Query psy10052
Match_columns 500
No_of_seqs 269 out of 2240
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 16:41:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 99.9 2E-25 6.8E-30 232.2 29.6 422 8-488 90-586 (588)
2 1oyz_A Hypothetical protein YI 99.9 3.3E-25 1.1E-29 208.2 23.9 243 4-281 22-279 (280)
3 1b3u_A Protein (protein phosph 99.9 1.2E-24 3.9E-29 226.5 28.2 390 5-432 10-471 (588)
4 1oyz_A Hypothetical protein YI 99.9 1.2E-24 3.9E-29 204.5 25.3 158 39-252 24-187 (280)
5 2z6g_A B-catenin; FULL-length, 99.9 3E-23 1E-27 221.2 29.3 438 5-488 115-662 (780)
6 3ltm_A Alpha-REP4; protein eng 99.9 1.3E-22 4.3E-27 182.1 21.5 190 32-252 13-202 (211)
7 1jdh_A Beta-catenin; beta-cate 99.9 8.8E-22 3E-26 202.1 29.2 404 38-487 17-528 (529)
8 1jdh_A Beta-catenin; beta-cate 99.9 4.5E-21 1.5E-25 196.8 33.4 398 3-429 15-528 (529)
9 3ltm_A Alpha-REP4; protein eng 99.9 5.6E-22 1.9E-26 177.9 21.1 189 2-221 16-204 (211)
10 3ltj_A Alpharep-4; protein eng 99.9 9.2E-22 3.1E-26 175.0 21.1 184 38-252 14-197 (201)
11 3now_A UNC-45 protein, SD10334 99.9 5.1E-20 1.7E-24 192.0 35.8 426 22-487 219-780 (810)
12 2z6h_A Catenin beta-1, beta-ca 99.9 2.5E-20 8.7E-25 195.5 33.6 408 38-489 14-527 (644)
13 3ltj_A Alpharep-4; protein eng 99.9 1.9E-21 6.6E-26 172.9 21.1 186 3-219 12-197 (201)
14 2vgl_B AP-2 complex subunit be 99.9 1.5E-19 5.1E-24 187.2 36.7 422 7-488 51-531 (591)
15 2z6g_A B-catenin; FULL-length, 99.9 7.9E-21 2.7E-25 202.6 27.8 401 4-433 149-665 (780)
16 2z6h_A Catenin beta-1, beta-ca 99.9 4.2E-20 1.4E-24 193.9 31.7 402 3-433 12-529 (644)
17 3now_A UNC-45 protein, SD10334 99.9 2.4E-18 8.2E-23 179.4 41.5 442 7-498 150-748 (810)
18 2jdq_A Importin alpha-1 subuni 99.9 1.7E-19 5.7E-24 181.2 30.6 330 40-430 22-442 (450)
19 2vgl_B AP-2 complex subunit be 99.9 1.2E-19 4.3E-24 187.8 28.7 420 4-489 12-493 (591)
20 4b8j_A Importin subunit alpha- 99.9 3.6E-19 1.2E-23 182.5 31.4 333 38-431 74-496 (528)
21 1wa5_B Importin alpha subunit; 99.9 8.2E-19 2.8E-23 179.9 33.9 332 38-431 87-510 (530)
22 2jdq_A Importin alpha-1 subuni 99.8 5.3E-19 1.8E-23 177.5 28.6 256 7-284 22-347 (450)
23 1wa5_B Importin alpha subunit; 99.8 1.8E-18 6E-23 177.4 31.2 329 5-399 87-509 (530)
24 4fdd_A Transportin-1; heat rep 99.8 8.7E-18 3E-22 182.2 33.9 432 6-493 175-748 (852)
25 4b8j_A Importin subunit alpha- 99.8 1.5E-17 5.1E-22 170.5 32.5 363 68-488 73-495 (528)
26 4fdd_A Transportin-1; heat rep 99.8 1.9E-17 6.6E-22 179.5 34.3 416 5-487 10-510 (852)
27 3ul1_B Importin subunit alpha- 99.8 2.2E-17 7.5E-22 167.9 31.0 331 39-429 58-476 (510)
28 1w63_A Adapter-related protein 99.8 5.1E-18 1.7E-22 176.3 26.3 386 6-431 108-577 (618)
29 3tpo_A Importin subunit alpha- 99.8 1.1E-16 3.9E-21 163.6 29.9 332 38-429 76-495 (529)
30 1w63_A Adapter-related protein 99.8 1.5E-15 5.2E-20 157.7 36.8 422 6-488 35-576 (618)
31 4ady_A RPN2, 26S proteasome re 99.8 1.1E-15 3.6E-20 159.6 34.7 316 85-487 372-717 (963)
32 4ady_A RPN2, 26S proteasome re 99.8 2.5E-15 8.5E-20 156.8 35.8 278 175-492 373-681 (963)
33 3ul1_B Importin subunit alpha- 99.8 2.1E-16 7E-21 160.8 25.7 257 5-284 57-387 (510)
34 2bpt_A Importin beta-1 subunit 99.7 2.7E-15 9.2E-20 163.0 35.6 423 4-488 3-528 (861)
35 1u6g_C TIP120 protein, CAND1; 99.7 2.5E-16 8.5E-21 177.4 27.0 442 4-487 5-596 (1230)
36 1u6g_C TIP120 protein, CAND1; 99.7 9.6E-16 3.3E-20 172.6 27.3 439 5-488 48-636 (1230)
37 2bpt_A Importin beta-1 subunit 99.7 2.8E-15 9.5E-20 162.9 28.9 451 5-487 134-709 (861)
38 3tpo_A Importin subunit alpha- 99.7 8.8E-15 3E-19 149.6 29.8 350 102-487 76-495 (529)
39 1qgr_A Protein (importin beta 99.7 1E-13 3.4E-18 150.9 32.6 433 7-487 3-535 (876)
40 1qgr_A Protein (importin beta 99.7 1.4E-13 4.8E-18 149.7 33.5 461 5-488 128-721 (876)
41 1ibr_B P95, importin beta-1 su 99.6 1.1E-13 3.7E-18 139.1 26.1 225 7-252 3-287 (462)
42 1ibr_B P95, importin beta-1 su 99.6 7.7E-14 2.6E-18 140.2 24.9 342 41-433 4-439 (462)
43 1te4_A Conserved protein MTH18 99.6 2.7E-16 9.1E-21 129.0 5.2 122 3-129 10-131 (131)
44 3l6x_A Catenin delta-1; cateni 99.6 4.8E-12 1.7E-16 127.8 32.5 321 37-431 47-476 (584)
45 3l6x_A Catenin delta-1; cateni 99.6 3.2E-12 1.1E-16 129.1 30.1 345 3-409 46-486 (584)
46 2vgl_A Adaptor protein complex 99.6 1.8E-12 6.1E-17 134.2 28.0 390 6-431 112-589 (621)
47 1xm9_A Plakophilin 1; armadill 99.5 3.2E-12 1.1E-16 127.8 27.4 196 70-284 45-360 (457)
48 1xm9_A Plakophilin 1; armadill 99.5 1.2E-11 4.3E-16 123.6 30.6 135 337-488 282-448 (457)
49 2vgl_A Adaptor protein complex 99.5 5.2E-10 1.8E-14 115.8 43.4 328 5-366 35-432 (621)
50 4hxt_A De novo protein OR329; 99.5 2.4E-12 8.3E-17 118.0 22.7 207 39-285 3-242 (252)
51 4hxt_A De novo protein OR329; 99.5 4.1E-12 1.4E-16 116.4 23.3 167 222-433 44-243 (252)
52 1te4_A Conserved protein MTH18 99.5 1.3E-14 4.3E-19 118.9 4.4 122 36-187 10-131 (131)
53 4db8_A Armadillo-repeat protei 99.5 3E-12 1E-16 117.5 20.1 195 38-283 12-250 (252)
54 4db8_A Armadillo-repeat protei 99.5 4.8E-12 1.6E-16 116.1 19.6 207 157-430 11-250 (252)
55 3nmz_A APC variant protein; pr 99.4 2.6E-11 8.8E-16 119.7 25.2 200 222-432 189-451 (458)
56 3nmz_A APC variant protein; pr 99.4 2.5E-11 8.4E-16 119.8 24.7 315 5-399 32-449 (458)
57 1lrv_A LRV, leucine-rich repea 99.4 7.3E-14 2.5E-18 125.4 1.4 186 12-280 57-242 (244)
58 4db6_A Armadillo repeat protei 99.3 7.9E-11 2.7E-15 104.7 18.3 92 37-130 11-124 (210)
59 4db6_A Armadillo repeat protei 99.3 1.1E-10 3.7E-15 103.8 18.3 164 222-430 12-208 (210)
60 1lrv_A LRV, leucine-rich repea 99.3 1E-12 3.4E-17 118.0 2.4 183 170-427 60-242 (244)
61 3opb_A SWI5-dependent HO expre 99.3 8.8E-08 3E-12 98.5 38.4 437 7-488 170-727 (778)
62 3opb_A SWI5-dependent HO expre 99.2 4E-08 1.4E-12 101.0 32.1 365 37-431 254-728 (778)
63 3nmw_A APC variant protein; AR 99.1 4.3E-09 1.5E-13 100.7 20.3 239 53-366 47-333 (354)
64 3nmw_A APC variant protein; AR 99.1 6.2E-09 2.1E-13 99.5 18.5 201 222-433 73-336 (354)
65 3tjz_B Coatomer subunit gamma; 98.9 2.8E-08 9.6E-13 93.9 16.4 258 39-336 69-353 (355)
66 3tjz_B Coatomer subunit gamma; 98.9 5.5E-08 1.9E-12 91.9 18.2 241 11-280 74-349 (355)
67 1xqr_A HSPBP1 protein; armadil 98.9 2.1E-08 7.2E-13 93.2 14.2 133 338-487 81-236 (296)
68 1xqr_A HSPBP1 protein; armadil 98.9 3.5E-08 1.2E-12 91.7 14.3 124 7-131 30-196 (296)
69 2qk2_A LP04448P; mini spindles 98.7 1.1E-07 3.9E-12 86.2 13.7 165 42-252 19-204 (242)
70 2qk2_A LP04448P; mini spindles 98.7 3.9E-07 1.3E-11 82.6 15.7 161 72-284 18-205 (242)
71 2db0_A 253AA long hypothetical 98.6 1.1E-05 3.8E-10 66.5 19.3 195 189-432 30-247 (253)
72 2db0_A 253AA long hypothetical 98.4 1.2E-05 4.3E-10 66.2 16.1 192 36-251 30-244 (253)
73 2qk1_A Protein STU2; STU2P, XM 98.4 1E-05 3.4E-10 73.3 16.1 125 43-186 21-172 (249)
74 2qk1_A Protein STU2; STU2P, XM 98.4 2.3E-05 7.8E-10 71.0 17.5 170 73-262 20-233 (249)
75 3tt9_A Plakophilin-2; cell adh 98.3 1.4E-05 4.8E-10 71.0 13.5 135 339-487 53-227 (233)
76 3tt9_A Plakophilin-2; cell adh 98.2 8E-06 2.7E-10 72.6 11.6 127 4-131 7-180 (233)
77 2x19_B Importin-13; nuclear tr 98.2 0.0044 1.5E-07 67.8 36.1 447 7-487 26-597 (963)
78 1wa5_C Importin alpha RE-expor 98.2 0.00054 1.8E-08 74.9 28.3 125 1-131 1-152 (960)
79 3b2a_A TON_1937, putative unch 98.2 0.00019 6.5E-09 61.9 19.0 189 224-431 9-218 (265)
80 3b2a_A TON_1937, putative unch 98.2 4.7E-05 1.6E-09 65.6 14.8 182 6-219 8-217 (265)
81 1lsh_A Lipovitellin (LV-1N, LV 98.1 0.00037 1.3E-08 76.4 24.6 238 189-435 324-580 (1056)
82 2x1g_F Cadmus; transport prote 98.1 0.00049 1.7E-08 75.4 23.7 445 7-487 9-613 (971)
83 3l9t_A Putative uncharacterize 98.0 0.00017 5.8E-09 62.8 15.5 148 330-498 63-218 (240)
84 1wa5_C Importin alpha RE-expor 98.0 0.0036 1.2E-07 68.4 28.0 120 46-187 13-150 (960)
85 3l9t_A Putative uncharacterize 97.8 0.00074 2.5E-08 58.8 15.1 146 49-219 51-206 (240)
86 1lsh_A Lipovitellin (LV-1N, LV 97.8 0.0057 1.9E-07 67.0 25.6 232 38-286 326-578 (1056)
87 3grl_A General vesicular trans 97.7 0.06 2.1E-06 54.3 34.2 122 4-130 20-150 (651)
88 3grl_A General vesicular trans 97.7 0.032 1.1E-06 56.2 26.4 66 66-133 119-197 (651)
89 3m1i_C Exportin-1; heat repeat 97.7 0.0046 1.6E-07 68.2 22.7 408 6-433 17-571 (1049)
90 2iw3_A Elongation factor 3A; a 97.6 0.0022 7.7E-08 68.4 17.5 187 39-249 96-320 (986)
91 3ibv_A Exportin-T; karyopherin 97.5 0.094 3.2E-06 57.0 29.9 114 16-129 17-156 (980)
92 2iw3_A Elongation factor 3A; a 97.5 0.014 4.8E-07 62.4 22.5 184 70-280 55-276 (986)
93 3oc3_A Helicase MOT1, MOT1; re 97.5 0.0069 2.4E-07 59.3 17.7 215 8-249 177-432 (800)
94 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0035 1.2E-07 61.3 15.0 46 237-282 276-326 (800)
95 2x19_B Importin-13; nuclear tr 97.3 0.1 3.5E-06 56.9 27.7 190 40-252 26-267 (963)
96 2x1g_F Cadmus; transport prote 97.3 0.059 2E-06 58.9 25.4 89 42-131 11-114 (971)
97 4hat_C Exportin-1; heat repeat 97.1 0.46 1.6E-05 51.8 33.3 201 5-219 16-262 (1023)
98 4ffb_C Protein STU2; tubulin f 97.0 0.0067 2.3E-07 55.7 12.1 85 43-129 14-130 (278)
99 3m1i_C Exportin-1; heat repeat 96.9 0.22 7.6E-06 54.8 25.5 89 41-130 19-128 (1049)
100 2of3_A ZYG-9; multifunctional 96.9 0.021 7E-07 51.3 14.0 93 339-433 133-238 (266)
101 4ffb_C Protein STU2; tubulin f 96.6 0.026 9E-07 51.6 13.2 164 260-431 14-212 (278)
102 2of3_A ZYG-9; multifunctional 96.0 0.023 7.8E-07 51.1 8.6 90 38-129 132-234 (266)
103 2b6c_A Hypothetical protein EF 94.9 0.37 1.3E-05 42.1 12.4 132 341-496 58-197 (220)
104 3ibv_A Exportin-T; karyopherin 93.6 9.7 0.00033 41.3 25.2 85 350-434 455-569 (980)
105 3jxy_A Alkylpurine DNA glycosy 93.3 0.78 2.7E-05 40.4 11.2 107 23-131 77-195 (232)
106 2b6c_A Hypothetical protein EF 92.5 1.7 5.8E-05 37.8 12.1 121 8-132 58-189 (220)
107 4gmo_A Putative uncharacterize 92.3 0.46 1.6E-05 49.4 9.5 126 6-133 35-216 (684)
108 4hat_C Exportin-1; heat repeat 91.4 0.54 1.8E-05 51.3 9.2 105 26-132 435-570 (1023)
109 3jxy_A Alkylpurine DNA glycosy 90.7 8 0.00027 33.8 18.3 166 29-220 11-195 (232)
110 3gs3_A Symplekin, LD45768P; he 90.5 1.7 5.7E-05 38.7 9.9 59 69-129 53-117 (257)
111 3o2t_A Symplekin; heat repeat, 90.3 2.9 0.0001 39.5 11.9 60 68-129 62-127 (386)
112 3u0r_A Apoptosis inhibitor 5; 88.3 7.7 0.00026 37.5 13.2 104 322-427 43-159 (507)
113 3u0r_A Apoptosis inhibitor 5; 87.9 3 0.0001 40.3 10.1 78 49-128 39-126 (507)
114 4gmo_A Putative uncharacterize 86.9 0.7 2.4E-05 48.1 5.7 57 74-132 39-106 (684)
115 3a6p_A Exportin-5; exportin-5, 85.4 21 0.00073 39.7 16.9 124 7-131 13-162 (1204)
116 3gjx_A Exportin-1; transport, 84.3 11 0.00037 41.2 13.5 124 5-131 28-178 (1073)
117 3gjx_A Exportin-1; transport, 83.0 37 0.0013 37.0 17.0 92 38-130 28-140 (1073)
118 3ut4_A CTHE_2751, putative unc 82.8 4.9 0.00017 31.4 7.3 101 27-130 17-129 (134)
119 3ut4_A CTHE_2751, putative unc 78.2 14 0.00049 28.8 8.6 92 5-99 31-129 (134)
120 3dad_A FH1/FH2 domain-containi 70.6 25 0.00084 32.4 9.5 120 4-127 117-282 (339)
121 4atg_A TAF6; transcription, TF 66.8 12 0.00041 31.5 6.2 64 417-496 105-168 (196)
122 3o2t_A Symplekin; heat repeat, 66.6 36 0.0012 32.1 10.1 88 6-98 27-127 (386)
123 3gs3_A Symplekin, LD45768P; he 64.5 61 0.0021 28.6 10.7 105 23-129 31-171 (257)
124 1t06_A Hypothetical protein; s 63.5 74 0.0025 27.6 11.9 117 9-132 52-181 (235)
125 1t06_A Hypothetical protein; s 62.6 77 0.0026 27.4 12.9 133 341-496 51-189 (235)
126 2i9c_A Hypothetical protein RP 62.4 5.2 0.00018 30.7 2.8 61 370-432 58-118 (123)
127 1x5b_A Signal transducing adap 59.6 50 0.0017 26.8 8.6 30 101-130 94-124 (163)
128 3zyq_A Hepatocyte growth facto 59.1 54 0.0018 28.3 9.3 25 38-62 45-69 (226)
129 3a6p_A Exportin-5; exportin-5, 56.7 2.4E+02 0.0082 31.2 21.2 48 115-186 26-73 (1204)
130 3ldz_A STAM-1, signal transduc 56.3 66 0.0022 25.3 8.6 80 49-130 20-113 (140)
131 3dad_A FH1/FH2 domain-containi 54.9 1.3E+02 0.0044 27.6 19.1 90 39-130 119-230 (339)
132 4atg_A TAF6; transcription, TF 52.5 1E+02 0.0035 25.8 12.2 137 40-195 13-167 (196)
133 3ls8_A Phosphatidylinositol 3- 51.6 21 0.00073 35.9 6.0 78 37-115 62-142 (614)
134 2i9c_A Hypothetical protein RP 50.7 21 0.00071 27.4 4.4 59 70-130 58-116 (123)
135 3b34_A Aminopeptidase N; prote 48.9 2.7E+02 0.0093 29.6 23.7 91 177-267 702-793 (891)
136 1x5b_A Signal transducing adap 48.8 1.1E+02 0.0036 24.8 9.5 93 4-97 13-122 (163)
137 1z5h_A Tricorn protease intera 47.3 2.7E+02 0.0092 29.1 16.5 86 175-264 587-675 (780)
138 1ho8_A Vacuolar ATP synthase s 47.1 20 0.00068 34.8 4.8 62 69-130 395-475 (480)
139 3ldz_A STAM-1, signal transduc 46.1 1.1E+02 0.0036 24.0 8.6 82 349-432 20-115 (140)
140 2x6h_A GH13170P, VPS34, phosph 45.7 45 0.0015 34.2 7.4 78 37-115 76-156 (696)
141 1mhq_A ADP-ribosylation factor 44.3 1.1E+02 0.0037 24.3 8.1 31 100-130 79-115 (148)
142 1dvp_A HRS, hepatocyte growth 43.2 63 0.0021 27.7 7.1 27 38-64 42-68 (220)
143 1vsy_5 Proteasome activator BL 43.1 1.1E+02 0.0037 33.1 10.2 126 4-131 796-966 (997)
144 1l5j_A Aconitate hydratase 2; 41.5 1.4E+02 0.0046 31.4 10.1 123 3-132 23-156 (865)
145 3g2s_A C-terminal fragment of 41.4 1.3E+02 0.0045 23.8 9.3 80 49-130 26-125 (149)
146 3zyq_A Hepatocyte growth facto 41.1 1.4E+02 0.0048 25.6 9.0 81 48-130 22-117 (226)
147 3ls8_A Phosphatidylinositol 3- 38.7 43 0.0015 33.8 5.9 76 336-412 61-139 (614)
148 2x6h_A GH13170P, VPS34, phosph 36.9 76 0.0026 32.6 7.4 77 337-414 76-155 (696)
149 3g2s_A C-terminal fragment of 34.7 1.7E+02 0.0058 23.2 9.6 81 349-431 26-126 (149)
150 2wxf_A Phosphatidylinositol-4, 33.4 1.8E+02 0.006 31.2 9.8 91 37-128 439-536 (940)
151 1vsy_5 Proteasome activator BL 33.2 1.3E+02 0.0043 32.6 8.8 112 318-431 813-966 (997)
152 1mhq_A ADP-ribosylation factor 32.7 1.8E+02 0.0062 22.9 8.8 81 349-431 16-116 (148)
153 1juq_A ADP-ribosylation factor 31.3 2.1E+02 0.0072 23.2 9.7 79 50-130 29-127 (171)
154 1juq_A ADP-ribosylation factor 30.1 2.2E+02 0.0076 23.1 10.3 103 370-486 13-125 (171)
155 1e7u_A Phosphatidylinositol 3- 29.0 2.5E+02 0.0085 30.1 10.0 92 36-127 444-546 (961)
156 3hhm_A Phosphatidylinositol-4, 26.9 1.3E+02 0.0044 32.7 7.4 78 36-114 584-665 (1091)
157 1z5h_A Tricorn protease intera 23.8 6.3E+02 0.022 26.2 15.2 76 205-283 586-663 (780)
158 4fke_A Aminopeptidase N; zinc 21.8 2.2E+02 0.0075 30.4 8.2 91 23-114 688-787 (909)
159 1dvp_A HRS, hepatocyte growth 21.7 3.6E+02 0.012 22.7 10.0 60 370-431 43-115 (220)
160 3rjo_A Endoplasmic reticulum a 20.0 2.6E+02 0.0089 26.4 7.7 86 23-111 199-293 (419)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.94 E-value=2e-25 Score=232.24 Aligned_cols=422 Identities=14% Similarity=0.155 Sum_probs=288.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCc--------chHHHHHHHccCCCHHHHHHHHHHHHccCC-------CccHH
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIGGK--------TAIQCISEAFADESALLKHELAYCLGQMKD-------SDAND 72 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~--------~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-------~~~~~ 72 (500)
+.|...+.+++. .+|..|...|+++... ..++.+.++..++++.+|..++..++.+.. ...++
T Consensus 90 ~~L~~l~~~~~~--~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~ 167 (588)
T 1b3u_A 90 PPLESLATVEET--VVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQ 167 (588)
T ss_dssp HHHHHHTTSSCH--HHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhCchH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 334444455554 3777777777776531 123444444456677777777777776532 13355
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCC--------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCc
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNI 144 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~ 144 (500)
.+..+++|+ ++.||..++++|+.+.. +..+|.|..+++|+++.||..|+.+|+.+.........
