhc
Q psy10052 285 ENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQ 364 (500)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 364 (500)
+.. ..+ .++ -.+..+-|+..+.+..|.||.++|-+|..
T Consensus 1028 D~k-----------------~~v---------------d~y----------~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 1028 DSK-----------------KVV---------------DEY----------LNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred ChH-----------------HHH---------------HHH----------HHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 100 000 000 02234455555666677777777777765
Q ss_pred cCCC-----------ccHHHHHHHhhcCCCCHHHHHHH---HHHHhhc----CC-------ccHHHHHHHhhc-----CC
Q psy10052 365 MKDS-----------DANDILRQVLEDKSQEPMVRHEA---AEALGAI----GD-------KSSISILEKYAQ-----DP 414 (500)
Q Consensus 365 l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a---~~aL~~~----~~-------~~~~~~L~~~l~-----d~ 414 (500)
+-.. +....+.+.+.|- ...||.+| +.+|+++ .+ .+++..+..++= ++
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~ 1143 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDI--KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSK 1143 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccc
Confidence 5221 2333444444454 46677664 4444443 11 244445554442 46
Q ss_pred CHhHHHHHHHHHHHhhhhh
Q psy10052 415 VKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 415 ~~~vr~~A~~aL~~l~~~~ 433 (500)
-++||..+...+-.+....
T Consensus 1144 v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 7889988888888776544
No 98
>KOG4413|consensus
Probab=96.73 E-value=0.49 Score=43.85 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=43.9
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHHhcC---------------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIG---------------DKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~---------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
..+.|-..|..+ |..|..-++..+|.+- +.+..+.++.++-.+|..|..+|..++.++.-
T Consensus 83 lmpdLQrGLiad--dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 83 LMPDLQRGLIAD--DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hhHHHHhcccCC--cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 345555555555 6678888887777653 12456777888888999999999999999863
No 99
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.71 E-value=0.0076 Score=54.74 Aligned_cols=159 Identities=20% Similarity=0.153 Sum_probs=93.9
Q ss_pred hcCCCCHHHHHHHHHHHHhcCC--------hhh-------HHHHHHHhcCCCHHHHHHHHHHHhccCC----------Cc
Q psy10052 315 KDSSKPLKERFRALFTLKNIGG--------KTA-------IQCISEAFADKSALLKHELAYCLGQMKD----------SD 369 (500)
Q Consensus 315 ~~~~~~~~~r~~a~~~L~~~~~--------~~~-------~~~L~~~l~~~~~~vr~~a~~aL~~l~~----------~~ 369 (500)
.+++.+|..|..++..|..+.. +.. +..+...+.|....|-..++.++..+.. ..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 4455568888888887764421 111 1234445556666677777777766532 13
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHhhcC-----CccH-HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCC
Q psy10052 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIG-----DKSS-ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGN 443 (500)
Q Consensus 370 ~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~-----~~~~-~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~ 443 (500)
.++.|++.+.+. ...+|..|..+|..+- .+.. .+.+....+++++.+|..++..+..+-...+......
T Consensus 95 ~l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l--- 169 (228)
T PF12348_consen 95 LLPPLLKKLGDS--KKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL--- 169 (228)
T ss_dssp HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG---
T ss_pred HHHHHHHHHccc--cHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh---
Confidence 678888888876 5889999988887652 2455 6777778899999999999999998754332000000
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 444 IYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
.... .-+..++.+.+.+.|.++ .||..|-.++..+
T Consensus 170 -----~~~~--~~~~l~~~l~~~l~D~~~--~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 170 -----QKSA--FLKQLVKALVKLLSDADP--EVREAARECLWAL 204 (228)
T ss_dssp -------HH--HHHHHHHHHHHHHTSS-H--HHHHHHHHHHHHH
T ss_pred -----cccc--hHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHH
Confidence 0000 013577888888865544 6999999988877
No 100
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=96.70 E-value=0.0028 Score=36.64 Aligned_cols=29 Identities=48% Similarity=0.696 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhcCC
Q psy10052 86 MVRHEAAEALGAIGDKSSISILEKYAQDP 114 (500)
Q Consensus 86 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~ 114 (500)
.||..|+++||.++++.+++.|.++++|+
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhcCC
Confidence 46666677777766666666666666553
No 101
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.64 E-value=0.027 Score=51.10 Aligned_cols=94 Identities=26% Similarity=0.295 Sum_probs=65.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhccCC-----Ccc-HHHHHHHhhcCCCCHHHHHHHHHHHhhc----C-------C
Q psy10052 338 TAIQCISEAFADKSALLKHELAYCLGQMKD-----SDA-NDILRQVLEDKSQEPMVRHEAAEALGAI----G-------D 400 (500)
Q Consensus 338 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~-----~~~-~~~L~~~l~~~~~~~~vR~~a~~aL~~~----~-------~ 400 (500)
..++.|++.+.+....++..+..+|..+.. +.. .+.+.....+. ++.+|..++..|..+ + .
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 456777888888888899888888776643 233 45555666666 799999998887654 3 0
Q ss_pred ----ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 401 ----KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 401 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
+...+.+.++++|+++.||..|..++..+....
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 236677888889999999999999999986554
No 102
>KOG4535|consensus
Probab=96.63 E-value=0.047 Score=52.83 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHhccCCC------------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc
Q psy10052 350 KSALLKHELAYCLGQMKDS------------DANDILRQVLEDKSQEPMVRHEAAEALGAIGDK 401 (500)
Q Consensus 350 ~~~~vr~~a~~aL~~l~~~------------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~ 401 (500)
....||+++|.++|++-.. .+.+.|..++.+-. +.+||..|+.+|..-+.+
T Consensus 542 ~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 542 AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeehhhhhhcCCCCc
Confidence 3567889999998887432 25677777776653 789999999999876543
No 103
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.48 E-value=0.0059 Score=35.57 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=18.7
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 404 ISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 404 ~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
+|.+.++++|+++.||..|+++|+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 566777777777777777777777764
No 104
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.33 E-value=0.0079 Score=45.92 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHH
Q psy10052 371 NDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCY 423 (500)
Q Consensus 371 ~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~ 423 (500)
+++++..+.|. +++||..|+++|.++.. .+..+.|.++..|+++.||..|.
T Consensus 29 l~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 29 LPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 44444444443 45555555555544421 34667778888899999998773
No 105
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=96.24 E-value=0.14 Score=46.27 Aligned_cols=29 Identities=31% Similarity=0.490 Sum_probs=21.1
Q ss_pred cHHHHHHHhcCCCcCHHHHHHHHHHHHcC
Q psy10052 159 DINKLKEILLNENEDLFMRYKAMFKLRDI 187 (500)
Q Consensus 159 ~~~~L~~~l~d~~~~~~~r~~A~~~L~~~ 187 (500)
.+..|.+.+.+++.+.++|.+|+.+|...
T Consensus 112 ~~~~L~~li~~~~~~~yvR~aa~~aL~~l 140 (249)
T PF06685_consen 112 DIEPLKELIEDPDADEYVRMAAISALAFL 140 (249)
T ss_pred CHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 46777777777777778888777776653
No 106
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.23 E-value=0.026 Score=48.89 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 84 EPMVRHEAAEALGAIGD------KSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 84 d~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
||.||..++.++|.+.. ...++.+...|+|+++.||..|+..|.++-.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~ 54 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL 54 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999997653 2467788999999999999999999998753
No 107
>KOG2005|consensus
Probab=95.94 E-value=0.46 Score=48.20 Aligned_cols=267 Identities=17% Similarity=0.174 Sum_probs=141.4
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC------CccHHHHHHHhhccCCCHHHHHHHHHHHHhc--C--ChhhHHHH
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRHEAAEALGAI--G--DKSSISIL 107 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~--~--~~~~~~~L 107 (500)
.-+..|-+.|-.++.+++..|+-.+|..+. +.+...|...++++ +..+|..++--||-. | ..+....|
T Consensus 415 ~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~--~s~~ri~aIlGLglayaGsq~e~V~~lL 492 (878)
T KOG2005|consen 415 KGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSS--SSIHRIGAILGLGLAYAGSQREEVLELL 492 (878)
T ss_pred hhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCC--CceeehHHhhhhHHhhcCCchHHHHHHH
Confidence 356667777777777888888888776642 23344455555555 677898888877753 2 22344467
Q ss_pred HHHhcCCCHH--HHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHh----cCCCcCHHHHHHHH
Q psy10052 108 EKYAQDPVKE--VSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEIL----LNENEDLFMRYKAM 181 (500)
Q Consensus 108 ~~~l~d~~~~--vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l----~d~~~~~~~r~~A~ 181 (500)
...+.|.+.. |...|.-+|+.+--.... ++....+++.+ +.+..+.+.|+-++
T Consensus 493 ~Pi~~d~~~~~ev~~~aslsLG~IfvGscn---------------------~dvts~ilqtlmekse~El~d~~~RFL~L 551 (878)
T KOG2005|consen 493 SPIMFDTKSPMEVVAFASLSLGMIFVGSCN---------------------EDVTSSILQTLMEKSETELEDQWFRFLAL 551 (878)
T ss_pred hHHhcCCCCchhHHHHHHhhcceeEEecCC---------------------hHHHHHHHHHHHHhhhhhhhchHHHHHHH
Confidence 7778777644 666666666655311110 22233333333 22345667888775
Q ss_pred H-HHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHh---ccCCCC--cH--HHHHHHhhccCCC------HHHHHHHHHH
Q psy10052 182 F-KLRDINSVESTLALTEGLSHGSSLYRHEIAFVLG---QMQNPS--SI--PALTSALEDQTQN------EMVRHECAEA 247 (500)
Q Consensus 182 ~-~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~---~~~~~~--~i--~~L~~~l~~~~~~------~~vr~~a~~a 247 (500)
- ++-..+..+.++.....++.-...+|..+--.+. ..|... -+ ..+...-.+.+.+ +.|--.|.-+
T Consensus 552 GL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliA 631 (878)
T KOG2005|consen 552 GLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIA 631 (878)
T ss_pred HHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhh
Confidence 4 3444555556666665554433334432222221 111110 01 1111111111111 2222223333
Q ss_pred Hh-hcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHH
Q psy10052 248 LG-AIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFR 326 (500)
Q Consensus 248 L~-~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~ 326 (500)
+| .+|.+-.+..+-.++.-..+.+|++.-.|++.+...+ |.
T Consensus 632 Mgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSN--------------------------------Pq------ 673 (878)
T KOG2005|consen 632 MGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSN--------------------------------PQ------ 673 (878)
T ss_pred hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCC--------------------------------Cc------
Confidence 33 3344445566666666667777777766666433221 11
Q ss_pred HHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHH
Q psy10052 327 ALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILR 375 (500)
Q Consensus 327 a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~ 375 (500)
-...+.|.+...|.|.++-.+++.++|-++...--..|.
T Consensus 674 ----------~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla 712 (878)
T KOG2005|consen 674 ----------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLA 712 (878)
T ss_pred ----------chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHH
Confidence 124567777777888888888888888887655433333
No 108
>KOG4413|consensus
Probab=95.82 E-value=1.1 Score=41.72 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=58.7
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHhccCC----------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc------
Q psy10052 339 AIQCISEAFA-DKSALLKHELAYCLGQMKD----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------ 401 (500)
Q Consensus 339 ~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~------ 401 (500)
.++.|..-+. .+|..|+...++..-.+.. ...+..+.+.+...+.+|.-+..++...+++-..
T Consensus 214 LldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv 293 (524)
T KOG4413|consen 214 LLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV 293 (524)
T ss_pred HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc
Confidence 3444544444 4677777777766554422 2356666666665555777777777777665321
Q ss_pred ---c-------HHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 402 ---S-------SISILEKYAQDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 402 ---~-------~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
. +++-..+.++..|+.....|+.+++.+++...
T Consensus 294 seeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 294 SEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred CHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 1 11222234456788899999999999987654
No 109
>KOG1517|consensus
Probab=95.51 E-value=0.43 Score=50.95 Aligned_cols=167 Identities=22% Similarity=0.216 Sum_probs=112.9
Q ss_pred CCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHhccC--C
Q psy10052 301 MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLKHELAYCLGQMK--D 367 (500)
Q Consensus 301 ~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~--~ 367 (500)
...+..+|...++|.+. .-|.+|+..|++.-+ -...|.++++|.++-.++|...+...+++- +
T Consensus 468 r~PPeQLPiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD 543 (1387)
T KOG1517|consen 468 RTPPEQLPIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD 543 (1387)
T ss_pred CCChHhcchHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence 34455566666655553 258999999997643 245688999999999999987776666652 2
Q ss_pred CccHHHHHH---------Hhhc-CCCCHHHHHHHHHHHhhcCC-----------ccHHHHHHHhhcC-CCHhHHHHHHHH
Q psy10052 368 SDANDILRQ---------VLED-KSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQD-PVKEVSETCYLA 425 (500)
Q Consensus 368 ~~~~~~L~~---------~l~~-~~~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~A~~a 425 (500)
+..-.-|++ .+.+ ..-+++=|..|+-.|+.+-+ .+.+......++| +.+-+|+..+.+
T Consensus 544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC 623 (1387)
T ss_pred chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 222222221 2222 22346788888888887632 3567777888888 579999999999
Q ss_pred HHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 426 LKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 426 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
||++=...... +|.. ....+.++|...|.|+-+ .||-+|.||||-+
T Consensus 624 LG~LW~d~~~A-------rw~G-------~r~~AhekL~~~LsD~vp--EVRaAAVFALgtf 669 (1387)
T KOG1517|consen 624 LGRLWEDYDEA-------RWSG-------RRDNAHEKLILLLSDPVP--EVRAAAVFALGTF 669 (1387)
T ss_pred HHHHhhhcchh-------hhcc-------ccccHHHHHHHHhcCccH--HHHHHHHHHHHHH
Confidence 99985433221 1211 123788999999976554 5999999999988
No 110
>KOG1048|consensus
Probab=95.32 E-value=3.5 Score=43.03 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=62.8
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc--CC---------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 71 NDILRQVLEDKSQEPMVRHEAAEALGAI--GD---------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 71 ~~~L~~~L~~~~~d~~vr~~a~~aL~~~--~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
.+.-+..|... ++.++..|+-.+-.+ ++ -..++.|+.++.++..+|+.+|..+|.++-.......-
T Consensus 235 lpe~i~mL~~q--~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N- 311 (717)
T KOG1048|consen 235 LPEVISMLMSQ--DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN- 311 (717)
T ss_pred cHHHHHHHhcc--ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc-
Confidence 45566666666 677777776665543 22 24578899999999999999999999998743322100
Q ss_pred cccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC
Q psy10052 140 DTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS 189 (500)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~ 189 (500)
..++....-++.+++.|... .|..+|..+.-.|-+..+
T Consensus 312 -----------Klai~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 312 -----------KLAIKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSS 349 (717)
T ss_pred -----------chhhhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccc
Confidence 00010123467777777532 233456655555544443
No 111
>KOG1517|consensus
Probab=95.25 E-value=2.5 Score=45.60 Aligned_cols=200 Identities=23% Similarity=0.213 Sum_probs=125.7
Q ss_pred CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhcc-ccch
Q psy10052 220 NPSSIPALTSALEDQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCD-YENS 287 (500)
Q Consensus 220 ~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~-~~~~ 287 (500)
.|+-+|..++.|-.. --|..|...|+++-+- +++|-..++|+++-.++|..-+.-=.+|- .+.+
T Consensus 470 PPeQLPiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~S 545 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPS 545 (1387)
T ss_pred ChHhcchHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCch
Confidence 456678888777542 2477788888876542 46899999999998777765433322221 1222
Q ss_pred hHhHHHHhhhccCCCChHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCC-CHHH
Q psy10052 288 VELQYADTLCKFKMIPEEKILLIGQVLKD-SSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADK-SALL 354 (500)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~-~~~v 354 (500)
.+.+....-+ . .-..+.+.+ ..-+-..|..|++.|..+.. ...+..-+..++++ .+.+
T Consensus 546 CQ~dLvKe~g---~------~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLL 616 (1387)
T KOG1517|consen 546 CQADLVKENG---Y------KYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLL 616 (1387)
T ss_pred hHHHHHhccC---c------eeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHH
Confidence 2211111000 0 000011111 22222468888888875543 23444446677774 7889
Q ss_pred HHHHHHHHhccCC-----------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC-----------------------
Q psy10052 355 KHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------------------- 400 (500)
Q Consensus 355 r~~a~~aL~~l~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------------------- 400 (500)
|.=++-+||++.. ..+.+.|...+.|+ -++||.+|+-|||.+-.
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~ 694 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDER 694 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhh
Confidence 9999999998853 23788999999987 79999999999998632
Q ss_pred ---ccHHH----HHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 401 ---KSSIS----ILEKYAQDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 401 ---~~~~~----~L~~~l~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
++.+. .+...++|..+-||.+.+.+|..+.....
T Consensus 695 ~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 695 TSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 01112 45556689999999999999998765543
No 112
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.08 E-value=0.083 Score=39.85 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=49.4
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---C------cchHHHHHHHccCCCHHHHHHHHHHHHccCC---CccH
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIG---G------KTAIQCISEAFADESALLKHELAYCLGQMKD---SDAN 71 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~---~------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~---~~~~ 71 (500)
..+.......|.||..+ +|.+++..|.+.- . +..+..+...|+|+|++|-..|+.+|..+.+ ..++
T Consensus 2 ~~~~~~al~~L~dp~~P--vRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPP--VRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred hHHHHHHHHHccCCCcc--hHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 34566777788888887 8888888887742 1 1234445556677777777777777776642 3355
Q ss_pred HHHHHHhhcc
Q psy10052 72 DILRQVLEDK 81 (500)
Q Consensus 72 ~~L~~~L~~~ 81 (500)
+.|++...+.
T Consensus 80 ~~L~~~y~~~ 89 (92)
T PF10363_consen 80 PILLDEYADP 89 (92)
T ss_pred HHHHHHHhCc
Confidence 6666655554
No 113
>KOG2032|consensus
Probab=95.01 E-value=2.9 Score=41.27 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCcc----------hHHHHHHHccCCCHHHHHHHHHHHHccCC----------CccHHHHHHHhhc
Q psy10052 21 LKERFRALFTLKNIGGKT----------AIQCISEAFADESALLKHELAYCLGQMKD----------SDANDILRQVLED 80 (500)
Q Consensus 21 ~~~R~~A~~~L~~~~~~~----------~~~~L~~~l~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~L~~ 80 (500)
|..|..-+-.+.++..+. .+..+.+-..|++..+|..|++.|+.+.. ...+..++..|.|
T Consensus 231 ~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D 310 (533)
T KOG2032|consen 231 ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYD 310 (533)
T ss_pred ccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhc
Confidence 467777777777765432 23344445568999999999999998743 2346777778887
Q ss_pred cCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 81 KSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 81 ~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
.. +..|...++.+|...-.. .+.-.+..+..+.++.+|.++...++.+..
T Consensus 311 ~~-~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 311 DL-NEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred CC-ccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 75 688999999998775321 223346667789999999999999988764
No 114
>KOG2956|consensus
Probab=94.88 E-value=1.1 Score=43.72 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=19.2
Q ss_pred hhHHHHHhhccCCCHhHHHHHHHHHhc
Q psy10052 191 ESTLALTEGLSHGSSLYRHEIAFVLGQ 217 (500)
Q Consensus 191 ~~i~~l~~~L~~~~~~vr~~a~~aL~~ 217 (500)
+..|.+++...+.+..||+.++++|..
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 456677777777777888887777643
No 115
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=94.77 E-value=1.1 Score=40.59 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcC------ChhhHHHHHHH----hcCCCHHHHHHHHHHHhccCCCccHHHHHHHh
Q psy10052 309 LIGQVLKDSSKPLKERFRALFTLKNIG------GKTAIQCISEA----FADKSALLKHELAYCLGQMKDSDANDILRQVL 378 (500)
Q Consensus 309 ~l~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~L~~~----l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l 378 (500)
.|.+++.+++....+|..|+.+|..+. .++.+..+..+ ++.++..+-...+..+..+...+..+.+.++.
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f 194 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAF 194 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHH
Confidence 444444444444445555555444221 12333333332 22333344555555555666656666666555
Q ss_pred hc
Q psy10052 379 ED 380 (500)
Q Consensus 379 ~~ 380 (500)
.+
T Consensus 195 ~~ 196 (249)
T PF06685_consen 195 ED 196 (249)
T ss_pred Hc
Confidence 43
No 116
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.49 E-value=1 Score=45.17 Aligned_cols=157 Identities=16% Similarity=0.066 Sum_probs=99.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhH-HHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q psy10052 256 CYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQ-YADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNI 334 (500)
Q Consensus 256 ~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~ 334 (500)
.+-.+...+.+++..||..+++-+..+..--..-.+ ..+ .-+..|.+.+-|..+ .+|..|+.+|...
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N----------~L~ekl~~R~~DRE~--~VR~eAv~~L~~~ 159 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLAN----------GLLEKLSERLFDREK--AVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHH----------HHHHHHHHHHhcchH--HHHHHHHHHHHHH
Confidence 345566677888889999888887755322111000 001 112344444444443 4899999999876
Q ss_pred CC----h--hhHHHHHHHhc-CCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHH-HHHHHHhhcCCcc----
Q psy10052 335 GG----K--TAIQCISEAFA-DKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRH-EAAEALGAIGDKS---- 402 (500)
Q Consensus 335 ~~----~--~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~-~a~~aL~~~~~~~---- 402 (500)
.. + .....|...+. |++.+||..+...+ ..++...|.+++...|- +...|. --.+.|-++|+..
T Consensus 160 Qe~~~neen~~~n~l~~~vqnDPS~EVRr~allni--~vdnsT~p~IlERarDv--~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 160 QEMELNEENRIVNLLKDIVQNDPSDEVRRLALLNI--SVDNSTYPCILERARDV--SGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred HhccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHe--eeCCCcchhHHHHhhhh--hHHHHHHHHHHHhhhhcchhhccc
Confidence 43 1 23445555554 78899999877655 34667889999888876 344444 4456677776532
Q ss_pred --HHHHHHHhhcCCCHhHHHHHHHHHHH
Q psy10052 403 --SISILEKYAQDPVKEVSETCYLALKR 428 (500)
Q Consensus 403 --~~~~L~~~l~d~~~~vr~~A~~aL~~ 428 (500)
-+-.+.+.+.|.+..|+.+++.++..
T Consensus 236 ~kri~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKRILLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cceehhhhhcchhhhhhHHHHHHHHHHH
Confidence 23356667889999999998888775
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.39 E-value=0.079 Score=33.08 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=25.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 101 KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 101 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
.+.+|.|+++++++++.|+..|+++|+++.
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 367888888888888999999999888764
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.15 E-value=3.3 Score=39.34 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=47.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCC------------cchHHHHHHHccCCCHHHHHHHHHHHHcc----C--C--
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGG------------KTAIQCISEAFADESALLKHELAYCLGQM----K--D-- 67 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~----~--~-- 67 (500)
...+..|.+.... .|..++..+.+.-. ...+..+.+.++-+...-+..|+.+++-+ | .
T Consensus 46 ~~~Id~l~eK~~~--~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 46 KEAIDLLTEKSSS--TREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHhcCHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3445555555543 77777777665321 13455566666655444444454544422 2 1
Q ss_pred ----CccHHHHHHHhhccCCCHHHHHHHHHHHHh
Q psy10052 68 ----SDANDILRQVLEDKSQEPMVRHEAAEALGA 97 (500)
Q Consensus 68 ----~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~ 97 (500)
....|.|.+.+.|....+.+|..++.+||-
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai 157 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAI 157 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHH
Confidence 134566666666664345566677766664
No 119
>KOG0168|consensus
Probab=94.05 E-value=0.94 Score=47.41 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=104.0
Q ss_pred hHHHHHHHcc-CCCHHHHHHHHHHHHcc---CC---------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----
Q psy10052 39 AIQCISEAFA-DESALLKHELAYCLGQM---KD---------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----- 100 (500)
Q Consensus 39 ~~~~L~~~l~-~~~~~vR~~a~~~L~~~---~~---------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----- 100 (500)
-+..|++.|. ..|+..+.+++.-|.++ ++ ...+|.|+.+|+++. +..+...|+++|..+.+
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~-n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH-NFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhhccch
Confidence 4566777776 55888888888877764 33 346899999999997 78999999999998753
Q ss_pred ------hhhHHHHHHHh-cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcC
Q psy10052 101 ------KSSISILEKYA-QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED 173 (500)
Q Consensus 101 ------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~ 173 (500)
..++|.|+.-| .=+--.|.+++.+||.+|...+...-. +...+...+.+|.- -.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL-----------------~AG~l~a~LsylDF--FS 307 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAIL-----------------QAGALSAVLSYLDF--FS 307 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHH-----------------hcccHHHHHHHHHH--HH
Confidence 24788777655 344467899999999998765433221 12234444444411 12
Q ss_pred HHHHHHHHHHH----HcCCCh------hhHHHHHhhccCCCHhHHHHHHHHHhcc
Q psy10052 174 LFMRYKAMFKL----RDINSV------ESTLALTEGLSHGSSLYRHEIAFVLGQM 218 (500)
Q Consensus 174 ~~~r~~A~~~L----~~~~~~------~~i~~l~~~L~~~~~~vr~~a~~aL~~~ 218 (500)
...+..|+... ..+... +++|.|..+|+..+..+-..++-++.++
T Consensus 308 i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 308 IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 22344444333 334332 5788888888876666666666665544
No 120
>KOG0946|consensus
Probab=93.98 E-value=9.4 Score=40.10 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=88.9
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHcc-C-CCHHHHHHHHHHHHcc--------
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-------KTAIQCISEAFA-D-ESALLKHELAYCLGQM-------- 65 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-------~~~~~~L~~~l~-~-~~~~vR~~a~~~L~~~-------- 65 (500)
...+++.|+..+.+.--. ..|..|.+.|..... ....++|+..|+ | .|+..-..++..+..+
T Consensus 20 ~aETI~kLcDRvessTL~-eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLL-EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHhHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 357889999999876553 489999999887542 235667777775 2 3566655665555433
Q ss_pred --------------------CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------------ChhhHHHHHHHhc
Q psy10052 66 --------------------KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------------DKSSISILEKYAQ 112 (500)
Q Consensus 66 --------------------~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------------~~~~~~~L~~~l~ 112 (500)
..++-+.-|+..+... |-.||++++..+..+- .|..+..|+.+|.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 1234466677777777 7889999999887642 2456778888899
Q ss_pred CCCHHHHHHHHHHHHHhch
Q psy10052 113 DPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 113 d~~~~vr~~a~~aL~~~~~ 131 (500)
|...-+|..++.-|..+..
T Consensus 177 DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVK 195 (970)
T ss_pred hhhhhhchhHHHHHHHHHc
Confidence 9988899988888877654
No 121
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.90 E-value=1.6 Score=43.84 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=89.0
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHccCC------Cc----cHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----h--h
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQMKD------SD----ANDILRQVLEDKSQEPMVRHEAAEALGAIGD----K--S 102 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~~~------~~----~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----~--~ 102 (500)
.+..++..+.+++..||...+..|+.+.+ .. .+..|.+-+-|. .+.||..|+-+|..+.. + .