T Consensus 168 ~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~------ 239 (588)
T 1b3u_A 168 YFRNLCSDD--TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL------ 239 (588)
T ss_dssp HHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH------
T ss_pred HHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHH------
Confidence 556666776 78888888888887631 24567777777888888888888888877643211000
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC--------hhhHHHHHhhccCCCHhHHHHHHHHHh
Q psy10052 145 YGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS--------VESTLALTEGLSHGSSLYRHEIAFVLG 216 (500)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~--------~~~i~~l~~~L~~~~~~vr~~a~~aL~ 216 (500)
.+..++.+...+.| .++.+|..++.+++.+.. ...++.+...++|+++.||..++.+++
T Consensus 240 -----------~~~~~~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 240 -----------EALVMPTLRQAAED--KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306 (588)
T ss_dssp -----------HHHTHHHHHHHHTC--SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 01235556666643 456788888888776543 245677788888888888888888887
Q ss_pred ccCC------------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC--------chHHHHHHHhhcCCcHHHHHHHH
Q psy10052 217 QMQN------------PSSIPALTSALEDQTQNEMVRHECAEALGAIAT--------PECYDVLRKYLSDEKVVVRQSCE 276 (500)
Q Consensus 217 ~~~~------------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~ 276 (500)
.+.. +..+|.+..++.| .++.||..++.+|+.+.. +..+|.+..+++|+++.||..++
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~ 384 (588)
T 1b3u_A 307 EFCENLSADCRENVIMSQILPCIKELVSD--ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNII 384 (588)
T ss_dssp HHHHTSCTTTHHHHHHHTHHHHHHHHHTC--SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHhChhhhhhHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 6542 2355666677766 468888888888887642 23467777888888888888888
Q ss_pred HHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhc
Q psy10052 277 IALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG--------GKTAIQCISEAFA 348 (500)
Q Consensus 277 ~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~--------~~~~~~~L~~~l~ 348 (500)
.+++.+........ + ....++.+.+.+.+ .+|.+|..++..++.+. .+..++.+..++.
T Consensus 385 ~~l~~l~~~~~~~~-~----------~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 451 (588)
T 1b3u_A 385 SNLDCVNEVIGIRQ-L----------SQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV 451 (588)
T ss_dssp TTCHHHHHHSCHHH-H----------HHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCHHH-H----------HHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 88875543211100 0 02235566666655 44889999999887653 2356788889999
Q ss_pred CCCHHHHHHHHHHHhccCC--------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------ccHHHHHHHhhc
Q psy10052 349 DKSALLKHELAYCLGQMKD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQ 412 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~~--------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~ 412 (500)
|+++.||..++.+++.+.. +..++.|..++.++ ++.+|..++.+++.+.. +..++.|...++
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 529 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG 529 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG
T ss_pred CCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC
Confidence 9999999999999987743 24567777777665 79999999999998753 357788999999
Q ss_pred CCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 413 DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 413 d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
|+++.||..++.+|+.+....+... .....++.|.+++. +.+..+|..|..+++.+.
T Consensus 530 d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 530 DPVANVRFNVAKSLQKIGPILDNST-----------------LQSEVKPILEKLTQ--DQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp CSCHHHHHHHHHHHHHHGGGSCHHH-----------------HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHHHHHhchhh-----------------hHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhh
Confidence 9999999999999999975321100 01256677777554 556679999999999875
No 2
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.94 E-value=3.3e-25 Score=208.17 Aligned_cols=243 Identities=20% Similarity=0.177 Sum_probs=210.1
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCC-CccHHHHHHH-----
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKD-SDANDILRQV----- 77 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-~~~~~~L~~~----- 77 (500)
+.+++.|++.|.+++.. +|..|++.|++++.+..++.|.++|.|+++.+|..|+++|+.++. ...++.++++
T Consensus 22 ~~~i~~L~~~L~~~~~~--vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~ 99 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSL--KRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99 (280)
T ss_dssp TSCHHHHHHHTTCSSHH--HHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHcCCHH--HHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 45789999999998865 999999999999999999999999999999999999999999984 4445554443
Q ss_pred hhccCCCHHHHHHHHHHHHhcC------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCC
Q psy10052 78 LEDKSQEPMVRHEAAEALGAIG------DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPT 151 (500)
Q Consensus 78 L~~~~~d~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (500)
+.|+ ++.||..++++|+.++ .+..++.|..+++|+++.||..|+.+|++++.
T Consensus 100 ~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------------------- 157 (280)
T 1oyz_A 100 LNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------------------- 157 (280)
T ss_dssp HHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------------------
T ss_pred hcCC--CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------------------
Confidence 4556 8999999999999997 45788999999999999999999999999875
Q ss_pred CCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC--ChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHH
Q psy10052 152 PPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN--SVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTS 229 (500)
Q Consensus 152 ~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~--~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~ 229 (500)
+..++.|++.+.| +++.+|..|+.+|+.++ .+.+++.+...++++++.||..++.+|+.++++..++.|..
T Consensus 158 -----~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~ 230 (280)
T 1oyz_A 158 -----KATIPLLINLLKD--PNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCD 230 (280)
T ss_dssp ------CCHHHHHHHHTC--SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred -----HHHHHHHHHHHcC--CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHH
Confidence 3468999999965 45679999999999987 77899999999999999999999999999999999999999
Q ss_pred HhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcC-CcHHHHHHHHHHhhh
Q psy10052 230 ALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSD-EKVVVRQSCEIALDM 281 (500)
Q Consensus 230 ~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-~~~~vr~~a~~al~~ 281 (500)
.+.++ + ||..++.+|+.++.+.+++.|.+++.+ ++..++..++.++..
T Consensus 231 ~l~d~--~--vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 231 ELKKN--T--VYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHTSS--S--CCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HhcCc--c--HHHHHHHHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 99873 2 899999999999999999999999865 467777777777653
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.94 E-value=1.2e-24 Score=226.48 Aligned_cols=390 Identities=14% Similarity=0.122 Sum_probs=269.2
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhc----CCc----chHHHHHHHccCCCHHHHHHHHHHHHccCC--------C
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNI----GGK----TAIQCISEAFADESALLKHELAYCLGQMKD--------S 68 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~----~~~----~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--------~ 68 (500)
..+..|+..|++++.. +|..|.+.|..+ +.. ..++.|.... |+++.+|..++..|+.+.. .
T Consensus 10 ~~i~~l~~~l~s~~~~--~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~ 86 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQ--LRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVH 86 (588)
T ss_dssp HHHHHHHHHTTCSCHH--HHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGG
T ss_pred CcHHHHHHHhhcccHH--HHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 4578899999999875 999999999874 222 3455555544 7889999999999997642 2
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh--------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhcc
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGDK--------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKD 140 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~ 140 (500)
..++.|..++.++ ++.||..|+++|+.+... ..++.+..+.+++++.+|..+...++.+.........
T Consensus 87 ~ll~~L~~l~~~~--~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~-- 162 (588)
T 1b3u_A 87 CLLPPLESLATVE--ETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-- 162 (588)
T ss_dssp GGHHHHHHHTTSS--CHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH--
T ss_pred HHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHH--
Confidence 3456666666776 799999999999997642 2456666777888999999999999887532211000
Q ss_pred ccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC----C----hhhHHHHHhhccCCCHhHHHHHH
Q psy10052 141 TGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN----S----VESTLALTEGLSHGSSLYRHEIA 212 (500)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~----~----~~~i~~l~~~L~~~~~~vr~~a~ 212 (500)
+..++.+...+.| +++.+|..++.+|+.+. . +..++.+..+++|+++.||..++
T Consensus 163 ----------------~~l~~~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~ 224 (588)
T 1b3u_A 163 ----------------AELRQYFRNLCSD--DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAV 224 (588)
T ss_dssp ----------------HHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHH
T ss_pred ----------------HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2345666666654 46779999999998763 2 24678888888999999999999
Q ss_pred HHHhccCC--------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC--------chHHHHHHHhhcCCcHHHHHHHH
Q psy10052 213 FVLGQMQN--------PSSIPALTSALEDQTQNEMVRHECAEALGAIAT--------PECYDVLRKYLSDEKVVVRQSCE 276 (500)
Q Consensus 213 ~aL~~~~~--------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~ 276 (500)
.+++.+.. +..+|.+..++.| .++.+|..++.+|+.+.. ...++.+..+++|+++.||..++
T Consensus 225 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 302 (588)
T 1b3u_A 225 EACVNIAQLLPQEDLEALVMPTLRQAAED--KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302 (588)
T ss_dssp HHHHHHHHHSCHHHHHHHTHHHHHHHHTC--SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHH
Confidence 99887652 2367777777776 568999999999987763 24678888999999999999999
Q ss_pred HHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC--------hhhHHHHHHHhc
Q psy10052 277 IALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG--------KTAIQCISEAFA 348 (500)
Q Consensus 277 ~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~L~~~l~ 348 (500)
.+++.+............. ....++.+..++.+++ +.+|..++.+++.+.. +..++.+...++
T Consensus 303 ~~l~~~~~~~~~~~~~~~~-------~~~l~p~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~ 373 (588)
T 1b3u_A 303 HKVKEFCENLSADCRENVI-------MSQILPCIKELVSDAN--QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK 373 (588)
T ss_dssp HHHHHHHHTSCTTTHHHHH-------HHTHHHHHHHHHTCSC--HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHhChhhhhhHH-------HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Confidence 9998765432211000000 0112345555555443 5677777776665531 234556667777
Q ss_pred CCCHHHHHHHHHHHhccCC--------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--------CccHHHHHHHhhc
Q psy10052 349 DKSALLKHELAYCLGQMKD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG--------DKSSISILEKYAQ 412 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~~--------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--------~~~~~~~L~~~l~ 412 (500)
|+++.||..++.+++.+.. +..++.|..++.+. +|.+|..++.+|+.+. .+..++.+..+++
T Consensus 374 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 451 (588)
T 1b3u_A 374 DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA--KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV 451 (588)
T ss_dssp CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG
T ss_pred CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 7777777777777665532 23456666666655 6777777777776553 1345667777777
Q ss_pred CCCHhHHHHHHHHHHHhhhh
Q psy10052 413 DPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 413 d~~~~vr~~A~~aL~~l~~~ 432 (500)
|++..||..|+.+++.+...
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 77777777777777776543
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.94 E-value=1.2e-24 Score=204.48 Aligned_cols=158 Identities=22% Similarity=0.119 Sum_probs=80.7
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-hhhHHH----HH-HHhc
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-KSSISI----LE-KYAQ 112 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-~~~~~~----L~-~~l~ 112 (500)
.++.|++.|+|+++.+|..|+++|+.++.+.+++.|..+|+++ ++.+|..|+++|+.++. ...++. |. .+++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCC--CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Confidence 4555555555555555555555555555555555555555554 45555555555555542 112221 21 1234
Q ss_pred CCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhh
Q psy10052 113 DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVES 192 (500)
Q Consensus 113 d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~ 192 (500)
|+++.||..++++|++++... . ...+.+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~------------------------------------~----------------~~~~~~ 129 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKN------------------------------------P----------------IYSPKI 129 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHC------------------------------------G----------------GGHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccC------------------------------------C----------------cccHHH
Confidence 455555555555555443200 0 002244
Q ss_pred HHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC
Q psy10052 193 TLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIA 252 (500)
Q Consensus 193 i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 252 (500)
++.+...++++++.||..++.+|+.++.+..++.|..++.+ .++.||..++++|+.++
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD--PNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTC--SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHhhc
Confidence 55666666666666666666666666666666666666655 34556666666666554
No 5
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=3e-23 Score=221.20 Aligned_cols=438 Identities=13% Similarity=0.089 Sum_probs=311.5
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----cchHHHHHHHccCCCHHHHHHHHHHHHccCC-----------Cc
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGG----KTAIQCISEAFADESALLKHELAYCLGQMKD-----------SD 69 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~----~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-----------~~ 69 (500)
..++.++..|.+++.. .|..+++.+..... ...++.|+++|.++++.+|..|+.+|+.+.. ..
T Consensus 115 ~~i~~lv~~L~~~~~~--~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQM--LKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp -----------CCSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred ccHHHHHHHhcCccHH--HHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 3568899999999875 88888887765432 4578999999999999999999999998743 35
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
.++.|+..|.+.. ++.+|..|+.+|..+.. .+.++.|+.+++++++.++..|+++|.++..........
T Consensus 193 ~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 193 MVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 7899999998653 79999999999988632 357899999999999999999999999997542111000
Q ss_pred cccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcC-----------CChhhHHHHHhhccCCCHhH-
Q psy10052 140 DTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI-----------NSVESTLALTEGLSHGSSLY- 207 (500)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~-----------~~~~~i~~l~~~L~~~~~~v- 207 (500)
+.. ...++.|++++.++ +..++..++.+|..+ .....++.|+.++++.++..
T Consensus 272 v~~--------------~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~ 335 (780)
T 2z6g_A 272 VRL--------------AGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 335 (780)
T ss_dssp HHH--------------TTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHH
T ss_pred HHH--------------cCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 000 34688999999653 455676665555432 12357888888888765543
Q ss_pred HHHHHHHHhccC----------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC--------CchHHHHHHHhhcCCcH
Q psy10052 208 RHEIAFVLGQMQ----------NPSSIPALTSALEDQTQNEMVRHECAEALGAIA--------TPECYDVLRKYLSDEKV 269 (500)
Q Consensus 208 r~~a~~aL~~~~----------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~ 269 (500)
+..++.+|..+. ...+++.|+.++.+ .++.++..++++|..+. ...+++.|..++.++++
T Consensus 336 ~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~ 413 (780)
T 2z6g_A 336 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI 413 (780)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTC--SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcC--CchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCH
Confidence 444555554432 23567888899987 45789999999997664 34578999999999999
Q ss_pred HHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-------------
Q psy10052 270 VVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG------------- 336 (500)
Q Consensus 270 ~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~------------- 336 (500)
.+|..++.+|+.+............ ....++.|.+++.+......+|..|+.+|+++..
T Consensus 414 ~vr~~A~~aL~~L~~~~~~~~~~i~--------~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~ 485 (780)
T 2z6g_A 414 NVVTCAAGILSNLTCNNYKNKMMVC--------QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485 (780)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHH--------TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH--------HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 9999999999988765432211111 1234677888887644333689999999998753
Q ss_pred -hhhHHHHHHHhcCCC-HHHHHHHHHHHhccCC----------CccHHHHHHHhhcCC--------------------CC
Q psy10052 337 -KTAIQCISEAFADKS-ALLKHELAYCLGQMKD----------SDANDILRQVLEDKS--------------------QE 384 (500)
Q Consensus 337 -~~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~----------~~~~~~L~~~l~~~~--------------------~~ 384 (500)
...++.|+.+|.+.+ +.+|..++++|+++.. ..+++.|++++.+.+ ..
T Consensus 486 ~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~ 565 (780)
T 2z6g_A 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565 (780)
T ss_dssp HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence 134778889998776 5999999999999863 457899999887531 01
Q ss_pred HHHHHHHHHHHhhcC----------CccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCC
Q psy10052 385 PMVRHEAAEALGAIG----------DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPL 454 (500)
Q Consensus 385 ~~vR~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (500)
..++..++.+|+++. ....++.|..++.++++.|+..|+.+|.++......... .
T Consensus 566 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~-i-------------- 630 (780)
T 2z6g_A 566 EEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA-I-------------- 630 (780)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHH-H--------------
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHH-H--------------
Confidence 346677888888754 346789999999999999999999999998632211000 0
Q ss_pred CchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 455 DDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 455 ~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
.....++.|.+++.++ +..+|..|+++|.++.
T Consensus 631 ~~~g~i~~L~~Ll~~~--~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 631 EAEGATAPLTELLHSR--NEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 1235789999988654 4569999999999995
No 6
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.90 E-value=1.3e-22 Score=182.07 Aligned_cols=190 Identities=25% Similarity=0.330 Sum_probs=131.4
Q ss_pred HhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q psy10052 32 KNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYA 111 (500)
Q Consensus 32 ~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l 111 (500)
...+++..++.|++.|+|+++.+|..|++.|+.++.+..++.|.++|.++ ++.||..++++|+.++.+..++.|.+++
T Consensus 13 ~~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 13 PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp ---CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 33456678888888888888888888888888888777888888888877 7888888888888888877888888888
Q ss_pred cCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChh
Q psy10052 112 QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVE 191 (500)
Q Consensus 112 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~ 191 (500)
+|+++.||..|+.+|++++. +..++.|++.+.| +++.+|..|+.+|+.++.++
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~-------------------------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~ 143 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGD-------------------------ERAVEPLIKALKD--EDWFVRIAAAFALGEIGDER 143 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC-------------------------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGG
T ss_pred cCCCHHHHHHHHHHHHHhCc-------------------------HHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888887764 2346666666633 34456666666666666666
Q ss_pred hHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC
Q psy10052 192 STLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIA 252 (500)
Q Consensus 192 ~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 252 (500)
.++.|..+++++++.||..++.+|+.++.+.+++.|..++.+ .++.||..|..+|+.++
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET--GTGFARKVAVNYLETHK 202 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH--CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC--CCHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666665556666666655 34556666666665554
No 7
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=8.8e-22 Score=202.10 Aligned_cols=404 Identities=13% Similarity=0.101 Sum_probs=288.3
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC-----------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 100 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------ 100 (500)
..++.|+++|+++++.+|..|+..|+.+.. ...++.|++.|.+.+ ++.+|..++.+|..+..
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCchhHH
Confidence 468888888888888888888888877632 246788888887543 68899999999988653
Q ss_pred ----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHH
Q psy10052 101 ----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFM 176 (500)
Q Consensus 101 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~ 176 (500)
.+.++.|+++++++++.++..|+++|.++..........+. ..+.++.|++++.++ +..+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--------------~~g~i~~L~~ll~~~--~~~~ 159 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR--------------LAGGLQKMVALLNKT--NVKF 159 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH--------------HHTHHHHHHHGGGCC--CHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH--------------HcCCHHHHHHHHhcC--CHHH
Confidence 25789999999999999999999999999754211100000 034689999999654 5567
Q ss_pred HHHHHHHHHcCC--C---------hhhHHHHHhhccCCCH-hHHHHHHHHHhccC----------CCCcHHHHHHHhhcc
Q psy10052 177 RYKAMFKLRDIN--S---------VESTLALTEGLSHGSS-LYRHEIAFVLGQMQ----------NPSSIPALTSALEDQ 234 (500)
Q Consensus 177 r~~A~~~L~~~~--~---------~~~i~~l~~~L~~~~~-~vr~~a~~aL~~~~----------~~~~i~~L~~~l~~~ 234 (500)
+..++.+|..+. + ...++.++.++.+.++ .++..++.+|..+. ..++++.|..++.+.
T Consensus 160 ~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~ 239 (529)
T 1jdh_A 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC
Confidence 777666665432 1 2467888888876544 45555666655443 246788999999874
Q ss_pred CCCHHHHHHHHHHHhhcCC--------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHH
Q psy10052 235 TQNEMVRHECAEALGAIAT--------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEK 306 (500)
Q Consensus 235 ~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~ 306 (500)
++.++..++++|+.+.. .++++.|.+++.++++.++..++.+|+.+............. ...