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR--E~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR--EKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhccCChHHH
Confidence 45556666778899999999998887632 11 233444444455 68899999999988752 1 2
Q ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHH
Q psy10052 103 SISILEKYA-QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 181 (500)
Q Consensus 103 ~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~ 181 (500)
....|+..+ +||...||..|..-+..- +...|-+++...|-+. ..-|..-.
T Consensus 170 ~~n~l~~~vqnDPS~EVRr~allni~vd---------------------------nsT~p~IlERarDv~~-anRr~vY~ 221 (885)
T COG5218 170 IVNLLKDIVQNDPSDEVRRLALLNISVD---------------------------NSTYPCILERARDVSG-ANRRMVYE 221 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHeeeC---------------------------CCcchhHHHHhhhhhH-HHHHHHHH
Confidence 334444444 788899998877655321 2234555555533221 11233334
Q ss_pred HHHHcCCCh------hhHHHHHhhccCCCHhHHHHHHHHHh
Q psy10052 182 FKLRDINSV------ESTLALTEGLSHGSSLYRHEIAFVLG 216 (500)
Q Consensus 182 ~~L~~~~~~------~~i~~l~~~L~~~~~~vr~~a~~aL~ 216 (500)
..|-++|+- +-+-.+.+.|.|....|+.+++.++.
T Consensus 222 r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 222 RCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred HHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHH
Confidence 555555542 23345566677777777777777663
No 122
>KOG4653|consensus
Probab=93.83 E-value=2.2 Score=44.95 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=85.5
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHccCCCHHHHHHHHH---HHHccCCCccHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGG----------KTAIQCISEAFADESALLKHELAY---CLGQMKDSDAND 72 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vR~~a~~---~L~~~~~~~~~~ 72 (500)
.....+..+.++..+ +|..++..|...-. ...+...++.|+|.|++|-..++. .|..+-++...|
T Consensus 728 ~~qeai~sl~d~qvp--ik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~ 805 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVP--IKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILP 805 (982)
T ss_pred HHHHHHHHhcCCccc--chHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHH
Confidence 345566777888887 99999998886432 246777788899999999999999 666777777888
Q ss_pred HHHHHhhccCCC--HHHHHHHHHHHHhc-------CC---hhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 73 ILRQVLEDKSQE--PMVRHEAAEALGAI-------GD---KSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 73 ~L~~~L~~~~~d--~~vr~~a~~aL~~~-------~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
.|.+...+++.. +..|...-++++++ .. ...+..++....|||...|..+...++.+..
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 888855443211 23343333444443 21 1234556666789998899988888888753
No 123
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=93.75 E-value=0.32 Score=39.71 Aligned_cols=30 Identities=23% Similarity=0.093 Sum_probs=15.4
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIG 35 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~ 35 (500)
...+.+|+++|+++... .+...+..|.++-
T Consensus 21 a~Qt~~lielLk~~~~~--~~~~lldLL~~RV 50 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAG--EEAFLLDLLTNRV 50 (154)
T ss_dssp HHHHHHHHHHHHS--TT---HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCc--cHHHHHHHHHhcC
Confidence 34556667777666554 4555555555543
No 124
>KOG2005|consensus
Probab=93.50 E-value=10 Score=39.00 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccCC--Cc--cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----ccHHHHHHHh
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMKD--SD--ANDILRQVLEDKSQEPMVRHEAAEALGAIGD----KSSISILEKY 410 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~--~~--~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----~~~~~~L~~~ 410 (500)
++..+-.++.-.++.+|.+.=-+++-+.. |. +.+.|-+...+. +.++-..++-++|-+|. ......|.++
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~--D~eva~naIfamGLiGAGTnNARla~mLrql 718 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDG--DLEVAMNAIFAMGLIGAGTNNARLAQMLRQL 718 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCc--chHHHHHHHHHhccccCCcchHHHHHHHHHH
Confidence 34455667778899999998888887754 33 677787777776 89999999999999874 2334444443
Q ss_pred h----cCCCHhHHHHHHHHHHHhhhh
Q psy10052 411 A----QDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 411 l----~d~~~~vr~~A~~aL~~l~~~ 432 (500)
. +|.+.-.-...+++|-.++..
T Consensus 719 aSYyyKd~~~Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 719 ASYYYKDSKALFVVRIAQGLVHLGKG 744 (878)
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCC
Confidence 3 566555555567778777764
No 125
>KOG0168|consensus
Probab=93.17 E-value=1.8 Score=45.49 Aligned_cols=61 Identities=21% Similarity=0.161 Sum_probs=45.7
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHHhc---CC---------hhhHHHHHHHhcCCC-HHHHHHHHHHHHHhch
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEALGAI---GD---------KSSISILEKYAQDPV-KEVSETCYLALKRIQF 131 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL~~~---~~---------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~ 131 (500)
-+..|++.|..+. |+..+..|+.-|.++ ++ ...+|.|+.+|++++ ..+...|.+||..+.+
T Consensus 168 k~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 168 KAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred HHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 3566777777665 777777777666553 22 357899999998775 8899999999999875
No 126
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.90 E-value=6.3 Score=37.48 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=58.7
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHhhc---C--CccHH----HHHHH-----hhc-C---------CCHhHHHHHHHH
Q psy10052 370 ANDILRQVLEDKSQEPMVRHEAAEALGAI---G--DKSSI----SILEK-----YAQ-D---------PVKEVSETCYLA 425 (500)
Q Consensus 370 ~~~~L~~~l~~~~~~~~vR~~a~~aL~~~---~--~~~~~----~~L~~-----~l~-d---------~~~~vr~~A~~a 425 (500)
..|.|...+.+.+....+|..++.+|+-. + +++.+ ..+.. +.+ + +++.|..+|..+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 45667777776655667777777776643 1 11111 22321 111 1 235688888777
Q ss_pred HHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 426 LKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 426 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
-+.+-.......... .....++.|...|. ..+..||.+|.++++=+
T Consensus 210 W~lLlt~~~~~~~~~--------------~~~~~~~~l~~lL~--s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 210 WALLLTTLPDSKLED--------------LLEEALPALSELLD--SDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHhcCCHHHHHH--------------HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 776653321100000 12468899999885 44667999999988755
No 127
>KOG1293|consensus
Probab=92.90 E-value=1.2 Score=45.32 Aligned_cols=133 Identities=23% Similarity=0.235 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHhc-----------cCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC----C-------ccHHHH
Q psy10052 349 DKSALLKHELAYCLGQ-----------MKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG----D-------KSSISI 406 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~-----------l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~----~-------~~~~~~ 406 (500)
-.|..++.+++.++.. +.......+|+.++.++ +..|...+..+|.++- + ...++.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 4467777777766543 34456889999999887 7899999999998863 2 367899
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHh
Q psy10052 407 LEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRD 486 (500)
Q Consensus 407 L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~ 486 (500)
+..++.++++.+|..+.|.|+.+........+.. ..+..-..++-.+. +|+++.|...+-.-|.+
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~--------------~~~ki~a~~i~~l~-nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQ--------------LLAKIPANLILDLI-NDPDWAVQEQCFQLLRN 530 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHH--------------HHHHhhHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999876554332210 01122233333343 68888899999889998
Q ss_pred c--CChhhHHHhhc
Q psy10052 487 I--NSVESTLALTE 498 (500)
Q Consensus 487 ~--g~~~~~~~l~~ 498 (500)
+ |.++.+..+.+
T Consensus 531 l~c~~~~svdfll~ 544 (678)
T KOG1293|consen 531 LTCNSRKSVDFLLE 544 (678)
T ss_pred hhcCcHHHHHHHHH
Confidence 8 67777776654
No 128
>KOG1048|consensus
Probab=92.83 E-value=6.1 Score=41.34 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=65.6
Q ss_pred cHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh---------hhHHHHHhhccCCCHhHHHHHHHHHhccC----------
Q psy10052 159 DINKLKEILLNENEDLFMRYKAMFKLRDINSV---------ESTLALTEGLSHGSSLYRHEIAFVLGQMQ---------- 219 (500)
Q Consensus 159 ~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~---------~~i~~l~~~L~~~~~~vr~~a~~aL~~~~---------- 219 (500)
.++..+..|...+++.....++...+..+++. ..++.++.+|.+++..|++.++.+|.++-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 46777788854444333333333334444443 46788899999999999999999997653
Q ss_pred ---CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCch
Q psy10052 220 ---NPSSIPALTSALEDQTQNEMVRHECAEALGAIATPE 255 (500)
Q Consensus 220 ---~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~ 255 (500)
...-++.+++.+... .|.+++..+.-.|-++...+
T Consensus 314 ai~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~D 351 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSND 351 (717)
T ss_pred hhhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccchh
Confidence 224588899999854 35789998888887776553
No 129
>KOG1020|consensus
Probab=92.82 E-value=1.5 Score=48.99 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=74.7
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCC--------CccHHHHHHHhhccCCCHHHHHHHHHHHHhc--CChh----
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAI--GDKS---- 102 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~--~~~~---- 102 (500)
+..+..++..|..+.+.+|..|+++|+.+.. ++.-..+..-+.|. ...||.+|++.+|++ ..++
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds--sasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS--SASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc--hhHHHHHHHHHHhhhhhccHHHHHH
Confidence 4578888888899999999999999998843 34456666667777 689999999999975 3343
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 103 SISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 103 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
....+...+.|+...||..++.-+..+..
T Consensus 893 yY~~i~erIlDtgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 893 YYDQIIERILDTGVSVRKRVIKILRDICE 921 (1692)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 45566667799999999999999999875
No 130
>KOG3678|consensus
Probab=92.74 E-value=7.3 Score=38.23 Aligned_cols=128 Identities=19% Similarity=0.109 Sum_probs=79.3
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcch--------HHHHHHHcc-CCCHHHHHHHHHHHHcc-C-CCccHHH
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTA--------IQCISEAFA-DESALLKHELAYCLGQM-K-DSDANDI 73 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~--------~~~L~~~l~-~~~~~vR~~a~~~L~~~-~-~~~~~~~ 73 (500)
.-.+.|++++..|+-+..+|..|.+.|.++-..+- ...+..+-+ .+.+......+-.|+.+ + ..+....
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34678899999999776689999999998753211 222223333 33445555555555554 1 2222233
Q ss_pred HHH---------HhhccCCCHHHHHHHHHHHHhcCC------------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 74 LRQ---------VLEDKSQEPMVRHEAAEALGAIGD------------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 74 L~~---------~L~~~~~d~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
|+. -.... ||.+.+.++-+||++.- ..+.+.|..+....|...|..|..+..-+...
T Consensus 260 Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecccC--CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 332 22334 68888899999998642 12334555566677888999999998877654
Q ss_pred cc
Q psy10052 133 TE 134 (500)
Q Consensus 133 ~~ 134 (500)
..
T Consensus 338 KE 339 (832)
T KOG3678|consen 338 KE 339 (832)
T ss_pred hh
Confidence 43
No 131
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.71 E-value=0.23 Score=30.96 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=20.5
Q ss_pred cHHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 402 SSISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 402 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
..++.|..+++++++.|+..|+++|++|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45677777777777777777777777663
No 132
>KOG2122|consensus
Probab=92.58 E-value=22 Score=40.37 Aligned_cols=217 Identities=13% Similarity=0.127 Sum_probs=124.9
Q ss_pred CCHhHHHHHHHHHhccCCCCcHHHHHHHhh-------ccCCCHHHHHHHHHHHhhcCC------------chHHHHHHHh
Q psy10052 203 GSSLYRHEIAFVLGQMQNPSSIPALTSALE-------DQTQNEMVRHECAEALGAIAT------------PECYDVLRKY 263 (500)
Q Consensus 203 ~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~-------~~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~ 263 (500)
-+.+.|+.+.. | |.-++++.|+..-+ ++..+..+|+.+..+|.++.. .+++..++..
T Consensus 327 FDEEhR~aM~E-L---G~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQ 402 (2195)
T KOG2122|consen 327 FDEEHRHAMNE-L---GGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQ 402 (2195)
T ss_pred ccHHHHHHHHH-h---hhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHH
Confidence 35556654433 3 32245555554322 112345689999999975432 2467888887
Q ss_pred hcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHh-hcCC-CCHHHHHHHHHHHHhcCC-----
Q psy10052 264 LSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVL-KDSS-KPLKERFRALFTLKNIGG----- 336 (500)
Q Consensus 264 l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l-~~~~-~~~~~r~~a~~~L~~~~~----- 336 (500)
|......+.+.....|.++.|......+.. |..+ ..+..|.... .... ..+.--..|+|.|.....
T Consensus 403 L~s~peeL~QV~AsvLRNLSWRAD~nmKkv--LrE~-----GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 403 LISAPEELLQVYASVLRNLSWRADSNMKKV--LRET-----GSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HhcChHHHHHHHHHHHHhccccccccHHHH--HHhh-----hhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 776666676766777888877654322111 1111 1122333322 2222 223445667777764433
Q ss_pred ----hhhHHHHHHHhcCCCHHHHHHHHH-----------HHhccCC-------CccHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10052 337 ----KTAIQCISEAFADKSALLKHELAY-----------CLGQMKD-------SDANDILRQVLEDKSQEPMVRHEAAEA 394 (500)
Q Consensus 337 ----~~~~~~L~~~l~~~~~~vr~~a~~-----------aL~~l~~-------~~~~~~L~~~l~~~~~~~~vR~~a~~a 394 (500)
+.++..|+..|..+.+.--..+|+ .++...+ ...+..|+..|+.. ...+=.+++-+
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGT 553 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGT 553 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhh
Confidence 456777788776543222222222 2222221 23567777777654 45666777778
Q ss_pred HhhcCC-----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q psy10052 395 LGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 395 L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
|.++.. ..+++.|..++..++..+-..++.+|.++-..
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 877642 35789999999999999999999999988643
No 133
>KOG1020|consensus
Probab=92.40 E-value=24 Score=40.21 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHH
Q psy10052 103 SISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMF 182 (500)
Q Consensus 103 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~ 182 (500)
.+..|+..++.|++..-+.....|+.+ |+....+.+.+...|..++.
T Consensus 606 fvqDLLs~ln~PEWPatE~ILs~Lg~~---------------------------------Lv~~~s~ks~~~sir~asLd 652 (1692)
T KOG1020|consen 606 FVQDLLSALNLPEWPATELILSLLGKL---------------------------------LVHNFSNKSVDVSIRTASLD 652 (1692)
T ss_pred HHHHHHHHccCCcCccHHHHHHHHHHH---------------------------------HHHHhccchHHHHHHHHHHH
Confidence 345555666667666656666665543 34444455666778888998
Q ss_pred HHHcCCC
Q psy10052 183 KLRDINS 189 (500)
Q Consensus 183 ~L~~~~~ 189 (500)
.||.++.
T Consensus 653 lLG~Iaa 659 (1692)
T KOG1020|consen 653 LLGTIAA 659 (1692)
T ss_pred HHHHHHH
Confidence 8888764
No 134
>KOG1293|consensus
Probab=92.34 E-value=3.1 Score=42.45 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=80.6
Q ss_pred CCHhHHHHHHHHHhc-----------cCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC----C-------chHHHHH
Q psy10052 203 GSSLYRHEIAFVLGQ-----------MQNPSSIPALTSALEDQTQNEMVRHECAEALGAIA----T-------PECYDVL 260 (500)
Q Consensus 203 ~~~~vr~~a~~aL~~-----------~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~-------~~~~~~L 260 (500)
.+..++.+++..+-. +...+...+|++++.++ +..|...+..++.++- + ..+++.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 466677666655421 44567788899999875 3678888888876543 2 2468999
Q ss_pred HHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCh--h
Q psy10052 261 RKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGK--T 338 (500)
Q Consensus 261 ~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~--~ 338 (500)
.+++.+++..+|..+.+.|..+.+......++.. +.+++ ...+..+..|++ |.+...+...|+++-.. +
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-~~ki~------a~~i~~l~nd~d--~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL-LAKIP------ANLILDLINDPD--WAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH-HHHhh------HHHHHHHHhCCC--HHHHHHHHHHHHHhhcCcHH
Confidence 9999999999999999999866655443322211 11110 112333333433 44555555555554333 4
Q ss_pred hHHHHHHHh
Q psy10052 339 AIQCISEAF 347 (500)
Q Consensus 339 ~~~~L~~~l 347 (500)
.++.+++-.
T Consensus 538 svdfll~~~ 546 (678)
T KOG1293|consen 538 SVDFLLEKF 546 (678)
T ss_pred HHHHHHHhh
Confidence 555555543
No 135
>KOG2160|consensus
Probab=92.29 E-value=1.7 Score=41.06 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=75.7
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHcc-CCCHHHHHHHHHHHHcc--CC-------
Q psy10052 9 LIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFA-DESALLKHELAYCLGQM--KD------- 67 (500)
Q Consensus 9 ~L~~~L~~~~~~~~~R~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~--~~------- 67 (500)
.|...|++++.. +|..|++.++...- ......|+..|. +++-.+|..|+++++.+ ..
T Consensus 128 ~ll~~l~~~~~~--lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f 205 (342)
T KOG2160|consen 128 PLLGYLENSDAE--LRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF 205 (342)
T ss_pred HHHHHhcCCcHH--HHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344488888876 99999999988641 236777777886 55667888888887754 11
Q ss_pred --CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10052 68 --SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQDPVKEVSETCYLALKR 128 (500)
Q Consensus 68 --~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~ 128 (500)
......|..++++.+.+...++.++..++.+-.. .....+..+....+..+++.++.++-.
T Consensus 206 l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLS 279 (342)
T ss_pred HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHH
Confidence 2346788888888544677788888877765321 111223333444555666666666544
No 136
>KOG4500|consensus
Probab=92.21 E-value=12 Score=36.47 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=71.6
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCc----------cHHHHHHHhhc-CCC--CHHHHHHHHHHHhhcCCc--
Q psy10052 337 KTAIQCISEAFADKSALLKHELAYCLGQMKDSD----------ANDILRQVLED-KSQ--EPMVRHEAAEALGAIGDK-- 401 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~----------~~~~L~~~l~~-~~~--~~~vR~~a~~aL~~~~~~-- 401 (500)
++..+.+..++.++|..+.....-++|++...+ .+..|++++.. ... +-.++.+++.||-++.-|
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 457888899999999999999999999986543 56677777643 222 455667889999887432
Q ss_pred --------cHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 402 --------SSISILEKYAQDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 402 --------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
.....+...++-..|.|...-.-.++++...++
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 455667777777778888877777877766554
No 137
>KOG2122|consensus
Probab=92.18 E-value=21 Score=40.53 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=45.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccC-----------CCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMK-----------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG 399 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~-----------~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~ 399 (500)
-+..|++.|++.+-.+-.++|.+|.++. +..+++.|..++.++ +.++-..++.||-++-
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK--hkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK--HKMIAMGSAAALRNLL 600 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh--hhhhhhhHHHHHHHHh
Confidence 4677888888888777777887777664 345889999999887 7888888888887653
No 138
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.13 E-value=0.68 Score=34.94 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=50.6
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHcc---CC------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC---hhhHHH
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQM---KD------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD---KSSISI 106 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~---~~------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~---~~~~~~ 106 (500)
......+.+.|+.+.+|.+++..|.++ ++ +.....+...|+|+ |+.|--.|+..|+.+++ ...++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHChHHHHHH
Confidence 455666777899999999999988876 22 12345556667777 78888888888777653 246666
Q ss_pred HHHHhcCC
Q psy10052 107 LEKYAQDP 114 (500)
Q Consensus 107 L~~~l~d~ 114 (500)
|++...|.
T Consensus 82 L~~~y~~~ 89 (92)
T PF10363_consen 82 LLDEYADP 89 (92)
T ss_pred HHHHHhCc
Confidence 66655544
No 139
>KOG3678|consensus
Probab=91.85 E-value=12 Score=36.81 Aligned_cols=30 Identities=27% Similarity=0.145 Sum_probs=18.7
Q ss_pred hhHHHHHHHHhcCCccHHHHHHHHHHhHhcCC
Q psy10052 458 SDINKLKEILLNENEDLFMRYKAMFKLRDINS 489 (500)
Q Consensus 458 ~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g~ 489 (500)
.+++.|.++.. +++...-.-|-.||.-||.
T Consensus 423 GAIQaLKevaS--S~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 423 GAIQALKEVAS--SPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHHhcc
Confidence 56778887663 4444444455667777773
No 140
>KOG2032|consensus
Probab=91.70 E-value=6.4 Score=38.92 Aligned_cols=120 Identities=22% Similarity=0.235 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHc-cCCCHHHHHHHHHHHHccCC--------
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG----------KTAIQCISEAF-ADESALLKHELAYCLGQMKD-------- 67 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~----------~~~~~~L~~~l-~~~~~~vR~~a~~~L~~~~~-------- 67 (500)
...+..-..+|+.- .|..|.+.|++... +..+..++..| .+.+..|..+++.+|..+-.
T Consensus 260 ~~~la~ka~dp~a~--~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 260 LLSLANKATDPSAK--SRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHhccCchhH--HHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 44455566778774 99999999998642 23556666666 45568999999999876521
Q ss_pred ---CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------h-hhHH-------HHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 68 ---SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------K-SSIS-------ILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 68 ---~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------~-~~~~-------~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
....-.+..+++++ ++.+|.+|+..+|.+.. + ...+ .|+-.++|++|.|-.+|-..+....
T Consensus 338 ~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred hhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 23456677888888 78999999998887531 1 1121 2333469999999887777776654
No 141
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.47 E-value=1.4 Score=41.83 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHhcCCCHHHHHHHHHHHhccCC------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhc----C--------------
Q psy10052 344 SEAFADKSALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRHEAAEALGAI----G-------------- 399 (500)
Q Consensus 344 ~~~l~~~~~~vr~~a~~aL~~l~~------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~----~-------------- 399 (500)
...+.+.+..+|..++++||-++- ...++.+...+... +..+|..|++++..+ |
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD--DEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 355666667777777777765542 12345555555433 577777777776543 1
Q ss_pred -CccHHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 400 -DKSSISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 400 -~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
.......+.+++.+.++.++..|++++.++-
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0134556667776667778888888887764
No 142
>KOG1820|consensus
Probab=91.46 E-value=3.3 Score=44.45 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=19.6
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 403 SISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 403 ~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
..+.+...+..++..+|..+...+..+..
T Consensus 695 ~~~~~~~~l~~~~~~~r~~~l~~i~~~~~ 723 (815)
T KOG1820|consen 695 MVPSLREALELKEREIRSEELLVIKLLFS 723 (815)
T ss_pred cchhhHhhccccchhhHHHHhhhhheeec
Confidence 45667777777777777777766665543
No 143
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.35 E-value=1.1 Score=42.53 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=65.5
Q ss_pred HHccCCCHHHHHHHHHHHHccC--C----CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC------------C------
Q psy10052 45 EAFADESALLKHELAYCLGQMK--D----SDANDILRQVLEDKSQEPMVRHEAAEALGAIG------------D------ 100 (500)
Q Consensus 45 ~~l~~~~~~vR~~a~~~L~~~~--~----~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~------------~------ 100 (500)
..+.++++.+|..++++||-.. + .+.++.+...++.. +..|+..|++++..+- .
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD--DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 5678999999999999999763 1 33456677777555 7899999999987642 1
Q ss_pred -hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 101 -KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 101 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
......+.+.+.+.++.++..|+++++++-
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 135567888888889999999999999974
No 144
>KOG4199|consensus
Probab=91.30 E-value=13 Score=35.03 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=65.8
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--Cc---------cHHHHHHHhhc-C-CCHhHHHHHHHHHHHhhhhhhcc
Q psy10052 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIG--DK---------SSISILEKYAQ-D-PVKEVSETCYLALKRIQFVTEED 436 (500)
Q Consensus 370 ~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~~---------~~~~~L~~~l~-d-~~~~vr~~A~~aL~~l~~~~~~~ 436 (500)
..+.++.++...+.+|.|-.+++.++..+. .| .......+.++ . ....|+..|++.+++|-......
T Consensus 329 g~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred ChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 345555555444447888777777766542 21 22233344442 3 35679999999999997654321
Q ss_pred cccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 437 KQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
.+ +| -...++.|+..-+.+|++ ++..|-.||.++|
T Consensus 409 ~~-----~~----------l~~GiE~Li~~A~~~h~t--ce~~akaALRDLG 443 (461)
T KOG4199|consen 409 RT-----IL----------LANGIEKLIRTAKANHET--CEAAAKAALRDLG 443 (461)
T ss_pred cc-----hH----------HhccHHHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 11 00 135678999988888886 8999999999998
No 145
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=91.25 E-value=4.2 Score=36.23 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccCCC---ccHHHHHHHhhcCCCCHHHHHHH-HHHHhhcC--CccHHHHHHHhhcC
Q psy10052 340 IQCISEAFADKSALLKHELAYCLGQMKDS---DANDILRQVLEDKSQEPMVRHEA-AEALGAIG--DKSSISILEKYAQD 413 (500)
Q Consensus 340 ~~~L~~~l~~~~~~vr~~a~~aL~~l~~~---~~~~~L~~~l~~~~~~~~vR~~a-~~aL~~~~--~~~~~~~L~~~l~d 413 (500)
...+..++.++..+.|..++..++..... ..++.+...+..-+ +|.+--.. ...++.+. .+...+.+.+++++
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~-~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s 131 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTEEDLELLEKWLPDID-NWATCDSLCSKLLGPLLKKHPEALELLEKWAKS 131 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCC-CHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHC
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCC-cchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 34555667777777777777777653321 23556666666443 67776665 33344432 15667777778888
Q ss_pred CCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC--Chh
Q psy10052 414 PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN--SVE 491 (500)
Q Consensus 414 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g--~~~ 491 (500)
+++.+|..+...+-...... ........+...+ .+++.++|....++|..+| .++
T Consensus 132 ~~~w~rR~~~v~~~~~~~~~---------------------~~~~~l~~~~~~~--~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 132 DNEWVRRAAIVMLLRYIRKE---------------------DFDELLEIIEALL--KDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp SSHHHHHHHHHCTTTHGGGC---------------------HHHHHHHHHHHCT--TGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred CcHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHhCHH
Confidence 88888877766654432210 0012222222222 4556678888888888886 444
Q ss_pred hHH
Q psy10052 492 STL 494 (500)
Q Consensus 492 ~~~ 494 (500)
.+.
T Consensus 189 ~v~ 191 (213)
T PF08713_consen 189 EVL 191 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 146
>KOG2160|consensus
Probab=90.93 E-value=8.2 Score=36.62 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=73.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHHHHHHHhh-cCCCHh
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYA-QDPVKE 417 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~ 417 (500)
....++..+++.+..+|..|++.+|... .+ +|.++...++. .+++.|...+ .+.+..
T Consensus 125 gl~~ll~~l~~~~~~lR~~Aa~Vigt~~------------qN---NP~~Qe~v~E~-------~~L~~Ll~~ls~~~~~~ 182 (342)
T KOG2160|consen 125 GLVPLLGYLENSDAELRELAARVIGTAV------------QN---NPKSQEQVIEL-------GALSKLLKILSSDDPNT 182 (342)
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHH------------hc---CHHHHHHHHHc-------ccHHHHHHHHccCCCch
Confidence 3455555777888888888887777542 22 46666655543 1455565555 567778
Q ss_pred HHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 418 VSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 418 vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
+|..|..|++.+-....+....- ..-.....|+.+|..++.+-..+.++++=++.+
T Consensus 183 ~r~kaL~AissLIRn~~~g~~~f--------------l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 183 VRTKALFAISSLIRNNKPGQDEF--------------LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHH--------------HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 88999999998866554322110 011347788888887667777888888877765
No 147
>KOG0414|consensus
Probab=90.55 E-value=1.4 Score=47.84 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcC------CcchHHHHHHHcc-CCCHHHHHHHHHHHHccCC------CccHHHHHHHhhccCCCHHHHH
Q psy10052 23 ERFRALFTLKNIG------GKTAIQCISEAFA-DESALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRH 89 (500)
Q Consensus 23 ~R~~A~~~L~~~~------~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~L~~~~~d~~vr~ 89 (500)
.+..|-..|+++- .....+.|...++ +++|.+|..++-++|.+.- +.-.+.|..-|.|+ ++.||.
T Consensus 939 Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~--~~~vRk 1016 (1251)
T KOG0414|consen 939 LQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDE--SPSVRK 1016 (1251)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCc--cHHHHH
Confidence 8889999998865 2457788888886 9999999999999987631 23457778888888 799999
Q ss_pred HHHHHHHhc------CChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 90 EAAEALGAI------GDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 90 ~a~~aL~~~------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
.|+-.|..+ .-.+.++....++.||++.++..|-.-+..+..
T Consensus 1017 ta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1017 TALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred HHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 999888753 445777888889999999998888777666654
No 148
>KOG1820|consensus
Probab=90.37 E-value=4.3 Score=43.63 Aligned_cols=175 Identities=16% Similarity=0.097 Sum_probs=111.7
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCc----------chHHHHHHHc-cCCCHHHHHHHHHHHHccCC---------
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGGK----------TAIQCISEAF-ADESALLKHELAYCLGQMKD--------- 67 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~----------~~~~~L~~~l-~~~~~~vR~~a~~~L~~~~~--------- 67 (500)
+.|...+.|++ |..|..|++.+...-.+ ..+..+++.. +|.+..|-..++..|..+..
T Consensus 256 ~~l~t~~~s~~--WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKK--WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccc--hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 44555566665 56999999998875321 2333444443 58888888888888877632
Q ss_pred -CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhcccc
Q psy10052 68 -SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTG 142 (500)
Q Consensus 68 -~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~ 142 (500)
....+.|...+.+. -+.+|..+..++-.++. ....+.+..++++.+|.++..+...+.+.-.....
T Consensus 334 ~~~v~p~lld~lkek--k~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~------- 404 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEK--KSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP------- 404 (815)
T ss_pred HHhhcchHHHHhhhc--cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC-------
Confidence 24567888888887 57888877777766654 35677888899999999999999888775321110
Q ss_pred CcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcC---CChhhHHHHHhhcc
Q psy10052 143 NIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI---NSVESTLALTEGLS 201 (500)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~---~~~~~i~~l~~~L~ 201 (500)
...+.... ...++.++....|. +..+|.+|..+++.+ .+.+.+..++..+.
T Consensus 405 ----~~~~~~t~--~~l~p~~~~~~~D~--~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 405 ----KTVEKETV--KTLVPHLIKHINDT--DKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred ----cCcchhhH--HHHhHHHhhhccCC--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 01111111 23456666666554 445899887776643 34455555554443
No 149
>KOG4653|consensus
Probab=90.37 E-value=15 Score=39.07 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCC----------hhhHHHHHhhccCCCHhHHHHHHH---HHhccCCCCcHHHHHHHhhcc-CC-CHH
Q psy10052 175 FMRYKAMFKLRDINS----------VESTLALTEGLSHGSSLYRHEIAF---VLGQMQNPSSIPALTSALEDQ-TQ-NEM 239 (500)
Q Consensus 175 ~~r~~A~~~L~~~~~----------~~~i~~l~~~L~~~~~~vr~~a~~---aL~~~~~~~~i~~L~~~l~~~-~~-~~~ 239 (500)
.+|.+++..+++.-. ...+...+..|+|.++.|--.+++ .|..+.++..+|.+.+...+. +. .++
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d 821 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTD 821 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCcc
Confidence 367788777765322 245666777777777777777776 556666777777777744321 11 123
Q ss_pred HHHHHHHHHhhcCC----------chHHHHHHHhhcCCcHHHHHHHHHHhhh
Q psy10052 240 VRHECAEALGAIAT----------PECYDVLRKYLSDEKVVVRQSCEIALDM 281 (500)
Q Consensus 240 vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~al~~ 281 (500)
.|...-++++++.. ...+..+...+++|+...|..+...+|.
T Consensus 822 ~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 822 YRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred ceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 33333344433221 1123344445566666666666666653
No 150
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=90.27 E-value=13 Score=33.09 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=9.4
Q ss_pred HHHHHhhcCCCHhHHHHHHH
Q psy10052 405 SILEKYAQDPVKEVSETCYL 424 (500)
Q Consensus 405 ~~L~~~l~d~~~~vr~~A~~ 424 (500)
+.+.++..+++..+|..|+.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~ 137 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAIL 137 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHH
Confidence 44444444444444444443
No 151
>KOG0414|consensus
Probab=90.03 E-value=2.5 Score=46.13 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=65.1
Q ss_pred hHHHHHHHcc----CCCHHHHHHHHHHHHccCC------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC--h----h
Q psy10052 39 AIQCISEAFA----DESALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD--K----S 102 (500)
Q Consensus 39 ~~~~L~~~l~----~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~--~----~ 102 (500)
..|.+.+.-+ .++|.++..|--+|+++-. ....+.|+..++..+ +|.+|..++-++|.+.- + .
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp-~p~IRsN~VvalgDlav~fpnlie~ 998 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSP-SPRIRSNLVVALGDLAVRFPNLIEP 998 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-Cceeeecchheccchhhhcccccch
Confidence 3444455442 4578888888888888743 345688888888544 78888888888887642 2 3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 103 SISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 103 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
..+.|...|.|+++.||..|+..|..+-
T Consensus 999 ~T~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 999 WTEHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred hhHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 4456777788999999999888887754
No 152
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.64 E-value=0.59 Score=36.90 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.4
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
..+..|+++|..+. |+.+..-|+.=+|.+.. .++-..+.++++++|+.||..|..++.++-
T Consensus 43 ~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45666777774443 56666666666666421 134567888999999999999999998764
No 153
>KOG1949|consensus
Probab=89.58 E-value=1 Score=46.08 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=85.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcC---Cc------------chHHHHHHHccCCCHHHHHHHHHHHHccC------
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIG---GK------------TAIQCISEAFADESALLKHELAYCLGQMK------ 66 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~---~~------------~~~~~L~~~l~~~~~~vR~~a~~~L~~~~------ 66 (500)
+-|...|+-+|.. +|..|+..+-+.- ++ .....|-++|+|+-|.||..|+..+..+-
T Consensus 177 p~l~R~L~a~Ns~--VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSE--VRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCchh--hhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3455677888876 9999999998743 22 23455667889999999999998887652
Q ss_pred -CCccHHHHHHHhhc----cCCCHHHHHHHHHHHHhcCC-h-------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 67 -DSDANDILRQVLED----KSQEPMVRHEAAEALGAIGD-K-------SSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 67 -~~~~~~~L~~~L~~----~~~d~~vr~~a~~aL~~~~~-~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
.+..+..|+.-+.| +. ...||....+.|..+.. + ..+|.|-..+.|....||.++..-|.++...
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 23333333332222 22 45799999999888753 2 2345555567999999999999999988753
No 154
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=89.51 E-value=1.2 Score=36.46 Aligned_cols=93 Identities=18% Similarity=0.121 Sum_probs=58.5
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCCc---c----HHHHHHHhhccCC-CHHHHHHHHHHHHhcCChhhHHHHH
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDSD---A----NDILRQVLEDKSQ-EPMVRHEAAEALGAIGDKSSISILE 108 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~---~----~~~L~~~L~~~~~-d~~vr~~a~~aL~~~~~~~~~~~L~ 108 (500)
.+.+..|+++|+++...-+...+..|...-.+. + ...|-...+.+.. ...-+..|++.||.+...-.+..|+
T Consensus 21 a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI 100 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLI 100 (154)
T ss_dssp HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHH
Confidence 356778888888776555556666666542221 1 2444455544321 2345889999999997767789999
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q psy10052 109 KYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 109 ~~l~d~~~~vr~~a~~aL~~~ 129 (500)
.+|.++|..+...|+.+|.+.
T Consensus 101 ~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 101 DLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HGG--G-TTTHHHHHHHHHT-
T ss_pred HHHcCCcHHHHHHHHHHHHhh
Confidence 999998999999999999874
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.16 E-value=7.4 Score=39.79 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCC--c----cHHHHHHHhhcCCCCHHHHHHHHHHH---hhcCCccHHHHH
Q psy10052 337 KTAIQCISEAFADKSALLKHELAYCLGQMKDS--D----ANDILRQVLEDKSQEPMVRHEAAEAL---GAIGDKSSISIL 407 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~--~----~~~~L~~~l~~~~~~~~vR~~a~~aL---~~~~~~~~~~~L 407 (500)
+.++..++.+++|+|..||..|++.|..++.. + ....|..+|... ++.....+=.+| -++.....+..+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td--d~~E~~~v~~sL~~ll~~d~k~tL~~l 135 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD--DPVELDAVKNSLMSLLKQDPKGTLTGL 135 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 56888999999999999999999999999753 3 456667777644 555555444444 444444555555
Q ss_pred HHhhc---CCCHhHHHHHHHHHH
Q psy10052 408 EKYAQ---DPVKEVSETCYLALK 427 (500)
Q Consensus 408 ~~~l~---d~~~~vr~~A~~aL~ 427 (500)
...+. ..+..+|..+..-|.
T Consensus 136 f~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 136 FSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHhcccCchHHHHHHHHHHH
Confidence 55443 467788988876663
No 156
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.14 E-value=4.1 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=9.1
Q ss_pred cCCCHHHHHHHHHHHHHhc
Q psy10052 112 QDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 112 ~d~~~~vr~~a~~aL~~~~ 130 (500)
.|++..||.+..++|..++
T Consensus 165 ~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 4445555555555555544
No 157
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=88.19 E-value=2.1 Score=32.27 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=51.0
Q ss_pred CCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcCChhh
Q psy10052 413 DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVES 492 (500)
Q Consensus 413 d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g~~~~ 492 (500)
+....+|..|+.-|+.+-..-... + +. -.+..+..|.+.+.|++......+.|+.+|..+|. |+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~--------~----~~---L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~-~~ 80 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSS--------Y----PT---LQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP-EA 80 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccc--------c----ch---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 456778888888888876543211 0 00 12478899999999999999999999999999964 77
Q ss_pred HHHhh
Q psy10052 493 TLALT 497 (500)
Q Consensus 493 ~~~l~ 497 (500)
|..++
T Consensus 81 vr~~i 85 (92)
T PF07571_consen 81 VRALI 85 (92)
T ss_pred HHHhh
Confidence 77653
No 158
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=87.93 E-value=0.93 Score=27.81 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=20.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 102 SSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 102 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+.++.|+++++++++.++..++++|+++.
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35667777777777777777777777653
No 159
>KOG1949|consensus
Probab=87.57 E-value=1.7 Score=44.67 Aligned_cols=130 Identities=20% Similarity=0.131 Sum_probs=82.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc---CChh------------hHHHHHHHhcCCCHHHHHHHHHHHHHhchhccch
Q psy10052 72 DILRQVLEDKSQEPMVRHEAAEALGAI---GDKS------------SISILEKYAQDPVKEVSETCYLALKRIQFVTEED 136 (500)
Q Consensus 72 ~~L~~~L~~~~~d~~vr~~a~~aL~~~---~~~~------------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 136 (500)
|.|-..|+-. +..||..|+..+-.. .+++ ....+.++|.|+-|.||..|+..+.++-..
T Consensus 177 p~l~R~L~a~--Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---- 250 (1005)
T KOG1949|consen 177 PILWRGLKAR--NSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK---- 250 (1005)
T ss_pred HHHHHhhccC--chhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----
Confidence 5566677777 688999999988763 2222 235578899999999999999999887532
Q ss_pred hhccccCcCCCCCCCCCCCCcccHHHHHHHhcC---CCcCHHHHHHHHHHHHcCCC----hhhHH----HHHhhccCCCH
Q psy10052 137 KQKDTGNIYGSVDPTPPLDDVSDINKLKEILLN---ENEDLFMRYKAMFKLRDINS----VESTL----ALTEGLSHGSS 205 (500)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d---~~~~~~~r~~A~~~L~~~~~----~~~i~----~l~~~L~~~~~ 205 (500)
|+-.-| ...+..++..+.| .+....+|.+.+..|-.+-. ..+++ .+-..|.|.+.
T Consensus 251 --------fWe~iP------~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se 316 (1005)
T KOG1949|consen 251 --------FWEMIP------PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSE 316 (1005)
T ss_pred --------HHHHcC------HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccch
Confidence 221111 1223333333221 12233578888777665432 23333 34445568889
Q ss_pred hHHHHHHHHHhccCCC
Q psy10052 206 LYRHEIAFVLGQMQNP 221 (500)
Q Consensus 206 ~vr~~a~~aL~~~~~~ 221 (500)
.||.+++..|.++.+-
T Consensus 317 ~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 317 KVRVAFVDMLLKIKAV 332 (1005)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999988777644
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.46 E-value=3.2 Score=42.33 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHcc-CC-----CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh------hhHHHHHHHhcCCCHH
Q psy10052 50 ESALLKHELAYCLGQM-KD-----SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------SSISILEKYAQDPVKE 117 (500)
Q Consensus 50 ~~~~vR~~a~~~L~~~-~~-----~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~ 117 (500)
.+..++.-|..-+.++ .. ..++..++.+.+|+ |..||..|++.|..++.. .....|.++|+.+++.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDe--d~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDE--DVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-S--SHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcc--cHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHH
Confidence 4677777777777765 21 45678888888887 788888888888887642 3556777788877776
Q ss_pred HHHHHHHHHHHhc
Q psy10052 118 VSETCYLALKRIQ 130 (500)
Q Consensus 118 vr~~a~~aL~~~~ 130 (500)
.....-.+|..+-
T Consensus 112 E~~~v~~sL~~ll 124 (556)
T PF05918_consen 112 ELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 161
>KOG2956|consensus
Probab=87.01 E-value=6.8 Score=38.52 Aligned_cols=120 Identities=16% Similarity=0.059 Sum_probs=80.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCc----------chHHHHHHHccCCCHHHHHHHHHH----HHccCCCccHHH
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGGK----------TAIQCISEAFADESALLKHELAYC----LGQMKDSDANDI 73 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vR~~a~~~----L~~~~~~~~~~~ 73 (500)
..+.+.|.+...+ ..|..|++.|.++-.. -++..+++.-+|.+..+-..|.+. |+.+-....+..
T Consensus 332 ~~l~EvL~d~~~~-~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~ 410 (516)
T KOG2956|consen 332 LLLLEVLSDSEDE-IIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN 410 (516)
T ss_pred HHHHHHHccchhh-HHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH
Confidence 4566777773332 5999999999997632 345566666667766555554444 555555566677
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 74 LRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 74 L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+..++-.. |...-..++..+.++-. ++..|.+++...+....||..|+-+|..+-
T Consensus 411 i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 411 ISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 77777665 44444455555555421 356788888889999999999999997654
No 162
>KOG1243|consensus
Probab=86.78 E-value=2.7 Score=43.32 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=57.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhccCCCc--------cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------ccHHH
Q psy10052 342 CISEAFADKSALLKHELAYCLGQMKDSD--------ANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSIS 405 (500)
Q Consensus 342 ~L~~~l~~~~~~vr~~a~~aL~~l~~~~--------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------~~~~~ 405 (500)
.+..+-.|++..+|....-+||+++... .+....+.+.|+ -..-|.+++.+|..... .++++
T Consensus 412 ~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdp--f~paR~a~v~~l~at~~~~~~~~va~kIlp 489 (690)
T KOG1243|consen 412 YLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDP--FVPARKAGVLALAATQEYFDQSEVANKILP 489 (690)
T ss_pred HHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCC--CCCchhhhhHHHhhcccccchhhhhhhccc
Confidence 3333334666677777777787776542 223334455555 56778888888876543 24556
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 406 ILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 406 ~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
.+..+.-|++..||..|..++...-
T Consensus 490 ~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 490 SLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cccccccCcccchhhHHHHHHHHHH
Confidence 6777778899999999998887653
No 163
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.39 E-value=6.2 Score=33.39 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=66.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--cchHHHHHHHcc-----CCCHHHHHHHHHHHHccC-C-----CccHHH
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG--KTAIQCISEAFA-----DESALLKHELAYCLGQMK-D-----SDANDI 73 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~--~~~~~~L~~~l~-----~~~~~vR~~a~~~L~~~~-~-----~~~~~~ 73 (500)
.+.|...|++... |.+|..+++.||-+|. +-.......... +++...........+... . .-++..
T Consensus 12 L~~L~~iLk~e~s-~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~ 90 (160)
T PF11865_consen 12 LDILLNILKTEQS-QSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINA 90 (160)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHH
Confidence 4567788887744 6799999999999983 211111111111 111112222222112111 1 235678
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHhc----CC------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 74 LRQVLEDKSQEPMVRHEAAEALGAI----GD------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 74 L~~~L~~~~~d~~vr~~a~~aL~~~----~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
|...|+|++ -..-...++.++-.+ +. +..+|.++..+...+...++....-|+.+
T Consensus 91 L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 91 LMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888874 233344445554332 22 25677777888777778888877777654
No 164
>KOG4199|consensus
Probab=85.72 E-value=33 Score=32.53 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 372 DILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 372 ~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
...++.++.......|+..|++.+-++.. ...++.|+.......+.++..|..+|+-++...
T Consensus 375 ~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 375 DLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 34445554332356778888888776632 123456666666778889999999999887543
No 165
>KOG1243|consensus
Probab=85.71 E-value=1 Score=46.17 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--------cchHHHHHHHccCCCHHHHHHHHHHHHc
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG--------KTAIQCISEAFADESALLKHELAYCLGQ 64 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vR~~a~~~L~~ 64 (500)
++.|.++++.+|.. +|..-+..+.++.+ +...+.+...+.|.++.+|...+..+..
T Consensus 332 ~p~l~kLF~~~Dr~--iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~ 395 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQ--IRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAV 395 (690)
T ss_pred hhhHHHHhcCcchH--HHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 44455555555554 55555555554432 2345555555555555555555555443
No 166
>KOG1967|consensus
Probab=84.79 E-value=5.9 Score=42.25 Aligned_cols=129 Identities=17% Similarity=0.112 Sum_probs=79.6
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHh----cCC-------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchh
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGA----IGD-------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDK 137 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~----~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ 137 (500)
..+|.|.+.+... +..++..-..+|.. .+. +...|.|++.|.=+|..||..+...+...-......
T Consensus 867 ~ivP~l~~~~~t~--~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL- 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETA--PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL- 943 (1030)
T ss_pred hhHHHHHHHhccC--CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc-
Confidence 4578888888744 34456666666554 221 356788999999999999988888876543211100
Q ss_pred hccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcC-HHHHHHHHHHHHcCCC-----------hhhHHHHHhhccCCCH
Q psy10052 138 QKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED-LFMRYKAMFKLRDINS-----------VESTLALTEGLSHGSS 205 (500)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~-~~~r~~A~~~L~~~~~-----------~~~i~~l~~~L~~~~~ 205 (500)
...+. ...++.++..-.+++.+ ..+|..|++.|..+-. ++.+..|.+.|+|+..
T Consensus 944 ---~t~~~-----------~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR 1009 (1030)
T KOG1967|consen 944 ---QTEHL-----------STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR 1009 (1030)
T ss_pred ---chHHH-----------hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH
Confidence 00000 12344444444444432 5678888888765432 3677777878877777
Q ss_pred hHHHHHHHH
Q psy10052 206 LYRHEIAFV 214 (500)
Q Consensus 206 ~vr~~a~~a 214 (500)
.||.+|+++
T Consensus 1010 lVR~eAv~t 1018 (1030)
T KOG1967|consen 1010 LVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHH
Confidence 788877765
No 167
>KOG2933|consensus
Probab=83.46 E-value=11 Score=35.11 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=74.7
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHcc---CC-------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh------
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQM---KD-------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------ 101 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~---~~-------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~------ 101 (500)
.++...+..|.+++|......+..+..+ .. ..++-.+++-+++. -..|-+.|+-+++.+-..
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777888998888766665543 22 23455566666666 577888888888876421
Q ss_pred hhHHHHHH-Hh---cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHH
Q psy10052 102 SSISILEK-YA---QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMR 177 (500)
Q Consensus 102 ~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r 177 (500)
+....++. ++ ..++..||..|-.+|..+-..-.. ...++.|+..+.+ .++.+|
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------------------~~~L~~L~~~~~~--~n~r~r 222 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------------------QKLLRKLIPILQH--SNPRVR 222 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------------------HHHHHHHHHHHhh--hchhhh
Confidence 12333333 33 455688999999999887543211 3357788888754 344455
Q ss_pred HHHHHH
Q psy10052 178 YKAMFK 183 (500)
Q Consensus 178 ~~A~~~ 183 (500)
..+...
T Consensus 223 ~~a~~~ 228 (334)
T KOG2933|consen 223 AKAALC 228 (334)
T ss_pred hhhhcc
Confidence 555443
No 168
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.67 E-value=1.9 Score=44.29 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcC------CcchHHHHHHHcc-CCCHHHHHHHHHHHHccCC------CccHHHHHHHhhccCCCHHHHH
Q psy10052 23 ERFRALFTLKNIG------GKTAIQCISEAFA-DESALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRH 89 (500)
Q Consensus 23 ~R~~A~~~L~~~~------~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~L~~~~~d~~vr~ 89 (500)
....|-..|.+.- ..+-.|.|+..++ +|+|.+|..|+-+||.+-- .+-...|.+-|.|+ +..||+
T Consensus 912 lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De--~~~V~r 989 (1128)
T COG5098 912 LQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDE--DADVRR 989 (1128)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcch--hhHHHH
Confidence 7777777777653 2457888899886 9999999999999998731 34457788888888 789999
Q ss_pred HHHHHHHh------cCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 90 EAAEALGA------IGDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 90 ~a~~aL~~------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
.+.-.+.- +.-.+..+.+..+|.|+|..+...|..-+..+..
T Consensus 990 tclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 990 TCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 98877643 4456778889999999999998888888877764
No 169
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=82.44 E-value=2.3 Score=25.95 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=17.4
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 403 SISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 403 ~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
.++.|.+++.+.++.++..++++|+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456666666666666666666666665
No 170
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=82.34 E-value=19 Score=30.80 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=66.3
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhc
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 112 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~ 112 (500)
.+.+++.++....-.++.-...+...|........... +++|...-.|+.||..|++.|..+.+.+ .++.|+++|+
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~a-LeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK 115 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQA-LELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLK 115 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHH-HHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46688888888887777777788888888866554343 5566554337899999999999998864 5677888885
Q ss_pred C----CCHHHHHHHHHHHHH
Q psy10052 113 D----PVKEVSETCYLALKR 128 (500)
Q Consensus 113 d----~~~~vr~~a~~aL~~ 128 (500)
- +++-++.-.-.|+.+
T Consensus 116 yE~~~ds~La~FLl~Ral~n 135 (171)
T cd00872 116 YEPYHDSDLVRFLLKRALRN 135 (171)
T ss_pred cccccCCHHHHHHHHHHhcC
Confidence 4 346666666666654
No 171
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.94 E-value=63 Score=32.25 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=65.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----------------------ccHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMKDS-----------------------DANDILRQVLEDKSQEPMVRHEAAEAL 395 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~-----------------------~~~~~L~~~l~~~~~~~~vR~~a~~aL 395 (500)
.++.|+++|.+ +.+...++++++-+-.+ ..+|.|++.+++. +...|..-+.||
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~AL 347 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHHHH
Confidence 45566777766 55677777777655332 1567788777765 455888888888
Q ss_pred hhcCC-----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 396 GAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 396 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
+.+-. ++.+|.|.+.+.-++..++..+...|..+-...
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 76522 467899999998889999999999999886543
No 172
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.20 E-value=2.2 Score=26.73 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=18.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHH
Q psy10052 102 SSISILEKYAQDPVKEVSETCYLA 125 (500)
Q Consensus 102 ~~~~~L~~~l~d~~~~vr~~a~~a 125 (500)
.....+...+.|+++.||.+|++.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 456677778888888888888765
No 173
>KOG2973|consensus
Probab=80.12 E-value=28 Score=32.51 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=30.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHcc-CC---------CccHHHHHHHhhccCCCHHHHHHHHHHHHhc
Q psy10052 40 IQCISEAFADESALLKHELAYCLGQM-KD---------SDANDILRQVLEDKSQEPMVRHEAAEALGAI 98 (500)
Q Consensus 40 ~~~L~~~l~~~~~~vR~~a~~~L~~~-~~---------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~ 98 (500)
...+.+++.+.+|.||..|+..+..+ +. ...++.+.+++.+. ++ -..|+.+|+++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnl 69 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNL 69 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHH
Confidence 34566677777777777777665544 21 23455566666655 33 23344444444
No 174
>KOG1932|consensus
Probab=79.97 E-value=1.1e+02 Score=34.19 Aligned_cols=220 Identities=17% Similarity=0.086 Sum_probs=117.3
Q ss_pred HHHHHc-cCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh----hhHHHHHHHh-----
Q psy10052 42 CISEAF-ADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK----SSISILEKYA----- 111 (500)
Q Consensus 42 ~L~~~l-~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~----~~~~~L~~~l----- 111 (500)
.....| .|.|-..+.+|++.|...........|...|.|+.--..+|.+|+.+|++.... .-.+.|++..
T Consensus 646 Mw~~QLr~drDVvAQ~EAI~~le~~p~~~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc 725 (1180)
T KOG1932|consen 646 MWVYQLRQDRDVVAQMEAIESLEALPSTASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFC 725 (1180)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHcCCcchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhc
Confidence 444555 377777778888888877766666777777777643456788888888776543 1123333321
Q ss_pred -cC------------CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhc--CC----Cc
Q psy10052 112 -QD------------PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILL--NE----NE 172 (500)
Q Consensus 112 -~d------------~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~--d~----~~ 172 (500)
++ +...|+.+.-.+++.+...+..-+ ....+.|+.+|+ |. -+
T Consensus 726 ~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~lR~~~g~cp-------------------~~V~~FlLdLlkyNDNs~N~YS 786 (1180)
T KOG1932|consen 726 SKDSTIPKSNNFSNFQEYFVQCAIPVAFASLRGREGKCP-------------------KEVKAFLLDLLKYNDNSFNSYS 786 (1180)
T ss_pred cccCCCCCcCccccHHHHHHHHhhHHHHHHhccccCCCh-------------------HHHHHHHHHHhhcccCCCCccc
Confidence 11 113466666666766654322111 334566667763 21 14
Q ss_pred CHHHHHHHHHHHHcCCChh-hHHHHHhhccC--CCHhHHH---------------------------HHHHHHhccCCCC
Q psy10052 173 DLFMRYKAMFKLRDINSVE-STLALTEGLSH--GSSLYRH---------------------------EIAFVLGQMQNPS 222 (500)
Q Consensus 173 ~~~~r~~A~~~L~~~~~~~-~i~~l~~~L~~--~~~~vr~---------------------------~a~~aL~~~~~~~ 222 (500)
|.+.|..-+++|+..-.+. ..+.....+.+ -+..++. .+++.+++.++-.