T Consensus 240 --~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~~~ 309 (529)
T 1jdh_A 240 --SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ--------VGG 309 (529)
T ss_dssp --CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH--------TTH
T ss_pred --ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--------cCC
Confidence 68899999999987643 357899999999999999999999999886654322221111 124
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCCh--------------hhHHHHHHHhcCCC-HHHHHHHHHHHhccCC----
Q psy10052 307 ILLIGQVLKDSSKPLKERFRALFTLKNIGGK--------------TAIQCISEAFADKS-ALLKHELAYCLGQMKD---- 367 (500)
Q Consensus 307 ~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~--------------~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~---- 367 (500)
++.|.+++.+.+.+..++..++.+|+++... ..++.|+.++.+++ +.++..++++|+++..
T Consensus 310 v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh
Confidence 6788888876544456899999999876431 35788899998876 6999999999999874
Q ss_pred ------CccHHHHHHHhhcCCCCHHHHHHHHHHHhh----------------------c----------CCccHHHHHHH
Q psy10052 368 ------SDANDILRQVLEDKSQEPMVRHEAAEALGA----------------------I----------GDKSSISILEK 409 (500)
Q Consensus 368 ------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~----------------------~----------~~~~~~~~L~~ 409 (500)
..+++.|++++.+. ++.+|..|++++++ + ...+.++.|..
T Consensus 390 ~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ 467 (529)
T 1jdh_A 390 HAPLREQGAIPRLVQLLVRA--HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHH--HHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHH--hHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHH
Confidence 35789999999875 68888877666654 2 22345689999
Q ss_pred hhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 410 YAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 410 ~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
++.++++.|+..++.+|.++......... . .....++.|.+++.++ +..+|..|.++|.++
T Consensus 468 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~-i--------------~~~~~~~~L~~l~~~~--~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 468 LLYSPIENIQRVAAGVLCELAQDKEAAEA-I--------------EAEGATAPLTELLHSR--NEGVATYAAAVLFRM 528 (529)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSHHHHHH-H--------------HHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHhcCHHHHHH-H--------------HHcCChHHHHHHhcCC--CHHHHHHHHHHHHhc
Confidence 99999999999999999998643211000 0 1236789999988644 456999999999876
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=4.5e-21 Score=196.82 Aligned_cols=398 Identities=12% Similarity=0.065 Sum_probs=295.0
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHcc-CCCHHHHHHHHHHHHccCC---
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFA-DESALLKHELAYCLGQMKD--- 67 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~--- 67 (500)
....++.|+++|.+++.. +|..|+..|.++.. ...++.|++.|. ++++.+|..++++|..+..
T Consensus 15 ~~~~i~~Lv~lL~~~~~~--v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQV--VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp --CHHHHHHHHHTCSCHH--HHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hHhhHHHHHHHhCCCCHH--HHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 345789999999988875 99999999988653 247888999997 5589999999999998743
Q ss_pred -------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 68 -------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 68 -------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
...++.|+++|+++ ++.++..|+++|+.+.. .+.++.|++++.++++.++..+..+|..+
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35789999999998 79999999999998732 35789999999999999999999999887
Q ss_pred chhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC----------hhhHHHHHhh
Q psy10052 130 QFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS----------VESTLALTEG 199 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~----------~~~i~~l~~~ 199 (500)
..........+.. .+.++.|+.++.+.+ +...++.+...|..+.. ..+++.+..+
T Consensus 171 a~~~~~~~~~i~~--------------~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~l 235 (529)
T 1jdh_A 171 AYGNQESKLIILA--------------SGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235 (529)
T ss_dssp HTTCHHHHHHHHH--------------TTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTT
T ss_pred HhCCHHHHHHHHH--------------CCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 6421110000000 235888889886543 34456666666554432 2578899999
Q ss_pred ccCCCHhHHHHHHHHHhccCC--------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHH
Q psy10052 200 LSHGSSLYRHEIAFVLGQMQN--------PSSIPALTSALEDQTQNEMVRHECAEALGAIATP-----------ECYDVL 260 (500)
Q Consensus 200 L~~~~~~vr~~a~~aL~~~~~--------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L 260 (500)
+.++++.++..++++|..+.. ...++.|++++.+ .++.++..++++|+.+... ++++.|
T Consensus 236 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L 313 (529)
T 1jdh_A 236 LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Confidence 999999999999999877642 2467899999976 5689999999999988652 458888
Q ss_pred HHhhcC--CcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC--
Q psy10052 261 RKYLSD--EKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-- 336 (500)
Q Consensus 261 ~~~l~~--~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-- 336 (500)
.+++.+ .++.++..++.+|+.+.........+...+.. ...++.|.+++.+++. ..+|..++++++++..
T Consensus 314 ~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~-----~~~i~~L~~lL~~~~~-~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-----HYGLPVVVKLLHPPSH-WPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH-----TTCHHHHHHTTSTTCC-HHHHHHHHHHHHHHTTSG
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-----cCChhHHHHHhccccc-hHHHHHHHHHHHHHhcCh
Confidence 888865 34899999999999886543221111111111 1236788888887653 4688899999987763
Q ss_pred --------hhhHHHHHHHhcCCCHHHHHHHHHHHhc--------------------------------cCCCccHHHHHH
Q psy10052 337 --------KTAIQCISEAFADKSALLKHELAYCLGQ--------------------------------MKDSDANDILRQ 376 (500)
Q Consensus 337 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~--------------------------------l~~~~~~~~L~~ 376 (500)
...++.|+.++.+.++.+|..+++++++ +.....++.|+.
T Consensus 388 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ 467 (529)
T 1jdh_A 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467 (529)
T ss_dssp GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHH
Confidence 3568899999988888888877776655 223456799999
Q ss_pred HhhcCCCCHHHHHHHHHHHhhcCCc----------cHHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 377 VLEDKSQEPMVRHEAAEALGAIGDK----------SSISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 377 ~l~~~~~~~~vR~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
++.+. ++.+|..++.+|+++... +.++.|..+++++++.|+..|.++|.+|
T Consensus 468 ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 468 LLYSP--IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GGGCS--CHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCC--chHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99887 799999999999998643 5678999999999999999999999887
No 9
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.89 E-value=5.6e-22 Score=177.85 Aligned_cols=189 Identities=28% Similarity=0.294 Sum_probs=173.3
Q ss_pred CChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhcc
Q psy10052 2 IPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDK 81 (500)
Q Consensus 2 ~~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~ 81 (500)
..+..++.|++.|.+++.. +|..|+..|+.++.+..++.|.+.|.|+++.+|..++++|+.++++..++.|.++|.++
T Consensus 16 ~~~~~~~~L~~~L~~~~~~--vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 93 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYY--VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDE 93 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHH--HHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS
T ss_pred cCHhHHHHHHHHHcCCCHH--HHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC
Confidence 3567899999999988864 99999999999999889999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHH
Q psy10052 82 SQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDIN 161 (500)
Q Consensus 82 ~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (500)
++.||..|+++|+.++.+..++.|.++++|+++.||..|+.+|++++. +..++
T Consensus 94 --~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------------~~~~~ 146 (211)
T 3ltm_A 94 --DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------------------------ERAVE 146 (211)
T ss_dssp --SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------------GGGHH
T ss_pred --CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------------------HHHHH
Confidence 899999999999999999999999999999999999999999999985 44689
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCC
Q psy10052 162 KLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNP 221 (500)
Q Consensus 162 ~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~ 221 (500)
.|.+.+.| +++.+|..|+.+|+.++.+.+++.|...++++++.||..++.+|+.++..
T Consensus 147 ~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 147 PLIKALKD--EDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHTTC--SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 99999954 46789999999999999999999999999999999999999999988753
No 10
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.89 E-value=9.2e-22 Score=174.99 Aligned_cols=184 Identities=26% Similarity=0.351 Sum_probs=105.6
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHH
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKE 117 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~ 117 (500)
...+.+++.|+|+++.+|..|+++|+.++....++.|+++|.++ ++.||..|+++|+.++.+..++.|.++++|+++.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~ 91 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 91 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 34555555555555555555555555555555555555555554 4555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHH
Q psy10052 118 VSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALT 197 (500)
Q Consensus 118 vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~ 197 (500)
||..|+++|++++. +..++.|.+.+.| +++.+|..|+.+|+.++.++.++.|.
T Consensus 92 vr~~a~~aL~~~~~-------------------------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~L~ 144 (201)
T 3ltj_A 92 VRQSAAVALGQIGD-------------------------ERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLI 144 (201)
T ss_dssp HHHHHHHHHHHHCC-------------------------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHHhCc-------------------------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555555555543 2245555555532 24445555555555555555666666
Q ss_pred hhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC
Q psy10052 198 EGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIA 252 (500)
Q Consensus 198 ~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 252 (500)
.+++++++.||..++.+|+.++.+.+++.|..++.+ .++.||..|..+|+.+.
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET--GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH--CCHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC--CCHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666655 34566666666665554
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=5.1e-20 Score=191.96 Aligned_cols=426 Identities=16% Similarity=0.131 Sum_probs=316.5
Q ss_pred HHHHHHHHHHHhcCCc-----------ch-HHHHHHHccCCCHHHHHHHHHHHHcc--C----------CCccHHHHHHH
Q psy10052 22 KERFRALFTLKNIGGK-----------TA-IQCISEAFADESALLKHELAYCLGQM--K----------DSDANDILRQV 77 (500)
Q Consensus 22 ~~R~~A~~~L~~~~~~-----------~~-~~~L~~~l~~~~~~vR~~a~~~L~~~--~----------~~~~~~~L~~~ 77 (500)
..|.+|.-.|.++.+. +. -..+...+..++..-...|+|++..+ + ...+++.|+.+
T Consensus 219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~L 298 (810)
T 3now_A 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAM 298 (810)
T ss_dssp THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHH
Confidence 3899999888886532 12 22333455677777788899998875 2 35788999999
Q ss_pred hhccCCCHHHHHHHHHHHHhcCCh---------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCC
Q psy10052 78 LEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSV 148 (500)
Q Consensus 78 L~~~~~d~~vr~~a~~aL~~~~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~ 148 (500)
+.++ ++.++..|+++++.++.. ..++.|..+++++++.+|..|+.+|.+++.... .
T Consensus 299 l~s~--~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~-------------~ 363 (810)
T 3now_A 299 ATTD--DELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGG-------------Q 363 (810)
T ss_dssp HHSS--CHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTT-------------T
T ss_pred hCCC--CHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccc-------------c
Confidence 9998 899999999999998753 235889999999999999999999999874211 0
Q ss_pred CCC-CCCCC---cccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC-----------hhhHHHHHhhccCCCHhHHHHHHH
Q psy10052 149 DPT-PPLDD---VSDINKLKEILLNENEDLFMRYKAMFKLRDINS-----------VESTLALTEGLSHGSSLYRHEIAF 213 (500)
Q Consensus 149 ~~~-~~~~~---~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~-----------~~~i~~l~~~L~~~~~~vr~~a~~ 213 (500)
++. +.+.. +..++.+.++|.++..+..++..|+++|..... ..+++.|+.+|+++++.+...+++
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~ 443 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVT 443 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHH
Confidence 111 11110 234667888886652233479999999987642 368899999999999999999999
Q ss_pred HHhccCC-C------------------------------------------CcHHHHHHHhhccCCCHHHHHHHHHHHhh
Q psy10052 214 VLGQMQN-P------------------------------------------SSIPALTSALEDQTQNEMVRHECAEALGA 250 (500)
Q Consensus 214 aL~~~~~-~------------------------------------------~~i~~L~~~l~~~~~~~~vr~~a~~aL~~ 250 (500)
+|+.+.. . +++|.|+.++.+ .++.+|..|+++|++
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNA 521 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 9987753 1 468999999987 468999999999998
Q ss_pred cCCc----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCC
Q psy10052 251 IATP----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKP 320 (500)
Q Consensus 251 ~~~~----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~ 320 (500)
+... ++++.|..++.+.++.++..|+++|.++.....+...+... .....++.|..++... .+
T Consensus 522 LA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~------~~~~aIppLv~LL~~~-~~ 594 (810)
T 3now_A 522 VCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQ------RSLDVIRPLLNLLQQD-CT 594 (810)
T ss_dssp HHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTH------HHHHTHHHHHHTTSTT-SC
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcch------hhhcHHHHHHHHhCCC-Cc
Confidence 7642 57899999999999999999999999876543322111000 0012577888888643 33
Q ss_pred HHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------CccHHHHHHHh
Q psy10052 321 LKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLKHELAYCLGQMKD-----------SDANDILRQVL 378 (500)
Q Consensus 321 ~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~-----------~~~~~~L~~~l 378 (500)
...+..|+++|.++.. ..+++.|..++.+++..+|..|+++++++.. ...++.|+.++
T Consensus 595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL 674 (810)
T 3now_A 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC 674 (810)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHh
Confidence 4456678888887654 2467889999999999999999999998753 35788999999
Q ss_pred hcCCCCHHHHHHHHHHHhhcCC------------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCC
Q psy10052 379 EDKSQEPMVRHEAAEALGAIGD------------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYG 446 (500)
Q Consensus 379 ~~~~~~~~vR~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~ 446 (500)
... +..+|.+|+.+|+++.. ...++.|..++.+.+..++..|+++|.++...........
T Consensus 675 ~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l------ 746 (810)
T 3now_A 675 EDE--DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKL------ 746 (810)
T ss_dssp GCS--SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred cCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHH------
Confidence 876 79999999999998742 3578899999999999999999999999976432111110
Q ss_pred CCCCCCCCCchhhHHHHHHHHhcCC-ccHHHHHHHHHHhHhc
Q psy10052 447 SVDPTPPLDDVSDINKLKEILLNEN-EDLFMRYKAMFKLRDI 487 (500)
Q Consensus 447 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~r~~a~~al~~~ 487 (500)
.....++.|..+|...+ .+..+...|..+|.++
T Consensus 747 --------~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 747 --------FETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp --------HTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred --------HHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 12378899999886442 4567888888888877
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=2.5e-20 Score=195.48 Aligned_cols=408 Identities=14% Similarity=0.107 Sum_probs=296.6
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC-----------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 100 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------ 100 (500)
..++.|+++|+++++.+|..|+.+|+.+.. ...++.|++.|.+.+ ++.+|..|+.+|..+..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHH
Confidence 468888888888888888888888887632 135788888888653 68899999999887652
Q ss_pred ----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHH
Q psy10052 101 ----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFM 176 (500)
Q Consensus 101 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~ 176 (500)
.+.++.|+++++++++.++..|+++|.++..........+.. ...++.|++++.++ +..+
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~--------------~g~i~~Lv~lL~~~--~~~~ 156 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--------------AGGLQKMVALLNKT--NVKF 156 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH--------------TTHHHHHHHGGGCC--CHHH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH--------------CCChHHHHHHHCcC--CHHH
Confidence 357899999999999999999999999997542111000000 34689999999665 4456
Q ss_pred HHHHHHHHHcCC--C---------hhhHHHHHhhccCCC-HhHHHHHHHHHhccCC----------CCcHHHHHHHhhcc
Q psy10052 177 RYKAMFKLRDIN--S---------VESTLALTEGLSHGS-SLYRHEIAFVLGQMQN----------PSSIPALTSALEDQ 234 (500)
Q Consensus 177 r~~A~~~L~~~~--~---------~~~i~~l~~~L~~~~-~~vr~~a~~aL~~~~~----------~~~i~~L~~~l~~~ 234 (500)
+..++.+|..+. . ...++.|+.++.+.+ ..++..++.+|..+.. ..+++.|+.++.+
T Consensus 157 ~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~- 235 (644)
T 2z6h_A 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD- 235 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc-
Confidence 776666665433 1 246888888888754 5677777777766542 3568889999987
Q ss_pred CCCHHHHHHHHHHHhhcCC--------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHH
Q psy10052 235 TQNEMVRHECAEALGAIAT--------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEK 306 (500)
Q Consensus 235 ~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~ 306 (500)
.+..++..++++|..+.. ..+++.|.+++.++++.++..++.+|+.+............. ...
T Consensus 236 -~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~--------~g~ 306 (644)
T 2z6h_A 236 -PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ--------VGG 306 (644)
T ss_dssp -SCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------TTH
T ss_pred -CCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--------cCC
Confidence 368899999999987653 257899999999999999999999999886644322111111 124
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCC--------------hhhHHHHHHHhcCCC-HHHHHHHHHHHhccCC----
Q psy10052 307 ILLIGQVLKDSSKPLKERFRALFTLKNIGG--------------KTAIQCISEAFADKS-ALLKHELAYCLGQMKD---- 367 (500)
Q Consensus 307 ~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~--------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~---- 367 (500)
++.|.+++.+......++..|+.+|+++.. ...++.|+++|.+++ +.++..++++|+++..
T Consensus 307 v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 667888887644334689999999998753 146788889998774 7999999999999863
Q ss_pred ------CccHHHHHHHhhcCC--------------------CCHHHHHHHHHHHhhcC----------CccHHHHHHHhh
Q psy10052 368 ------SDANDILRQVLEDKS--------------------QEPMVRHEAAEALGAIG----------DKSSISILEKYA 411 (500)
Q Consensus 368 ------~~~~~~L~~~l~~~~--------------------~~~~vR~~a~~aL~~~~----------~~~~~~~L~~~l 411 (500)
..+++.|++++.+.+ .+..++..++.+|..+. ....++.|..++
T Consensus 387 ~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL 466 (644)
T 2z6h_A 387 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL 466 (644)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHH
Confidence 457899999887631 12455666777776443 345789999999
Q ss_pred cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcCC
Q psy10052 412 QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS 489 (500)
Q Consensus 412 ~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g~ 489 (500)
.+.++.++..|+.+|.++......... . .....++.|.+++.+++ ..+|..|+++|+++..
T Consensus 467 ~~~~~~v~~~a~~aL~~l~~~~~~~~~-i--------------~~~g~l~~L~~ll~~~~--~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 467 YSPIENIQRVAAGVLCELAQDKEAAEA-I--------------EAEGATAPLTELLHSRN--EGVATYAAAVLFRMSE 527 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSHHHHHH-H--------------HHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHH-H--------------HHcCChhHHHHHHcCCC--HHHHHHHHHHHHHHhc
Confidence 999999999999999998643211000 0 11356889999886554 4699999999999964
No 13
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.88 E-value=1.9e-21 Score=172.93 Aligned_cols=186 Identities=28% Similarity=0.306 Sum_probs=137.5
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccC
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKS 82 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~ 82 (500)
.+...+.+++.|.++++. +|..|+..|+.++.+..++.|++.|.|+++.+|..|+++|+.++++..++.|..+|.++
T Consensus 12 ~~~~~~~~i~~L~~~~~~--vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~- 88 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYY--VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDE- 88 (201)
T ss_dssp CHHHHHHHHHHTTCSCHH--HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS-
T ss_pred CCcchHHHHHHhcCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC-
Confidence 345667777777777754 77777777777777667777777777777777777777777777777777777777776
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHH
Q psy10052 83 QEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINK 162 (500)
Q Consensus 83 ~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (500)
++.||..|+++|+.++.+..++.|.++++|+++.||..|+++|++++. ...++.
T Consensus 89 -~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------------~~~~~~ 142 (201)
T 3ltj_A 89 -DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------------------------ERAVEP 142 (201)
T ss_dssp -SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------------------------GGGHHH
T ss_pred -CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------------------------HHHHHH
Confidence 677777777777777777777777777777777777777777777764 335677
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccC
Q psy10052 163 LKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQ 219 (500)
Q Consensus 163 L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~ 219 (500)
|.+.+.| +++.+|..|+.+|+.++++++++.|...++++++.||..++.+|+++.
T Consensus 143 L~~~l~d--~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 143 LIKALKD--EDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHTTC--SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7777744 355677777777777777777777777777777777777777777664
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.88 E-value=1.5e-19 Score=187.24 Aligned_cols=422 Identities=14% Similarity=0.143 Sum_probs=297.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--c----chHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHH----HHH
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG--K----TAIQCISEAFADESALLKHELAYCLGQMKDSDANDI----LRQ 76 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~--~----~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~----L~~ 76 (500)
...+++.+.+++.. .|..+-..+..+.. + -.+..+.+-|.|+++.+|..|+.+|+.++.++..+. +.+
T Consensus 51 ~~~vi~l~~s~~~~--~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~ 128 (591)
T 2vgl_B 51 FPDVVNCMQTDNLE--LKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK 128 (591)
T ss_dssp HHHHHHTTSSSCHH--HHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHH--HHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45567777777764 77666555555432 1 245566677889999999999999999998776555 888
Q ss_pred HhhccCCCHHHHHHHHHHHHhcCC--h------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCC
Q psy10052 77 VLEDKSQEPMVRHEAAEALGAIGD--K------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSV 148 (500)
Q Consensus 77 ~L~~~~~d~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~ 148 (500)
++.|+ ++.||..|+.+++++.. + +.++.|.++++|+++.|+..|+.+|..+........ +
T Consensus 129 ~L~d~--~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-------~--- 196 (591)
T 2vgl_B 129 CLKDE--DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-------L--- 196 (591)
T ss_dssp HSSCS--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-------S---
T ss_pred HcCCC--ChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-------c---
Confidence 88888 89999999999998742 2 366889999999999999999999999875321000 0
Q ss_pred CCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh------hhHHHHHhhccCCCHhHHHHHHHHHhccC---
Q psy10052 149 DPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV------ESTLALTEGLSHGSSLYRHEIAFVLGQMQ--- 219 (500)
Q Consensus 149 ~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~------~~i~~l~~~L~~~~~~vr~~a~~aL~~~~--- 219 (500)
..+ ....+..|+..+.+ .++|.+...+..++.+... ..++.+...+++.++.|+.++++++..+.