T Consensus 787 D~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei~r~L~~e~l~pS~k~ii~~~~l~~~~~l~k~~hl~ 866 (1180)
T KOG1932|consen 787 DDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEITRLLNMEKLMPSFKHIIKVSALKAIRELQKSGHLP 866 (1180)
T ss_pred hHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHHHHHHHHHhhchhhhceEEeeechhhhhhhhccccc
Confidence 5677888888887643321 11221211111 1222222 1222223333333
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHhhcCC----chHHHHHHHhh-cCCcHHHHHHHHHHhh
Q psy10052 223 SIPALTSALEDQTQNEMVRHECAEALGAIAT----PECYDVLRKYL-SDEKVVVRQSCEIALD 280 (500)
Q Consensus 223 ~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l-~~~~~~vr~~a~~al~ 280 (500)
..|.+..-......-..+|..|.......+. ...++.+.+.+ .++++.+|......+.
T Consensus 867 s~p~~~~~~a~~~~~vd~r~~a~~~~v~~~~~~~~~~~l~~~leil~~~~dp~~R~~i~~ml~ 929 (1180)
T KOG1932|consen 867 SLPELLESYAEEGSFVDVRICAEELNVDLGGVDGSPDDLAYILEILENDPDPVIRHKILDMLS 929 (1180)
T ss_pred cCchhhhccccccchhhhHHHhhhhhhhhcccCCChHHHHHHhhhcccCcchHHHHHHHHHhh
Confidence 3333333222222235678888777766554 33455555555 4778899988777665
No 175
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=79.85 E-value=5.9 Score=29.87 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHH
Q psy10052 266 DEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQ 341 (500)
Q Consensus 266 ~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~ 341 (500)
+++|.+|..|+..|+.+....+.... .-.......+.+.+.|++.++...+.|+..|..+| ++++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~---------~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG-~~~vr 82 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYP---------TLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG-PEAVR 82 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccc---------hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-HHHHH
Confidence 44678888887777765433221000 00012234677888888888999999999999985 44444
No 176
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=79.85 E-value=37 Score=28.91 Aligned_cols=92 Identities=13% Similarity=-0.037 Sum_probs=58.0
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhc
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 112 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~ 112 (500)
.+.+++.++....+-+..-...+...|........... +++|...-.|+.||..|++.|..+.+.+ .++.|+++|+
T Consensus 37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~A-LeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLIA-LELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALK 115 (169)
T ss_pred CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHHH-HHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45677877775432222334456677777765554444 4445443226889999999999998764 5778888885
Q ss_pred CC----CHHHHHHHHHHHHH
Q psy10052 113 DP----VKEVSETCYLALKR 128 (500)
Q Consensus 113 d~----~~~vr~~a~~aL~~ 128 (500)
-+ .+-++.-.-.|+.+
T Consensus 116 yE~~~~s~L~~FLl~RAl~n 135 (169)
T cd00869 116 FELYLKSALVRFLLSRSLVS 135 (169)
T ss_pred ccccCcChHHHHHHHHHhcC
Confidence 43 35556555555554
No 177
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=79.46 E-value=70 Score=31.89 Aligned_cols=78 Identities=9% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHccCCCccHHHHHHHhhccC-CCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 52 ALLKHELAYCLGQMKDSDANDILRQVLEDKS-QEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 52 ~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~-~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+......+..|......++++.+..++.|-- +++. |.....--+. .+++....++.+|+.+|..+...+...|+.+-
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~-~~~~f~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDT-RVKLFHDDAL-LKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchH-HHHHHHHHhh-ccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 4455555556666666666666666555420 0221 1111111111 22344556667888889999999999998875
Q ss_pred h
Q psy10052 131 F 131 (500)
Q Consensus 131 ~ 131 (500)
.
T Consensus 130 ~ 130 (429)
T cd00256 130 C 130 (429)
T ss_pred h
Confidence 3
No 178
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.41 E-value=14 Score=35.19 Aligned_cols=44 Identities=16% Similarity=0.029 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 88 RHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 88 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
+...+..+...........++++++.+|..++..|...|+.+-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 91 RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33344444443333456677778899999999999999998754
No 179
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.30 E-value=20 Score=30.26 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHhc-----CCCHHHHHHHHHHHhcc-CC-----CccHHH
Q psy10052 307 ILLIGQVLKDSSKPLKERFRALFTLKNIGG--KTAIQCISEAFA-----DKSALLKHELAYCLGQM-KD-----SDANDI 373 (500)
Q Consensus 307 ~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~--~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~l-~~-----~~~~~~ 373 (500)
+..|..+++.+ .++..|..+++.+|.+|. +-..+....... +.+...........+.. .. .-++..
T Consensus 12 L~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~ 90 (160)
T PF11865_consen 12 LDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINA 90 (160)
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHH
Confidence 44677788877 458899999999999984 111121111111 11111222222211211 11 126788
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhc----CC------ccHHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 374 LRQVLEDKSQEPMVRHEAAEALGAI----GD------KSSISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 374 L~~~l~~~~~~~~vR~~a~~aL~~~----~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
|.+.++|++ -..-+..++.|+..+ +. ++.+|.+...++..++..++.-...|+.+
T Consensus 91 L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 91 LMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888764 334444666665544 22 36777788888766668888777776665
No 180
>KOG0413|consensus
Probab=77.88 E-value=4.4 Score=43.35 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHcc--CC----CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCCHHH
Q psy10052 51 SALLKHELAYCLGQM--KD----SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------KSSISILEKYAQDPVKEV 118 (500)
Q Consensus 51 ~~~vR~~a~~~L~~~--~~----~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~v 118 (500)
.+.+|.+++-.|+.+ .+ ...+|.|++-|+-.. +..+|...+-+++.++. ..++|.+...|.||++-|
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~-~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iV 1022 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNT-AHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIV 1022 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh-HHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHH
Confidence 357788888888877 22 235677777676553 56788888888887764 357889999999999999
Q ss_pred HHHHHHHHHHhc
Q psy10052 119 SETCYLALKRIQ 130 (500)
Q Consensus 119 r~~a~~aL~~~~ 130 (500)
|.+++.-|.++-
T Consensus 1023 Rrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 1023 RRQTIILLARLL 1034 (1529)
T ss_pred HHHHHHHHHHHH
Confidence 999999888864
No 181
>KOG2933|consensus
Probab=77.17 E-value=14 Score=34.46 Aligned_cols=123 Identities=16% Similarity=0.090 Sum_probs=76.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccC---CC-------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC------cc
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMK---DS-------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD------KS 402 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~---~~-------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~------~~ 402 (500)
++...+..|.+++|......+..+..+. .. ..+-.+++.+++. ...|-.+|+.+++.+-. .+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667778888888766665555432 21 2566666777766 68888888888887632 11
Q ss_pred HHHHH-HHhh---cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHH
Q psy10052 403 SISIL-EKYA---QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRY 478 (500)
Q Consensus 403 ~~~~L-~~~l---~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~ 478 (500)
....+ ..++ .+.+..||..|..+|..|-..-. ....++.|+..+.+.++ .+|.
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt---------------------p~~~L~~L~~~~~~~n~--r~r~ 223 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT---------------------PQKLLRKLIPILQHSNP--RVRA 223 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC---------------------hHHHHHHHHHHHhhhch--hhhh
Confidence 22222 2233 35678899999999998854321 13667777777754444 4666
Q ss_pred HHHHHhHh
Q psy10052 479 KAMFKLRD 486 (500)
Q Consensus 479 ~a~~al~~ 486 (500)
.++..+.+
T Consensus 224 ~a~~~~~~ 231 (334)
T KOG2933|consen 224 KAALCFSR 231 (334)
T ss_pred hhhccccc
Confidence 66554443
No 182
>KOG1967|consensus
Probab=76.42 E-value=6.4 Score=42.02 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=70.6
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHhccCC----------CccHHHHHHHhhcCCCC-HHHHHHHHHHHhhcCC-----
Q psy10052 337 KTAIQCISEAFADKSALLKHELAYCLGQMKD----------SDANDILRQVLEDKSQE-PMVRHEAAEALGAIGD----- 400 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~----------~~~~~~L~~~l~~~~~~-~~vR~~a~~aL~~~~~----- 400 (500)
+...|.|++.|.=+|..+|....+++..+-. ...+|.++.+=.+.+.+ -.||..|++.|+.+..
T Consensus 908 ~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 908 PMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 4567888999998999999888887765422 12466666555444322 6799999999887653
Q ss_pred ------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 401 ------KSSISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 401 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
++++..|.+.+.|+.+-||..|+.+=..+-
T Consensus 988 ~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 988 SLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred ccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 578899999999999999999988766553
No 183
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=76.22 E-value=6.3 Score=34.35 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=34.8
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcC------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 72 DILRQVLEDKSQEPMVRHEAAEALGAIG------DKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 72 ~~L~~~L~~~~~d~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
+.+.++..++ +..+|..|++.++-+- ....+|.|+.+..|+++.+|..|...+..+..
T Consensus 11 ~~Il~~~~~~--~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 11 KNILELCLSS--DDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 4444444444 4566666666665432 12466777777777777777777777766654
No 184
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=75.40 E-value=23 Score=29.67 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=56.6
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhc
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 112 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~ 112 (500)
.+..++.++..+.-.++.....+...|........... +++|...-.++.||..|++.|..+++.+ .+|.|+++++
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~a-L~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLk 115 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDA-LELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALK 115 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHH-HHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 34678888888877788888888888888755554444 4555543227999999999999988764 5677777775
Q ss_pred CC
Q psy10052 113 DP 114 (500)
Q Consensus 113 d~ 114 (500)
-+
T Consensus 116 ye 117 (152)
T cd00864 116 YE 117 (152)
T ss_pred cc
Confidence 43
No 185
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.62 E-value=21 Score=37.19 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=67.1
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHcc-----CCC-------cc----HHHHHHHhhccCCCHHHHHHHHHHHHhcCC--
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQM-----KDS-------DA----NDILRQVLEDKSQEPMVRHEAAEALGAIGD-- 100 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~-----~~~-------~~----~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-- 100 (500)
....+.++|.+++-..|...+++++.+ .++ .. +..|.+-|.|. .|.+|..|+..+.++-+
T Consensus 300 q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~--~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 300 QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT--YPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHhCc
Confidence 355677788888889999999988875 222 12 33444555666 79999999999988753
Q ss_pred -------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 101 -------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 101 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
.+.+......++|....||..|+.-++++
T Consensus 378 sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 378 SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 24567778889999999999999988875
No 186
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=74.13 E-value=12 Score=32.52 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc------CCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhc
Q psy10052 340 IQCISEAFADKSALLKHELAYCLGQM------KDSDANDILRQVLEDKSQEPMVRHEAAEALGAI 398 (500)
Q Consensus 340 ~~~L~~~l~~~~~~vr~~a~~aL~~l------~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~ 398 (500)
++.+++..-+++..+|..|++.+..+ .+...+|.|+.+..++ ++.+|..|...+..+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSP--NPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHH
Confidence 33444444455555555555544332 1223455555555444 455555555554443
No 187
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=74.05 E-value=3.4 Score=31.81 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=18.1
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q psy10052 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYA 111 (500)
Q Consensus 72 ~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l 111 (500)
..|..+|+++ ++.||.+|+..+-.+....+...|..+.
T Consensus 50 ~aLl~LL~hp--n~~VRl~AA~~~L~~~p~eA~~~Le~ia 87 (106)
T PF09450_consen 50 DALLPLLKHP--NMQVRLWAAAHTLRYAPEEARKVLEEIA 87 (106)
T ss_dssp GGGGGGGGSS---HHHHHHHHHTTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCC--ChhHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4555555555 4556655555444444334444444433
No 188
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=71.62 E-value=4.6 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=17.6
Q ss_pred ccHHHHHHHhhcCCCHhHHHHHHHH
Q psy10052 401 KSSISILEKYAQDPVKEVSETCYLA 425 (500)
Q Consensus 401 ~~~~~~L~~~l~d~~~~vr~~A~~a 425 (500)
+.....+...+.|+++.||.+|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3556667777778888888777654
No 189
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.50 E-value=78 Score=30.65 Aligned_cols=136 Identities=14% Similarity=0.069 Sum_probs=83.0
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHccC-CCccHHHHHHHhhccC----C-CHHHHHHHHHHHHhcC-C---------hh
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQMK-DSDANDILRQVLEDKS----Q-EPMVRHEAAEALGAIG-D---------KS 102 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~L~~~~----~-d~~vr~~a~~aL~~~~-~---------~~ 102 (500)
....+.+.+.+++...|..|+..|..-. -...+|.++.++.+.- . +..+-...++....+- + ..
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~ 258 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ 258 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH
Confidence 4556677777788888999988888653 3566788888776641 0 1222222233222221 1 14
Q ss_pred hHHHHHHHh----------cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCc
Q psy10052 103 SISILEKYA----------QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENE 172 (500)
Q Consensus 103 ~~~~L~~~l----------~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~ 172 (500)
.+|.++.++ .+++..+|..|+..|+.+..... ...+. + .......+.+.+.|+..
T Consensus 259 Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~------------~~y~~--l-~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 259 LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFS------------TSYNT--L-QPRITRTLLKALLDPKK 323 (343)
T ss_pred HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcC------------CCCCc--H-HHHHHHHHHHHHcCCCC
Confidence 567777665 24557899999999999875321 11111 0 02345567777776666
Q ss_pred CHHHHHHHHHHHHcCCC
Q psy10052 173 DLFMRYKAMFKLRDINS 189 (500)
Q Consensus 173 ~~~~r~~A~~~L~~~~~ 189 (500)
.....+.|+..|..+|.
T Consensus 324 ~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 324 PLTTHYGAIVGLSALGP 340 (343)
T ss_pred CcchhhHHHHHHHHhCc
Confidence 65567888888877764
No 190
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=70.30 E-value=59 Score=28.20 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=54.3
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhc
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 112 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~ 112 (500)
.+.+++.++....=.++.....+...|........... +++|...-.|+.||..|++.|..+.+.+ .+|.|+++|+
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~a-L~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr 120 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDA-LELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALK 120 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHH-HHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35567666666665666666678888888765554443 5555544237899999999999988764 5778888885
Q ss_pred CC
Q psy10052 113 DP 114 (500)
Q Consensus 113 d~ 114 (500)
-+
T Consensus 121 ~E 122 (184)
T smart00145 121 YE 122 (184)
T ss_pred cc
Confidence 44
No 191
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=70.23 E-value=20 Score=30.15 Aligned_cols=123 Identities=17% Similarity=0.093 Sum_probs=73.5
Q ss_pred hHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCC------cchHHH-HHHHccCCCHHHHHHHHHHHHcc------------
Q psy10052 6 KILLIGQVLKD-SSKPLKERFRALFTLKNIGG------KTAIQC-ISEAFADESALLKHELAYCLGQM------------ 65 (500)
Q Consensus 6 ~~~~L~~~L~~-~~~~~~~R~~A~~~L~~~~~------~~~~~~-L~~~l~~~~~~vR~~a~~~L~~~------------ 65 (500)
.++.++..|.. +.++ .+|..+.-.+.++-+ .+.+.. +...+.+++..-...++.++..+
T Consensus 4 ~l~~lL~~L~~~~~~~-~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPE-EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp CCCHHHHHHHCTTTSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHHHHhcccCCCH-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34556666665 3332 399999999877631 112222 23333322222333444444433
Q ss_pred CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC---------hhhHHHHHHHh-cCCCHH-HHHHHHHHHHHh
Q psy10052 66 KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD---------KSSISILEKYA-QDPVKE-VSETCYLALKRI 129 (500)
Q Consensus 66 ~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~---------~~~~~~L~~~l-~d~~~~-vr~~a~~aL~~~ 129 (500)
..+...+.+.........+..+...++++|..-.. ...++.|.+.+ ++++.. +|..|+-+|.++
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 34667788888888222278899999999976543 24578888888 466666 888888888763
No 192
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.03 E-value=81 Score=30.52 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=72.4
Q ss_pred hHHHHHhhccCCCHhHHHHHHHHHhcc-CCCCcHHHHHHHhhcc---CC--CHHH---HHHHHHHHhhcCC-------ch
Q psy10052 192 STLALTEGLSHGSSLYRHEIAFVLGQM-QNPSSIPALTSALEDQ---TQ--NEMV---RHECAEALGAIAT-------PE 255 (500)
Q Consensus 192 ~i~~l~~~L~~~~~~vr~~a~~aL~~~-~~~~~i~~L~~~l~~~---~~--~~~v---r~~a~~aL~~~~~-------~~ 255 (500)
.+..+.+.+.+.+...|..++..|..- +-...+|.++.++.+. +. +..+ ....+++|-.-.. ..
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~ 258 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ 258 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH
Confidence 444555555556666777777776433 3345677777666532 00 1111 1222333321111 12
Q ss_pred HHHHHHHhh----------cCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHH
Q psy10052 256 CYDVLRKYL----------SDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERF 325 (500)
Q Consensus 256 ~~~~L~~~l----------~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~ 325 (500)
.+|.+..++ .+..|.+|..++..|+.+....+... ..-.......+.+.+.++..+....+
T Consensus 259 Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y---------~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 259 LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY---------NTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC---------CcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 344444433 23468999999888886653322110 00001122366677778777777788
Q ss_pred HHHHHHHhcCC
Q psy10052 326 RALFTLKNIGG 336 (500)
Q Consensus 326 ~a~~~L~~~~~ 336 (500)
+|+..|..+|.
T Consensus 330 GAi~GL~~lG~ 340 (343)
T cd08050 330 GAIVGLSALGP 340 (343)
T ss_pred HHHHHHHHhCc
Confidence 88888887764
No 193
>KOG0413|consensus
Probab=69.96 E-value=7.3 Score=41.83 Aligned_cols=107 Identities=11% Similarity=0.172 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcC--C----cchHHHHHHHcc-CCCHHHHHHHHHHHHccC------CCccHHHHHHHhhccCCCHHHH
Q psy10052 22 KERFRALFTLKNIG--G----KTAIQCISEAFA-DESALLKHELAYCLGQMK------DSDANDILRQVLEDKSQEPMVR 88 (500)
Q Consensus 22 ~~R~~A~~~L~~~~--~----~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~------~~~~~~~L~~~L~~~~~d~~vr 88 (500)
.+|..+...|+++- + ...+|.|.+-|+ ..+..+|...+-+++.+- ....+|.+...|.|+ ++.||
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp--~~iVR 1023 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP--SVIVR 1023 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--hHHHH
Confidence 48999999999864 2 246778888886 777888988777776652 255789999999999 89999
Q ss_pred HHHHHHHHhcCChhhH-------HHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 89 HEAAEALGAIGDKSSI-------SILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 89 ~~a~~aL~~~~~~~~~-------~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+.++..|.++-..+.+ -.++-.+-|.++.+|..|--.++.+-
T Consensus 1024 rqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1024 RQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred HHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 9999999987544322 22333456888888887777776653
No 194
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=69.94 E-value=31 Score=29.33 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=53.7
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhc
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 112 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~ 112 (500)
.+.+++.++....=.++....++...|........ ..-+++|...-.|+.||..|++.|..+.+.+ .++.|+++++
T Consensus 44 ~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~-~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK 122 (166)
T cd00870 44 NKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDI-EDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALK 122 (166)
T ss_pred CcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCH-HHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45677777776665566666778888888765544 3345666654337899999999999988764 4566666664
Q ss_pred CC
Q psy10052 113 DP 114 (500)
Q Consensus 113 d~ 114 (500)
-+
T Consensus 123 yE 124 (166)
T cd00870 123 YE 124 (166)
T ss_pred hc
Confidence 43
No 195
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=69.91 E-value=30 Score=29.52 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccH---HHHHHHhhc
Q psy10052 336 GKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS---ISILEKYAQ 412 (500)
Q Consensus 336 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~---~~~L~~~l~ 412 (500)
.+.+++.++....-.++.-...+...|..+........ ++++...=.++.||..|+..|.++++.+. ++.|.+.++
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~a-LeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK 115 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQA-LELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLK 115 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHH-HHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46778888777777777766777778877765444444 44554332368899999999998887654 455555554
No 196
>KOG1525|consensus
Probab=69.17 E-value=12 Score=42.45 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=78.5
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHccCCCHHHHHHHHHHHHcc--CCCcc---
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGG----------KTAIQCISEAFADESALLKHELAYCLGQM--KDSDA--- 70 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~--~~~~~--- 70 (500)
-+++|.-.|.+.+.. +|..|...++.+-. +......+.-+.|.++.||..+++..... .++..
T Consensus 260 vip~l~~eL~se~~~--~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEE--VRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHhcchHH--HHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 467777778877765 99999999998642 23445555566799999999998886653 22222
Q ss_pred -HHHHHHHhhccCCCHHHHHHHHHHHHhcCC--------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 71 -NDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 71 -~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
...+.-...+. |+.+|....-..+...- +..+..+.+.+.|..+.||..|+..|.++-.
T Consensus 338 ~~~~~~l~~~~~--D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 STILLALRERDL--DEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHhhcC--ChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 12222222333 66666544333322211 1245556667799999999999999998754
No 197
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.08 E-value=22 Score=30.67 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCC------------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 72 DILRQVLEDKSQEPMVRHEAAEALGAIGD------------KSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 72 ~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
..|...|..+. ++.+....+.+|+.+-. ...+..+..++.+.|+.|+..+..+++-+-.
T Consensus 104 ~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 104 RGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 44556666665 66677777887776532 1345566777888999999999888887643
No 198
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=67.94 E-value=17 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=21.5
Q ss_pred ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc
Q psy10052 369 DANDILRQVLEDKSQEPMVRHEAAEALGAIGDK 401 (500)
Q Consensus 369 ~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~ 401 (500)
..++.++++.++.+ .+.+|-.+..+|+-+...
T Consensus 28 ~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 28 DIVEDIVKIAENSP-VLSIRGTCFYVLGLISST 59 (73)
T ss_pred CHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCC
Confidence 46667777766542 677788777777777543
No 199
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=67.15 E-value=91 Score=27.64 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=33.2
Q ss_pred HccCCCHHHHHHHHHHHHcc---CCCccHHHHHHHhhccCCCHHHHHH-HHHHHHhc--CChhhHHHHHHHhcCCCHHHH
Q psy10052 46 AFADESALLKHELAYCLGQM---KDSDANDILRQVLEDKSQEPMVRHE-AAEALGAI--GDKSSISILEKYAQDPVKEVS 119 (500)
Q Consensus 46 ~l~~~~~~vR~~a~~~L~~~---~~~~~~~~L~~~L~~~~~d~~vr~~-a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr 119 (500)
+++++.-..|..|+..|... .+...++.+...+.+-+ .+.+-=. +-..+|.+ ..+...+.+.+...+++..+|
T Consensus 54 Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~~-~Wd~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~~~W~r 132 (208)
T cd07064 54 LWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTKS-WWDTVDSLAKVVGGILLADYPEFEPVMDEWSTDENFWLR 132 (208)
T ss_pred HHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc-hHHHHHHHHHHHhHHHHhCChhHHHHHHHHHcCCcHHHH
Confidence 44455555555555555443 12223344444444432 2333211 12222221 122223445555555555555
Q ss_pred HHHHHH
Q psy10052 120 ETCYLA 125 (500)
Q Consensus 120 ~~a~~a 125 (500)
..|+.+
T Consensus 133 R~ai~~ 138 (208)
T cd07064 133 RTAILH 138 (208)
T ss_pred HHHHHH
Confidence 555543
No 200
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=67.15 E-value=16 Score=31.73 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=55.1
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhc
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 112 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~ 112 (500)
.+.+++.++....-.++.....+...|........... +++|...-.|+.||..|++.|..+.+.+ .+|.|+++|+
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A-L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr 121 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA-LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALR 121 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH-HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGG
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH-HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhe
Confidence 46788888887777777777788888988766554343 5666554237899999999999887653 5778888885
Q ss_pred CC
Q psy10052 113 DP 114 (500)
Q Consensus 113 d~ 114 (500)
-+
T Consensus 122 ~e 123 (184)
T PF00613_consen 122 YE 123 (184)
T ss_dssp GS
T ss_pred ec
Confidence 44
No 201
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=66.09 E-value=38 Score=28.79 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccH---HHHHHHhhc
Q psy10052 336 GKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS---ISILEKYAQ 412 (500)
Q Consensus 336 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~---~~~L~~~l~ 412 (500)
.+.+++.++....-.++.....+...|..+........ ++++...=.+..||..|+..|..+.+.+. ++.|.+.++
T Consensus 44 ~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~a-LeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK 122 (166)
T cd00870 44 NKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDA-LELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALK 122 (166)
T ss_pred CcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-HHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46677777776766666666677778887765544444 44554332378999999999999887754 455555553
No 202
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=66.09 E-value=1.1e+02 Score=29.56 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=34.7
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcC-------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 71 NDILRQVLEDKSQEPMVRHEAAEALGAIG-------DKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 71 ~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
+..|..++..+. ++.+....+.+++... .+..+..+.+.++|..+.+|..-...++.+-+
T Consensus 24 ~~~l~~~~~KE~-nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 24 VQGLSPLLSKES-NEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 444555555543 4555555555555422 23456666677777776677777766666543
No 203
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.68 E-value=77 Score=26.22 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHcc--CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhc------------CChhhHHHHHHHhcC-
Q psy10052 49 DESALLKHELAYCLGQM--KDSDANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQD- 113 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~--~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d- 113 (500)
.+||.+-...+..+..- +..+++..|.+-|.+. ++.|...|+..|..+ ...+.+..|.+++++
T Consensus 15 ~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~ 92 (144)
T cd03568 15 SENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHK--DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR 92 (144)
T ss_pred CcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc
Confidence 44555555555554432 2234555555556555 566666665555432 234566777777766
Q ss_pred CCHHHHHHHHHHHHHhc
Q psy10052 114 PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 114 ~~~~vr~~a~~aL~~~~ 130 (500)
.++.|+..+...+....
T Consensus 93 ~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 93 VHPTVKEKLREVVKQWA 109 (144)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67788887777776654
No 204
>KOG2549|consensus
Probab=65.18 E-value=74 Score=32.34 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=85.5
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHcc-CCCccHHHHHHHhhccC------CCHHHHHHHHHHHHhc-CCh---------
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQM-KDSDANDILRQVLEDKS------QEPMVRHEAAEALGAI-GDK--------- 101 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~L~~~~------~d~~vr~~a~~aL~~~-~~~--------- 101 (500)
....+.+.+.+.++..|..|+..|..- |-...+|.++.++.+.- .+-..-....+....+ .++
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 456677777788999999999998865 33556777777776641 0112222222222221 111
Q ss_pred hhHHHHHHHh----------cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCC
Q psy10052 102 SSISILEKYA----------QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNEN 171 (500)
Q Consensus 102 ~~~~~L~~~l----------~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~ 171 (500)
..+|.++.|+ .|.++.+|..|+..+..+.+.....-. . + ....+..+.+.+.|..
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~--------~------L-~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYN--------N------L-QPRITRTLSKALLDNK 352 (576)
T ss_pred HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHH--------H------H-HHHHHHHHHHHhcCCC
Confidence 3456666654 456688999999999888764322110 0 0 0234666777777766
Q ss_pred cCHHHHHHHHHHHHcCCChhhHHH
Q psy10052 172 EDLFMRYKAMFKLRDINSVESTLA 195 (500)
Q Consensus 172 ~~~~~r~~A~~~L~~~~~~~~i~~ 195 (500)
......+.++..|..++. +.+..