T Consensus 197 ---~~l-~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 197 ---LDL-NPQNINKLLTALNE--CTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp ---CCC-HHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred ---hhc-cHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence 000 02346777777743 5678999999999988742 46778888889999999999999998875
Q ss_pred --CCCcHH--------HHHHHhhccCCCHHHHHHHHHHHhhcCC--chHH-HHHHH--hhcCCcHHHHHHHHHHhhhccc
Q psy10052 220 --NPSSIP--------ALTSALEDQTQNEMVRHECAEALGAIAT--PECY-DVLRK--YLSDEKVVVRQSCEIALDMCDY 284 (500)
Q Consensus 220 --~~~~i~--------~L~~~l~~~~~~~~vr~~a~~aL~~~~~--~~~~-~~L~~--~l~~~~~~vr~~a~~al~~l~~ 284 (500)
+++.+. .|+.++ + .++.+|..++.+|+.+.. +..+ +.+.. .+.+.+..||..++..+..+..
T Consensus 271 ~~~~~~~~~~~~~~~~~L~~L~-~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 271 PKDSDYYNMLLKKLAPPLVTLL-S--GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp CBTTBSHHHHHHHTHHHHHHHT-T--SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHh-c--CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence 234433 334433 3 468999999999987652 2222 11111 1224448999999998887764
Q ss_pred cchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCCHHHHHHH
Q psy10052 285 ENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG------KTAIQCISEAFADKSALLKHEL 358 (500)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a 358 (500)
..+- ...++.|...+.+.+ ...|..++++++.+.. ...++.|++++.+.+..++..+
T Consensus 348 ~~nv---------------~~iv~~L~~~l~~~d--~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 348 QANI---------------AQVLAELKEYATEVD--VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp SSTH---------------HHHHHHHHHHTTSSC--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hhhH---------------HHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHH
Confidence 4321 123445556665544 5688999999987764 4567888999999999999888
Q ss_pred HHHHhccC--C----CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc-----cHHHHHHHhhcCCCHhHHHHHHHHHH
Q psy10052 359 AYCLGQMK--D----SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----SSISILEKYAQDPVKEVSETCYLALK 427 (500)
Q Consensus 359 ~~aL~~l~--~----~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~-----~~~~~L~~~l~d~~~~vr~~A~~aL~ 427 (500)
+.++..+- . ..+++.|.+.+++. .++.+|..+++.||+++.. +.+..+.+.+.+.++.||..++.++.
T Consensus 411 i~~l~~ii~~~p~~~~~~v~~L~~~l~~~-~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~ 489 (591)
T 2vgl_B 411 IVVIRDIFRKYPNKYESIIATLCENLDSL-DEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIV 489 (591)
T ss_dssp HHHHHHHHHHSCSSCCTTHHHHHHTTTTC-CSHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 88887761 2 24788898888754 3799999999999999752 33444444445678999999999999
Q ss_pred HhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 428 RIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 428 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
++....+. .....+..+.+....++.+..+|.+|.+.++-+.
T Consensus 490 Kl~~~~p~-------------------~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 490 KLFLKKPS-------------------ETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HHHTTCCS-------------------TTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred HHHhcCch-------------------HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence 99753210 1124455555554333355579999999888775
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=7.9e-21 Score=202.57 Aligned_cols=401 Identities=11% Similarity=0.053 Sum_probs=297.5
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHcc-CCCHHHHHHHHHHHHccC-----
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFA-DESALLKHELAYCLGQMK----- 66 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~----- 66 (500)
...++.|+++|.+++.. +|..|+..|..+.. +..++.|++.|. ++++.+|..|+++|..+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~--vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~ 226 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQV--VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG 226 (780)
T ss_dssp HHHHHHHHHHHHCSCHH--HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH
T ss_pred hCCHHHHHHHHCCCCHH--HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 45789999999988764 99999999998763 357889999997 559999999999998752
Q ss_pred -----CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 67 -----DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 67 -----~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
....++.|+++|++. ++.+|..|+++|+.+.. .+.++.|++++.+++..++..++.+|..+.
T Consensus 227 ~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 227 LLAIFKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 304 (780)
T ss_dssp HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 245789999999998 79999999999998842 357889999999999999999999988765
Q ss_pred hhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC----------hhhHHHHHhhc
Q psy10052 131 FVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS----------VESTLALTEGL 200 (500)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~----------~~~i~~l~~~L 200 (500)
.........+.. ...++.|+.++.+.+ ....+..++.+|..+.. ..+++.|+.++
T Consensus 305 ~~~~e~~~~i~~--------------~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL 369 (780)
T 2z6g_A 305 YGNQESKLIILA--------------SGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369 (780)
T ss_dssp TTCHHHHHHHHT--------------TTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGT
T ss_pred cCChHHHHHHHH--------------cCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHH
Confidence 321100000000 235888999997653 33344444444433221 24678899999
Q ss_pred cCCCHhHHHHHHHHHhccC--------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHH
Q psy10052 201 SHGSSLYRHEIAFVLGQMQ--------NPSSIPALTSALEDQTQNEMVRHECAEALGAIATP-----------ECYDVLR 261 (500)
Q Consensus 201 ~~~~~~vr~~a~~aL~~~~--------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~ 261 (500)
.+.++.++..++.+|..+. ...+++.|++++.+ .++.+|..|+++|+.+... .+++.|.
T Consensus 370 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~--~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 447 (780)
T 2z6g_A 370 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 9989999999999987764 23468889999986 5689999999999988652 4688888
Q ss_pred HhhcCC-c-HHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC---
Q psy10052 262 KYLSDE-K-VVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG--- 336 (500)
Q Consensus 262 ~~l~~~-~-~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~--- 336 (500)
+++.+. + ..++..++.+|+.+.............+.. ...++.|.+++.+.+. +.+|..++++|+++..
T Consensus 448 ~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~-----~~~l~~L~~lL~~~~~-~~v~~~A~~aL~nLa~~~~ 521 (780)
T 2z6g_A 448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL-----HYGLPVVVKLLHPPSH-WPLIKATVGLIRNLALCPA 521 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH-----TTCHHHHHHTTSTTCC-HHHHHHHHHHHHHHHSSHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-----cCCHHHHHHHhcCCCh-HHHHHHHHHHHHHHhcCHH
Confidence 888753 3 489999999999886543221100001100 1236678888877653 4689999999988753
Q ss_pred -------hhhHHHHHHHhcCCC----------------------HHHHHHHHHHHhccC----------CCccHHHHHHH
Q psy10052 337 -------KTAIQCISEAFADKS----------------------ALLKHELAYCLGQMK----------DSDANDILRQV 377 (500)
Q Consensus 337 -------~~~~~~L~~~l~~~~----------------------~~vr~~a~~aL~~l~----------~~~~~~~L~~~ 377 (500)
..+++.|+.+|.+.+ ..++..++.+|+.+. ...+++.|+.+
T Consensus 522 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~l 601 (780)
T 2z6g_A 522 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQL 601 (780)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHG
T ss_pred HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHH
Confidence 346788888886544 345666777777754 35689999999
Q ss_pred hhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 378 LEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 378 l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
+.+. ++.+|..|+.+|+++.. .+.++.|..+++++++.||..|+++|.++....
T Consensus 602 L~~~--~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 602 LYSP--IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp GGCS--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HcCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9887 79999999999988643 246788999999999999999999999997643
No 16
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=4.2e-20 Score=193.87 Aligned_cols=402 Identities=12% Similarity=0.059 Sum_probs=300.5
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHccC-CCHHHHHHHHHHHHccC----
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFAD-ESALLKHELAYCLGQMK---- 66 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-----------~~~~~~L~~~l~~-~~~~vR~~a~~~L~~~~---- 66 (500)
....++.|+++|.+++.. +|..|...|.++.. ...++.|++.|.+ +++.+|..|+.+|..+.
T Consensus 12 ~~g~i~~Lv~lL~~~~~~--vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQV--VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp CTTTHHHHHHHHTCSCHH--HHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhchHHHHHHHHcCCCHH--HHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 345789999999988865 99999999998753 1468889999975 58999999999998764
Q ss_pred ------CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 67 ------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 67 ------~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
....++.|+++|+++ ++.+|..|+++|+.+.. .+.++.|+++++++++.++..++.+|..+
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 245789999999998 79999999999998741 35789999999999999999998899887
Q ss_pred chhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC----------hhhHHHHHhh
Q psy10052 130 QFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS----------VESTLALTEG 199 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~----------~~~i~~l~~~ 199 (500)
..........+.. ...++.|+.++.+.+ ....++.++.+|..+.. ..+++.|..+
T Consensus 168 a~~~~~~~~~i~~--------------~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 168 AYGNQESKLIILA--------------SGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp HTTCHHHHHHHHH--------------TTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred HhcCcHHHHHHHH--------------cCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 6421110000000 235889999997653 44567777777665432 2468899999
Q ss_pred ccCCCHhHHHHHHHHHhccCC--------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHH
Q psy10052 200 LSHGSSLYRHEIAFVLGQMQN--------PSSIPALTSALEDQTQNEMVRHECAEALGAIATP-----------ECYDVL 260 (500)
Q Consensus 200 L~~~~~~vr~~a~~aL~~~~~--------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L 260 (500)
+.+.++.++..++.+|..+.. ...++.|+.++.+ .++.++..++++|+.+... ++++.|
T Consensus 233 l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~--~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 999999999999999977653 2468889999986 4689999999999877542 368888
Q ss_pred HHhhcCC--cHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC--
Q psy10052 261 RKYLSDE--KVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-- 336 (500)
Q Consensus 261 ~~~l~~~--~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-- 336 (500)
..++.+. .+.++..++.+|+.+.............+. ....++.|.+++.+++. ..++..++++|+++..
T Consensus 311 v~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~-----~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR-----LHYGLPVVVKLLHPPSH-WPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH-----HTTHHHHHHHTTSTTCC-HHHHHHHHHHHHHHTTSG
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH-----HccChHHHHHHhCccCc-hHHHHHHHHHHHHHccCH
Confidence 8888763 379999999999988654322111100000 01246788888877642 4689999999988653
Q ss_pred --------hhhHHHHHHHhcCCCH----------------------HHHHHHHHHHhccC----------CCccHHHHHH
Q psy10052 337 --------KTAIQCISEAFADKSA----------------------LLKHELAYCLGQMK----------DSDANDILRQ 376 (500)
Q Consensus 337 --------~~~~~~L~~~l~~~~~----------------------~vr~~a~~aL~~l~----------~~~~~~~L~~ 376 (500)
..+++.|+.++.+.++ .++..++.+|..+. ....++.|++
T Consensus 385 ~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~ 464 (644)
T 2z6h_A 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464 (644)
T ss_dssp GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHH
Confidence 4577888888876444 44555666665433 3457999999
Q ss_pred HhhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 377 VLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 377 ~l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
++.+. ++.++..++.+|+++.. ...++.|..++.++++.||..|+++|+.+....
T Consensus 465 lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 465 LLYSP--IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HTTCS--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHcCC--CHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 99876 79999999999988754 246788999999999999999999999987643
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.87 E-value=2.4e-18 Score=179.42 Aligned_cols=442 Identities=14% Similarity=0.090 Sum_probs=318.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc------------hHHHHHHHcc---CC--------CHHHHHHHHHHHH
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGGKT------------AIQCISEAFA---DE--------SALLKHELAYCLG 63 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~------------~~~~L~~~l~---~~--------~~~vR~~a~~~L~ 63 (500)
+..|++.+.+....-..|..++..|.+.-+.. -+..|++.-. +. .+..|.++.-+|.
T Consensus 150 ~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~ 229 (810)
T 3now_A 150 LTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLA 229 (810)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHH
Confidence 34566777777766678999999998765221 2223333221 11 4688999999998
Q ss_pred ccCCC--------c----cHHHHHHHhhccCCCHHHHHHHHHHHHhcC------------ChhhHHHHHHHhcCCCHHHH
Q psy10052 64 QMKDS--------D----ANDILRQVLEDKSQEPMVRHEAAEALGAIG------------DKSSISILEKYAQDPVKEVS 119 (500)
Q Consensus 64 ~~~~~--------~----~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~~~~vr 119 (500)
++.+. . .-..+...+... +..-...|++++..+- ..++++.|+.+++++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q 307 (810)
T 3now_A 230 RIYENMYYDEAKARFTDQIDEYIKDKLLAP--DMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ 307 (810)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHhccC--ChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHH
Confidence 87321 1 122333333333 5666777888887752 34789999999999999999
Q ss_pred HHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC----------
Q psy10052 120 ETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS---------- 189 (500)
Q Consensus 120 ~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~---------- 189 (500)
..|.++++.+......... +. +..++.|..++.+ .+..+|..|+.+|++.+.
T Consensus 308 ~~A~~al~~aa~~~~~R~~-I~---------------~~gv~~L~~Ll~s--~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 308 RVACECLIAASSKKDKAKA-LC---------------EQGVDILKRLYHS--KNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHT-TH---------------HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred HHHHHHHHHHcCCcHHHHH-HH---------------HcCcHHHHHHHcC--CCHHHHHHHHHHHHHhccccccCccccc
Confidence 9999999998765332211 00 1225788888854 446689999888887641
Q ss_pred ------hhhHHHHHhhccCC--CHhHHHHHHHHHhccC-----------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhh
Q psy10052 190 ------VESTLALTEGLSHG--SSLYRHEIAFVLGQMQ-----------NPSSIPALTSALEDQTQNEMVRHECAEALGA 250 (500)
Q Consensus 190 ------~~~i~~l~~~L~~~--~~~vr~~a~~aL~~~~-----------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~ 250 (500)
.+.++.+.++|.++ +++++..++++|..+. +.+++|.|++++.. .++.++..++++|++
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s--~d~~i~~~al~~L~N 447 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG--GNQSCLYGVVTTFVN 447 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC--CChHHHHHHHHHHHH
Confidence 12366788888877 8899999999998765 34679999999986 457899999999987
Q ss_pred cCCc-------------------------------------------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccch
Q psy10052 251 IATP-------------------------------------------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENS 287 (500)
Q Consensus 251 ~~~~-------------------------------------------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~ 287 (500)
+... +++|.|..+++++++.++..++++|+.+....
T Consensus 448 Lt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~- 526 (810)
T 3now_A 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK- 526 (810)
T ss_dssp HTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-
T ss_pred HcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-
Confidence 7641 36899999999999999999999999987432
Q ss_pred hHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC---Ch----------hhHHHHHHHhcCC-CHH
Q psy10052 288 VELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG---GK----------TAIQCISEAFADK-SAL 353 (500)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~---~~----------~~~~~L~~~l~~~-~~~ 353 (500)
........ ...++.|..++.+.+. ..+..|+++|.++. ++ .+++.|+.+|.++ +..
T Consensus 527 ~~r~~Vv~--------~Gaip~Lv~LL~s~~~--~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l 596 (810)
T 3now_A 527 ELRGKVVQ--------EGGVKALLRMALEGTE--KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL 596 (810)
T ss_dssp HHHHHHHH--------TTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHH
T ss_pred HHHHHHHH--------CCCHHHHHHHHccCCH--HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHH
Confidence 22222111 2357788888887653 57889999888642 21 3578889999855 445
Q ss_pred HHHHHHHHHhccCCC-----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC-----------ccHHHHHHHhh
Q psy10052 354 LKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYA 411 (500)
Q Consensus 354 vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l 411 (500)
.+..++++|.++... .+++.|..++.+. ++.+|..|+++|+++.. .+.++.|..++
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL 674 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC 674 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHh
Confidence 567899999988753 3689999999886 68999999999999752 35788999999
Q ss_pred cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc--CC
Q psy10052 412 QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI--NS 489 (500)
Q Consensus 412 ~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~--g~ 489 (500)
..++..+|..|+++|+.+........+... .....++.|+++|. +.+..+|..|++++.++ |+
T Consensus 675 ~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii-------------~~~g~I~~Lv~LL~--s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 675 EDEDEETATACAGALAIITSVSVKCCEKIL-------------AIASWLDILHTLIA--NPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHCHHHHHHHH-------------TSTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-------------HHcCCHHHHHHHHC--CCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999874322111110 11378999999995 55667999999999998 46
Q ss_pred hhhHHHhhc
Q psy10052 490 VESTLALTE 498 (500)
Q Consensus 490 ~~~~~~l~~ 498 (500)
.+....+.+
T Consensus 740 ~e~~~~l~e 748 (810)
T 3now_A 740 EEIAKKLFE 748 (810)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 666666553
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.86 E-value=1.7e-19 Score=181.17 Aligned_cols=330 Identities=13% Similarity=0.116 Sum_probs=229.6
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHcc----CC--------C-ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------
Q psy10052 40 IQCISEAFADESALLKHELAYCLGQM----KD--------S-DANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 100 (500)
Q Consensus 40 ~~~L~~~l~~~~~~vR~~a~~~L~~~----~~--------~-~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------ 100 (500)
++.|++.+.++++.+|..|+..|..+ .+ . ..++.|+++|.+++ ++.+|..|+++|+.+..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHH
Confidence 56677777777777777777777654 11 1 56788888887763 57888888888887653
Q ss_pred -----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHH
Q psy10052 101 -----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLF 175 (500)
Q Consensus 101 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~ 175 (500)
.+.++.|+++++++++.||..|+++|+++..........+.. .+.++.|+.++.+ +.+..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--------------~~~i~~L~~~l~~-~~~~~ 165 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD--------------CNILPPLLQLFSK-QNRLT 165 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------------TTCHHHHHHHTTS-CCCHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH--------------CCCHHHHHHHhcC-CCCHH
Confidence 357899999999999999999999999987543110000000 2358899999964 24567
Q ss_pred HHHHHHHHHHcCCC-----------hhhHHHHHhhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhc
Q psy10052 176 MRYKAMFKLRDINS-----------VESTLALTEGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALED 233 (500)
Q Consensus 176 ~r~~A~~~L~~~~~-----------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~ 233 (500)
+|..++.+|+.+.. ..+++.|...+.++++.++..++++|+.+.. ...++.|+.++.+
T Consensus 166 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC
Confidence 89999888886542 2588999999999999999999999988764 3578999999986
Q ss_pred cCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCC
Q psy10052 234 QTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMI 302 (500)
Q Consensus 234 ~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~ 302 (500)
.++.++..++++|+.+... ++++.|..++.++++.+|..++.+|+.+........+...
T Consensus 246 --~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~-------- 315 (450)
T 2jdq_A 246 --NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI-------- 315 (450)
T ss_dssp --SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH--------
T ss_pred --CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--------
Confidence 4688999999999887642 4688889999999999999999999877643322111000
Q ss_pred ChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC------------Ccc
Q psy10052 303 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD------------SDA 370 (500)
Q Consensus 303 ~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~------------~~~ 370 (500)
....++.|+.++.++++.+|..++++|+++.. ...
T Consensus 316 ---------------------------------~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 362 (450)
T 2jdq_A 316 ---------------------------------DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362 (450)
T ss_dssp ---------------------------------HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred ---------------------------------HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 01234555555555555555555555555421 125
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc----------------------cHHHHHHHhhcCCCHhHHHHHHHHHHH
Q psy10052 371 NDILRQVLEDKSQEPMVRHEAAEALGAIGDK----------------------SSISILEKYAQDPVKEVSETCYLALKR 428 (500)
Q Consensus 371 ~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~----------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 428 (500)
++.|+.++.+. ++.+|..++.+|.++... ..++.|..+.++++..|+..|...|.+
T Consensus 363 i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 363 IKPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp HHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66666666654 566777776666654210 123556666777888888888888887
Q ss_pred hh
Q psy10052 429 IQ 430 (500)
Q Consensus 429 l~ 430 (500)
+-
T Consensus 441 ~~ 442 (450)
T 2jdq_A 441 YF 442 (450)
T ss_dssp HH
T ss_pred HC
Confidence 64
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.86 E-value=1.2e-19 Score=187.81 Aligned_cols=420 Identities=14% Similarity=0.135 Sum_probs=301.6
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCC--cchHHHHHHHccCCCHHHHHHHHHHHHccCC--Cc----cHH
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKN---IGG--KTAIQCISEAFADESALLKHELAYCLGQMKD--SD----AND 72 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~---~~~--~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--~~----~~~ 72 (500)
+.++.++.+.|++++.. .|..++..+-- .|. +.....+++++.+++..+|..+..++..+.. ++ +++
T Consensus 12 ~~e~~~i~~~L~~~~~~--~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n 89 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKE--KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 89 (591)
T ss_dssp SSHHHHHHHHTTSSCHH--HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHH
T ss_pred CChHHHHHHHHcCCCHH--HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence 35788999999998864 67666655543 242 3578888899999999999887777766533 22 356
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCChhhHH----HHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCC
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIGDKSSIS----ILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSV 148 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~----~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~ 148 (500)
.|.+-|.++ ++.+|..|+++|+.++.++..+ .+.+++.|+++.||..|+.++.++.........
T Consensus 90 ~l~kdL~~~--n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---------- 157 (591)
T 2vgl_B 90 SFVKDCEDP--NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---------- 157 (591)
T ss_dssp HHGGGSSSS--SHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH----------
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc----------
Confidence 666667777 8999999999999999876544 488899999999999999999998642210000
Q ss_pred CCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh-----------hhHHHHHhhccCCCHhHHHHHHHHHhc
Q psy10052 149 DPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV-----------ESTLALTEGLSHGSSLYRHEIAFVLGQ 217 (500)
Q Consensus 149 ~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~-----------~~i~~l~~~L~~~~~~vr~~a~~aL~~ 217 (500)
....++.+.++|.| +++.++..|+.+|.++... ..+..|+..+.+.++..+..+++.++.
T Consensus 158 -------~~~~~~~l~~lL~d--~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 158 -------DQGFLDSLRDLIAD--SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp -------HHHHHHHHHHTTSC--SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred -------cccHHHHHHHHhCC--CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 01246788888854 5678999999999987643 237778888888899999999999999
Q ss_pred cCCC------CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-----chHH--------HHHHHhhcCCcHHHHHHHHHH
Q psy10052 218 MQNP------SSIPALTSALEDQTQNEMVRHECAEALGAIAT-----PECY--------DVLRKYLSDEKVVVRQSCEIA 278 (500)
Q Consensus 218 ~~~~------~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----~~~~--------~~L~~~l~~~~~~vr~~a~~a 278 (500)
+... ..++.+..++++ .++.|+..|++++..+.. +..+ +.|..+ .++++.+|..++.+
T Consensus 229 l~~~~~~~~~~~l~~l~~~l~~--~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~ 305 (591)
T 2vgl_B 229 YNPKDDREAQSICERVTPRLSH--ANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRN 305 (591)
T ss_dssp SCCCSHHHHHHHHHHHTTCSCS--STTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHH
Confidence 8753 345666666766 467899999999998752 2222 334444 45889999999999
Q ss_pred hhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhh----HHHHHHHhcCCCHHH
Q psy10052 279 LDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTA----IQCISEAFADKSALL 354 (500)
Q Consensus 279 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~----~~~L~~~l~~~~~~v 354 (500)
++.+....+..+ .. .+..++...+.++.+|..++..+..++++.. ++.|...+.+.+..+
T Consensus 306 l~~i~~~~p~~~---------~~-------~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~ 369 (591)
T 2vgl_B 306 INLIVQKRPEIL---------KQ-------EIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDF 369 (591)
T ss_dssp HHHHHHHCCSTT---------TT-------CTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHhChHHH---------HH-------HHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHH
Confidence 987654322110 00 0111112123337799999999999987654 445666777889999
Q ss_pred HHHHHHHHhccCC------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--C----ccHHHHHHHhhc-CCCHhHHHH
Q psy10052 355 KHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG--D----KSSISILEKYAQ-DPVKEVSET 421 (500)
Q Consensus 355 r~~a~~aL~~l~~------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~----~~~~~~L~~~l~-d~~~~vr~~ 421 (500)
|..++++++.+.. ...++.|++++.+. ...++..++.++..+- . ..+++.|.+.++ +.++.++..
T Consensus 370 r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~--~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~ 447 (591)
T 2vgl_B 370 VRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK--VNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAA 447 (591)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHH
Confidence 9999999998875 34688999999887 6899999988888762 1 346788888886 578999999
Q ss_pred HHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcCC
Q psy10052 422 CYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS 489 (500)
Q Consensus 422 A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g~ 489 (500)
++|.||+.+..... .+..+..+.+.+. +.+..+|..+..++.+++.
T Consensus 448 ~~wilGey~~~~~~--------------------~~~~l~~l~~~~~--~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 448 MIWIVGEYAERIDN--------------------ADELLESFLEGFH--DESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHTTCTTCTT--------------------HHHHHHHHSTTCS--SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccccccC--------------------HHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHh
Confidence 99999998753210 1234444444333 3345699999999998863
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=3.6e-19 Score=182.52 Aligned_cols=333 Identities=16% Similarity=0.141 Sum_probs=246.8
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHcc--CC----------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh----
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQM--KD----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---- 101 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~--~~----------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~---- 101 (500)
..++.|++.|.++++.+|..|++.|+.+ +. ...++.|+++|.+++ ++.+|..|+++|+.+...
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHH
Confidence 4588999999999999999999999876 21 247899999999872 399999999999998652
Q ss_pred -------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCH
Q psy10052 102 -------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL 174 (500)
Q Consensus 102 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~ 174 (500)
+.++.|+.++.++++.||..|+++|+++..........+.. ...++.|+..+.+ +.+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~--------------~g~l~~Ll~lL~~-~~~~ 217 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA--------------NGALLPLLAQLNE-HTKL 217 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH--------------TTCHHHHHHTCCT-TCCH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH--------------CCcHHHHHHHHhc-CCCH
Confidence 47899999999999999999999999997532210000000 2358889998843 2456
Q ss_pred HHHHHHHHHHHcCCCh----------hhHHHHHhhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhc
Q psy10052 175 FMRYKAMFKLRDINSV----------ESTLALTEGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALED 233 (500)
Q Consensus 175 ~~r~~A~~~L~~~~~~----------~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~ 233 (500)
.++..++.+|..+... .+++.|..++.++++.++..++.+|+.+.. .+.++.|+.++.+
T Consensus 218 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 218 SMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 7888888888775432 478999999999999999999999987763 3578899999987
Q ss_pred cCCCHHHHHHHHHHHhhcCC-----------chHHHHHHHhhcCC-cHHHHHHHHHHhhhccccchhHhHHHHhhhccCC
Q psy10052 234 QTQNEMVRHECAEALGAIAT-----------PECYDVLRKYLSDE-KVVVRQSCEIALDMCDYENSVELQYADTLCKFKM 301 (500)
Q Consensus 234 ~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~-~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~ 301 (500)
. ++.++..|+.+|+.+.. .++++.|..++.++ ++.++..++++|+.+............
T Consensus 298 ~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~------- 368 (528)
T 4b8j_A 298 P--SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI------- 368 (528)
T ss_dssp S--CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHH-------
T ss_pred C--ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHH-------
Confidence 4 58899999999988765 24688899999888 899999999999877543221111000
Q ss_pred CChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC------------Cc
Q psy10052 302 IPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD------------SD 369 (500)
Q Consensus 302 ~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~------------~~ 369 (500)
....++.|+.++.+.++.+|..++++|+++.. ..
T Consensus 369 ----------------------------------~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 414 (528)
T 4b8j_A 369 ----------------------------------NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEG 414 (528)
T ss_dssp ----------------------------------HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred ----------------------------------HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC
Confidence 01235555666655566666666666665532 24
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------------------ccHHHHHHHhhcCCCHhHHHHHHHHHH
Q psy10052 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------------------KSSISILEKYAQDPVKEVSETCYLALK 427 (500)
Q Consensus 370 ~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 427 (500)
.++.|+.++.+. ++.++..++.+|.++-. .+.++.|..+.+++++.++..|...|.
T Consensus 415 ~i~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 415 CIKPLCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp CHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677788888765 67888888888776621 134567778888999999999999999
Q ss_pred Hhhh
Q psy10052 428 RIQF 431 (500)
Q Consensus 428 ~l~~ 431 (500)
++-.
T Consensus 493 ~~~~ 496 (528)
T 4b8j_A 493 AYWM 496 (528)
T ss_dssp HHCC
T ss_pred HHCC
Confidence 8754
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=8.2e-19 Score=179.88 Aligned_cols=332 Identities=13% Similarity=0.126 Sum_probs=228.0
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCC------------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKD------------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----- 100 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~------------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----- 100 (500)
..++.|++.|.++++.+|..|++.|..+-. ...++.|+++|.+++ ++.+|..|+++|+.+..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHH
Confidence 468899999999999999999999997621 247899999998863 68999999999999875
Q ss_pred ------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCH
Q psy10052 101 ------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL 174 (500)
Q Consensus 101 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~ 174 (500)
.+.++.|+.+++++++.||..|+++|+++..........+.. ...++.|+.++.+ .+.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--------------~~~l~~L~~ll~~--~~~ 229 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ--------------CNAMEPILGLFNS--NKP 229 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------------TTCHHHHHHGGGS--CCH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH--------------cCcHHHHHHHhcc--CCH
Confidence 256899999999999999999999999997532110000000 2357888888865 455
Q ss_pred HHHHHHHHHHHcCCC-----------hhhHHHHHhhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhh
Q psy10052 175 FMRYKAMFKLRDINS-----------VESTLALTEGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALE 232 (500)
Q Consensus 175 ~~r~~A~~~L~~~~~-----------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~ 232 (500)
.++..++.+|..+.. ...++.|..++.++++.++..++.+|+.+.. .+.++.|+.++.
T Consensus 230 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 677778777776432 1467778888877778888888887776643 256677777776
Q ss_pred ccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCC
Q psy10052 233 DQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKM 301 (500)
Q Consensus 233 ~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~ 301 (500)
+ .++.++..++++|+.+... ++++.|..++.++++.+|..++++|+.+........+...
T Consensus 310 ~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~------- 380 (530)
T 1wa5_B 310 H--ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI------- 380 (530)
T ss_dssp C--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-------
T ss_pred C--CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-------
Confidence 5 3567777777777766532 3566677777777777777777777765433221110000
Q ss_pred CChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccC---C-----------
Q psy10052 302 IPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMK---D----------- 367 (500)
Q Consensus 302 ~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~---~----------- 367 (500)
....++.|+.+|.+.++.+|..++++|+++. .
T Consensus 381 ----------------------------------~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~ 426 (530)
T 1wa5_B 381 ----------------------------------DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 426 (530)
T ss_dssp ----------------------------------HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred ----------------------------------HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 0123455555555555666666666665552 1
Q ss_pred CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------------------ccHHHHHHHhhcCCCHhHHHHHHHH
Q psy10052 368 SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------------------KSSISILEKYAQDPVKEVSETCYLA 425 (500)
Q Consensus 368 ~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------------------~~~~~~L~~~l~d~~~~vr~~A~~a 425 (500)
...++.|+.++.+. ++.+|..++.+|.++-. .+.++.|..+..++++.|+..|...
T Consensus 427 ~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~i 504 (530)
T 1wa5_B 427 QGCIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504 (530)
T ss_dssp TTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 12566777777655 67777777777765421 1346677888899999999999999
Q ss_pred HHHhhh
Q psy10052 426 LKRIQF 431 (500)
Q Consensus 426 L~~l~~ 431 (500)
|.++-.
T Consensus 505 l~~~~~ 510 (530)
T 1wa5_B 505 IETYFG 510 (530)
T ss_dssp HHHHSS
T ss_pred HHHHCC
Confidence 988754
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.85 E-value=5.3e-19 Score=177.48 Aligned_cols=256 Identities=16% Similarity=0.149 Sum_probs=207.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcC----Cc---------chHHHHHHHccCC-CHHHHHHHHHHHHccCC-----
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIG----GK---------TAIQCISEAFADE-SALLKHELAYCLGQMKD----- 67 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~----~~---------~~~~~L~~~l~~~-~~~vR~~a~~~L~~~~~----- 67 (500)
++.|++.|.+++.. +|..|...|.++. .+ ..++.|++.|+++ ++.+|..|+++|+.+..
T Consensus 22 l~~l~~~l~s~~~~--~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFSKSPE--QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHHSSCHH--HHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 78899999988875 9999999998751 21 5789999999977 89999999999998743
Q ss_pred ------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q psy10052 68 ------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQD-PVKEVSETCYLALKRI 129 (500)
Q Consensus 68 ------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~ 129 (500)
...++.|+++|+++ ++.+|..|+++|+.+... +.++.|+.++++ +++.+|..|+++|+++
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 46789999999998 899999999999998642 468899999985 7899999999999998
Q ss_pred chhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh-----------hhHHHHHh
Q psy10052 130 QFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV-----------ESTLALTE 198 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~-----------~~i~~l~~ 198 (500)
....... ...... ...++.|+..+.+ .+..++..++.+|+.+... ..++.++.
T Consensus 178 ~~~~~~~-------------~~~~~~-~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 241 (450)
T 2jdq_A 178 CRGKSPP-------------PEFAKV-SPCLNVLSWLLFV--SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241 (450)
T ss_dssp HCCSSSC-------------CCGGGT-GGGHHHHHHHTTC--CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHH
T ss_pred hCCCCCC-------------CCHHHH-HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHH
Confidence 7422000 000000 4568999999964 4567899999998886542 47899999
Q ss_pred hccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-----------chH
Q psy10052 199 GLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALEDQTQNEMVRHECAEALGAIAT-----------PEC 256 (500)
Q Consensus 199 ~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~~ 256 (500)
++.++++.+|..++.+|+.+.. .+.++.|..++.+ .++.+|..|+++|+++.. .+.
T Consensus 242 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~ 319 (450)
T 2jdq_A 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDANI 319 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999999999999988763 3678999999987 468999999999998874 246
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhhccc
Q psy10052 257 YDVLRKYLSDEKVVVRQSCEIALDMCDY 284 (500)
Q Consensus 257 ~~~L~~~l~~~~~~vr~~a~~al~~l~~ 284 (500)
++.|..++.++++.+|..++.+|+.+..
T Consensus 320 l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 320 FPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 7888899999999999999999987754
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.84 E-value=1.8e-18 Score=177.41 Aligned_cols=329 Identities=15% Similarity=0.174 Sum_probs=246.7
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC------------cchHHHHHHHccCC-CHHHHHHHHHHHHccCC----
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGG------------KTAIQCISEAFADE-SALLKHELAYCLGQMKD---- 67 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~------------~~~~~~L~~~l~~~-~~~vR~~a~~~L~~~~~---- 67 (500)
..++.|++.|.+++.. .|..|+..|.++.. ...++.|+++|.++ ++.+|..|+|+|+.+..
T Consensus 87 ~~i~~lv~~L~s~~~~--~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQ--EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp CCHHHHHHHHSCSSHH--HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHcCCCHH--HHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3578899999988764 99999999998632 14789999999987 89999999999998854
Q ss_pred -------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 68 -------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 68 -------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
..+++.|+.+|.++ ++.+|..|+++|+.+... +.++.|+.++.++++.++..|+++|+++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 45789999999988 899999999999998642 4689999999999999999999999998
Q ss_pred chhccchhhccccCcCCCCCCCCCC-CCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh-----------hhHHHHH
Q psy10052 130 QFVTEEDKQKDTGNIYGSVDPTPPL-DDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV-----------ESTLALT 197 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~-----------~~i~~l~ 197 (500)
...... .... .....++.|+.++.+ .+..++..++.+|+.+... ..++.|+
T Consensus 243 ~~~~~~---------------~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 243 CRGKKP---------------QPDWSVVSQALPTLAKLIYS--MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp HCCSSS---------------CCCHHHHGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred hCCCCC---------------CCcHHHHHhHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 743200 0000 003468999999965 4567898888888876431 5678999
Q ss_pred hhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-----------ch
Q psy10052 198 EGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALEDQTQNEMVRHECAEALGAIAT-----------PE 255 (500)
Q Consensus 198 ~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~ 255 (500)
.+|.++++.+|..++.+|+.+.. .+.++.|+.++.+. ++.+|..|+++|+.+.. .+
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~ 383 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVIDAN 383 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999999999998863 36788999999874 68999999999998874 24
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhhccccchh---HhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy10052 256 CYDVLRKYLSDEKVVVRQSCEIALDMCDYENSV---ELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLK 332 (500)
Q Consensus 256 ~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~ 332 (500)
+++.|..++.++++.++..++++|+.+...... ...+ +.
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--------------------------------------l~ 425 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY--------------------------------------LV 425 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHH--------------------------------------HH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHH--------------------------------------HH
Confidence 578888999989999999999999866432111 0000 00
Q ss_pred hcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccC----------------------CCccHHHHHHHhhcCCCCHHHHHH
Q psy10052 333 NIGGKTAIQCISEAFADKSALLKHELAYCLGQMK----------------------DSDANDILRQVLEDKSQEPMVRHE 390 (500)
Q Consensus 333 ~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~----------------------~~~~~~~L~~~l~~~~~~~~vR~~ 390 (500)
. ...++.|+.++.++++.++..++++|..+. ....++.|..+..++ +..++..
T Consensus 426 ~---~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~--~~~v~~~ 500 (530)
T 1wa5_B 426 S---QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE--NDKIYEK 500 (530)
T ss_dssp H---TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS--CHHHHHH
T ss_pred H---CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC--CHHHHHH
Confidence 0 124555555555555555555555554431 123466777777666 7889999
Q ss_pred HHHHHhhcC
Q psy10052 391 AAEALGAIG 399 (500)
Q Consensus 391 a~~aL~~~~ 399 (500)
|..+|.++-
T Consensus 501 a~~il~~~~ 509 (530)
T 1wa5_B 501 AYKIIETYF 509 (530)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHC
Confidence 988887654
No 24
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=8.7e-18 Score=182.18 Aligned_cols=432 Identities=18% Similarity=0.148 Sum_probs=287.1
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHccCCCHHHHHHHHHHHHccCC--------
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGG----------KTAIQCISEAFADESALLKHELAYCLGQMKD-------- 67 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-------- 67 (500)
-++.|.+.|++++.. +|..|+..|..+.. +..++.|.+.+.|+++.+|..++++|+.+..
T Consensus 175 il~~l~~~l~~~~~~--vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPK--IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHTTTTTCSSHH--HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 345667777877764 99999999987642 1466777788889999999999999987632
Q ss_pred --CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh------------hhHHHHHHHh-----------cC---------
Q psy10052 68 --SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------------SSISILEKYA-----------QD--------- 113 (500)
Q Consensus 68 --~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~------------~~~~~L~~~l-----------~d--------- 113 (500)
...++.+..++++. ++.||..|++.+..+... ..+|.+...+ .|
T Consensus 253 ~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd 330 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330 (852)
T ss_dssp GHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence 23466777788887 799999999999888642 3456666665 34
Q ss_pred --CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC--
Q psy10052 114 --PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS-- 189 (500)
Q Consensus 114 --~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~-- 189 (500)
.+..||..|..+|+.+......... +..++.+.+.+.+ .++.+|..|+.+++.+..
T Consensus 331 ~~~~~~vr~~a~~~L~~la~~~~~~~~------------------~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~~ 390 (852)
T 4fdd_A 331 TISDWNLRKCSAAALDVLANVYRDELL------------------PHILPLLKELLFH--HEWVVKESGILVLGAIAEGC 390 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHGGGGH------------------HHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTTT
T ss_pred ccccchHHHHHHHHHHHHHHhccHHHH------------------HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcc
Confidence 3456899999999988754321111 2345666666744 467899999999999865
Q ss_pred --------hhhHHHHHhhccCCCHhHHHHHHHHHhccCC-------C----CcHHHHHHHhhccCCCHHHHHHHHHHHhh
Q psy10052 190 --------VESTLALTEGLSHGSSLYRHEIAFVLGQMQN-------P----SSIPALTSALEDQTQNEMVRHECAEALGA 250 (500)
Q Consensus 190 --------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-------~----~~i~~L~~~l~~~~~~~~vr~~a~~aL~~ 250 (500)
+..++.+...++|+++.||..+++++|++.. . ..++.|...+.+ .++.||..|+++|+.
T Consensus 391 ~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d--~~~~vr~~a~~aL~~ 468 (852)
T 4fdd_A 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD--SNKRVQEAACSAFAT 468 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC--SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3577888889999999999999999987652 1 245666777766 468999999999986
Q ss_pred cCC----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHh---HHHHhhhccCCCChHHHHHHH---HHh
Q psy10052 251 IAT----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL---QYADTLCKFKMIPEEKILLIG---QVL 314 (500)
Q Consensus 251 ~~~----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~l~---~~l 314 (500)
+.. +..++.|...+++.+......+..+++.+........ .+. ...++.+. ..+
T Consensus 469 l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~----------~~l~p~l~~~~~~l 538 (852)
T 4fdd_A 469 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI----------QMLMPPLIQKWNML 538 (852)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH----------HHHHHHHHHHHHHS
T ss_pred HHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH----------HHHHHHHHHHHHhc
Confidence 642 2345666666665555454455556654431111000 010 11122333 233
Q ss_pred hcCCCCHHHHHHHHHHHHhcC---Chh-------hHHHHHHHh-----------------cCCCHHHHHHHHHHHhccC-
Q psy10052 315 KDSSKPLKERFRALFTLKNIG---GKT-------AIQCISEAF-----------------ADKSALLKHELAYCLGQMK- 366 (500)
Q Consensus 315 ~~~~~~~~~r~~a~~~L~~~~---~~~-------~~~~L~~~l-----------------~~~~~~vr~~a~~aL~~l~- 366 (500)
.+.++.. | .++++++.+. +.. ..+.++..+ ..++..++..++.+++.+.