T Consensus 353 ~~~st~YGai~gL~~lg~-~~I~~ 375 (576)
T KOG2549|consen 353 KPLSTHYGAIAGLSELGH-EVIRT 375 (576)
T ss_pred CCchhhhhHHHHHHHhhh-hhhhh
Confidence 666678888888887776 34433
No 205
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=64.75 E-value=13 Score=29.38 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=40.6
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHHHHHHHhhcCCCH
Q psy10052 338 TAIQCISEAFA-DKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVK 416 (500)
Q Consensus 338 ~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~ 416 (500)
..+..|+++|. +.|+.+-.-||.=+|++. +.. |.-|.- + ..+ .+...+..+++++|+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~v---------r~~------p~gr~i-i---~~l---g~K~~vM~Lm~h~d~ 100 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFV---------RHY------PNGRNI-I---EKL---GAKERVMELMNHEDP 100 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHH---------HH-------GGGHHH-H---HHH---SHHHHHHHHTS-SSH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHH---------HHC------hhHHHH-H---Hhc---ChHHHHHHHhcCCCH
Confidence 45677778774 335555555666565442 111 111111 1 111 245677788888899
Q ss_pred hHHHHHHHHHHHhh
Q psy10052 417 EVSETCYLALKRIQ 430 (500)
Q Consensus 417 ~vr~~A~~aL~~l~ 430 (500)
+||..|..++..+-
T Consensus 101 eVr~eAL~avQklm 114 (119)
T PF11698_consen 101 EVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888764
No 206
>KOG1991|consensus
Probab=63.36 E-value=1.4e+02 Score=32.82 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=76.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHcc-CCC-HHHHHHHHHHHHcc-----CCC---------------ccHH
Q psy10052 16 DSSKPLKERFRALFTLKNIG-GKTAIQCISEAFA-DES-ALLKHELAYCLGQM-----KDS---------------DAND 72 (500)
Q Consensus 16 ~~~~~~~~R~~A~~~L~~~~-~~~~~~~L~~~l~-~~~-~~vR~~a~~~L~~~-----~~~---------------~~~~ 72 (500)
++++. .|..|-..|.+.. .+.-+..|++... +.. -.||..|+-.+.+. .+. ...+
T Consensus 15 d~d~~--~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ire 92 (1010)
T KOG1991|consen 15 DSDAK--ERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRE 92 (1010)
T ss_pred CCChH--HHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHH
Confidence 45554 9999999999764 3456777777764 444 46688887777653 111 1245
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC-------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIG-------DKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
.+++.+-.. +..+|..--.+|..|- +++.++....+|++++...-..+.-.|.++..
T Consensus 93 nIl~~iv~~--p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 93 NILETIVQV--PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred HHHHHHHhC--chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 566666665 4667777766775442 35677888888999998888888888887754
No 207
>KOG0946|consensus
Probab=62.40 E-value=2.3e+02 Score=30.53 Aligned_cols=102 Identities=12% Similarity=0.133 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHhhc--CCCHhHHHHHHHHHHHhhhhhhcccc--cccCCCCCCCCCCCCCCchhhH
Q psy10052 385 PMVRHEAAEALGAIGDKSSISILEKYAQ--DPVKEVSETCYLALKRIQFVTEEDKQ--KDTGNIYGSVDPTPPLDDVSDI 460 (500)
Q Consensus 385 ~~vR~~a~~aL~~~~~~~~~~~L~~~l~--d~~~~vr~~A~~aL~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 460 (500)
+.+...+-.++.. ...+..|...+- +-..+|+..+..+++.+-..+..... .....+++ ++ + ..++
T Consensus 301 ~~~~~q~qk~l~s---s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~--~~----P-r~si 370 (970)
T KOG0946|consen 301 SSITHQNQKALVS---SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSI--PN----P-RPSI 370 (970)
T ss_pred HHHHHHHHHHHHH---cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCC--CC----C-ccch
Confidence 4444444344433 234566666553 34677888888888877554422111 11111111 10 1 1334
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhHhc------CChhhHHHh
Q psy10052 461 NKLKEILLNENEDLFMRYKAMFKLRDI------NSVESTLAL 496 (500)
Q Consensus 461 ~~l~~~l~~~~~~~~~r~~a~~al~~~------g~~~~~~~l 496 (500)
-.|...+-.+...+..|.+..+.+..+ |.++.+..|
T Consensus 371 vvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tl 412 (970)
T KOG0946|consen 371 VVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTL 412 (970)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444445666778999998888765 555555444
No 208
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=62.04 E-value=52 Score=35.51 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=83.8
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc---h----HHHHHHHcc---CCCHHHHHHHHHHHHccCCCccHH
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT---A----IQCISEAFA---DESALLKHELAYCLGQMKDSDAND 72 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~---~----~~~L~~~l~---~~~~~vR~~a~~~L~~~~~~~~~~ 72 (500)
....+.+|+++|+++-.. .+...+..|.++-.+. + ...|.+..+ .....-+..|.+.||.|....-++
T Consensus 23 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~pgvd~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~~~ 100 (844)
T TIGR00117 23 NANQMAALVELLKNPPAG--EEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGYNVH 100 (844)
T ss_pred CHHHHHHHHHHhcCCCCc--cHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCCCHH
Confidence 456788999999987554 6667788888765331 1 122333333 223355788999999997777789
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhh
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIG-DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ 138 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~ 138 (500)
.|+++|..+ |..+-..|+++|...- --++...+..+.+. +. .....+++.++-.|....+..
T Consensus 101 ~l~~~~~~~--~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~-n~-~a~~v~~swa~aewf~~~~~~ 163 (844)
T TIGR00117 101 PLIDALDSQ--DANIAPIAAKALSHTLLVFDNFYDVEEKSKT-NE-YAKQVMQSWADAEWFLNKPAL 163 (844)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHhceEEEeechHHHHHHhhc-CH-HHHHHHHHHhhhhhhhcCCCc
Confidence 999999877 7889999999998642 12333344444333 33 344556666666665555443
No 209
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=61.58 E-value=97 Score=26.01 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC---------chHHHHHHHhhc-CCcHH-HHHHHHHHhh
Q psy10052 219 QNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT---------PECYDVLRKYLS-DEKVV-VRQSCEIALD 280 (500)
Q Consensus 219 ~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~-~~~~~-vr~~a~~al~ 280 (500)
..++..+.+..+......+..+...+++.|..... ..+++.|.+.++ +++.. +|..|..+|.
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 35566777777776223567778888888764432 235788888884 44555 6776666554
No 210
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.54 E-value=76 Score=26.26 Aligned_cols=83 Identities=18% Similarity=0.112 Sum_probs=57.6
Q ss_pred cCCCHHHHHHHHHHHhccC--CCccHHHHHHHhhcCCCCHHHHHHHHHHHhhc------------CCccHHHHHHHhhcC
Q psy10052 348 ADKSALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQD 413 (500)
Q Consensus 348 ~~~~~~vr~~a~~aL~~l~--~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~------------~~~~~~~~L~~~l~d 413 (500)
..+|+.+-...|..+..-. ...++..|.+-+.+. ++.+...|+..|..+ .+.+.+..|.+++.+
T Consensus 14 ~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 14 TSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHK--DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred CCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 3456666666666665432 224677777777766 678887777776543 345677888888877
Q ss_pred -CCHhHHHHHHHHHHHhhhh
Q psy10052 414 -PVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 414 -~~~~vr~~A~~aL~~l~~~ 432 (500)
.++.|+.....-+..+...
T Consensus 92 ~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 92 RVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 7889999998888888653
No 211
>KOG2274|consensus
Probab=60.48 E-value=1e+02 Score=33.45 Aligned_cols=120 Identities=17% Similarity=0.079 Sum_probs=74.8
Q ss_pred cCCCHHHHHHHHHHHhccCCCc-cHHHHHHHhhcCCCCHHHHHHHHHHHhhcC------------C-----cc----HHH
Q psy10052 348 ADKSALLKHELAYCLGQMKDSD-ANDILRQVLEDKSQEPMVRHEAAEALGAIG------------D-----KS----SIS 405 (500)
Q Consensus 348 ~~~~~~vr~~a~~aL~~l~~~~-~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~------------~-----~~----~~~ 405 (500)
.+.++.+|..|-..+..+.... ....|.+.+.+...+-..|..|+-.|.+.- . .+ ...
T Consensus 14 ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe 93 (1005)
T KOG2274|consen 14 LSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIRE 93 (1005)
T ss_pred cCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHH
Confidence 3667777777777777775543 456666666655335566666665554431 0 11 234
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhH
Q psy10052 406 ILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLR 485 (500)
Q Consensus 406 ~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~ 485 (500)
.|...+.+++..+|.++..++..+....-++.+ ++.++.+.+++.+.+. ..=..|+..|.
T Consensus 94 ~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~W------------------pElv~~i~~~l~~~n~--n~i~~am~vL~ 153 (1005)
T KOG2274|consen 94 QLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEW------------------PELVPFILKLLSSGNE--NSIHGAMRVLA 153 (1005)
T ss_pred HHHhhhhccccccchHHHHHHHHHHhccCchhh------------------HHHHHHHHHHHhccch--hhhhhHHHHHH
Confidence 555566688888999999998888764433332 5788888888864333 24455666666
Q ss_pred hc
Q psy10052 486 DI 487 (500)
Q Consensus 486 ~~ 487 (500)
.+
T Consensus 154 el 155 (1005)
T KOG2274|consen 154 EL 155 (1005)
T ss_pred HH
Confidence 55
No 212
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.26 E-value=2.1e+02 Score=29.37 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=55.0
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC------CcchHHHHHHHccCCCHHHHHHHHHHHHccC----CCccHHHH
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIG------GKTAIQCISEAFADESALLKHELAYCLGQMK----DSDANDIL 74 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~------~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~----~~~~~~~L 74 (500)
.-++.|-+.|-..... ...-|+.-++--+ .+.++..|.+.+.+++...+..|+-.|+..- .++....|
T Consensus 413 ~gl~~Ldkyly~de~~--~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL 490 (881)
T COG5110 413 KGLETLDKYLYADESY--RKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELL 490 (881)
T ss_pred hhHHHHHHHHhcCccc--ccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHh
Confidence 3455666666544442 3333333333221 2457777888888999899999988888662 24455666
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhc
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAI 98 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~ 98 (500)
.++..+.+-.-++...|.-+||.+
T Consensus 491 ~Pi~~std~pie~~~~asltLg~v 514 (881)
T COG5110 491 QPIMFSTDSPIEVVFFASLTLGSV 514 (881)
T ss_pred hhhhcCCCCcHHHHHHHHHhhhhe
Confidence 666666621125666666677764
No 213
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.85 E-value=58 Score=28.15 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhcCC------------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q psy10052 372 DILRQVLEDKSQEPMVRHEAAEALGAIGD------------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 372 ~~L~~~l~~~~~~~~vR~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
..|...+..++ +..+-...++.|..+-. ++.+..+..++.+.|+.|+..+..+++.+-..
T Consensus 104 ~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 104 RGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 44555555443 45555566666655421 35667777788889999999999999988653
No 214
>KOG2759|consensus
Probab=59.72 E-value=10 Score=36.88 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=46.2
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+.+..|+.+|+.++ ||.+-.-|+.=+|..-. -+.-..+..+++++||.||..|+.|+.++-
T Consensus 366 ellkiL~~lLe~s~-Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSN-DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCC-CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 35678888888875 78777777777776421 133466888999999999999999998764
No 215
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=59.60 E-value=99 Score=25.47 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 104 ISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 104 ~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
...+..+|.++++.|+..|..++-...
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 344555666666666666666665544
No 216
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=59.33 E-value=1.1e+02 Score=26.25 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=42.9
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhcc-CCCHHHHHHHHHHHHhcCChh---hHHHHHHHhc
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDK-SQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 112 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~-~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~ 112 (500)
+.+++.+ ++..+..-....+..|-..........| ++|... ..++.||..|++.|....+.. .++.|+++|+
T Consensus 40 p~AL~~~---l~~~~~~~~~~~l~~Ll~W~pi~p~~AL-ell~~~y~~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLr 115 (175)
T cd00871 40 PEALPFL---VTGKSVDENSPDLKYLLYWAPVSPVQAL-SLFTPQYPGHPLVLQYAVRVLESYPVETVFFYIPQIVQALR 115 (175)
T ss_pred HHHHHHH---hCccChhhHHHHHHHHcCCCCCCHHHHH-HHhCcccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 3444444 4443433334455555555443333333 333322 226899999999999988764 5778888885
Q ss_pred CC
Q psy10052 113 DP 114 (500)
Q Consensus 113 d~ 114 (500)
.+
T Consensus 116 yd 117 (175)
T cd00871 116 YD 117 (175)
T ss_pred cc
Confidence 43
No 217
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=59.08 E-value=9.1 Score=29.50 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhc
Q psy10052 340 IQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLED 380 (500)
Q Consensus 340 ~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~ 380 (500)
...|+.+|++++..||..|+..+-.+.+..+...|..+.+.
T Consensus 49 r~aLl~LL~hpn~~VRl~AA~~~L~~~p~eA~~~Le~ia~~ 89 (106)
T PF09450_consen 49 RDALLPLLKHPNMQVRLWAAAHTLRYAPEEARKVLEEIASS 89 (106)
T ss_dssp GGGGGGGGGSS-HHHHHHHHHTTTTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhCHHHHHHHHHHHHHc
Confidence 44555566666666665555544444444444444444443
No 218
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=58.82 E-value=66 Score=27.42 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccH---HHHHHHhhc
Q psy10052 336 GKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS---ISILEKYAQ 412 (500)
Q Consensus 336 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~---~~~L~~~l~ 412 (500)
.+.+++.++....+-+..-...+...|..+........| +++...=.+..||..|++.|..+.+.+. ++.|.+.++
T Consensus 37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~AL-eLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLIAL-ELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALK 115 (169)
T ss_pred CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHHHH-HHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 467777776654322333344566667676655544443 3333221267899999999999887654 566666664
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=58.62 E-value=40 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=20.2
Q ss_pred HHHHHHHHccCC----------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC
Q psy10052 56 HELAYCLGQMKD----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG 99 (500)
Q Consensus 56 ~~a~~~L~~~~~----------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~ 99 (500)
+.++|++|.++. .+.++.++++.+..+ -..+|--+..+||-+.
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHh
Confidence 355666666543 223444444444332 3445555555555444
No 220
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=58.20 E-value=93 Score=25.24 Aligned_cols=82 Identities=20% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHhcc--CCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhc------------CCccHHHHHHHhhcC-
Q psy10052 349 DKSALLKHELAYCLGQM--KDSDANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQD- 413 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l--~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~------------~~~~~~~~L~~~l~d- 413 (500)
++|+..-...+..+..- +...++..|.+-+.++ ++.++..|+..|..+ +..+.+..|.+++..
T Consensus 15 ~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS 92 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence 45666666666666544 2234677777777766 688888777777543 123555567777754
Q ss_pred --CCHhHHHHHHHHHHHhhhh
Q psy10052 414 --PVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 414 --~~~~vr~~A~~aL~~l~~~ 432 (500)
.++.|+..+..-+..+...
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 93 PKYDPKVREKALELILAWSES 113 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 5788999999888888754
No 221
>KOG2274|consensus
Probab=56.80 E-value=59 Score=35.11 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHhcCCh-hhHHHHHHHhcCC--CHHHHHHHHHHHHHhc
Q psy10052 84 EPMVRHEAAEALGAIGDK-SSISILEKYAQDP--VKEVSETCYLALKRIQ 130 (500)
Q Consensus 84 d~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 130 (500)
|+.+|..|-..|..+... +....|.....+. .-..|+.|.-.|.++-
T Consensus 17 d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yi 66 (1005)
T KOG2274|consen 17 DQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYI 66 (1005)
T ss_pred ChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHH
Confidence 677888888777776544 3344555555443 3345666666666554
No 222
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=56.63 E-value=86 Score=25.44 Aligned_cols=92 Identities=15% Similarity=0.044 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHhhc--CCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhH
Q psy10052 383 QEPMVRHEAAEALGAI--GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDI 460 (500)
Q Consensus 383 ~~~~vR~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (500)
++|..=...+..+... +..+++..|.+.+..+++.++..|...|..+-...+...... ....+.+
T Consensus 16 ~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~-------------i~s~~fl 82 (133)
T cd03561 16 PDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQ-------------VADKEFL 82 (133)
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHH-------------HhhHHHH
Confidence 3677777777777655 456788999999999999999999999998876554322100 0123677
Q ss_pred HHHHHHHhcC-CccHHHHHHHHHHhHhc
Q psy10052 461 NKLKEILLNE-NEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 461 ~~l~~~l~~~-~~~~~~r~~a~~al~~~ 487 (500)
..|++++... ..+..||.++..-+..-
T Consensus 83 ~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 83 LELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 7788888654 45667888887766554
No 223
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.58 E-value=70 Score=26.21 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=18.1
Q ss_pred ChhhHHHHHHHhcCCC--HH--HHHHHHHHHHHhc
Q psy10052 100 DKSSISILEKYAQDPV--KE--VSETCYLALKRIQ 130 (500)
Q Consensus 100 ~~~~~~~L~~~l~d~~--~~--vr~~a~~aL~~~~ 130 (500)
....+..|.+++.+.. +. |+..+...+...+
T Consensus 83 ~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 83 SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4456666666664322 22 7777777776654
No 224
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=55.48 E-value=86 Score=26.20 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=50.5
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCcc---HHHHHHHhhc
Q psy10052 337 KTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 412 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~---~~~~L~~~l~ 412 (500)
+.+++.++..+...++.-...+...|..+........| .++...-.++.||..|++.|.+.++.+ .++.|.+.++
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL-~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLk 115 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDAL-ELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALK 115 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHH-HHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 46777777777777777777777777776555544443 344322236889999999998887765 3566666663
No 225
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.91 E-value=44 Score=24.67 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=27.6
Q ss_pred HHHHHHhhcCC--CHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHH
Q psy10052 404 ISILEKYAQDP--VKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMR 477 (500)
Q Consensus 404 ~~~L~~~l~d~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r 477 (500)
+..|....+|. ...||.+|..+...+.....+ |.++...++..|.++-.|.+-+.+.|
T Consensus 19 ~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~----------------p~vRaAtaIsiLeeisnDPNmP~h~R 78 (93)
T COG1698 19 MQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGES----------------PAVRAATAISILEEISNDPNMPLHAR 78 (93)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHHHHhCCCCC----------------chhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34444444442 345666666666555432211 12233455555655555555554444
No 226
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=54.85 E-value=2.2e+02 Score=27.92 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhhccC-CCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc
Q psy10052 176 MRYKAMFKLRDINSVESTLALTEGLSH-GSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATP 254 (500)
Q Consensus 176 ~r~~A~~~L~~~~~~~~i~~l~~~L~~-~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~ 254 (500)
.|..++..|...+++++........++ .+-.-|..++.++.....+..-..|..+...-..++-|--.-...-+....+
T Consensus 220 Lkn~~L~yL~~~~~~~~~~la~~qy~~A~nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~ 299 (367)
T PF11940_consen 220 LKNLCLSYLAAADDPEAAELAQEQYKSADNMTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSP 299 (367)
T ss_dssp HHHHHHHHHHHCTCTHHHHHHHHHHHHSSSHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--ST
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCc
Confidence 345566667777777777777776655 5778888999999888777766666666554334565533322222333446
Q ss_pred hHHHHHHHhhcCC
Q psy10052 255 ECYDVLRKYLSDE 267 (500)
Q Consensus 255 ~~~~~L~~~l~~~ 267 (500)
+.+..+.+++++|
T Consensus 300 ~~l~~V~~L~~Hp 312 (367)
T PF11940_consen 300 DTLERVKKLMQHP 312 (367)
T ss_dssp THHHHHHHHTTST
T ss_pred cHHHHHHHHhcCC
Confidence 7899999999888
No 227
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.51 E-value=87 Score=23.22 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=33.6
Q ss_pred HHHHHHhhcCC--cHHHHHHHHHHhhhcccc-chhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10052 257 YDVLRKYLSDE--KVVVRQSCEIALDMCDYE-NSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTL 331 (500)
Q Consensus 257 ~~~L~~~l~~~--~~~vr~~a~~al~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L 331 (500)
+..|.+..+|. ...+|++|-.+...+..+ .++.+..+. .+..|.++-.|++-+...|..-...+
T Consensus 19 ~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAt-----------aIsiLeeisnDPNmP~h~RT~iw~vi 85 (93)
T COG1698 19 MQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAAT-----------AISILEEISNDPNMPLHARTLIWNVI 85 (93)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHH-----------HHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34444444444 346666666666555432 222222222 23366677778887777775544433
No 228
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=53.64 E-value=31 Score=29.91 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=50.7
Q ss_pred CChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCcc---HHHHHHHhh
Q psy10052 335 GGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYA 411 (500)
Q Consensus 335 ~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~---~~~~L~~~l 411 (500)
..+.+++.++..+...++.....+...|..+........ +.++...=.++.||..|+..|..+.+.+ .++.|.+.+
T Consensus 42 ~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A-L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaL 120 (184)
T PF00613_consen 42 NNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA-LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQAL 120 (184)
T ss_dssp TSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH-HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHG
T ss_pred hCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH-HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 346778877777777777766778888888776554444 3444432225889999999998877654 456677776
Q ss_pred c
Q psy10052 412 Q 412 (500)
Q Consensus 412 ~ 412 (500)
+
T Consensus 121 r 121 (184)
T PF00613_consen 121 R 121 (184)
T ss_dssp G
T ss_pred e
Confidence 4
No 229
>KOG2549|consensus
Probab=53.56 E-value=1.1e+02 Score=31.19 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHhccCC----------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc
Q psy10052 349 DKSALLKHELAYCLGQMKD----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK 401 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~ 401 (500)
|+.|.+|.-+++.+..+.. +..+..|.+.+.|...++...+.++..|..+|.+
T Consensus 309 dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 309 DNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhh
Confidence 5567788888777766542 2356667777777666888999999999888874
No 230
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=53.50 E-value=85 Score=27.23 Aligned_cols=75 Identities=20% Similarity=0.130 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCcc---HHHHHHHhhc
Q psy10052 337 KTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQ 412 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~---~~~~L~~~l~ 412 (500)
+.+++.++....-.++.....+...+..+........ +.++...-.++.||..|++.|...++.+ .++.|.+.++
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~a-L~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr 120 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDA-LELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALK 120 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHH-HHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4556555555555555545556666666654443333 2333322125777777777777776654 3455555553
No 231
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=52.99 E-value=2.1e+02 Score=27.20 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=11.3
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc
Q psy10052 71 NDILRQVLEDKSQEPMVRHEAAEALGAI 98 (500)
Q Consensus 71 ~~~L~~~L~~~~~d~~vr~~a~~aL~~~ 98 (500)
...+.++++.+ |+.+...++..|+.+
T Consensus 107 ~~~fl~ll~~~--D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 107 YSPFLKLLDRN--DSFIQLKAAFILTSL 132 (312)
T ss_dssp HHHHHHH-S-S--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 34444444444 455555555555443
No 232
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.72 E-value=1e+02 Score=29.29 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcC
Q psy10052 51 SALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQD 113 (500)
Q Consensus 51 ~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d 113 (500)
++.+|..+.......|+......+......+. ++..|..++.+|+...++..+..++..+-+
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~-~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNST-SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS-THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhccC-CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 56778777777777777776788888777664 678888888888888888777766666544
No 233
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=51.54 E-value=1.2e+02 Score=25.95 Aligned_cols=70 Identities=13% Similarity=-0.022 Sum_probs=42.3
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHcc---CCCHHHHHHHHHHHHccCCCcc---HHHHHHHhhcc
Q psy10052 9 LIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFA---DESALLKHELAYCLGQMKDSDA---NDILRQVLEDK 81 (500)
Q Consensus 9 ~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~---~~~~~vR~~a~~~L~~~~~~~~---~~~L~~~L~~~ 81 (500)
.|..+|+..+.+ ....+...|-.. .+-....-+++|. .+++.||..|++.|....+.+. ++.|+++|+-+
T Consensus 42 AL~~~l~~~~~~--~~~~~l~~Ll~W-~pi~p~~ALell~~~y~~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd 117 (175)
T cd00871 42 ALPFLVTGKSVD--ENSPDLKYLLYW-APVSPVQALSLFTPQYPGHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYD 117 (175)
T ss_pred HHHHHhCccChh--hHHHHHHHHcCC-CCCCHHHHHHHhCcccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 344445444433 344445555533 3323333444553 3478999999999999987654 67777888776
No 234
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=50.38 E-value=3.5e+02 Score=28.99 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=34.2
Q ss_pred CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHhc-CC-CHHHHHHHHHHHHHhc
Q psy10052 68 SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-SSISILEKYAQ-DP-VKEVSETCYLALKRIQ 130 (500)
Q Consensus 68 ~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-d~-~~~vr~~a~~aL~~~~ 130 (500)
..++..+.+++...+.++.........+...++. .++..+.+.+. +| ++.+......++...+
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 4556666666665544566666556666665553 45556666553 33 3444444444444444
No 235
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=50.24 E-value=85 Score=29.13 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=50.8
Q ss_pred hhhHHHHHhhcc-CC-CHhHHHHHHHHHhccCCCC-cHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-hHHHHHHHhhc
Q psy10052 190 VESTLALTEGLS-HG-SSLYRHEIAFVLGQMQNPS-SIPALTSALEDQTQNEMVRHECAEALGAIATP-ECYDVLRKYLS 265 (500)
Q Consensus 190 ~~~i~~l~~~L~-~~-~~~vr~~a~~aL~~~~~~~-~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~ 265 (500)
.+++..+.+.+. +| ++.++...+..+...+... +...|.........++.+...-+.+....+.. .++..+.+.+.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 357777777665 34 5778877777776666433 22233333332113445555555555555553 47777777765
Q ss_pred -CC-cHHHHHHHHHHhhhccc
Q psy10052 266 -DE-KVVVRQSCEIALDMCDY 284 (500)
Q Consensus 266 -~~-~~~vr~~a~~al~~l~~ 284 (500)
++ |+.+...-+.++...+.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HSTT-HHHHHHHHHHHT----
T ss_pred ccccccccccccccccccccc
Confidence 33 77777777777765543
No 236
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=50.18 E-value=53 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=18.7
Q ss_pred hhhHHHHHHHhcCCC--HHHHHHHHHHHHHhc
Q psy10052 101 KSSISILEKYAQDPV--KEVSETCYLALKRIQ 130 (500)
Q Consensus 101 ~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~ 130 (500)
...+..|.+++.++. +.|+..+...+....