T Consensus 539 ~d~~~~~--~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~ 615 (852)
T 4fdd_A 539 KDEDKDL--F-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE 615 (852)
T ss_dssp CTTCTTH--H-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHH
T ss_pred ccccHHH--H-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHH
Confidence 3444443 2 3444443222 111 222222222 1235667877777766542
Q ss_pred -----------CCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHHHH
Q psy10052 367 -----------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLA 425 (500)
Q Consensus 367 -----------~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~a 425 (500)
.+..++.+..++.++ ++.+|..+...++.+.. +..++.+.+.+++.++.+|..|+++
T Consensus 616 ~l~~~~~~~~~~~~~~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~a 693 (852)
T 4fdd_A 616 GLGGNIEQLVARSNILTLMYQCMQDK--MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWA 693 (852)
T ss_dssp HHGGGGHHHHHTCCHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred HHhHhHHHHhcCCcHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence 135678888888776 69999999999987631 3466777788888889999999999
Q ss_pred HHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC--ChhhH
Q psy10052 426 LKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN--SVEST 493 (500)
Q Consensus 426 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g--~~~~~ 493 (500)
++.+....+.... | .-...++.|.+++.+.+....++..|+.++|++| .++.+
T Consensus 694 lg~i~~~~~~~~~-----------p----~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~ 748 (852)
T 4fdd_A 694 IGEISIQMGIEMQ-----------P----YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748 (852)
T ss_dssp HHHHHHHHGGGGG-----------G----GTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhhHhHH-----------H----HHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHh
Confidence 9998654432111 1 1247899999999766556679999999999997 44444
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.82 E-value=1.5e-17 Score=170.46 Aligned_cols=363 Identities=15% Similarity=0.150 Sum_probs=243.0
Q ss_pred CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC--C----------hhhHHHHHHHhcCCC-HHHHHHHHHHHHHhchhcc
Q psy10052 68 SDANDILRQVLEDKSQEPMVRHEAAEALGAIG--D----------KSSISILEKYAQDPV-KEVSETCYLALKRIQFVTE 134 (500)
Q Consensus 68 ~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~--~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~~~ 134 (500)
...++.|++.|.++ ++.+|..|+++|+.+. . .+.+|.|++++++++ +.+|..|+++|+++.....
T Consensus 73 ~~~l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 73 LESLPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp --CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 34578889988877 7889999999888762 1 146888888888876 8899999999988874211
Q ss_pred chhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHH
Q psy10052 135 EDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFV 214 (500)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~a 214 (500)
.....+.. .+.++.|+.++.+ .+..+|..|+.+|+++.. .++..|....
T Consensus 151 ~~~~~~~~--------------~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~-------------~~~~~~~~i~-- 199 (528)
T 4b8j_A 151 ENTKVVID--------------HGAVPIFVKLLGS--SSDDVREQAVWALGNVAG-------------DSPKCRDLVL-- 199 (528)
T ss_dssp HHHHHHHH--------------TTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHH-------------TCHHHHHHHH--
T ss_pred HHHHHHHh--------------CCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhC-------------CChhhHHHHH--
Confidence 00000000 1234445555533 233344444444444321 0111111111
Q ss_pred HhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccc
Q psy10052 215 LGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATP----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDY 284 (500)
Q Consensus 215 L~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~ 284 (500)
..++++.|+.++.+. .++.++..++++|+.+... .+++.|..++.++++.++..++.+|+.+..
T Consensus 200 -----~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 200 -----ANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp -----HTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred -----HCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 125688888888432 4678888888888876542 478999999999999999999999998876
Q ss_pred cchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCC-CH
Q psy10052 285 ENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADK-SA 352 (500)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~-~~ 352 (500)
......+.... ...++.|..++.+.+ ..++..|+.+|+.+.. ..+++.|+.+|.+. ++
T Consensus 274 ~~~~~~~~~~~--------~g~v~~Lv~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 343 (528)
T 4b8j_A 274 GTNDKIQAVIE--------AGVCPRLVELLLHPS--PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 343 (528)
T ss_dssp SCHHHHHHHHH--------TTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred CCHHHHHHHHH--------cCHHHHHHHHHcCCC--hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence 54432221111 124668888888776 4689999999998764 34678899999988 99
Q ss_pred HHHHHHHHHHhccCCC-----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC------------ccHHHHHHH
Q psy10052 353 LLKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD------------KSSISILEK 409 (500)
Q Consensus 353 ~vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~------------~~~~~~L~~ 409 (500)
.++..++++|+++... ..++.|+.++.+. ++.+|..|+.+|+++.. ...++.|..
T Consensus 344 ~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~ 421 (528)
T 4b8j_A 344 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421 (528)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 9999999999998632 4679999999876 79999999999998743 256788999
Q ss_pred hhcCCCHhHHHHHHHHHHHhhhhhhcccccc--cCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 410 YAQDPVKEVSETCYLALKRIQFVTEEDKQKD--TGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 410 ~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
++.++++.++..++.+|..+-.......... ..+.+.. .......++.+..+..+ .+..++..|...+.++
T Consensus 422 lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~l~~L~~~--~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 422 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ-----MIDEAEGLEKIENLQSH--DNNEIYEKAVKILEAY 494 (528)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHH-----HHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHH-----HHHHCCcHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 9999999999999999999865432211000 0000000 00112457777776644 4445899999988877
Q ss_pred C
Q psy10052 488 N 488 (500)
Q Consensus 488 g 488 (500)
-
T Consensus 495 ~ 495 (528)
T 4b8j_A 495 W 495 (528)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=1.9e-17 Score=179.46 Aligned_cols=416 Identities=14% Similarity=0.069 Sum_probs=265.1
Q ss_pred HhHHHHHHhh---cCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHc---cCCCHHHHHHHHHHHHccCC----------
Q psy10052 5 EKILLIGQVL---KDSSKPLKERFRALFTLKNIGG-KTAIQCISEAF---ADESALLKHELAYCLGQMKD---------- 67 (500)
Q Consensus 5 ~~~~~L~~~L---~~~~~~~~~R~~A~~~L~~~~~-~~~~~~L~~~l---~~~~~~vR~~a~~~L~~~~~---------- 67 (500)
..+.+|.+.| .++|.. .|..|-..|.+... +.....|...+ .+.++.+|..|+-.|.+.-.
T Consensus 10 ~~~~~l~~~l~~~~s~d~~--~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~ 87 (852)
T 4fdd_A 10 QGLQQILQLLKESQSPDTT--IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHHHHTCSCHH--HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH
T ss_pred hhHHHHHHHHHHHhCcCHH--HHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH
Confidence 5666676666 466654 99999999998865 44445566655 46789999999988875421
Q ss_pred -CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 68 -SDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 68 -~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
....+.|++.|.++ ++.||..++.+++.+. +++.++.|...++++++.+|..+..+|+.+.........
T Consensus 88 ~~~ik~~ll~~l~~~--~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~- 164 (852)
T 4fdd_A 88 TDFIKSECLNNIGDS--SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD- 164 (852)
T ss_dssp HHHHHHHHHTTTTCS--SHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH-
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc-
Confidence 12346667778877 7899999999999873 567899999999999999999999999998754321100
Q ss_pred cccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC----------hhhHHHHHhhccCCCHhHHH
Q psy10052 140 DTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS----------VESTLALTEGLSHGSSLYRH 209 (500)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~----------~~~i~~l~~~L~~~~~~vr~ 209 (500)
... ....+ ...++.+.+.+.+ .+..+|..|+.++..+-. +..++.+...+.++++.||.
T Consensus 165 --~~~-----~~~~~--~~il~~l~~~l~~--~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~ 233 (852)
T 4fdd_A 165 --SDV-----LDRPL--NIMIPKFLQFFKH--SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRK 233 (852)
T ss_dssp --HCS-----SSSCH--HHHHHHHTTTTTC--SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHH
T ss_pred --hhh-----hcchH--HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 000 00000 2235555566643 456788888888876542 14566677777778888888
Q ss_pred HHHHHHhccCC----------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCch------------HHHHHHHhhcCC
Q psy10052 210 EIAFVLGQMQN----------PSSIPALTSALEDQTQNEMVRHECAEALGAIATPE------------CYDVLRKYLSDE 267 (500)
Q Consensus 210 ~a~~aL~~~~~----------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~------------~~~~L~~~l~~~ 267 (500)
.++++|+.+.. +..++.+...+.+ .++.||..|++.+..+.... .++.+...+...
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~ 311 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYS 311 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88887766532 1234445555554 35677777777776665421 122222222211
Q ss_pred cHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-------hhhH
Q psy10052 268 KVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-------KTAI 340 (500)
Q Consensus 268 ~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-------~~~~ 340 (500)
+..... +. ....+. .--.+....|.+|..|..+|+.+.. +..+
T Consensus 312 e~d~~~-----~~-------------------~d~~ed------~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~ 361 (852)
T 4fdd_A 312 DIDIIL-----LK-------------------GDVEGG------SGGDDTISDWNLRKCSAAALDVLANVYRDELLPHIL 361 (852)
T ss_dssp HHHHHH-----HH-------------------C------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HhHHHH-----hc-------------------CCcccc------cccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 110000 00 000000 0000000234467777776664432 3456
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhccCCC----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------
Q psy10052 341 QCISEAFADKSALLKHELAYCLGQMKDS----------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD---------- 400 (500)
Q Consensus 341 ~~L~~~l~~~~~~vr~~a~~aL~~l~~~----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~---------- 400 (500)
+.+.+.+.++++.+|.+++.++|.+... ..++.|...+.|+ ++.||.+++.+|+++..
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 439 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KALVRSITCWTLSRYAHWVVSQPPDTY 439 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTHHHHHHSCTTTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 6777788889999999999999998752 3677888888877 79999999999998753
Q ss_pred -ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHH
Q psy10052 401 -KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYK 479 (500)
Q Consensus 401 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~ 479 (500)
...++.|...+.|.++.||..|+++|+.+......... | ..+..++.|...+.+.+ ......
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~-----------~----~l~~ll~~L~~~l~~~~--~~~~~~ 502 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV-----------P----YLAYILDTLVFAFSKYQ--HKNLLI 502 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG-----------G----GHHHHHHHHHHHHHHCC--HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH-----------h----HHHHHHHHHHHHHHHhC--hHHHHH
Confidence 24567788888899999999999999998765432111 0 12467778888775332 223334
Q ss_pred HHHHhHhc
Q psy10052 480 AMFKLRDI 487 (500)
Q Consensus 480 a~~al~~~ 487 (500)
+..+++.+
T Consensus 503 ~~~ai~~l 510 (852)
T 4fdd_A 503 LYDAIGTL 510 (852)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555555
No 27
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=2.2e-17 Score=167.95 Aligned_cols=331 Identities=13% Similarity=0.146 Sum_probs=237.2
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHcc----CC--------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQM----KD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 100 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~----~~--------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------ 100 (500)
.++.+++.+.++|+..+..|+..+.++ .+ ..++|.|+++|+..+ ++.++..|+++|+.+..
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHH
Confidence 588999999999999999999888765 22 236899999998664 68999999999999842
Q ss_pred -----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCc---
Q psy10052 101 -----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENE--- 172 (500)
Q Consensus 101 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~--- 172 (500)
.+++|.|+++|+++++.||..|+++|+++..+.......+.. .+.++.|+.++.+.+.
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~--------------~G~i~~Ll~lL~~~~~~~~ 202 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK--------------HGAIDPLLALLAVPDLSTL 202 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------------TTCHHHHHHHTCSSCGGGS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--------------cCChHHHHHHHHhccchhh
Confidence 257899999999999999999999999997543211100000 3458889999965432
Q ss_pred CHHHHHHHHHHHHcCC---C--------hhhHHHHHhhccCCCHhHHHHHHHHHhccC-----------CCCcHHHHHHH
Q psy10052 173 DLFMRYKAMFKLRDIN---S--------VESTLALTEGLSHGSSLYRHEIAFVLGQMQ-----------NPSSIPALTSA 230 (500)
Q Consensus 173 ~~~~r~~A~~~L~~~~---~--------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~-----------~~~~i~~L~~~ 230 (500)
.......+..++.... . ..+++.|..++.++++.++..++++|..+. ..+.++.|+++
T Consensus 203 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 203 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence 2233444555555421 1 246788889999999999999999998765 24578889999
Q ss_pred hhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhcc
Q psy10052 231 LEDQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF 299 (500)
Q Consensus 231 l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~ 299 (500)
+.+ .++.++..++.+|+++... ++++.|..++.+++..++..++++|+.+............
T Consensus 283 L~~--~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~----- 355 (510)
T 3ul1_B 283 LGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV----- 355 (510)
T ss_dssp HTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH-----
T ss_pred hcC--CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-----
Confidence 987 4578999999999887542 3456667788888889999999998876544322111000
Q ss_pred CCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC------------
Q psy10052 300 KMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD------------ 367 (500)
Q Consensus 300 ~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~------------ 367 (500)
....++.|+.++.+.+..+|..++++|+++..
T Consensus 356 ------------------------------------~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 356 ------------------------------------NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp ------------------------------------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ------------------------------------hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 12346666666766777777777777665521
Q ss_pred CccHHHHHHHhhcCCCCHHHHHHHHHHHhhc-------CC----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 368 SDANDILRQVLEDKSQEPMVRHEAAEALGAI-------GD----------KSSISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 368 ~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~-------~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
..+++.|.+++... ++.++..++.+|.++ +. .+.++.|..+..+++..|+..|..-|.+.
T Consensus 400 ~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 400 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 24677788888765 678888888877654 11 13456777788889999999999998876
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.81 E-value=5.1e-18 Score=176.33 Aligned_cols=386 Identities=16% Similarity=0.126 Sum_probs=267.4
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcch----HHHHHHHccCCCHHHHHHHHHHHHccC--CC----ccHHHHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTA----IQCISEAFADESALLKHELAYCLGQMK--DS----DANDILR 75 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~----~~~L~~~l~~~~~~vR~~a~~~L~~~~--~~----~~~~~L~ 75 (500)
.++.|.+.|+|+++. +|..|++.|+.++.++. ++.+.++|.|+++.||..|+.+++.+. .+ ..++.+.
T Consensus 108 ~in~l~kDL~~~n~~--vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~ 185 (618)
T 1w63_A 108 MTNCIKNDLNHSTQF--VQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK 185 (618)
T ss_dssp HHHHHHHHHSCSSSH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTT
T ss_pred HHHHHHHhcCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 567888899999885 99999999999997765 677778889999999999999998773 22 3456667
Q ss_pred HHhhccCCCHHHHHHHHHHHHhcCChh---------hHHHHHHHhc---------------CCCHHHHHHHHHHHHHhch
Q psy10052 76 QVLEDKSQEPMVRHEAAEALGAIGDKS---------SISILEKYAQ---------------DPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 76 ~~L~~~~~d~~vr~~a~~aL~~~~~~~---------~~~~L~~~l~---------------d~~~~vr~~a~~aL~~~~~ 131 (500)
++|.|. |+.|+..|+.+|+.+.... .+|.|...|. .+++..+...+..|+.++.
T Consensus 186 ~lL~D~--d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 186 NLLNEK--NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TSTTCC--CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHhCCC--CHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 788887 8999999999999987532 2455666554 2578898899999988874
Q ss_pred hccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhc----CCCcCHHHHHHHHHHHHcCCChh-----hHHHHHhhccC
Q psy10052 132 VTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILL----NENEDLFMRYKAMFKLRDINSVE-----STLALTEGLSH 202 (500)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~----d~~~~~~~r~~A~~~L~~~~~~~-----~i~~l~~~L~~ 202 (500)
...... +...+.|...+. ..+.+..+...++.++..+.... ++..|..++.+
T Consensus 264 ~~~~~~-------------------~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~ 324 (618)
T 1w63_A 264 NDDDSS-------------------EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLN 324 (618)
T ss_dssp TCHHHH-------------------HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHH-------------------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 321100 112333444432 12334568888999998876532 56788888888
Q ss_pred CCHhHHHHHHHHHhccCC--C----CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCch----HHHHHHHhhcCCcHHHH
Q psy10052 203 GSSLYRHEIAFVLGQMQN--P----SSIPALTSALEDQTQNEMVRHECAEALGAIATPE----CYDVLRKYLSDEKVVVR 272 (500)
Q Consensus 203 ~~~~vr~~a~~aL~~~~~--~----~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~vr 272 (500)
+++.+|..++.+|+.+.. + ...+.+..++.| .+..+|..+++.|..+.+.. .++.|..++.+.+..+|
T Consensus 325 ~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d--~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r 402 (618)
T 1w63_A 325 NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKD--LDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFK 402 (618)
T ss_dssp SSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGS--SCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHH
T ss_pred CCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccC--CChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999988762 2 234567778877 46899999999999888764 67778888888899999
Q ss_pred HHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHH---HHHH-HHHhcCC--hhhHHHHHHH
Q psy10052 273 QSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERF---RALF-TLKNIGG--KTAIQCISEA 346 (500)
Q Consensus 273 ~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~---~a~~-~L~~~~~--~~~~~~L~~~ 346 (500)
..++.+++.+.....+. ..+.++.+.+++.+.... ++. ..+. .+.+... ..++..|...
T Consensus 403 ~~~v~~I~~la~k~~~~-------------~~~~v~~ll~lL~~~~~~--v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~ 467 (618)
T 1w63_A 403 ADCASGIFLAAEKYAPS-------------KRWHIDTIMRVLTTAGSY--VRDDAVPNLIQLITNSVEMHAYTVQRLYKA 467 (618)
T ss_dssp HHHHHHHHHHHHSSCCC-------------HHHHHHHHHHHHHHTGGG--SCSSHHHHHHHHHHHSCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-------------HHHHHHHHHHHHHhccch--hHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Confidence 99999999876543221 122334444444433210 011 1111 1111111 2356677777
Q ss_pred hcC--CCHHHHHHHHHHHhccCCC-----------------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC------c
Q psy10052 347 FAD--KSALLKHELAYCLGQMKDS-----------------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD------K 401 (500)
Q Consensus 347 l~~--~~~~vr~~a~~aL~~l~~~-----------------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~------~ 401 (500)
+.+ ....+...++|.+|+++.. .+++.|..++.+..+++.+|..++.++.++.. +
T Consensus 468 l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~ 547 (618)
T 1w63_A 468 ILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVN 547 (618)
T ss_dssp HHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred HhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHH
Confidence 764 2333444689999999731 24566777675434589999999999988753 2
Q ss_pred cHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 402 SSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 402 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
.....|..+..|.|.+||..|...+.-+..
T Consensus 548 ~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 548 RIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 344555566678999999999999888764
No 29
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.78 E-value=1.1e-16 Score=163.61 Aligned_cols=332 Identities=12% Similarity=0.135 Sum_probs=238.3
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHcc----CC--------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQM----KD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----- 100 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~----~~--------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----- 100 (500)
..++.+++.+.++|+..+..|+..+..+ .+ ...+|.|+++|...+ ++.++..|+++|+.+..
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence 3578899999999999999998888764 11 346899999997663 68999999999998743
Q ss_pred ------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCc--
Q psy10052 101 ------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENE-- 172 (500)
Q Consensus 101 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~-- 172 (500)
.+++|.|+.++.++++.|+..|+++|+++..+.......+.. .+.++.|+.++.+.+.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~--------------~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK--------------HGAIDPLLALLAVPDLST 220 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------------TTCHHHHHHTTCSSCGGG
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH--------------cCCcHHHHHHHhccchhH
Confidence 257899999999999999999999999997543211000000 3458889998865432
Q ss_pred -CHHHHHHHHHHHHcC---CC--------hhhHHHHHhhccCCCHhHHHHHHHHHhccC-----------CCCcHHHHHH
Q psy10052 173 -DLFMRYKAMFKLRDI---NS--------VESTLALTEGLSHGSSLYRHEIAFVLGQMQ-----------NPSSIPALTS 229 (500)
Q Consensus 173 -~~~~r~~A~~~L~~~---~~--------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~-----------~~~~i~~L~~ 229 (500)
.......+..++... .. ..+++.|..++.++++.++..++++|..+. ..+.++.|+.
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 223344455555442 11 246788999999999999999999987654 3467899999
Q ss_pred HhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhc
Q psy10052 230 ALEDQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCK 298 (500)
Q Consensus 230 ~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~ 298 (500)
++.+ .++.++..++.+|+.+... ++++.|..++.++++.++..++++|+.+...........
T Consensus 301 lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v----- 373 (529)
T 3tpo_A 301 LLGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV----- 373 (529)
T ss_dssp HHTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHH-----
T ss_pred HhcC--CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHH-----
Confidence 9987 4688999999999887532 357788889999999999999999987654432211100
Q ss_pred cCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------
Q psy10052 299 FKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD----------- 367 (500)
Q Consensus 299 ~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~----------- 367 (500)
.....++.|+.++.+.+..+|..|+++|+++..
T Consensus 374 ------------------------------------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~ 417 (529)
T 3tpo_A 374 ------------------------------------VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLV 417 (529)
T ss_dssp ------------------------------------HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ------------------------------------HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 012346666677777777777777777665521
Q ss_pred -CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC-------Cc----------cHHHHHHHhhcCCCHhHHHHHHHHHHHh
Q psy10052 368 -SDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------DK----------SSISILEKYAQDPVKEVSETCYLALKRI 429 (500)
Q Consensus 368 -~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~-------~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 429 (500)
..+++.|++++... ++.++..++.+|.++- .. +.+..|..+..+++..|+..|..-|.+.