T Consensus 79 ~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 79 KEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 345666666665433 347877777776654
No 237
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.00 E-value=2.3e+02 Score=26.80 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHHHHHHHhh
Q psy10052 351 SALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYA 411 (500)
Q Consensus 351 ~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~~~L~~~l 411 (500)
++++|..+.......++......|.+.+.... ++..|..++.+|+...+++.+..+..++
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~-~~~~k~~~l~aLa~~~d~~~~~~~l~~~ 227 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNST-SPEEKRRLLSALACSPDPELLKRLLDLL 227 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS-THHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhccC-CHHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 67899998888888888778889998887654 7999999999999999998877766655
No 238
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.60 E-value=2e+02 Score=26.01 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=26.1
Q ss_pred hhhHHHHHHHh-cCCCHHHHHHHHHHHhccCCCc
Q psy10052 337 KTAIQCISEAF-ADKSALLKHELAYCLGQMKDSD 369 (500)
Q Consensus 337 ~~~~~~L~~~l-~~~~~~vr~~a~~aL~~l~~~~ 369 (500)
.+.++.+...| ++.++.++..+++++..+...+
T Consensus 120 ~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 120 VDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 45667778888 7778888999999998887654
No 239
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=49.35 E-value=83 Score=26.70 Aligned_cols=87 Identities=24% Similarity=0.181 Sum_probs=45.4
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHccCC-----------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC--------
Q psy10052 40 IQCISEAFADESALLKHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-------- 100 (500)
Q Consensus 40 ~~~L~~~l~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-------- 100 (500)
+..+..+|.++++.-|..++..++..-. ..-+..|...|+.++ .+.+...++.+|..+-.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCch
Confidence 3344555666666666665555554311 112355566666653 45667777777665421
Q ss_pred ---------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 101 ---------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 101 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
+..++.+++++++ ..+...+..+|..+
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 1234455555554 34445555555554
No 240
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=48.99 E-value=1.2e+02 Score=29.67 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=66.3
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCC---cchHHH----HHHHcc------CCCHHHHHHHHHHHHccCCC------
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGG---KTAIQC----ISEAFA------DESALLKHELAYCLGQMKDS------ 68 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~---~~~~~~----L~~~l~------~~~~~vR~~a~~~L~~~~~~------ 68 (500)
+-+-..+...|.. ..|..|...+..... ....+. +...|. ..+|.-+-.|++.++.+...
T Consensus 213 EYIrrd~e~sd~~-TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 213 EYIRRDLEGSDSD-TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHSCSS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHhhccccccC-CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 3334444433332 367777777766542 112222 222332 34677777788887765211
Q ss_pred ---------ccHH----HHHHHhh-ccCCCHHHHHHHHHHHHhcCCh-------hhHHHHHHHhcCCCHHHHHHHHHHH
Q psy10052 69 ---------DAND----ILRQVLE-DKSQEPMVRHEAAEALGAIGDK-------SSISILEKYAQDPVKEVSETCYLAL 126 (500)
Q Consensus 69 ---------~~~~----~L~~~L~-~~~~d~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~d~~~~vr~~a~~aL 126 (500)
...+ .+..-|. +.+..|.+|..|++.+..+.+. ..+|.++.+|.+++..|+..|+.++
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 0111 1112233 2233799999999999887542 5688899999999999999888764
No 241
>KOG1525|consensus
Probab=48.10 E-value=1.4e+02 Score=34.37 Aligned_cols=126 Identities=19% Similarity=0.099 Sum_probs=73.6
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhh
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ 138 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~ 138 (500)
.++|.|..-|..+ +..+|..|+..+|.+-. +.....++..+.|-+..||..+++....+--...-.
T Consensus 259 ~vip~l~~eL~se--~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~-- 334 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE--QEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI-- 334 (1266)
T ss_pred HHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh--
Confidence 3567776666666 68899999999998632 234455666679999999999998887643111000
Q ss_pred ccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHH--HH--------HHHHcCCChhhHHHHHhhccCCCHhHH
Q psy10052 139 KDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYK--AM--------FKLRDINSVESTLALTEGLSHGSSLYR 208 (500)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~--A~--------~~L~~~~~~~~i~~l~~~L~~~~~~vr 208 (500)
.... .+...+.+.+.|+.+|.. .+ ..|..+ +..+..+...+.|.-+.||
T Consensus 335 ------------------~~~~-~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~--~~ll~~~~eR~rDKk~~VR 393 (1266)
T KOG1525|consen 335 ------------------AKAS-TILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYI--PLLLKLVAERLRDKKIKVR 393 (1266)
T ss_pred ------------------hhHH-HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhh--HHHHHHHHHHHhhhhHHHH
Confidence 0011 111222222333334432 11 111111 1256666677788889999
Q ss_pred HHHHHHHhccC
Q psy10052 209 HEIAFVLGQMQ 219 (500)
Q Consensus 209 ~~a~~aL~~~~ 219 (500)
..|+.-|.++.
T Consensus 394 ~~Am~~LaqlY 404 (1266)
T KOG1525|consen 394 KQAMNGLAQLY 404 (1266)
T ss_pred HHHHHHHHHHH
Confidence 99988876543
No 242
>KOG0905|consensus
Probab=46.85 E-value=4.9e+02 Score=29.72 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=60.2
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh---hhHHHHHHHhc
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---SSISILEKYAQ 112 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~---~~~~~L~~~l~ 112 (500)
.+.+++.++....+=++..-...-..|.++....-..+|--++..-. |.+||..|++.++++.+. +.+|.|++.|+
T Consensus 856 ~p~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfP-DqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK 934 (1639)
T KOG0905|consen 856 EPNALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFP-DQEVRAHAVQWIARLSNDELLDYLPQLVQALK 934 (1639)
T ss_pred CCchhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCC-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44566666665555455444444455666654443344433333323 788999999999998875 45677777774
Q ss_pred ----CCCHHHHHHHHHHHHHhch
Q psy10052 113 ----DPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 113 ----d~~~~vr~~a~~aL~~~~~ 131 (500)
-..+-||...-.+|..+.-
T Consensus 935 ~E~yl~S~Lv~FLL~rsl~sl~~ 957 (1639)
T KOG0905|consen 935 FELYLKSALVQFLLSRSLVSLQF 957 (1639)
T ss_pred HHHhccCHHHHHHHHHHhcchHH
Confidence 3467888888888877653
No 243
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=46.18 E-value=3.2e+02 Score=27.29 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=64.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcC----CcchHHHHHH----Hc-cCCCHHHHHHHHHHHHc-------cCCCcc
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIG----GKTAIQCISE----AF-ADESALLKHELAYCLGQ-------MKDSDA 70 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~----~~~~~~~L~~----~l-~~~~~~vR~~a~~~L~~-------~~~~~~ 70 (500)
+..+.....+.+.+ ..|..+.+.+.-+- ..+.+..+++ .+ ...++..|..++..+.- .+++.+
T Consensus 191 l~~l~~~~~~~~~~-~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 191 LQSLLNLALSSEDE-FSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHHHcCCCh-HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44555555444433 47877777666543 2222333332 22 22333444444333322 244444
Q ss_pred ---HHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----------------------hhHHHHHHHhcCCCHHHHHHHHH
Q psy10052 71 ---NDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------------------SSISILEKYAQDPVKEVSETCYL 124 (500)
Q Consensus 71 ---~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------------------~~~~~L~~~l~d~~~~vr~~a~~ 124 (500)
...|+.+|.+ +.+...++++++-+-.+ ..+|.|++..+..+...+.....
T Consensus 270 ~~~~~~L~~lL~~----~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS----PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC----hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 4555555554 45788888888765321 23566777777666667777777
Q ss_pred HHHHhc
Q psy10052 125 ALKRIQ 130 (500)
Q Consensus 125 aL~~~~ 130 (500)
||..+-
T Consensus 346 ALs~ll 351 (415)
T PF12460_consen 346 ALSHLL 351 (415)
T ss_pred HHHHHH
Confidence 877664
No 244
>KOG0392|consensus
Probab=46.11 E-value=56 Score=36.75 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=65.6
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCCC-------ccHHHHHHHhhccCCCHHHHHHHHHHHHh-c---C---C---
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKDS-------DANDILRQVLEDKSQEPMVRHEAAEALGA-I---G---D--- 100 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~-------~~~~~L~~~L~~~~~d~~vr~~a~~aL~~-~---~---~--- 100 (500)
...+.+..++.+.++.+|..++++++.+... .++..++.++.+. +..+|+.++..+-. + . .
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~~~~r~~a~e~~~~l~~~l~~~l~~~ 893 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DKFVRRQGADELIELLDAVLMVGLVPY 893 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hhHhhhhhHHHHHHHHHHhhccccccc
Confidence 3456667777899999999999999988542 2456666677776 56676666554322 1 1 1
Q ss_pred -hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 101 -KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 101 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+=.+++|...+.|....||.++-.+++++-
T Consensus 894 ~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 894 NPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred ceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 124677888889999999999999999875
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.77 E-value=1.7e+02 Score=24.09 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=35.0
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHhc------------CChhhHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQ-DPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~ 130 (500)
+++..|.+-|.+. ++.+...|+..|..+ .+.+.+..|.+++. ..++.|+..+...+....
T Consensus 41 ~a~ral~krl~~~--n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSK--NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 3445555555554 455555555444332 23456666777665 566788888888777654
No 246
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=45.75 E-value=1.3e+02 Score=32.70 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=63.3
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCC---cc----HHHHHHHhhccCCCH-HHHHHHHHHHHhcCChhhHHHHH
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDS---DA----NDILRQVLEDKSQEP-MVRHEAAEALGAIGDKSSISILE 108 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~---~~----~~~L~~~L~~~~~d~-~vr~~a~~aL~~~~~~~~~~~L~ 108 (500)
.+....|+++|+++...-+...+..|...-.+ ++ ...|....+.+...+ .-+..|.+.||.+..--.++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pgvd~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~~~~l~ 103 (844)
T TIGR00117 24 ANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGYNVHPLI 103 (844)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCCCHHHHH
Confidence 35677888888877544455556666544221 11 234444444332123 34888999999987766788999
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q psy10052 109 KYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 109 ~~l~d~~~~vr~~a~~aL~~~ 129 (500)
.+|.+.|..+...|+.+|.+.
T Consensus 104 ~~~~~~~~~~a~~a~~~l~~~ 124 (844)
T TIGR00117 104 DALDSQDANIAPIAAKALSHT 124 (844)
T ss_pred HHHhCCCHHHHHHHHHHHhce
Confidence 999988999999999999874
No 247
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=45.32 E-value=96 Score=26.80 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhc----CCc-------chHHHHHHHccCCCHHHHHHHHHHHHcc
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNI----GGK-------TAIQCISEAFADESALLKHELAYCLGQM 65 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~----~~~-------~~~~~L~~~l~~~~~~vR~~a~~~L~~~ 65 (500)
++.+++-|...+.+ .|..|.....++ +.+ ..+.+|..+|...|+.|...++.+|..+
T Consensus 40 Lpif~dGL~Et~~P--y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 40 LPIFFDGLRETEHP--YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred HHHHHhhhhccCcc--HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45566667666665 777776665554 322 2333333444444444444444444433
No 248
>PLN00094 aconitate hydratase 2; Provisional
Probab=44.66 E-value=1.4e+02 Score=32.55 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=84.0
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc---h----HHHHHHHcc---CCCHHHHHHHHHHHHccCCCccHH
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT---A----IQCISEAFA---DESALLKHELAYCLGQMKDSDAND 72 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~---~----~~~L~~~l~---~~~~~vR~~a~~~L~~~~~~~~~~ 72 (500)
....+.+|+++|+++... .+...+..|.++-.+. + ...|.+..+ .....-+..|++.||.|....-+.
T Consensus 92 ~~~q~~~~~~ll~~~~~~--~~~~~~~l~~~rv~pgvd~aa~vka~fl~~i~~g~~~~~~i~~~~a~~llg~m~ggynv~ 169 (938)
T PLN00094 92 DAKQVSELIAQLEAPKSE--DADRLVDLLVNRVPPGVDEAAYVKASWLAAVAKGETRSPLISRARAVEILGTMQGGYNIS 169 (938)
T ss_pred CHHHHHHHHHHhcCCCCc--cHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHhhccCCCcHH
Confidence 356778899999988655 6667788888765331 1 122333333 223355788999999997777789
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhh
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIG-DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ 138 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~ 138 (500)
.|+++|+ |..+-..|+++|...- --++...+.+..+..+. .....+++.++-.|....+..
T Consensus 170 ~l~~~l~----d~~~a~~a~~~l~~~~l~~d~~~~v~~~~~~gn~-~a~~v~~swa~aewf~~~~~~ 231 (938)
T PLN00094 170 PLVDALD----DDELGRIAADQLSHTLLVFDAFHDVQAKAKKGNA-YATQVMESWADAEWFTKKPPV 231 (938)
T ss_pred HHHHHhc----CHHHHHHHHHHHhhcEEeecchHHHHHHHHccCH-HHHHHHHHHhhhhhhhcCCCC
Confidence 9999994 3568888999988642 23444556666666554 334566666666666555443
No 249
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=44.35 E-value=1.3e+02 Score=25.39 Aligned_cols=27 Identities=30% Similarity=0.187 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 403 SISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 403 ~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
.+..+..++++ ..+...+..+|..+-.
T Consensus 117 ~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 117 FIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 34555555554 4566666777776654
No 250
>KOG4500|consensus
Probab=43.69 E-value=3.4e+02 Score=27.02 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=60.7
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC----------CccHHHHHHHhhccC---CCHHHHHHHHHHHHhcCCh---
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD----------SDANDILRQVLEDKS---QEPMVRHEAAEALGAIGDK--- 101 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~L~~~~---~d~~vr~~a~~aL~~~~~~--- 101 (500)
..+..+..++.+.|........-++|.+.. ......|+.+|..++ .+-.++.+++.+|..+--|
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 466677777777777777788888887632 345677777776521 2455666777777765422
Q ss_pred -------hhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 102 -------SSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 102 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
+..+.++..++-..|.|.+.-.-+++-+.
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 44566777777777777776666666554
No 251
>KOG2973|consensus
Probab=43.64 E-value=2.9e+02 Score=26.15 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=44.1
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcC-C---------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 71 NDILRQVLEDKSQEPMVRHEAAEALGAIG-D---------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 71 ~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
...+++++.+. .|.||..|++-+-.+. . ...++.+.+++++.++ ...|+.+|.++..+
T Consensus 5 l~elv~ll~~~--sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 5 LVELVELLHSL--SPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHHhccC--ChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 35678899988 7999999998665442 2 3567788999998888 66788888887754
No 252
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=41.90 E-value=2e+02 Score=23.67 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHccC--CCccHHHHHHHhhccCCCHHHHHHHHHHHHhc------------CChhhHHHHHHHhcC-
Q psy10052 49 DESALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQD- 113 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~~--~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d- 113 (500)
++||..-...+..+..-. ..+++..|.+-|.+. ++.|...|+..|..+ +..+++..|++++..
T Consensus 16 ~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k 93 (139)
T cd03567 16 EEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPK 93 (139)
T ss_pred CCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccc
Confidence 344444444444443321 123445555555555 455555555444332 233566667777743
Q ss_pred -----CCHHHHHHHHHHHHHhc
Q psy10052 114 -----PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 114 -----~~~~vr~~a~~aL~~~~ 130 (500)
.++.|+......+....
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 94 YLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 56788888887776654
No 253
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=41.30 E-value=4.2e+02 Score=27.29 Aligned_cols=112 Identities=17% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcC-----ChhhHHHHHHHhcCC--CHHHHHHHHHHH---hccC---CCccHH--------HHHHHhh-
Q psy10052 322 KERFRALFTLKNIG-----GKTAIQCISEAFADK--SALLKHELAYCL---GQMK---DSDAND--------ILRQVLE- 379 (500)
Q Consensus 322 ~~r~~a~~~L~~~~-----~~~~~~~L~~~l~~~--~~~vr~~a~~aL---~~l~---~~~~~~--------~L~~~l~- 379 (500)
..|...+..|.+.. .+..+..+...+.+. +..+|..+++-+ .... .+..+. .+...+.
T Consensus 298 ~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~ 377 (501)
T PF13001_consen 298 RLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQD 377 (501)
T ss_pred HHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccc
Confidence 34555555555432 244555666666666 556666665555 2111 112222 2223331
Q ss_pred -----cCCCCHHHHHHHHHHHhhcCC---------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 380 -----DKSQEPMVRHEAAEALGAIGD---------KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 380 -----~~~~~~~vR~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
+.+.+...|..+.++||.++. -..+..|-..+.++++++|.....||..|...-
T Consensus 378 ~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 378 SSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 123478999999999999864 245566666668899999999999999997644
No 254
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.13 E-value=1.8e+02 Score=23.60 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHhhc--CCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccc-cccCCCCCCCCCCCCCCchhhH
Q psy10052 384 EPMVRHEAAEALGAI--GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ-KDTGNIYGSVDPTPPLDDVSDI 460 (500)
Q Consensus 384 ~~~vR~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 460 (500)
+|..=...+..+..- +..+++..|.+-+.++++.+...|..-|..+-...+.... +. ...+.+
T Consensus 17 dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev--------------~s~~fl 82 (133)
T smart00288 17 DWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV--------------ASKEFL 82 (133)
T ss_pred CHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH--------------HhHHHH
Confidence 566555556555332 2346677777777788888888888887777655432211 00 124677
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 461 NKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 461 ~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
..|.+++.+......||.+...-+..-
T Consensus 83 ~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 83 NELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 777777765444333777666655443
No 255
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=39.91 E-value=5.3e+02 Score=28.14 Aligned_cols=145 Identities=17% Similarity=0.113 Sum_probs=82.4
Q ss_pred HHHHHhcCC-hhhHHHHHHHhc--CCCHHHHHHHHHHHhccCCC-ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccH
Q psy10052 328 LFTLKNIGG-KTAIQCISEAFA--DKSALLKHELAYCLGQMKDS-DANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS 403 (500)
Q Consensus 328 ~~~L~~~~~-~~~~~~L~~~l~--~~~~~vr~~a~~aL~~l~~~-~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~ 403 (500)
...+...|. .++...+...+. .++..+...........+.. .++..+.+++.....++.+...........+.+++
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A 822 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRA 822 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHH
Confidence 334444444 344555555554 23455555555555555543 36666666665443466777777777777777777
Q ss_pred HHHHHHhhc-C-CCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHH
Q psy10052 404 ISILEKYAQ-D-PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 481 (500)
Q Consensus 404 ~~~L~~~l~-d-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~ 481 (500)
+..+.+.+. . .++.+...-...+...+. -.+++..+.+++.....+..++..-+
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------------------~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGE------------------------ADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 777777663 2 233332222222222221 23677788888865444667888888
Q ss_pred HHhHhcCChhhHHHh
Q psy10052 482 FKLRDINSVESTLAL 496 (500)
Q Consensus 482 ~al~~~g~~~~~~~l 496 (500)
.++...|..+....+
T Consensus 879 ~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 879 LALLATGRKAEARKE 893 (899)
T ss_pred HHHHHcCCHHHHHHH
Confidence 888888876655444
No 256
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.59 E-value=4.5e+02 Score=27.14 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=54.0
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC----ChhhHHHH
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG----DKSSISIL 107 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~----~~~~~~~L 107 (500)
..+..|-+.|=.+.+.++..|+-.+|-.+. +.+...|...|+.+ +...+.+|+--||..- ..+....|
T Consensus 413 ~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~--s~k~~~aaiLGlg~afsGt~~eevl~lL 490 (881)
T COG5110 413 KGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSS--SSKHVIAAILGLGAAFSGTQAEEVLELL 490 (881)
T ss_pred hhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCC--chHHHHHHHhhhHHhhcCCcHHHHHHHh
Confidence 356667777766666777777766665432 23344455556655 5566666666665431 24566777
Q ss_pred HHHhcCCCH--HHHHHHHHHHHHh
Q psy10052 108 EKYAQDPVK--EVSETCYLALKRI 129 (500)
Q Consensus 108 ~~~l~d~~~--~vr~~a~~aL~~~ 129 (500)
..+..+.+. .+...|.-+|+.+
T Consensus 491 ~Pi~~std~pie~~~~asltLg~v 514 (881)
T COG5110 491 QPIMFSTDSPIEVVFFASLTLGSV 514 (881)
T ss_pred hhhhcCCCCcHHHHHHHHHhhhhe
Confidence 777766664 5556666666654
No 257
>KOG1932|consensus
Probab=39.26 E-value=6.2e+02 Score=28.67 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCC--HHHHHHHHHHHHHhchh
Q psy10052 62 LGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPV--KEVSETCYLALKRIQFV 132 (500)
Q Consensus 62 L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~~ 132 (500)
|..+.-.+..-.....|..+. |-..+..|++.|...........|...+.|+. ..+|.+|+.+|++....
T Consensus 635 i~~i~i~QPd~Mw~~QLr~dr-DVvAQ~EAI~~le~~p~~~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~ 706 (1180)
T KOG1932|consen 635 IREIHIEQPDFMWVYQLRQDR-DVVAQMEAIESLEALPSTASRSALTRTLEDERYFYRIRIAAAFALAKTANG 706 (1180)
T ss_pred hhhhhccCchHHHHHHHHhcc-cHHHHHHHHHHHHcCCcchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcc
Confidence 344433333344455664333 77789999999999988877788999998887 78999999999998753
No 258
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=38.84 E-value=1.5e+02 Score=24.39 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=45.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhccCCCcc---HHHHHHHhhcCCCCHHHHHHHHHHHhhcC--------CccHHHH
Q psy10052 338 TAIQCISEAFADKSALLKHELAYCLGQMKDSDA---NDILRQVLEDKSQEPMVRHEAAEALGAIG--------DKSSISI 406 (500)
Q Consensus 338 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~---~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--------~~~~~~~ 406 (500)
+..+.+..+|.+.+..++..|+.|+..++++.. -+.|.+++.+ ...|.+-..-...-+ .+..+|.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd----~~frdeL~~f~~~~~~~~I~~ehR~~l~pv 92 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDD----KTFRDELTTFNLSDESSVIEEEHRPELMPV 92 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCc----chHHHHHHhhcccCCcCCCCHHHHhHHHHH
Confidence 445677889999999999999999999988643 3445555543 445555444332221 1345666
Q ss_pred HHHhh
Q psy10052 407 LEKYA 411 (500)
Q Consensus 407 L~~~l 411 (500)
+..++
T Consensus 93 vlRIL 97 (141)
T PF07539_consen 93 VLRIL 97 (141)
T ss_pred HHHHH
Confidence 65554
No 259
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.76 E-value=2.2e+02 Score=23.29 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHhhc--CCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccc-cccCCCCCCCCCCCCCCchhhH
Q psy10052 384 EPMVRHEAAEALGAI--GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ-KDTGNIYGSVDPTPPLDDVSDI 460 (500)
Q Consensus 384 ~~~vR~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 460 (500)
+|..=...+..+..- +..+++..|.+-+..+++.++..|..-|..+-...+.... +. ...+.+
T Consensus 22 Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev--------------~~~~fl 87 (140)
T PF00790_consen 22 DWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV--------------ASKEFL 87 (140)
T ss_dssp -HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH--------------TSHHHH
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH--------------hHHHHH
Confidence 565555666655543 2246778888888889999999999988888765543322 11 235788
Q ss_pred HHHHHHHhcCCccHH--HHHHHHHHhHhc
Q psy10052 461 NKLKEILLNENEDLF--MRYKAMFKLRDI 487 (500)
Q Consensus 461 ~~l~~~l~~~~~~~~--~r~~a~~al~~~ 487 (500)
..|.+++.+...+.. ||.+++.-+..-
T Consensus 88 ~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 88 DELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 888888876655544 788777655543
No 260
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=37.83 E-value=1.5e+02 Score=32.20 Aligned_cols=127 Identities=17% Similarity=0.071 Sum_probs=81.5
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc-------hHHHHHHHccC---CCHHHHHHHHHHHHccCCCccHH
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT-------AIQCISEAFAD---ESALLKHELAYCLGQMKDSDAND 72 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~-------~~~~L~~~l~~---~~~~vR~~a~~~L~~~~~~~~~~ 72 (500)
....+..|+++|+++... .-...+..|.++-.+. -...|.+..+. ....-+..|++.||.|....-++
T Consensus 23 ~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~v~pgv~~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~~~ 100 (835)
T PRK09238 23 DAEQTAELVELLKNPPAG--EEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLISPEKAVELLGTMLGGYNVE 100 (835)
T ss_pred CHHHHHHHHHHhcCCCCc--cHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCCCCcCcCHHHHHHHHhhccCCCcHH
Confidence 445688999999987653 2334666777654321 12233344432 23355788999999997777789
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccch
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIG-DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEED 136 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 136 (500)
.|+++|.|. .+-..|+++|...- --++...+.+..+..+.. ....+++.++-.|....+
T Consensus 101 ~l~~~l~~~----~~~~~a~~~l~~~~l~~~~~~~~~~~~~~gn~~-a~~v~~swa~aewf~~~~ 160 (835)
T PRK09238 101 PLIDLLDDA----ELAPEAAEALKHTLLVFDAFHDVAEKAKAGNAY-AKEVLESWADAEWFTSRP 160 (835)
T ss_pred HHHHHhcCH----HHHHHHHHHHhccEEeeecHHHHHHHHHccCHH-HHHHHHHHhhcccCCCCC
Confidence 999999854 48888999988642 234566777777665543 345566666655554443
No 261
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.83 E-value=2.2e+02 Score=27.92 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=35.8
Q ss_pred cCCCCHHHHHHHHHHHhhcCC-------ccHHHHHHHhhcCCCHhHHHHHHHHH
Q psy10052 380 DKSQEPMVRHEAAEALGAIGD-------KSSISILEKYAQDPVKEVSETCYLAL 426 (500)
Q Consensus 380 ~~~~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL 426 (500)
+.+..|-+|..|++-+..+.+ ...++.+..++.+++.-|+.-|+.++
T Consensus 317 ~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 317 DVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 344579999999999987754 25778889999999999999988764
No 262
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=37.60 E-value=2.1e+02 Score=29.62 Aligned_cols=127 Identities=15% Similarity=0.031 Sum_probs=81.1
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc------h-HHHHHHHcc--CCCH-HHHHHHHHHHHccCCCccHHH
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT------A-IQCISEAFA--DESA-LLKHELAYCLGQMKDSDANDI 73 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~------~-~~~L~~~l~--~~~~-~vR~~a~~~L~~~~~~~~~~~ 73 (500)
...+.+|+++|++|... .+..+...|..+-.+. . ...|....+ -..| .-...|.+.|+.|....-+..
T Consensus 24 a~qtaeliELlk~pp~~--~~~~~l~ll~~rv~pGvd~AA~VKA~FL~ai~~gev~~p~Is~~~A~eLLgtM~GGyni~~ 101 (852)
T COG1049 24 AQQTAELVELLKNPPAG--EEEFLLDLLINRVPPGVDEAAYVKAGFLAAIAKGEVLSPLISPEKATELLGTMLGGYNIHP 101 (852)
T ss_pred HHHHHHHHHHhcCCCcc--hHHHHHHHHHccCCCCCchHHHHHHHHHHHHHcCCccccccCHHHHHHHHHhccCCCcHHH
Confidence 46678999999998776 8999999988875331 1 112333332 1123 346689999999977777899
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchh
Q psy10052 74 LRQVLEDKSQEPMVRHEAAEALGAIG-DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDK 137 (500)
Q Consensus 74 L~~~L~~~~~d~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ 137 (500)
|+++|.|. .+-..|+++|...- --+....+....+..++.- ...+++.++-.|....+.
T Consensus 102 Li~~l~d~----~ia~~Aae~Lk~tll~~D~f~dv~e~ak~Gn~~A-k~Vl~SwA~aewF~~~p~ 161 (852)
T COG1049 102 LIDLLDDA----AIAAIAAEALKHTLLMFDAFHDVAEKAKAGNAYA-KQVLQSWADAEWFLSRPA 161 (852)
T ss_pred HHHHhhhh----hhhHHHHHHhhheeeehhhHHHHHHHHhccCHHH-HHHHHHHhhhhhhhcCcc
Confidence 99999865 36667788887532 2234555666666655533 344555555555544443
No 263
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=37.41 E-value=60 Score=32.90 Aligned_cols=95 Identities=12% Similarity=0.196 Sum_probs=66.1
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHcc-------C----CCccHHHHHHHhhccCCCHHHHHHHHHHHHhc--CC--
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQM-------K----DSDANDILRQVLEDKSQEPMVRHEAAEALGAI--GD-- 100 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~-------~----~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~--~~-- 100 (500)
+....+.|+++|.+|+-.+..-+.-.+-.. + ....+..|+..+... |...|....|.|..+ +.
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK--DdaLqans~wvlrHlmyncq~ 506 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK--DDALQANSEWVLRHLMYNCQK 506 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc--hhhhhhcchhhhhhhhhcCcc
Confidence 346788899999887655544433333221 1 134678888888877 677888888887742 11
Q ss_pred --------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 101 --------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 101 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
..-+..++.+.+||...|+.++.+.|.++..+
T Consensus 507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 12346688889999999999999999998653
No 264
>KOG1992|consensus
Probab=36.40 E-value=6e+02 Score=27.71 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=73.8
Q ss_pred hHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCcc-hHHHHHHHcc-C-CCHHHHHHHHHHHHcc-----CC-------
Q psy10052 6 KILLIGQVLK---DSSKPLKERFRALFTLKNIGGKT-AIQCISEAFA-D-ESALLKHELAYCLGQM-----KD------- 67 (500)
Q Consensus 6 ~~~~L~~~L~---~~~~~~~~R~~A~~~L~~~~~~~-~~~~L~~~l~-~-~~~~vR~~a~~~L~~~-----~~------- 67 (500)
.++.|...|. +||+. +|..|-+.|...++.. ..-.++.++. + -++..|..|.-.+... ..
T Consensus 3 ~le~l~~~l~qTl~pdps--~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPS--VRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred cHHHHHHHHHhcCCCCCc--cCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 3455555553 34455 9999999999876543 3345666665 3 3789999988887643 11
Q ss_pred -----CccH-HHHHHHhhccCCCHHHHHHHHHHHHhcCC-------hhhHHHHHHHhcCCCHH----HHHHHHHHHHHhc
Q psy10052 68 -----SDAN-DILRQVLEDKSQEPMVRHEAAEALGAIGD-------KSSISILEKYAQDPVKE----VSETCYLALKRIQ 130 (500)
Q Consensus 68 -----~~~~-~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~----vr~~a~~aL~~~~ 130 (500)
.+.+ ..++.++-+. ...++..--++++-+|. +..+|.|.+.++..|-. |+..|-.-+.+..
T Consensus 81 i~~~~~e~ikslIv~lMl~s--~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSS--PFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred cchhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 1112 2233444444 47788888888888873 56778888888766643 3334443444443
No 265
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=36.27 E-value=3.3e+02 Score=24.63 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=22.5
Q ss_pred hhhHHHHHhhc-cCCCHhHHHHHHHHHhccCCC
Q psy10052 190 VESTLALTEGL-SHGSSLYRHEIAFVLGQMQNP 221 (500)
Q Consensus 190 ~~~i~~l~~~L-~~~~~~vr~~a~~aL~~~~~~ 221 (500)
.+.++.+...| ++.++.++..+++++..+...
T Consensus 120 ~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 120 VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 46677777777 667777777777777666543
No 266
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=36.08 E-value=2.1e+02 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=16.9
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 403 SISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 403 ~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
.+..|...++..++.|...+..+|.++
T Consensus 81 LI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 81 LIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 445555566666666666666666666
No 267
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=35.96 E-value=2.3e+02 Score=26.25 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=66.3
Q ss_pred cchHHHHHHHcc-CCCHHHHHHHHHHHHccCCCccHHHHHHHhh-cc--CCCHHHHHHHHHHHHhcCCh-hhHHHHHHHh
Q psy10052 37 KTAIQCISEAFA-DESALLKHELAYCLGQMKDSDANDILRQVLE-DK--SQEPMVRHEAAEALGAIGDK-SSISILEKYA 111 (500)
Q Consensus 37 ~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~-~~--~~d~~vr~~a~~aL~~~~~~-~~~~~L~~~l 111 (500)
..+...+.+.++ ++++..-..+++.....+....+..++.-+. .. +.++.+-...+...-..|.. .++..+.+.+
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666666664 5556555566666666655333333333222 11 12455555555555566653 5677777777
Q ss_pred -cCCC-HHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC-
Q psy10052 112 -QDPV-KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN- 188 (500)
Q Consensus 112 -~d~~-~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~- 188 (500)
.+|+ +.++...++.+...+..... ...+..+..... .++.. ...-..+....+
T Consensus 174 ~~~P~~~~~~~~l~~~li~~~~~~~~---------------------~~~l~~~~~~~~-~~~~~--~~~la~~~~~lg~ 229 (280)
T PF13429_consen 174 ELDPDDPDARNALAWLLIDMGDYDEA---------------------REALKRLLKAAP-DDPDL--WDALAAAYLQLGR 229 (280)
T ss_dssp HH-TT-HHHHHHHHHHHCTTCHHHHH---------------------HHHHHHHHHH-H-TSCCH--CHHHHHHHHHHT-
T ss_pred HcCCCCHHHHHHHHHHHHHCCChHHH---------------------HHHHHHHHHHCc-CHHHH--HHHHHHHhccccc
Confidence 3664 78888888887665542110 011222222221 22332 222222222223
Q ss_pred ChhhHHHHHhhcc-C-CCHhHHHHHHHHHhccCCC
Q psy10052 189 SVESTLALTEGLS-H-GSSLYRHEIAFVLGQMQNP 221 (500)
Q Consensus 189 ~~~~i~~l~~~L~-~-~~~~vr~~a~~aL~~~~~~ 221 (500)
..+++..+.+.++ + .++.+....+.++...|..
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 3467777777776 3 5788888888998888754
No 268
>KOG2011|consensus
Probab=35.60 E-value=1.6e+02 Score=32.89 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhcC--------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhh-ccccCcCCCCCCCCCC
Q psy10052 84 EPMVRHEAAEALGAIG--------DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ-KDTGNIYGSVDPTPPL 154 (500)
Q Consensus 84 d~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (500)
++.+|.-.++.||..- +...+..+--.|+|.+..||..++.+|..+-........ .+-.
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFt------------ 367 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFT------------ 367 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHH------------
Confidence 7899999999998642 224455555668999999999999999887643211111 0000
Q ss_pred CCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC-----ChhhHHHHHhhccCCCHhHHHHHHHHH
Q psy10052 155 DDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN-----SVESTLALTEGLSHGSSLYRHEIAFVL 215 (500)
Q Consensus 155 ~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~-----~~~~i~~l~~~L~~~~~~vr~~a~~aL 215 (500)
...-..+++.. +.+-+..||...+..+.... +.+-+..+..++-+.++.++.++..-+
T Consensus 368 --sRFK~RIVeMa-drd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 368 --SRFKDRIVEMA-DRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred --HHHHHHHHHHH-hhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHH
Confidence 11234556666 55566667877766554432 234556666677788888888877765
No 269
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=34.84 E-value=2.6e+02 Score=23.02 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhh--cCCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccc-cccCCCCCCCCCCCCCCchhhH
Q psy10052 384 EPMVRHEAAEALGA--IGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ-KDTGNIYGSVDPTPPLDDVSDI 460 (500)
Q Consensus 384 ~~~vR~~a~~aL~~--~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 460 (500)
+|..=...+..+.. .+..+++..|.+-+..+++.++..|..-|..+-...+.... +. ...+.+
T Consensus 21 dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev--------------as~~fl 86 (142)
T cd03569 21 DLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV--------------ASREFM 86 (142)
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH--------------hhHHHH
Confidence 44444444444432 23446677777777778888888888777777654322111 00 234777
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 461 NKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 461 ~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
+.|.+++.+ ..+..||.+...-+..-
T Consensus 87 ~~l~~l~~~-~~~~~Vk~kil~li~~W 112 (142)
T cd03569 87 DELKDLIKT-TKNEEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHcc-cCCHHHHHHHHHHHHHH
Confidence 778877754 45556777776655543
No 270
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=34.61 E-value=4.5e+02 Score=25.77 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=61.3
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhc-CCcchHHHHH---------HHcc--CCCHHHHHHHHHHHHcc-----CC---
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNI-GGKTAIQCIS---------EAFA--DESALLKHELAYCLGQM-----KD--- 67 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~-~~~~~~~~L~---------~~l~--~~~~~vR~~a~~~L~~~-----~~--- 67 (500)
+.+...|-+++.+ +|..+.|.+.-. .+...+..+. ..|. ..+..-|.+|++.+..+ +.
T Consensus 28 ~~i~~~lL~~~~~--vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKE--VRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHCCCcHH--HHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3344344444443 777777777643 3333333322 2332 23445566666665543 11
Q ss_pred -CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC--Ch------hhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 68 -SDANDILRQVLEDKSQEPMVRHEAAEALGAIG--DK------SSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 68 -~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~--~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
...+..|+.+.+++ +...|..+++.|.++. +| +.+..|...+.|+...+....+.++-.+
T Consensus 106 ~~~vvralvaiae~~--~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 106 PRGVVRALVAIAEHE--DDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYL 174 (371)
T ss_pred CHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence 23456666666665 4567777777777654 22 3345566666665444555555554443
No 271
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=33.81 E-value=4.1e+02 Score=26.81 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=52.3
Q ss_pred chHHHHHHHcc--CCCHHHHHHHHHHHHccC-CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHh-c
Q psy10052 38 TAIQCISEAFA--DESALLKHELAYCLGQMK-DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-SSISILEKYA-Q 112 (500)
Q Consensus 38 ~~~~~L~~~l~--~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-~~~~~L~~~l-~ 112 (500)
.+.+.|..+++ -+|+..-..+...+-..+ .+++.+.+.+.+.-.+..+.++..-.++|-+.+.+ +++..|..++ +
T Consensus 324 ~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 45566666654 334555555555555543 35666777776665432366677777777766665 4455555555 3
Q ss_pred CCC-HHHHHHHHHHHHHhch
Q psy10052 113 DPV-KEVSETCYLALKRIQF 131 (500)
Q Consensus 113 d~~-~~vr~~a~~aL~~~~~ 131 (500)
+++ +..-..-+++-+..+.
T Consensus 404 ~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred CCCCchHHHHHHHHHHHhCc
Confidence 332 4444455555555443
No 272
>KOG1222|consensus
Probab=33.62 E-value=5.2e+02 Score=26.18 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=60.3
Q ss_pred CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC----------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchh
Q psy10052 68 SDANDILRQVLEDKSQEPMVRHEAAEALGAIG----------DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDK 137 (500)
Q Consensus 68 ~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ 137 (500)
...+..|+++|+-+ +...-...+..|.++. ..+.+..|.+++...++.+|...+.-+-++..+.....
T Consensus 303 kniV~mLVKaLdr~--n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 303 KNIVAMLVKALDRS--NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HhHHHHHHHHHccc--chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 34577788888877 4566666666666543 23577889999999999999999999998876554332
Q ss_pred hccccCcCCCCCCCCCCCCcccHHHHHHHhcCC
Q psy10052 138 QKDTGNIYGSVDPTPPLDDVSDINKLKEILLNE 170 (500)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~ 170 (500)
+ ..+.+.+|.+..++.++
T Consensus 381 K---------------Mv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 381 K---------------MVNGGLLPHLASLLDSD 398 (791)
T ss_pred H---------------HhhccchHHHHHHhCCc
Confidence 2 11134688888888543
No 273
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=32.85 E-value=89 Score=18.50 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=17.3
Q ss_pred HHHHHhhc----CCccHHHHHHHhhcCCCHhHH
Q psy10052 391 AAEALGAI----GDKSSISILEKYAQDPVKEVS 419 (500)
Q Consensus 391 a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr 419 (500)
|+.+||-+ ++.+++..|..++.|.+..++
T Consensus 2 A~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~ 34 (35)
T PF01851_consen 2 AILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMI 34 (35)
T ss_dssp HHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHH
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHhcccccc
Confidence 44455543 345677888888877766654
No 274
>PRK14015 pepN aminopeptidase N; Provisional
Probab=32.70 E-value=7.4e+02 Score=27.67 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccC-CCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHH--HHHHHHHHhhcCC
Q psy10052 177 RYKAMFKLRDINSVESTLALTEGLSH-GSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMV--RHECAEALGAIAT 253 (500)
Q Consensus 177 r~~A~~~L~~~~~~~~i~~l~~~L~~-~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~v--r~~a~~aL~~~~~ 253 (500)
|..++..|....+++..........+ .+-.-|..|+.+|.....+..-..|..+...-..++-| +.-++.+ ....
T Consensus 685 ~n~~l~~l~~~~~~~~~~~~~~~~~~a~~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa--~~~~ 762 (875)
T PRK14015 685 RNVCLSYLAAADDEEAAELAEAQFDQADNMTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQA--TSPA 762 (875)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHh--CCCC
Confidence 33445555555554444444444443 45566677777776655544333333333221123333 2222232 2334
Q ss_pred chHHHHHHHhhcCC
Q psy10052 254 PECYDVLRKYLSDE 267 (500)
Q Consensus 254 ~~~~~~L~~~l~~~ 267 (500)
++.+..+.++++++
T Consensus 763 ~~~~~~v~~l~~hp 776 (875)
T PRK14015 763 PDTLERVRALMQHP 776 (875)
T ss_pred cCHHHHHHHHhcCC
Confidence 55677777777766
No 275
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=32.67 E-value=95 Score=18.64 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=14.6
Q ss_pred cCCCHHHHHHHHHHHHHh
Q psy10052 112 QDPVKEVSETCYLALKRI 129 (500)
Q Consensus 112 ~d~~~~vr~~a~~aL~~~ 129 (500)
.|+|+-||.+|..+|..+
T Consensus 16 ~D~D~lvr~hA~~~Le~L 33 (36)
T PF10304_consen 16 TDNDDLVREHAQDALEEL 33 (36)
T ss_pred hCCcHHHHHHHHHHHHHH
Confidence 678888898888888765
No 276
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=31.79 E-value=99 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHHHHHhh--cCCCHhHHHHHHHHHHHhhhhh
Q psy10052 404 ISILEKYA--QDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 404 ~~~L~~~l--~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
++.+.... ++.+|.+|+.|.++++.+-..+
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 56666654 6789999999999999997654
No 277
>PLN00094 aconitate hydratase 2; Provisional
Probab=31.55 E-value=3e+02 Score=30.28 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=60.6
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCC---cc----HHHHHHHhhccCCCH-HHHHHHHHHHHhcCChhhHHHHH
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDS---DA----NDILRQVLEDKSQEP-MVRHEAAEALGAIGDKSSISILE 108 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~---~~----~~~L~~~L~~~~~d~-~vr~~a~~aL~~~~~~~~~~~L~ 108 (500)
.+....|+++|+++...-+...+..|...-.+ ++ ...|....+.+...+ .-+..|++.||.+..--.+..|+
T Consensus 93 ~~q~~~~~~ll~~~~~~~~~~~~~l~~~rv~pgvd~aa~vka~fl~~i~~g~~~~~~i~~~~a~~llg~m~ggynv~~l~ 172 (938)
T PLN00094 93 AKQVSELIAQLEAPKSEDADRLVDLLVNRVPPGVDEAAYVKASWLAAVAKGETRSPLISRARAVEILGTMQGGYNISPLV 172 (938)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHhhccCCCcHHHHH
Confidence 35778899999877555555566666544221 11 234444444332123 34889999999987666778899
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q psy10052 109 KYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 109 ~~l~d~~~~vr~~a~~aL~~~ 129 (500)
.+|. |..+...|+.+|.+.
T Consensus 173 ~~l~--d~~~a~~a~~~l~~~ 191 (938)
T PLN00094 173 DALD--DDELGRIAADQLSHT 191 (938)
T ss_pred HHhc--CHHHHHHHHHHHhhc
Confidence 9984 778999999999874
No 278
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=31.07 E-value=7.3e+02 Score=27.07 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHhc--CCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCC
Q psy10052 306 KILLIGQVLKDSSKPLKERFRALFTLKNIGG-KTAIQCISEAFA--DKSALLKHELAYCLGQMKDSDANDILRQVLEDKS 382 (500)
Q Consensus 306 ~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-~~~~~~L~~~l~--~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~ 382 (500)
....+.+.+.....+..............+. ..+...+..++. .+++.+.....+.....+.+.++..+.+.+....
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Confidence 3444555555443334444444444444554 445556655553 3456667777777777777778888877776443
Q ss_pred CCHHHHHHHHHHHhhcCC-ccHHHHHHHhhc--CCCHhHHHHHHHHHHHhhh
Q psy10052 383 QEPMVRHEAAEALGAIGD-KSSISILEKYAQ--DPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 383 ~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~--d~~~~vr~~A~~aL~~l~~ 431 (500)
.++.+-..-..++...+. .+++..+.+.+. ..++.++...+.++...+.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 355555444455555554 457778888773 2467777777777666654
No 279
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=29.82 E-value=5.9e+02 Score=25.59 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=41.4
Q ss_pred cHHHHHHHhh-cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHH
Q psy10052 402 SSISILEKYA-QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 480 (500)
Q Consensus 402 ~~~~~L~~~l-~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a 480 (500)
+.+..|.+++ .+.|+.+-..||.=+|.+-..-+....-. ..-..=..+.+++ +|++..||++|
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~--------------~~lg~K~~vM~Lm--~h~d~~Vr~eA 416 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVV--------------EQLGGKQRVMRLL--NHEDPNVRYEA 416 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHH--------------HHcCcHHHHHHHh--cCCCHHHHHHH
Confidence 4567777777 34567777777777777654432111100 0011223345555 46666799999
Q ss_pred HHHhHhc
Q psy10052 481 MFKLRDI 487 (500)
Q Consensus 481 ~~al~~~ 487 (500)
..+++++
T Consensus 417 L~avQkl 423 (429)
T cd00256 417 LLAVQKL 423 (429)
T ss_pred HHHHHHH
Confidence 9999886
No 280
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.59 E-value=3.4e+02 Score=26.33 Aligned_cols=60 Identities=22% Similarity=0.134 Sum_probs=32.1
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---C------cchHHHHHHHccCCCHHHHHHHHHHHHccC
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIG---G------KTAIQCISEAFADESALLKHELAYCLGQMK 66 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~---~------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~ 66 (500)
.++..++.+++.++.. .|..++..++... + ....+.+..+|.|+++.+|.+++.+|++..
T Consensus 7 ~~~~~~i~~~~~a~~~--eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~ 75 (364)
T COG5330 7 STDQDLIRLLEEASSG--ERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQCE 75 (364)
T ss_pred hhHHHHHHHhcCCChh--HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhCC
Confidence 4556667777776664 6666666665421 1 012222333445666666666666666553
No 281
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=29.49 E-value=3.7e+02 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=14.4
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 405 SILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 405 ~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
+.+.....+++..+|..+...+...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~ 132 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRL 132 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4555566666666666665555443
No 282
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=28.58 E-value=5.7e+02 Score=25.05 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=36.0
Q ss_pred HHHhcCCcchHHHHHHHcc-CCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHH
Q psy10052 30 TLKNIGGKTAIQCISEAFA-DESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILE 108 (500)
Q Consensus 30 ~L~~~~~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~ 108 (500)
.|...+++.......+.++ ..+-.-|..|+.+|.....+.....|..+.+.-..++.|--.=...-+....++.+..+.
T Consensus 227 yL~~~~~~~~~~la~~qy~~A~nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~~l~~V~ 306 (367)
T PF11940_consen 227 YLAAADDPEAAELAQEQYKSADNMTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPDTLERVK 306 (367)
T ss_dssp HHHHCTCTHHHHHHHHHHHHSSSHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STTHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCccHHHHHH
Confidence 3333334344444444444 334455555666665554444434444333332223444221111112222234555555
Q ss_pred HHhcCCC
Q psy10052 109 KYAQDPV 115 (500)
Q Consensus 109 ~~l~d~~ 115 (500)
++++||.
T Consensus 307 ~L~~Hp~ 313 (367)
T PF11940_consen 307 KLMQHPA 313 (367)
T ss_dssp HHTTSTT
T ss_pred HHhcCCC
Confidence 5555553
No 283
>PF15565 Imm16: Immunity protein 16
Probab=28.11 E-value=2.2e+02 Score=22.13 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy10052 57 ELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKY 110 (500)
Q Consensus 57 ~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~ 110 (500)
.++..+...++.+.++.|...+.|.. +.+|....+..+...+....++.+...
T Consensus 20 ~~L~~l~~~~d~~~I~~L~~~F~D~~-d~eVmf~lvh~lE~~~~~~~l~~l~~~ 72 (106)
T PF15565_consen 20 EALNELAKYPDNDVIDDLCLIFDDET-DHEVMFSLVHFLEHFDMEEYLPALAEA 72 (106)
T ss_pred HHHHHHHhcCCHhHHHHHHHHhcCcc-chHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 56666677777777788888887774 557777777777766655555444443
No 284
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.04 E-value=5.4e+02 Score=27.64 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=75.7
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC----CcchHHHHHHHc-cCCCHHHHHHHHHHHHccCCC---ccHHHHH
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIG----GKTAIQCISEAF-ADESALLKHELAYCLGQMKDS---DANDILR 75 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~----~~~~~~~L~~~l-~~~~~~vR~~a~~~L~~~~~~---~~~~~L~ 75 (500)
+.++..|+..|.+++.. +.-.+-..+.+.- ++-.+..|+.++ +..+ ..++..|..+..+ .....|-
T Consensus 3 ~~~~~~l~~~l~s~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s----~~~~~il~~~~~P~~K~~~~~l~ 76 (668)
T PF04388_consen 3 QASITELLSLLESNDLS--VLEEIKALLQELLNSDREPWLVNGLVDYYLSTNS----QRALEILVGVQEPHDKHLFDKLN 76 (668)
T ss_pred cccHHHHHHHhcCCchh--hHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCc----HHHHHHHHhcCCccHHHHHHHHH
Confidence 56788999999999875 4444444444322 233566666654 3444 2456667676655 3345555
Q ss_pred HHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHh-cCCCHHHHHHHHHHHHHhc
Q psy10052 76 QVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYA-QDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 76 ~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~ 130 (500)
..+.. +..|..++..||.+-. ...++.|+++| .|.+..+-..|+.+|..+-
T Consensus 77 ~~~~~----~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 77 DYFVK----PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHcC----chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 55554 4578899999987632 24567777777 6888888888888887764
No 285
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.77 E-value=3.2e+02 Score=21.95 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhc-------CChhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 86 MVRHEAAEALGAI-------GDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 86 ~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
.||...+.++..+ .+++.++.+++.++. ++.........|..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 3455555555443 235667777776666 3444445555555443
No 286
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=27.72 E-value=1.7e+02 Score=29.89 Aligned_cols=97 Identities=11% Similarity=0.201 Sum_probs=66.5
Q ss_pred cCChhhHHHHHHHhcCCCHHHHHHHHHHHhc----cC-------CCccHHHHHHHhhcCCCCHHHHHHHHHHHhhc--CC
Q psy10052 334 IGGKTAIQCISEAFADKSALLKHELAYCLGQ----MK-------DSDANDILRQVLEDKSQEPMVRHEAAEALGAI--GD 400 (500)
Q Consensus 334 ~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~----l~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~--~~ 400 (500)
+.+....+.|+++|.+++..+..-+...+.+ +. ....+..|.+++..+ +..+|....+.|-.+ +.
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK--DdaLqans~wvlrHlmync 504 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK--DDALQANSEWVLRHLMYNC 504 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc--hhhhhhcchhhhhhhhhcC
Confidence 3456788899999988655443322222221 11 134788888888766 678888888887643 11
Q ss_pred ----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q psy10052 401 ----------KSSISILEKYAQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 401 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
.-.+..+..+.+|+...|+....+.|+++...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 12356678888999999999999999998763
No 287
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=27.58 E-value=2.5e+02 Score=20.67 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhc----------CChhhHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10052 84 EPMVRHEAAEALGAI----------GDKSSISILEKYAQDPVKEVSETCYLALK 127 (500)
Q Consensus 84 d~~vr~~a~~aL~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 127 (500)
+..||...++++..+ |++..+..|.....|++..+-..|.+.+.
T Consensus 31 ~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 31 SIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 455555555555443 34455555666666666666666665553
No 288
>KOG1992|consensus
Probab=27.33 E-value=3.8e+02 Score=29.08 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=63.7
Q ss_pred HHHHHHHcc---CCCHHHHHHHHHHHHccCC-CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC---------------
Q psy10052 40 IQCISEAFA---DESALLKHELAYCLGQMKD-SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------------- 100 (500)
Q Consensus 40 ~~~L~~~l~---~~~~~vR~~a~~~L~~~~~-~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~--------------- 100 (500)
.+.|.+.|. ++||.+|..+=++|..... ....=.|+.++..+.+|+.+|.+|+-.+.+.-.
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~ 83 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIE 83 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccch
Confidence 345555553 6779999999999988854 344456778888877789999999988865321
Q ss_pred --hhh-HHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 101 --KSS-ISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 101 --~~~-~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
.+. -..++.++-+....++..--++++-++.
T Consensus 84 ~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~ 117 (960)
T KOG1992|consen 84 EDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGK 117 (960)
T ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhc
Confidence 011 2345555566667788888888888874
No 289
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.96 E-value=3.6e+02 Score=22.15 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHhccCC--CccHHHHHHHhhcCCCCHHHHHHHHHHHhhc------------CCccHHHHHHHhhcC-
Q psy10052 349 DKSALLKHELAYCLGQMKD--SDANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQD- 413 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~~--~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~------------~~~~~~~~L~~~l~d- 413 (500)
++|+..-...|..+..-.. ..++..|.+-+.+. ++.+...|+..|... +..+.+..|.+++..
T Consensus 16 ~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k 93 (139)
T cd03567 16 EEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPK 93 (139)
T ss_pred CCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccc
Confidence 4556666666666643221 13566666777666 577777776665432 234566677777742
Q ss_pred -----CCHhHHHHHHHHHHHhhh
Q psy10052 414 -----PVKEVSETCYLALKRIQF 431 (500)
Q Consensus 414 -----~~~~vr~~A~~aL~~l~~ 431 (500)
.++.|+.....-+..+..
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 94 YLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Confidence 578899888888887764
No 290
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=26.61 E-value=8.2e+02 Score=26.21 Aligned_cols=218 Identities=16% Similarity=0.103 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHcc-CC-CHHHHHHHHHHHHccCC-CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC
Q psy10052 23 ERFRALFTLKNIGGKTAIQCISEAFA-DE-SALLKHELAYCLGQMKD-SDANDILRQVLEDKSQEPMVRHEAAEALGAIG 99 (500)
Q Consensus 23 ~R~~A~~~L~~~~~~~~~~~L~~~l~-~~-~~~vR~~a~~~L~~~~~-~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~ 99 (500)
....++..+..-..+.++..+.+++. +| ++.........+...+. ..++..+.+.+.-.+.++.+......++...+
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 34444333332223457777777775 44 45665555666666654 45677788888754336677777777777777
Q ss_pred Ch-hhHHHHHHHh-cCCC-HHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCC-CcCHH
Q psy10052 100 DK-SSISILEKYA-QDPV-KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNE-NEDLF 175 (500)
Q Consensus 100 ~~-~~~~~L~~~l-~d~~-~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~-~~~~~ 175 (500)
.. .++..+.+.+ .+++ +...... ..+.+.+.. +.++..+..++... ..+..