T Consensus 418 ~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 418 HCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23677888888765 6888888888876651 11 2456677777889999999999988875
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.77 E-value=1.5e-15 Score=157.73 Aligned_cols=422 Identities=14% Similarity=0.074 Sum_probs=254.8
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCC--cchHHHHHHHccCCCHHHHHHHHHHHHccCC--Cc----cHHHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKN---IGG--KTAIQCISEAFADESALLKHELAYCLGQMKD--SD----ANDIL 74 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~---~~~--~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--~~----~~~~L 74 (500)
.+..+.+.|++++.. .|..++.-|-- .|. .......++++.+++...|+-.--.+..+.+ ++ ++..|
T Consensus 35 e~~~ir~~l~~~~~~--~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l 112 (618)
T 1w63_A 35 ECAAIRSSFREEDNT--YRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCI 112 (618)
T ss_dssp HHHHHHHHHTTTCTT--THHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHH--HHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 455666777777765 66666665554 343 3456677778888888777766666666543 22 35667
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhcCChhh----HHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCC
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAIGDKSS----ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDP 150 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 150 (500)
.+-|.++ ++.+|..|+++||.++.++. ++.+.+++.|+++.||..|+.++.++....... .
T Consensus 113 ~kDL~~~--n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~-v------------ 177 (618)
T 1w63_A 113 KNDLNHS--TQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL-M------------ 177 (618)
T ss_dssp HHHHSCS--SSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-G------------
T ss_pred HHhcCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-H------------
Confidence 7777777 78899999999999988765 677788888999999999999998876422110 0
Q ss_pred CCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChh---------hHHHHHhhcc---------------CCCHh
Q psy10052 151 TPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVE---------STLALTEGLS---------------HGSSL 206 (500)
Q Consensus 151 ~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~---------~i~~l~~~L~---------------~~~~~ 206 (500)
+..++.+.+.+.| .++.++..|+.+|..+.... .++.+...|. .+++.
T Consensus 178 ------~~~~~~l~~lL~D--~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 178 ------EMFLPATKNLLNE--KNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp ------GGGGGGTTTSTTC--CCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred ------HHHHHHHHHHhCC--CCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 2235555566643 46678888888887765421 2344444443 24677
Q ss_pred HHHHHHHHHhccCCC------CcHHHHHHHhhcc----CCCHHHHHHHHHHHhhcCCch-----HHHHHHHhhcCCcHHH
Q psy10052 207 YRHEIAFVLGQMQNP------SSIPALTSALEDQ----TQNEMVRHECAEALGAIATPE-----CYDVLRKYLSDEKVVV 271 (500)
Q Consensus 207 vr~~a~~aL~~~~~~------~~i~~L~~~l~~~----~~~~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~~~~~~v 271 (500)
.+..+++.|+.++.. ...+.|..++... +.+..|...++.++..+.... +.+.|..++.++++.+
T Consensus 250 ~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~v 329 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNI 329 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCch
Confidence 777788888777643 2334444444311 123567888888887776532 4667777788888888
Q ss_pred HHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChh----hHHHHHHHh
Q psy10052 272 RQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT----AIQCISEAF 347 (500)
Q Consensus 272 r~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~----~~~~L~~~l 347 (500)
|..++.+|+.+.......+ ......+...+.+++ ..+|..|+..|..+.++. .++.|...+
T Consensus 330 r~~aL~~L~~i~~~~p~~~-------------~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l 394 (618)
T 1w63_A 330 RYVALTSLLKTVQTDHNAV-------------QRHRSTIVDCLKDLD--VSIKRRAMELSFALVNGNNIRGMMKELLYFL 394 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------GGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHH-------------HHHHHHHHHHccCCC--hhHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 8888888876654322110 011224444555444 456777777777666543 444555566
Q ss_pred cCCCHHHHHHHHHHHhccCCC---c----------------------------------------cHHHHHHHhhcCCCC
Q psy10052 348 ADKSALLKHELAYCLGQMKDS---D----------------------------------------ANDILRQVLEDKSQE 384 (500)
Q Consensus 348 ~~~~~~vr~~a~~aL~~l~~~---~----------------------------------------~~~~L~~~l~~~~~~ 384 (500)
.+.+.++|..++.+++.+... . ++..|.+.+.+...+
T Consensus 395 ~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~ 474 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQ 474 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSC
T ss_pred HhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccccc
Confidence 666677777777776665321 1 334444444431112
Q ss_pred HHHHHHHHHHHhhcCC-----------------ccHHHHHHHhhc--CCCHhHHHHHHHHHHHhhhhhhcccccccCCCC
Q psy10052 385 PMVRHEAAEALGAIGD-----------------KSSISILEKYAQ--DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 445 (500)
Q Consensus 385 ~~vR~~a~~aL~~~~~-----------------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 445 (500)
..+...+++.||..+. ..+++.|..+++ ..++.||..+..++.++....
T Consensus 475 ~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~------------ 542 (618)
T 1w63_A 475 QPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRF------------ 542 (618)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhC------------
Confidence 2233346666666642 124455555553 456667777777776665421
Q ss_pred CCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 446 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
| .....+..+.+... .+.+..+|.+|.+.+.-+.
T Consensus 543 ----~----~~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 543 ----T----CTVNRIKKVVSIYG-SSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp ----S----SCHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred ----c----chHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHc
Confidence 1 11244445544443 5666779999999877754
No 31
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.77 E-value=1.1e-15 Score=159.61 Aligned_cols=316 Identities=18% Similarity=0.224 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHhcCC---hhhHHHHHHHhc---CCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcc
Q psy10052 85 PMVRHEAAEALGAIGD---KSSISILEKYAQ---DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVS 158 (500)
Q Consensus 85 ~~vr~~a~~aL~~~~~---~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (500)
.+.+..|..+||.|.. .+.+..|.++|. +.++.++..|+.+|+-+..... ..
T Consensus 372 ~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----------------------~~ 429 (963)
T 4ady_A 372 NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----------------------RD 429 (963)
T ss_dssp THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----------------------HH
T ss_pred hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----------------------HH
Confidence 5678889999998743 356778888886 6789999999999998864221 12
Q ss_pred cHHHHHHHhcCCCc------CHHHHHHHHHHHHcC----CChhhHHHHHhhccCCCHhHHHHHHHHHhcc----CCCCcH
Q psy10052 159 DINKLKEILLNENE------DLFMRYKAMFKLRDI----NSVESTLALTEGLSHGSSLYRHEIAFVLGQM----QNPSSI 224 (500)
Q Consensus 159 ~~~~L~~~l~d~~~------~~~~r~~A~~~L~~~----~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~----~~~~~i 224 (500)
.+..|.+.+.+++. ...+|..|+..|+-. +++++++.|.+.+.+++..++..++.+||.+ ++..++
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai 509 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI 509 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH
Confidence 46667777754330 245777777777763 3456777777777766666677777777765 455566
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHh--hcCCchHHHHHHHhhc-CCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCC
Q psy10052 225 PALTSALEDQTQNEMVRHECAEALG--AIATPECYDVLRKYLS-DEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKM 301 (500)
Q Consensus 225 ~~L~~~l~~~~~~~~vr~~a~~aL~--~~~~~~~~~~L~~~l~-~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~ 301 (500)
..|+..+.++ .+..+|+.++.+|| .++.+...+.+.+.+. +.++.+|..++.+++.-.
T Consensus 510 ~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAy------------------ 570 (963)
T 4ady_A 510 HDMFTYSQET-QHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAY------------------ 570 (963)
T ss_dssp HHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh------------------
Confidence 6666665443 34567777777777 4466666666655543 456666665555443100
Q ss_pred CChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHH-HHhcCCCHHHHHHHHHHHhc--cCCCccHHHHHHHh
Q psy10052 302 IPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCIS-EAFADKSALLKHELAYCLGQ--MKDSDANDILRQVL 378 (500)
Q Consensus 302 ~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~-~~l~~~~~~vr~~a~~aL~~--l~~~~~~~~L~~~l 378 (500)
...|+..+++.|+ .+.++.+..||..|+.+||. +++++.++.++..+
T Consensus 571 ------------------------------aGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 571 ------------------------------AGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp ------------------------------TTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred ------------------------------cCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 1345566677444 44567788999999999997 46778899999877
Q ss_pred hcCCCCHHHHHHHHHHHhhc----CCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCC
Q psy10052 379 EDKSQEPMVRHEAAEALGAI----GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPL 454 (500)
Q Consensus 379 ~~~~~~~~vR~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (500)
.+. .++.+|..++.|||.+ +.++++..|..+.+|++..||..|+.+|+.++..++.. ..+
T Consensus 621 ~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna--------------~~~- 684 (963)
T 4ady_A 621 SKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK--------------LNP- 684 (963)
T ss_dssp GGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT--------------TCT-
T ss_pred Hhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc--------------cch-
Confidence 654 3899999999999998 34678999999999999999999999999998765321 111
Q ss_pred CchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 455 DDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 455 ~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
.....+..|.+...++++|...|..+..|+|-+
T Consensus 685 rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 685 QVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp THHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 224566778888887788888999999999887
No 32
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.76 E-value=2.5e-15 Score=156.82 Aligned_cols=278 Identities=18% Similarity=0.187 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHcCCC---hhhHHHHHhhcc---CCCHhHHHHHHHHHhccCCC---CcHHHHHHHhhccCC------CHH
Q psy10052 175 FMRYKAMFKLRDINS---VESTLALTEGLS---HGSSLYRHEIAFVLGQMQNP---SSIPALTSALEDQTQ------NEM 239 (500)
Q Consensus 175 ~~r~~A~~~L~~~~~---~~~i~~l~~~L~---~~~~~vr~~a~~aL~~~~~~---~~i~~L~~~l~~~~~------~~~ 239 (500)
+.+..|+.+|+-+.. .+.+..|.+.|. +.++.++..++.+||-++.. +++..|...+.+.+. ++.
T Consensus 373 ~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHH
Confidence 568888888887654 367888888886 56789999999999988744 357777888876420 267
Q ss_pred HHHHHHHHHhhc----CCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhh
Q psy10052 240 VRHECAEALGAI----ATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLK 315 (500)
Q Consensus 240 vr~~a~~aL~~~----~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~ 315 (500)
+|..|+.+||.+ +++++++.|...+.+++..++..++.+||.+..+. .....+..|...+.
T Consensus 453 ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGT---------------gn~~ai~~LL~~~~ 517 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGT---------------GKPEAIHDMFTYSQ 517 (963)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC---------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc---------------CCHHHHHHHHHHHh
Confidence 999999999974 34568999999998888888889999998653222 22334555655554
Q ss_pred cCCCCHHHHHHHHHHHH--hcCChhhHHHHHHHhc-CCCHHHHHHHHHHHh----ccCCCccHHHHHHHhhcCCCCHHHH
Q psy10052 316 DSSKPLKERFRALFTLK--NIGGKTAIQCISEAFA-DKSALLKHELAYCLG----QMKDSDANDILRQVLEDKSQEPMVR 388 (500)
Q Consensus 316 ~~~~~~~~r~~a~~~L~--~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~----~l~~~~~~~~L~~~l~~~~~~~~vR 388 (500)
+.. .-.+|+.++.+|+ .++.++.++.+++.|. +.++.+|..++.++| ..++..++..|+..+.+.. +..||
T Consensus 518 e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VR 595 (963)
T 4ady_A 518 ETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVR 595 (963)
T ss_dssp HCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHH
T ss_pred ccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHH
Confidence 433 2357888999998 5688899998888776 789999999998887 5567778887777665432 78999
Q ss_pred HHHHHHHhhc--CCccHHHHHHHhh-cCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHH
Q psy10052 389 HEAAEALGAI--GDKSSISILEKYA-QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKE 465 (500)
Q Consensus 389 ~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 465 (500)
..|+.+||.+ +.++.++.+...+ ++.++.||..|+.|||.+...+ ....+++.|..
T Consensus 596 raAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn---------------------~~~~aid~L~~ 654 (963)
T 4ady_A 596 RAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK---------------------GLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS---------------------CCHHHHHHHHH
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC---------------------CcHHHHHHHHH
Confidence 9999999984 6777777777754 6789999999999999997543 23578999999
Q ss_pred HHhcCCccHHHHHHHHHHhHhcC--Chhh
Q psy10052 466 ILLNENEDLFMRYKAMFKLRDIN--SVES 492 (500)
Q Consensus 466 ~l~~~~~~~~~r~~a~~al~~~g--~~~~ 492 (500)
++. |++.+||..|++|||.+| +.++
T Consensus 655 L~~--D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 655 LTK--DPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHT--CSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred Hcc--CCCHHHHHHHHHHHHHHhcCCccc
Confidence 885 556789999999999997 4444
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.75 E-value=2.1e-16 Score=160.77 Aligned_cols=257 Identities=14% Similarity=0.133 Sum_probs=198.7
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC----Cc--------chHHHHHHHcc-CCCHHHHHHHHHHHHccC--C--
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIG----GK--------TAIQCISEAFA-DESALLKHELAYCLGQMK--D-- 67 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~----~~--------~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~--~-- 67 (500)
.+++.+++.|.+.|.+ .+..|...+.++- .+ ..++.|+++|+ ++++.++.+|+|+|+.+. +
T Consensus 57 ~~i~~~v~~l~s~d~~--~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLE--SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp CCHHHHHHHHTSSCHH--HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hhHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 3589999999999976 8999988887652 11 36899999997 667999999999999873 2
Q ss_pred -------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHhcCCC-----HHHHHHHHH
Q psy10052 68 -------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQDPV-----KEVSETCYL 124 (500)
Q Consensus 68 -------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~-----~~vr~~a~~ 124 (500)
..++|.|+.+|.++ ++.||..|+++|+.+... +.++.|+.++.+++ ..+...+.+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 34789999999998 899999999999998531 45788999997665 345678888
Q ss_pred HHHHhchhccchhhccccCcCCCCCCCCCCC-CcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC-----------hhh
Q psy10052 125 ALKRIQFVTEEDKQKDTGNIYGSVDPTPPLD-DVSDINKLKEILLNENEDLFMRYKAMFKLRDINS-----------VES 192 (500)
Q Consensus 125 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~-----------~~~ 192 (500)
+|.++..... +...+. ....++.|..++.+ .+..++..++.+|..+.. ...
T Consensus 213 ~L~nl~~~~~---------------~~~~~~~~~~~lp~L~~LL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~ 275 (510)
T 3ul1_B 213 TLSNLCRNKN---------------PAPPLDAVEQILPTLVRLLHH--NDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275 (510)
T ss_dssp HHHHHHCCCS---------------SCCCHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred HHHHHhhccc---------------chhHHHHHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhchhhhHHHHHhccc
Confidence 8888763211 111100 03357788888854 456688889888887643 246
Q ss_pred HHHHHhhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-------
Q psy10052 193 TLALTEGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALEDQTQNEMVRHECAEALGAIATP------- 254 (500)
Q Consensus 193 i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~------- 254 (500)
++.|+.+|.++++.++..++.+|+.+.. .++++.|..++.+ .++.++..|+++|+++...
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC--SSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC--CCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 7889999999999999999999998752 3567788888876 4688999999999988642
Q ss_pred ----hHHHHHHHhhcCCcHHHHHHHHHHhhhccc
Q psy10052 255 ----ECYDVLRKYLSDEKVVVRQSCEIALDMCDY 284 (500)
Q Consensus 255 ----~~~~~L~~~l~~~~~~vr~~a~~al~~l~~ 284 (500)
++++.|..++.+.+..+|..|+++|..+..
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 468899999999999999999999986543
No 34
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.75 E-value=2.7e-15 Score=162.96 Aligned_cols=423 Identities=12% Similarity=0.057 Sum_probs=260.9
Q ss_pred hHhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCC---cchHHHHHHHccC--CCHHHHHHHHHHHHccCCC---------
Q psy10052 4 EEKILLIGQVL-KDSSKPLKERFRALFTLKNIGG---KTAIQCISEAFAD--ESALLKHELAYCLGQMKDS--------- 68 (500)
Q Consensus 4 ~~~~~~L~~~L-~~~~~~~~~R~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vR~~a~~~L~~~~~~--------- 68 (500)
...+.+++..+ .++|.. .|..|...|.+... +.....|.+.+.+ .++.+|..|+..|.+.-..
T Consensus 3 ~~~l~~~L~~~~~s~d~~--~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 3 TAEFAQLLENSILSPDQN--IRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp HHHHHHHHHHHHHCSSHH--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred HHHHHHHHHHcccCcCHH--HHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 45667777777 888875 99999999998754 5677788888864 4799999999998875211
Q ss_pred --------------ccHHHHHHHhhccCCCHHHHHHHHHHHHhc--------CChhhHHHHHHHhcCC-CHHHHHHHHHH
Q psy10052 69 --------------DANDILRQVLEDKSQEPMVRHEAAEALGAI--------GDKSSISILEKYAQDP-VKEVSETCYLA 125 (500)
Q Consensus 69 --------------~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~--------~~~~~~~~L~~~l~d~-~~~vr~~a~~a 125 (500)
...+.|++.|.++ ++.+|..++.+++.+ .+++.++.|...++++ ++.+|..++.+
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~~--~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~ 158 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVSI--EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLA 158 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1235677788887 789999999999875 2457889999999998 99999999999
Q ss_pred HHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC---C---------hhhH
Q psy10052 126 LKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN---S---------VEST 193 (500)
Q Consensus 126 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~---~---------~~~i 193 (500)
++.+....... +.... ... ...++.+...+.+++.+..+|..++.+++..- . ...+
T Consensus 159 l~~l~~~~~~~--------~~~~~--~~~--~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 159 LGYMCESADPQ--------SQALV--SSS--NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp HHHHHHTSSTT--------SSTTG--GGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred HHHHHHcCChh--------hhHHH--HHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHH
Confidence 99887521100 00000 000 23355556667655446778998888877531 1 1134
Q ss_pred HHHHhhccCCCHhHHHHHHHHHhccCC---CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcCCcHH
Q psy10052 194 LALTEGLSHGSSLYRHEIAFVLGQMQN---PSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVV 270 (500)
Q Consensus 194 ~~l~~~L~~~~~~vr~~a~~aL~~~~~---~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 270 (500)
+.+...+.++++.+|..++..++.+.. ....+.+. ...++.+...+.+.+..
T Consensus 227 ~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-------------------------~~l~~~~~~~~~~~~~~ 281 (861)
T 2bpt_A 227 QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-------------------------QALYALTIATMKSPNDK 281 (861)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-------------------------HTHHHHHHHHTTCSSHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHcCCcHH
Confidence 444445555666666666665544321 00000000 01222333334444455
Q ss_pred HHHHHHHHhhhccccchh--------------HhHHH-HhhhccCCCChHHHHHHHHHhhcC-----CCCHHHHHHHHHH
Q psy10052 271 VRQSCEIALDMCDYENSV--------------ELQYA-DTLCKFKMIPEEKILLIGQVLKDS-----SKPLKERFRALFT 330 (500)
Q Consensus 271 vr~~a~~al~~l~~~~~~--------------~~~~~-~~l~~~~~~~~~~~~~l~~~l~~~-----~~~~~~r~~a~~~ 330 (500)
+|..++..+..+...... ...+. ..+ ...++.+...+.+. +..+.+|..+...
T Consensus 282 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~ 354 (861)
T 2bpt_A 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-------KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGAC 354 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-------HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-------HHHHHHHHHHHHhcccccccccCcHHHHHHHH
Confidence 555554444333211000 00000 000 11233444444432 1234577777776
Q ss_pred HHhcCC-------hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCc-----------cHHHHHHHhhcCCCCHHHHHHHH
Q psy10052 331 LKNIGG-------KTAIQCISEAFADKSALLKHELAYCLGQMKDSD-----------ANDILRQVLEDKSQEPMVRHEAA 392 (500)
Q Consensus 331 L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~-----------~~~~L~~~l~~~~~~~~vR~~a~ 392 (500)
|+.+.. +..++.+.+.+.+.++.+|.+++.+++.+.... .++.|...+.++ ++.||..++
T Consensus 355 L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~ 432 (861)
T 2bpt_A 355 LQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTA 432 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHH
T ss_pred HHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHH
Confidence 654331 234556667778889999999999999887532 356677777776 799999999
Q ss_pred HHHhhcCC------------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhH
Q psy10052 393 EALGAIGD------------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDI 460 (500)
Q Consensus 393 ~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (500)
.+|+++.. +..++.|...++|+ +.||..|+++|..+....... ....+.+ .-+..+
T Consensus 433 ~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~-------~~~~l~~----~~~~il 500 (861)
T 2bpt_A 433 WCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA-------TPSPIYN----FYPALV 500 (861)
T ss_dssp HHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS-------SSCGGGG----GHHHHH
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc-------cchhhHH----HHHHHH
Confidence 99987641 24567777788776 999999999999986543200 0000000 124667
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 461 NKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 461 ~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
+.|.+.+.+.+.+..+|..+..+++.+.
T Consensus 501 ~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 501 DGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 8888888654544579999999999883
No 35
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.74 E-value=2.5e-16 Score=177.37 Aligned_cols=442 Identities=14% Similarity=0.088 Sum_probs=288.5
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHccCCCHHHHHHHHHHHHccCC-----
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADESALLKHELAYCLGQMKD----- 67 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~----- 67 (500)
+..+..|++.+.++|.. +|.+|...|.+.-. +..++.|.+.|.|+++.+|..|+.+|+.+..