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~------------------------~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRL------------------------PEDHDLARALLPFFALERQE 213 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCH------------------------HHHHHHHHHHHhcCCCcchh
Confidence 64 3444454443 2333 3332222 122222211 22344444444321 11111
Q ss_pred HHHHHHHHHHcCCC-hhhHHHHHhhccC--CCHhHHHHHHHHHhccCCCC-----cHHHHHHHhhccCCCHHHHHHHHHH
Q psy10052 176 MRYKAMFKLRDINS-VESTLALTEGLSH--GSSLYRHEIAFVLGQMQNPS-----SIPALTSALEDQTQNEMVRHECAEA 247 (500)
Q Consensus 176 ~r~~A~~~L~~~~~-~~~i~~l~~~L~~--~~~~vr~~a~~aL~~~~~~~-----~i~~L~~~l~~~~~~~~vr~~a~~a 247 (500)
........+...+. .+++..+.+.+.. .++.++......+...+... ++..+...+.-...++.+...-...
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 12222334444444 3456666555543 35566666666665565433 5666666665433455566555555
Q ss_pred HhhcCC-chHHHHHHHhhc
Q psy10052 248 LGAIAT-PECYDVLRKYLS 265 (500)
Q Consensus 248 L~~~~~-~~~~~~L~~~l~ 265 (500)
+...+. ..++..+.+.+.
T Consensus 294 l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 555554 345666666554
No 291
>PRK04330 hypothetical protein; Provisional
Probab=26.05 E-value=2.8e+02 Score=20.65 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHH
Q psy10052 309 LIGQVLKDSSKPLKERFRALFTLK 332 (500)
Q Consensus 309 ~l~~~l~~~~~~~~~r~~a~~~L~ 332 (500)
.|-++-.|++-+...|..-...++
T Consensus 59 ~LdeIs~DPNmP~h~RT~IW~ivS 82 (88)
T PRK04330 59 ILDEISNDPNMPLHTRTLIWNIVS 82 (88)
T ss_pred HHHHhhcCCCCChHHHHHHHHHHH
Confidence 566677777777777755444443
No 292
>KOG1248|consensus
Probab=26.04 E-value=1e+03 Score=27.18 Aligned_cols=201 Identities=11% Similarity=0.074 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHHHHccCCC--------ccH----HHHHHHhhccCCCHHHHHHHHHHHHhcC---C-------hhhHHH
Q psy10052 49 DESALLKHELAYCLGQMKDS--------DAN----DILRQVLEDKSQEPMVRHEAAEALGAIG---D-------KSSISI 106 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~~~~--------~~~----~~L~~~L~~~~~d~~vr~~a~~aL~~~~---~-------~~~~~~ 106 (500)
+.+..++..+-+.|..+-.. .-+ ..|.+-+++. ...+|.....+|..+- + +..++.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~--~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS--SSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45789999998888876321 112 3333333444 4556777777766542 2 123443
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHH-
Q psy10052 107 LEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLR- 185 (500)
Q Consensus 107 L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~- 185 (500)
++=.+++.+..-|..|...|..++....-. ..+ -+|...+. +..+..+...+..+ ...++..-+.++.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~--d~g------~e~~~~~l-nefl~~Isagl~gd--~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSL--DDG------NEPASAIL-NEFLSIISAGLVGD--STRVVASDIVAITH 811 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhh--ccc------ccchHHHH-HHHHHHHHhhhccc--HHHHHHHHHHHHHH
Confidence 333448888888888888888777210000 000 11100000 23344444444222 2223332122222
Q ss_pred ------cCCChhhH----HHHHhhccCCCHhHHHHHHHHHhccC-----------CCCcHHHHHHHhhccCCCHHHHHHH
Q psy10052 186 ------DINSVEST----LALTEGLSHGSSLYRHEIAFVLGQMQ-----------NPSSIPALTSALEDQTQNEMVRHEC 244 (500)
Q Consensus 186 ------~~~~~~~i----~~l~~~L~~~~~~vr~~a~~aL~~~~-----------~~~~i~~L~~~l~~~~~~~~vr~~a 244 (500)
++.+.+.+ ..+.-.|...++.++..|+..+..+- .++.+|.+..+.++ ....+|..+
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d--~k~~~r~Kv 889 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD--HKIKVRKKV 889 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh--hhHHHHHHH
Confidence 23344444 44444667888999998888764332 12355666665555 345566655
Q ss_pred HHHHhhcCCchHHHHHHHhh
Q psy10052 245 AEALGAIATPECYDVLRKYL 264 (500)
Q Consensus 245 ~~aL~~~~~~~~~~~L~~~l 264 (500)
-.-|-.+...-....|..++
T Consensus 890 r~LlekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 890 RLLLEKLIRKFGAEELESFL 909 (1176)
T ss_pred HHHHHHHHHHhCHHHHHhhC
Confidence 55444333322333333333
No 293
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=25.59 E-value=9.7e+02 Score=26.74 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccC-CCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCch
Q psy10052 177 RYKAMFKLRDINSVESTLALTEGLSH-GSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPE 255 (500)
Q Consensus 177 r~~A~~~L~~~~~~~~i~~l~~~L~~-~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~ 255 (500)
|..++..|...++++.........++ .+-.-|..|+.+|.....+.....|..+...-..++-|--.-...-+....++
T Consensus 675 ~n~~l~~l~~~~~~~~~~~~~~~~~~a~~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~ 754 (863)
T TIGR02414 675 RNACLSYLSAADDAEIRNLALEQFKSADNMTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATSPRPD 754 (863)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCccc
Confidence 34455555555555555555555544 45566677777776655543333333333221123333222222222333455
Q ss_pred HHHHHHHhhcCC
Q psy10052 256 CYDVLRKYLSDE 267 (500)
Q Consensus 256 ~~~~L~~~l~~~ 267 (500)
.++.+.+++.++
T Consensus 755 ~~~~v~~l~~h~ 766 (863)
T TIGR02414 755 TLERVKALLQHP 766 (863)
T ss_pred HHHHHHHHhcCC
Confidence 677777777766
No 294
>PRK04330 hypothetical protein; Provisional
Probab=25.45 E-value=2.9e+02 Score=20.59 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=14.6
Q ss_pred hHHHHHHHhcCCC--HHHHHHHHHHHHHh
Q psy10052 103 SISILEKYAQDPV--KEVSETCYLALKRI 129 (500)
Q Consensus 103 ~~~~L~~~l~d~~--~~vr~~a~~aL~~~ 129 (500)
++..|-...+||+ .+.|-.....++.+
T Consensus 56 AIs~LdeIs~DPNmP~h~RT~IW~ivS~L 84 (88)
T PRK04330 56 AISILDEISNDPNMPLHTRTLIWNIVSQL 84 (88)
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 4455556667776 34555444444443
No 295
>KOG0392|consensus
Probab=25.00 E-value=8.5e+02 Score=28.22 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=52.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHH-HH
Q psy10052 102 SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRY-KA 180 (500)
Q Consensus 102 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~-~A 180 (500)
...|.+..+..+.++.+|.+|+.+++.+......+.- ...+..++..+.+. +..+|. .+
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m------------------~~v~~~~~~ll~~~--~~~~~r~~a 875 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETM------------------ATVINGFLPLLGDL--DKFVRRQGA 875 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhhhccch--hhHhhhhhH
Confidence 3456677777888888888888888876543322111 11234444444332 222333 33
Q ss_pred HHHHHc------CCC----hhhHHHHHhhccCCCHhHHHHHHHHHhc
Q psy10052 181 MFKLRD------INS----VESTLALTEGLSHGSSLYRHEIAFVLGQ 217 (500)
Q Consensus 181 ~~~L~~------~~~----~~~i~~l~~~L~~~~~~vr~~a~~aL~~ 217 (500)
...+.. .+. +-.++.+...+.+....||..+-+.+..
T Consensus 876 ~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~ 922 (1549)
T KOG0392|consen 876 DELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAK 922 (1549)
T ss_pred HHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHH
Confidence 222211 111 1245666667777777788777776654
No 296
>KOG1993|consensus
Probab=24.98 E-value=3.4e+02 Score=29.33 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC
Q psy10052 109 KYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 188 (500)
Q Consensus 109 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~ 188 (500)
+...++|+.|+.-|-..|.+.... ++....|.....+.+.+..+|+.|+.-+.+.-
T Consensus 7 q~Ats~d~~v~k~AE~qLr~WEtq------------------------PGF~~~L~sI~l~~t~dv~vRWmAviyfKNgI 62 (978)
T KOG1993|consen 7 QQATSQDHIVVKPAEAQLRQWETQ------------------------PGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGI 62 (978)
T ss_pred HHhcCCCcccchhHHHHHHhhccC------------------------CcHHHHHHHHHhccccceeeeeehhhhHhcch
Confidence 344677788888888888875431 45678888888777778889999988877632
Q ss_pred C------------hh----hHHHHHhhccCCCHhHHHHHHHHHhccC-------CCCcHHHHHHHhhc
Q psy10052 189 S------------VE----STLALTEGLSHGSSLYRHEIAFVLGQMQ-------NPSSIPALTSALED 233 (500)
Q Consensus 189 ~------------~~----~i~~l~~~L~~~~~~vr~~a~~aL~~~~-------~~~~i~~L~~~l~~ 233 (500)
+ ++ .-..++.....+++.+..+.+..++++. -|+.+|.|.+.+++
T Consensus 63 dryWR~~~~~sl~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~ 130 (978)
T KOG1993|consen 63 DRYWRRNTKMSLPPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQS 130 (978)
T ss_pred hHHhhcCCcccCCHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 1 11 1233444555566777766666666654 24667777777765
No 297
>KOG1087|consensus
Probab=24.48 E-value=1.6e+02 Score=29.81 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=38.8
Q ss_pred ccCCCHHHHHHHHHHHHcc--CCCccHHHHHHHhhccCCCHHHHHHHHHHHHh------------cCChhhHHHHHHHhc
Q psy10052 47 FADESALLKHELAYCLGQM--KDSDANDILRQVLEDKSQEPMVRHEAAEALGA------------IGDKSSISILEKYAQ 112 (500)
Q Consensus 47 l~~~~~~vR~~a~~~L~~~--~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~------------~~~~~~~~~L~~~l~ 112 (500)
|.++||.+-.+.+..+-.- +..+++-.|.+-+.+. .+.|...|+..|.. +...++++.++++.+
T Consensus 14 l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k--~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k 91 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSK--NSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPK 91 (470)
T ss_pred ccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 3455555555555554332 2234455555555554 34455555444431 122344555555553
Q ss_pred C--CCHHHHHHHHHHHHHhc
Q psy10052 113 D--PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 113 d--~~~~vr~~a~~aL~~~~ 130 (500)
. .+-.||..++..|....
T Consensus 92 ~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 92 NKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred cCCcchhHHHHHHHHHHHHH
Confidence 2 34556666665555443
No 298
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=24.37 E-value=4.4e+02 Score=28.92 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=58.5
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCC---cc----HHHHHHHhhccCCCH-HHHHHHHHHHHhcCChhhHHHHH
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDS---DA----NDILRQVLEDKSQEP-MVRHEAAEALGAIGDKSSISILE 108 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~---~~----~~~L~~~L~~~~~d~-~vr~~a~~aL~~~~~~~~~~~L~ 108 (500)
.+....|+++|+++...-....+..|...-.+ ++ ...|....+.+...+ .-+..|++.||.+..--.+..|+
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~v~pgv~~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~~~~l~ 103 (835)
T PRK09238 24 AEQTAELVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLISPEKAVELLGTMLGGYNVEPLI 103 (835)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCCCCcCcCHHHHHHHHhhccCCCcHHHHH
Confidence 35678889999866544222245555443221 11 244555555442223 34889999999987766778899
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q psy10052 109 KYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 109 ~~l~d~~~~vr~~a~~aL~~~ 129 (500)
.+|. +..+...|+.+|.+.
T Consensus 104 ~~l~--~~~~~~~a~~~l~~~ 122 (835)
T PRK09238 104 DLLD--DAELAPEAAEALKHT 122 (835)
T ss_pred HHhc--CHHHHHHHHHHHhcc
Confidence 9998 456888999999764
No 299
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.08 E-value=6.5e+02 Score=24.16 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCC----cchHHHHHHHcc-CCCHHHHHHHHHHHHccC-------CCccHHHHHHHhhccCCCHHHHHH
Q psy10052 23 ERFRALFTLKNIGG----KTAIQCISEAFA-DESALLKHELAYCLGQMK-------DSDANDILRQVLEDKSQEPMVRHE 90 (500)
Q Consensus 23 ~R~~A~~~L~~~~~----~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~L~~~~~d~~vr~~ 90 (500)
.|......|..... ...+..|..++. +.++......+.+++..- ....+..+.+.+++. .+.+|+.
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k--k~~vR~~ 80 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK--KPPVRRA 80 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC--CCcHHHH
Confidence 67777777777664 345566666664 778888888888777542 345678888899988 5669998
Q ss_pred HHHHHHhcC
Q psy10052 91 AAEALGAIG 99 (500)
Q Consensus 91 a~~aL~~~~ 99 (500)
-+..+|..-
T Consensus 81 w~~~~~~~~ 89 (339)
T PF12074_consen 81 WLLCLGEAL 89 (339)
T ss_pred HHHHHHHHH
Confidence 888888753
No 300
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=23.82 E-value=99 Score=29.68 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHH
Q psy10052 53 LLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALG 96 (500)
Q Consensus 53 ~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~ 96 (500)
..++.++-+|++. +.. ++.|...+.| ++.+|..|.++++
T Consensus 298 ~~~rn~~~~~~n~-~~~-~~~l~~~~~~---~~~~r~~a~wa~~ 336 (337)
T COG1600 298 RWQRNALIALGNA-DAT-LPALEALAGD---SPLIREHAAWALS 336 (337)
T ss_pred hHHHHHHHHhhcc-ccc-hhhHHHhhcc---CchhHHHHHHHhc
Confidence 3444555556655 444 5556655552 3666666666654
No 301
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=23.81 E-value=92 Score=29.88 Aligned_cols=41 Identities=29% Similarity=0.303 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHhhcCCCHhHHHHHHHHHH
Q psy10052 384 EPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALK 427 (500)
Q Consensus 384 ~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 427 (500)
....+..++.+|++. +.. ++.|...+.| ++.+|..|.|+++
T Consensus 296 ~~~~~rn~~~~~~n~-~~~-~~~l~~~~~~-~~~~r~~a~wa~~ 336 (337)
T COG1600 296 KKRWQRNALIALGNA-DAT-LPALEALAGD-SPLIREHAAWALS 336 (337)
T ss_pred chhHHHHHHHHhhcc-ccc-hhhHHHhhcc-CchhHHHHHHHhc
Confidence 356677778888877 555 7777777776 8888888888775
No 302
>KOG4646|consensus
Probab=23.57 E-value=3e+02 Score=22.66 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=37.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhccCCCc-c---------HHHHHHHhhcCCCCHHHHHHHHHHHhhc
Q psy10052 338 TAIQCISEAFADKSALLKHELAYCLGQMKDSD-A---------NDILRQVLEDKSQEPMVRHEAAEALGAI 398 (500)
Q Consensus 338 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~-~---------~~~L~~~l~~~~~~~~vR~~a~~aL~~~ 398 (500)
++++.++..+..++..+....+.+|.+++... . ++.++.++.++ ...+-..|+.+|..+
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l 126 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSP--PEITVHSAALFLQLL 126 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCC--hHHHHHHHHHHHHHh
Confidence 45777788888888888888888888877543 2 33444445444 344444455555443
No 303
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=6.3e+02 Score=23.83 Aligned_cols=126 Identities=16% Similarity=0.074 Sum_probs=71.2
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCH---hHHH-HHHHHHhccCCCCcHHHHHHHhhccC
Q psy10052 160 INKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSS---LYRH-EIAFVLGQMQNPSSIPALTSALEDQT 235 (500)
Q Consensus 160 ~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~---~vr~-~a~~aL~~~~~~~~i~~L~~~l~~~~ 235 (500)
.+.+...+.-...+......-+.++...+..+....++..+..... .++. .-+..+.+.....-...+...+....
T Consensus 154 ~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadP 233 (304)
T COG3118 154 APLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADP 233 (304)
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 3444444422222233555566677777776666777766543221 1221 12445555554444555665554333
Q ss_pred CCHHHHHHHHHHHhhcCCc-hHHHHHHHhhcC----CcHHHHHHHHHHhhhcccc
Q psy10052 236 QNEMVRHECAEALGAIATP-ECYDVLRKYLSD----EKVVVRQSCEIALDMCDYE 285 (500)
Q Consensus 236 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~al~~l~~~ 285 (500)
.|...+..++..+...++. .+++.|..+++. .+..+|+.-+..+..++..
T Consensus 234 dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 234 DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 4778888888888777765 467777776653 3677888777666655433
No 304
>KOG2759|consensus
Probab=23.29 E-value=7.5e+02 Score=24.61 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=44.0
Q ss_pred ccHHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHH
Q psy10052 401 KSSISILEKYAQD-PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYK 479 (500)
Q Consensus 401 ~~~~~~L~~~l~d-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~ 479 (500)
-+.+..|.++++. .||.+-..|+.=+++.-...+....-. ..-..-..+.+++. ++|..||+.
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv--------------~k~ggKe~vM~Lln--h~d~~Vry~ 428 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVV--------------EKYGGKERVMNLLN--HEDPEVRYH 428 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHH--------------HHhchHHHHHHHhc--CCCchHHHH
Confidence 4678888888854 568888888888887654332211100 01122234555564 555569999
Q ss_pred HHHHhHhc
Q psy10052 480 AMFKLRDI 487 (500)
Q Consensus 480 a~~al~~~ 487 (500)
|..|..++
T Consensus 429 ALlavQ~l 436 (442)
T KOG2759|consen 429 ALLAVQKL 436 (442)
T ss_pred HHHHHHHH
Confidence 99998775
No 305
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.17 E-value=4.8e+02 Score=22.39 Aligned_cols=120 Identities=17% Similarity=0.105 Sum_probs=69.8
Q ss_pred HHHHHhhcCCC-CCHHHHHHHHHHHHhc-CCcchHHHHHHHcc-CCCHHHHH-HHHHHHHccCC-CccHHHHHHHhhccC
Q psy10052 8 LLIGQVLKDSS-KPLKERFRALFTLKNI-GGKTAIQCISEAFA-DESALLKH-ELAYCLGQMKD-SDANDILRQVLEDKS 82 (500)
Q Consensus 8 ~~L~~~L~~~~-~~~~~R~~A~~~L~~~-~~~~~~~~L~~~l~-~~~~~vR~-~a~~~L~~~~~-~~~~~~L~~~L~~~~ 82 (500)
..|...|-+.+ . ..+..++..+... ......+.+...+. -+++.+-- -+...++.... ....+.+.+-..++
T Consensus 41 ~~l~~~l~~e~~~--~~~~lal~~~~~~~~~~~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~w~~s~- 117 (197)
T cd06561 41 HELAEALWHEEIR--EAQYLALDLLDKKELKEEDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPELDLLEEWAKSE- 117 (197)
T ss_pred HHHHHHHHccHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcchHHHHHHHhCC-
Confidence 34444444443 3 2666666666642 12234445555554 34444433 23444444321 22225667777777
Q ss_pred CCHHHHHHHHHHHHhcCC-----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 83 QEPMVRHEAAEALGAIGD-----KSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 83 ~d~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
+..+|+.+.-.+..... ...++.+..++.|++..|+.+..++|..++.
T Consensus 118 -~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~ 170 (197)
T cd06561 118 -NEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK 170 (197)
T ss_pred -cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 78999988887765322 1334445556678899999999999999875
No 306
>KOG1991|consensus
Probab=23.08 E-value=1.1e+03 Score=26.42 Aligned_cols=88 Identities=18% Similarity=0.060 Sum_probs=59.8
Q ss_pred HHHHHc---cCCCHHHHHHHHHHHHcc-CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC---Ch-------------
Q psy10052 42 CISEAF---ADESALLKHELAYCLGQM-KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG---DK------------- 101 (500)
Q Consensus 42 ~L~~~l---~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~---~~------------- 101 (500)
.+.+++ -|++|..|..|=..|.++ +.+..+..|.+.+.+.+.+-.||..|+..+.+.- ++
T Consensus 5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e 84 (1010)
T KOG1991|consen 5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPE 84 (1010)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCCh
Confidence 444444 377899999999999987 4577889999988887656678999998887631 10
Q ss_pred ----hhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 102 ----SSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 102 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
-..+.++..+-.....+|.+--..+..|
T Consensus 85 ~dk~~irenIl~~iv~~p~~iRvql~~~l~~I 116 (1010)
T KOG1991|consen 85 EDKAVIRENILETIVQVPELIRVQLTACLNTI 116 (1010)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 1234455555445566666666666444
No 307
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.94 E-value=2.3e+02 Score=28.87 Aligned_cols=66 Identities=23% Similarity=0.170 Sum_probs=48.8
Q ss_pred HHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhc
Q psy10052 182 FKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAI 251 (500)
Q Consensus 182 ~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~ 251 (500)
..|..++.+..++.|++.+.-+.+..+...+.+|.. ...++.|+.+|. ++.++.++..|+..|..+
T Consensus 25 ~llkHI~~~~ImDlLLklIs~d~~~~~~~ilewL~~---q~LI~~Li~~L~-p~~~~~~q~naa~~L~aI 90 (475)
T PF04499_consen 25 NLLKHIDTPAIMDLLLKLISTDKPESPTGILEWLAE---QNLIPRLIDLLS-PSYSSDVQSNAADFLKAI 90 (475)
T ss_pred HHHHhcCCcHHHHHHHHHHccCcccchHHHHHHHHH---hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHH
Confidence 345666777778888888876667777777776644 678999999997 456788888888777543
No 308
>KOG2137|consensus
Probab=22.88 E-value=3e+02 Score=29.19 Aligned_cols=92 Identities=7% Similarity=0.061 Sum_probs=61.7
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC--------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-------h
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-------S 102 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-------~ 102 (500)
..++.|...+++.+..++..++..+....+ ...+|.|..+..... +..|+..++-+++.+-+. +
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~q~lD~~~v~d 467 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLIQRLDKAAVLD 467 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467777788889999999999888876532 223455544433332 688999999988876431 3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 103 SISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 103 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
.+..+.++.+..||.+-........++.
T Consensus 468 ~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 468 ELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 3455666677888888777666665543
No 309
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=6.7e+02 Score=23.68 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=65.3
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHH---HHHHH-HHHHHHhchhccchhhccccCc
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKE---VSETC-YLALKRIQFVTEEDKQKDTGNI 144 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~---vr~~a-~~aL~~~~~~~~~~~~~~~~~~ 144 (500)
++.+.+...+.-.++...+...-++++-..+..+....++..+-..... ++..+ +.-+.+...
T Consensus 152 ~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~------------- 218 (304)
T COG3118 152 EAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA------------- 218 (304)
T ss_pred hHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc-------------
Confidence 4455566666554334566777777777777766566666665322221 22112 233333322
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh-hhHHHHHhhcc----CCCHhHHHHHHHHHhccC
Q psy10052 145 YGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV-ESTLALTEGLS----HGSSLYRHEIAFVLGQMQ 219 (500)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~-~~i~~l~~~L~----~~~~~vr~~a~~aL~~~~ 219 (500)
......+...+...-.|...|......+...+.. .+++.|+..++ ..+..+|+..+..+.-++
T Consensus 219 ------------~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 ------------TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred ------------CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 1234555555532223445566555555444443 45666666553 245667777776666665
No 310
>KOG0904|consensus
Probab=21.73 E-value=1e+03 Score=26.30 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=42.3
Q ss_pred HHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHH---HhcCC----CHHHHHHHHHHHHH
Q psy10052 62 LGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEK---YAQDP----VKEVSETCYLALKR 128 (500)
Q Consensus 62 L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~---~l~d~----~~~vr~~a~~aL~~ 128 (500)
|...... .+..-+++|.-.-.|+.||..|++.|..+.+.+....|++ .++.+ ..-+|.-.-.||++
T Consensus 603 L~~Wp~l-~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N 675 (1076)
T KOG0904|consen 603 LKDWPPL-SVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRN 675 (1076)
T ss_pred HhhCCCC-CHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhc
Confidence 3444333 3444556666543489999999999988888766555444 45443 34567777777764
No 311
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=21.29 E-value=3.5e+02 Score=20.89 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=14.6
Q ss_pred HHHHHHHc--cCCCHHHHHHHHHHHHcc
Q psy10052 40 IQCISEAF--ADESALLKHELAYCLGQM 65 (500)
Q Consensus 40 ~~~L~~~l--~~~~~~vR~~a~~~L~~~ 65 (500)
++.++..- .+.+|.+|..|++++..+
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL 57 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNL 57 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 44555443 344566666666666655
No 312
>KOG2199|consensus
Probab=20.88 E-value=7.6e+02 Score=24.30 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHccC--CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC------------ChhhHHHHHHHhc-C
Q psy10052 49 DESALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG------------DKSSISILEKYAQ-D 113 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~~--~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~-d 113 (500)
.++|.+-..++.-++.-. ..+++..|.+-|.+. |+.|...|+..|+.+- ..++...|..++. .
T Consensus 23 ~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~ 100 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESK 100 (462)
T ss_pred cccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhc
Confidence 446777666776666553 345677777777777 7778777777766532 2345666777776 5
Q ss_pred CCHHHHHHHHHHHHHhch
Q psy10052 114 PVKEVSETCYLALKRIQF 131 (500)
Q Consensus 114 ~~~~vr~~a~~aL~~~~~ 131 (500)
.++.|+......+....+
T Consensus 101 ~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 101 AHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 567777766666655443
No 313
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.35 E-value=3e+02 Score=28.12 Aligned_cols=82 Identities=16% Similarity=0.104 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHH
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPM 86 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~ 86 (500)
..+++.++++... .--..|..++.+...+.|++++.-+.+..+...+..|.. ...++.|+..|..+. ++.
T Consensus 9 ~~e~l~Fik~~~~------~v~~llkHI~~~~ImDlLLklIs~d~~~~~~~ilewL~~---q~LI~~Li~~L~p~~-~~~ 78 (475)
T PF04499_consen 9 TEEMLEFIKSQPN------FVDNLLKHIDTPAIMDLLLKLISTDKPESPTGILEWLAE---QNLIPRLIDLLSPSY-SSD 78 (475)
T ss_pred HHHHHHHHHhCcc------HHHHHHHhcCCcHHHHHHHHHHccCcccchHHHHHHHHH---hCHHHHHHHHhCCCC-CHH
Confidence 3455555654322 123445666777777788888875556677777777765 457888888887443 677
Q ss_pred HHHHHHHHHHhc
Q psy10052 87 VRHEAAEALGAI 98 (500)
Q Consensus 87 vr~~a~~aL~~~ 98 (500)
+...|++.|..+
T Consensus 79 ~q~naa~~L~aI 90 (475)
T PF04499_consen 79 VQSNAADFLKAI 90 (475)
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
Done!