T Consensus 5 ~~~l~~lL~~l~s~d~~--~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~ 82 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKD--FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY 82 (1230)
T ss_dssp CHHHHHHHHHTTCSSHH--HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH
T ss_pred HhHHHHHHHhcCCCCHh--HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH
Confidence 56788999999999986 99999888876431 1467788899999999999999999998743
Q ss_pred --CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC----------------ChhhHHHHHHHhc-CCCHHHHHHHHHHHHH
Q psy10052 68 --SDANDILRQVLEDKSQEPMVRHEAAEALGAIG----------------DKSSISILEKYAQ-DPVKEVSETCYLALKR 128 (500)
Q Consensus 68 --~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~ 128 (500)
...++.|...+.++ ++.+|..++.+|+.+. .+..+|.|...+. ++++.+|..|+.+|..
T Consensus 83 ~~~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 23456677777777 6889999999998763 2356777888888 4889999999999998
Q ss_pred hchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC-------hhhHHHHHhhcc
Q psy10052 129 IQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS-------VESTLALTEGLS 201 (500)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~-------~~~i~~l~~~L~ 201 (500)
+....... ..| -. +..++.+...+.+ ++..+|..|+.+++.+.. ...++.+...|.
T Consensus 161 ~~~~~~~~-----------l~~--~~--~~ll~~l~~~L~~--~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 223 (1230)
T 1u6g_C 161 MLSRQGGL-----------LVN--FH--PSILTCLLPQLTS--PRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS 223 (1230)
T ss_dssp HHHHTCSS-----------CTT--TH--HHHHHHHGGGGGC--SSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHH
T ss_pred HHHHhHhH-----------HHH--HH--HHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 76421100 000 00 3345666666754 456799999998887543 235777777775
Q ss_pred CC-CHhHHHHHHHHHhccC----------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC---c-------hHHHHH
Q psy10052 202 HG-SSLYRHEIAFVLGQMQ----------NPSSIPALTSALEDQTQNEMVRHECAEALGAIAT---P-------ECYDVL 260 (500)
Q Consensus 202 ~~-~~~vr~~a~~aL~~~~----------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~-------~~~~~L 260 (500)
+. ++.+|..++.+++.+. -+..++.+...+.+ .++.+|..+..+++.+.. . ..++.+
T Consensus 224 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~l 301 (1230)
T 1u6g_C 224 KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV--DDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301 (1230)
T ss_dssp HTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS--CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHH
Confidence 43 3467777777776442 24678888888876 356799998888875431 1 123333
Q ss_pred HHhhcC-------------------------------------CcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCC
Q psy10052 261 RKYLSD-------------------------------------EKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIP 303 (500)
Q Consensus 261 ~~~l~~-------------------------------------~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~ 303 (500)
.+.+.. ..|.+|..++.+++.+....... +...+
T Consensus 302 l~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~--~~~~~------- 372 (1230)
T 1u6g_C 302 LKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM--LPEFY------- 372 (1230)
T ss_dssp TTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT--HHHHH-------
T ss_pred HHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH--HHHHH-------
Confidence 333321 12455666666665443211100 00000
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC-----------------------------ChhhHHHHHHHhcCCCHHH
Q psy10052 304 EEKILLIGQVLKDSSKPLKERFRALFTLKNIG-----------------------------GKTAIQCISEAFADKSALL 354 (500)
Q Consensus 304 ~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~-----------------------------~~~~~~~L~~~l~~~~~~v 354 (500)
...++.+...+.+.+. .+|..++.++..+. -+..++.+.+.+.++++.+
T Consensus 373 ~~l~~~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~v 450 (1230)
T 1u6g_C 373 KTVSPALISRFKEREE--NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 450 (1230)
T ss_dssp TTTHHHHHSTTSCSSS--HHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHH
Confidence 0112344444444443 47777776654321 1234455666699999999
Q ss_pred HHHHHHHHhccCC----------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC---Cc--------cHHHHHHHhhcC
Q psy10052 355 KHELAYCLGQMKD----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG---DK--------SSISILEKYAQD 413 (500)
Q Consensus 355 r~~a~~aL~~l~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~---~~--------~~~~~L~~~l~d 413 (500)
|..++.+++.+.. ...++.+...+.+.+....+|..++..++.+. .+ ..++.|...++|
T Consensus 451 r~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d 530 (1230)
T 1u6g_C 451 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD 530 (1230)
T ss_dssp HHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc
Confidence 9999999887632 13567788888876434589999999988652 12 356777888899
Q ss_pred CCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 414 PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 414 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
++..||..+..+++.+........ ..+ .....+ .-...++.+...+...+.+..+|..|+.++|.+
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~-----~~~--~~~~~~-~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLD-----QPS--SFDATP-YIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSS-----SCC--CCCCHH-HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcc-----ccc--ccchHH-HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999888888764322100 000 000000 123667777887854566667999999999988
No 36
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.72 E-value=9.6e-16 Score=172.61 Aligned_cols=439 Identities=15% Similarity=0.091 Sum_probs=285.8
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHccCCCHHHHHHHHHHHHccC----C------
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGG-------KTAIQCISEAFADESALLKHELAYCLGQMK----D------ 67 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~----~------ 67 (500)
.-++.|.+.|.+++. .+|..|+..|+.+.. +..++.|.+.+.|+++.+|..++.+|+.+. .
T Consensus 48 ~il~~Ll~~L~d~~~--~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNG--EVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHHHTTCSSH--HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 456678888887664 599999999988653 235667778888999999999999998762 1
Q ss_pred ------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC----C------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 68 ------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG----D------KSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 68 ------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
+..++.|...+.+.+ ++.+|..|+.+|+.+. . +..++.|...+.|+++.||..|+.+++.+..
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 234677777887522 7899999999998863 1 2456777778899999999999999999874
Q ss_pred hccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC----------ChhhHHHHHhhcc
Q psy10052 132 VTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN----------SVESTLALTEGLS 201 (500)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~----------~~~~i~~l~~~L~ 201 (500)
...... + ...++.+++.+.+.+. ..+|..++.+++.+. -++.++.+...+.
T Consensus 205 ~~~~~~----------------~--~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 205 SCGNIV----------------F--VDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp TC--------------------C--TTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS
T ss_pred hcCHHH----------------H--HHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 321100 0 3357888888854322 124555665555421 1367888888888
Q ss_pred CCCHhHHHHHHHHHhccC---CCC-------cHHHHHHHhhc-----------------------------------cCC
Q psy10052 202 HGSSLYRHEIAFVLGQMQ---NPS-------SIPALTSALED-----------------------------------QTQ 236 (500)
Q Consensus 202 ~~~~~vr~~a~~aL~~~~---~~~-------~i~~L~~~l~~-----------------------------------~~~ 236 (500)
++++.+|..++.+++.+. ... .++.+...+.. .+.
T Consensus 266 d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 266 VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------C
T ss_pred CCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 888999998888776543 222 12333332210 011
Q ss_pred CHHHHHHHHHHHhhcCC----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHH---hh-------
Q psy10052 237 NEMVRHECAEALGAIAT----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYAD---TL------- 296 (500)
Q Consensus 237 ~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~---~l------- 296 (500)
.+.+|..|+.+++.+.. +..++.+...+.|.+..||..++.+++.+............ ..
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL 425 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHH
T ss_pred CHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchH
Confidence 24579999988875432 12366677777888999999999888754321000000000 00
Q ss_pred hccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhcCCC--HHHHHHHHHHHhc
Q psy10052 297 CKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG----------KTAIQCISEAFADKS--ALLKHELAYCLGQ 364 (500)
Q Consensus 297 ~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~L~~~l~~~~--~~vr~~a~~aL~~ 364 (500)
..+...-...++.+.+.+.+++ +.+|..++.+++.+.. +..++.+...|.++. ..+|..++..++.
T Consensus 426 ~~~~~~l~~ll~~l~~~l~~~~--~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 426 TMLQSQVPNIVKALHKQMKEKS--VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHTTHHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 0000000122344555566554 6788888888875421 345677888888875 4889988888876
Q ss_pred cC----C-------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhc----CC-------------ccHHHHHHHhh--cCC
Q psy10052 365 MK----D-------SDANDILRQVLEDKSQEPMVRHEAAEALGAI----GD-------------KSSISILEKYA--QDP 414 (500)
Q Consensus 365 l~----~-------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~----~~-------------~~~~~~L~~~l--~d~ 414 (500)
+. . +..++.|...+.+. ++.+|..++.+++.+ +. +..++.+...+ .|.
T Consensus 504 ~~~~~~~~~~~~~l~~llp~L~~~l~d~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 504 ILCNHSPQVFHPHVQALVPPVVACVGDP--FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI 581 (1230)
T ss_dssp HHHSSCGGGGHHHHTTTHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHhCCHHHHHhHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCC
Confidence 62 1 23577888888876 799999888888754 32 24566777777 788
Q ss_pred CHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 415 VKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 415 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
++.+|..|..+++.+....+.... + .-+..++.|.+.+. ++ ..|..+..+++.+.
T Consensus 582 ~~~vr~~a~~~lg~L~~~~g~~~~-----------~----~~~~~l~~L~~~l~--~e--~~r~~~~~al~~i~ 636 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNLGDNLG-----------S----DLPNTLQIFLERLK--NE--ITRLTTVKALTLIA 636 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTGGGCC-----------T----HHHHHHHHHHHHTT--SS--SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCchhh-----------h----hHHHHHHHHHHHhc--cc--hhHHHHHHHHHHHH
Confidence 999999999999999765432111 0 11355566666553 22 37889999998875
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.71 E-value=2.8e-15 Score=162.88 Aligned_cols=451 Identities=14% Similarity=0.101 Sum_probs=284.6
Q ss_pred HhHHHHHHhhcCC-CCCHHHHHHHHHHHHhcCC---------c----chHHHHHHHccCC--CHHHHHHHHHHHHcc---
Q psy10052 5 EKILLIGQVLKDS-SKPLKERFRALFTLKNIGG---------K----TAIQCISEAFADE--SALLKHELAYCLGQM--- 65 (500)
Q Consensus 5 ~~~~~L~~~L~~~-~~~~~~R~~A~~~L~~~~~---------~----~~~~~L~~~l~~~--~~~vR~~a~~~L~~~--- 65 (500)
.-++.|.+.+.++ +. ..|..|+..|..+.. . ..++.+...+.|+ ++.||..++.+++.+
T Consensus 134 ~ll~~L~~~l~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPE--NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHTSTTSCH--HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567778888876 54 489989888876431 1 2344556667776 899999999998863
Q ss_pred -CC--------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh-----------hhHHHHHHHhcCCCHHHHHHHHHH
Q psy10052 66 -KD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQDPVKEVSETCYLA 125 (500)
Q Consensus 66 -~~--------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~a 125 (500)
+. ...++.|...+.++ ++.+|..++++|+.+... ..++.+...+.|.++.||..|+..
T Consensus 212 ~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 212 IKNNMEREGERNYLMQVVCEATQAE--DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHccChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 10 12355566666666 789999999999876421 344555567789999999999998
Q ss_pred HHHhchhccchhhccccCcCCCCCCC--CCCCC---cccHHHHHHHhcCCC-----cCHHHHHHHHHHHHcCCC------
Q psy10052 126 LKRIQFVTEEDKQKDTGNIYGSVDPT--PPLDD---VSDINKLKEILLNEN-----EDLFMRYKAMFKLRDINS------ 189 (500)
Q Consensus 126 L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~L~~~l~d~~-----~~~~~r~~A~~~L~~~~~------ 189 (500)
+..+..........-... +..|. +.... ...++.++..+.+.+ .+..+|..+...|..+..
T Consensus 290 l~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~ 366 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQF---PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHC---TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHhhhhhhhhc---cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhH
Confidence 887754321000000000 00000 00000 224566667775421 234578888777755331
Q ss_pred -hhhHHHHHhhccCCCHhHHHHHHHHHhccCCCC-----------cHHHHHHHhhccCCCHHHHHHHHHHHhhcCC----
Q psy10052 190 -VESTLALTEGLSHGSSLYRHEIAFVLGQMQNPS-----------SIPALTSALEDQTQNEMVRHECAEALGAIAT---- 253 (500)
Q Consensus 190 -~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~-----------~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---- 253 (500)
+..++.+...++++++.+|..++.++|.+.... .++.|...+.| .++.||..++++++.+..
T Consensus 367 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND--QSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHhhh
Confidence 245566666778889999999999999887432 35566666766 479999999999986542
Q ss_pred --------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHH
Q psy10052 254 --------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERF 325 (500)
Q Consensus 254 --------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~ 325 (500)
...++.+.+.+.++ +.||..++.+++.+....... .-..+.......++.|.+.+.+.+.+..+|.
T Consensus 445 ~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~-----~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~ 518 (861)
T 2bpt_A 445 SIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA-----TPSPIYNFYPALVDGLIGAANRIDNEFNARA 518 (861)
T ss_dssp GSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS-----SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHH
T ss_pred hcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc-----cchhhHHHHHHHHHHHHHHHhCcCcchHHHH
Confidence 13567777888876 899999999998654321100 0000111112335567777775554345788
Q ss_pred HHHHHHHhcCC---h-------hhHHHHHHHhcC---------------CCHHHHHHHHHHHhccCC----------Ccc
Q psy10052 326 RALFTLKNIGG---K-------TAIQCISEAFAD---------------KSALLKHELAYCLGQMKD----------SDA 370 (500)
Q Consensus 326 ~a~~~L~~~~~---~-------~~~~~L~~~l~~---------------~~~~vr~~a~~aL~~l~~----------~~~ 370 (500)
.++.+++.+.. . ..++.+++.+.+ ....+|..++.+|+.+.. +..
T Consensus 519 ~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 598 (861)
T 2bpt_A 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598 (861)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred HHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88887775532 1 233444454432 234577788888765521 124
Q ss_pred HHHHHHHhhcCCCCH-HHHHHHHHHHhhcCC----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhccccc
Q psy10052 371 NDILRQVLEDKSQEP-MVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 439 (500)
Q Consensus 371 ~~~L~~~l~~~~~~~-~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~ 439 (500)
++.+...+.+. ++ .+|..++.+++.+.. +..++.|...++++++.+|..+...++.+.........
T Consensus 599 ~~~l~~~l~~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~- 675 (861)
T 2bpt_A 599 MGLFFRLLEKK--DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFR- 675 (861)
T ss_dssp HHHHHHHHHST--TGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGH-
T ss_pred HHHHHHHHccC--CCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhcc-
Confidence 56667777765 45 899999888877531 35677788888888999999999999988654321110
Q ss_pred ccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 440 DTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
+ .....++.+.+.+.+++.+..+|..+..+++.+
T Consensus 676 ----------~----~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l 709 (861)
T 2bpt_A 676 ----------R----YSDAMMNVLAQMISNPNARRELKPAVLSVFGDI 709 (861)
T ss_dssp ----------H----HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHH
T ss_pred ----------c----hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHH
Confidence 0 113567777788876543456999999999887
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.70 E-value=8.8e-15 Score=149.56 Aligned_cols=350 Identities=12% Similarity=0.090 Sum_probs=250.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHH
Q psy10052 102 SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 181 (500)
Q Consensus 102 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~ 181 (500)
..++.+++.++++|+.++..|...+.++-.....+.. ..+...+.++.|+++|... .++.++..|+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i-------------~~ii~~G~ip~Lv~lL~~~-~~~~~q~~Aa 141 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI-------------DNIIRAGLIPKFVSFLGKT-DCSPIQFESA 141 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCH-------------HHHHHTTHHHHHHHHHTCT-TCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchH-------------HHHHHCCCHHHHHHHHcCC-CCHHHHHHHH
Confidence 3578888999999999999999999886432221111 0000134689999999643 3566888899
Q ss_pred HHHHcCCC--h---------hhHHHHHhhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhccC---C
Q psy10052 182 FKLRDINS--V---------ESTLALTEGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALEDQT---Q 236 (500)
Q Consensus 182 ~~L~~~~~--~---------~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~---~ 236 (500)
++|.++.. . .+++.|+.+|.++++.++..++++|+.+.. .++++.|+.++...+ .
T Consensus 142 ~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~ 221 (529)
T 3tpo_A 142 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL 221 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh
Confidence 99887642 1 478999999999999999999999998752 357899999987532 1
Q ss_pred CHHHHHHHHHHHhhcCC-----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChH
Q psy10052 237 NEMVRHECAEALGAIAT-----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEE 305 (500)
Q Consensus 237 ~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~ 305 (500)
...+...++++|..+.. ..++|.|..++.++++.++..++++|..+........+.... ..
T Consensus 222 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~--------~g 293 (529)
T 3tpo_A 222 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK--------KG 293 (529)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT--------TT
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh--------cc
Confidence 24467778888875532 246889999999999999999999999877654432221111 12
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHhccCC-------
Q psy10052 306 KILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLKHELAYCLGQMKD------- 367 (500)
Q Consensus 306 ~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~------- 367 (500)
.++.|.+++.+++ ..++..++.+|+.+.. ..+++.|..++.+++..+|..++++|+++..
T Consensus 294 ~i~~Lv~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~ 371 (529)
T 3tpo_A 294 VVPQLVKLLGATE--LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 371 (529)
T ss_dssp CHHHHHHHHTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred chHHHHHHhcCCC--hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH
Confidence 3567888888766 4578899999987743 2356788899999999999999999998854
Q ss_pred ----CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC---Cc---------cHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 368 ----SDANDILRQVLEDKSQEPMVRHEAAEALGAIG---DK---------SSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 368 ----~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~---~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
..+++.|+.++.+. ++.+|..|+++|+++. ++ .+++.|..+++.+|+.++..+..+|.+|-.
T Consensus 372 ~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 372 QVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 24789999999887 7999999999999873 22 467889999999999999999999999864
Q ss_pred hhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 432 VTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
........ +.+.. -......++.+..+..++ ...++..|..-+.++
T Consensus 450 ~~~~~~~~---~~~~~-----~iee~ggl~~ie~Lq~~~--n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 450 AAEKLGET---EKLSI-----MIEECGGLDKIEALQRHE--NESVYKASLNLIEKY 495 (529)
T ss_dssp HHHTTTCH---HHHHH-----HHHHTTCHHHHTGGGGCS--SHHHHHHHHHHHHHH
T ss_pred HhHhccCh---HHHHH-----HHHHCCcHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 33211000 00000 001124566666655434 445888887777654
No 39
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.66 E-value=1e-13 Score=150.90 Aligned_cols=433 Identities=14% Similarity=0.084 Sum_probs=262.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---cchHHHHHHHccC--CCHHHHHHHHHHHHcc-CC-------------
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG---KTAIQCISEAFAD--ESALLKHELAYCLGQM-KD------------- 67 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vR~~a~~~L~~~-~~------------- 67 (500)
+.+++..+.+++.. +|..|...|.+... +.....|...+.+ .++.+|..|+..|... ..
T Consensus 3 l~~~L~~~~s~d~~--~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 3 LITILEKTVSPDRL--ELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp HHHHHHGGGCSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH--HHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 55677777888875 99999999988753 4566778888865 4689999999998763 10
Q ss_pred C--------ccHHHHHHHhhccCCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhcCC--CHHHHHHHHHHHHHh
Q psy10052 68 S--------DANDILRQVLEDKSQEPMVRHEAAEALGAIG--------DKSSISILEKYAQDP--VKEVSETCYLALKRI 129 (500)
Q Consensus 68 ~--------~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~ 129 (500)
. ...+.|++.|.++ ++.+ ..++.+++.+. +++.++.|...++++ ++.+|..++.+|+.+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~--~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTE--TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTC--CSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCC--cHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 0 1123477788776 5667 77777776542 467899999999999 999999999999988
Q ss_pred chhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC------------hhhHHHHH
Q psy10052 130 QFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS------------VESTLALT 197 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~------------~~~i~~l~ 197 (500)
......... . . .+ +..++.+...+.+++.+..+|..++.++..+-. ...++.+.
T Consensus 158 ~~~~~~~~~--~-~---------~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 158 CQDIDPEQL--Q-D---------KS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHSCHHHH--G-G---------GH--HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHhcCHhhH--H-h---------HH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 653210000 0 0 00 234566777776654456789999988876321 01355556
Q ss_pred hhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcC
Q psy10052 198 EGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSD 266 (500)
Q Consensus 198 ~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~ 266 (500)
..+.++++.+|..++..++.+.. ...++.+...+.+ .++.+|..+++.+..+..... .+. ..+
T Consensus 224 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~al~~l~~l~~~~~--~~~--~~~ 297 (876)
T 1qgr_A 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEM--DLA--IEA 297 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHH--HHH--HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHH--hHh--hhh
Confidence 66667778888888877765431 1444555555544 346677777766655432110 000 000
Q ss_pred CcHHHHHHHHHHhhhccccchhHhHHHH-hhhccCCCChHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHhcCC----
Q psy10052 267 EKVVVRQSCEIALDMCDYENSVELQYAD-TLCKFKMIPEEKILLIGQVLKDS-----SKPLKERFRALFTLKNIGG---- 336 (500)
Q Consensus 267 ~~~~vr~~a~~al~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~l~~~-----~~~~~~r~~a~~~L~~~~~---- 336 (500)
+.. ...-.........+.. .+ ...++.+.+.+... +..|.+|..+...++.+..
T Consensus 298 -~~~--------~~~~~~~~~~~~~~~~~~~-------~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~ 361 (876)
T 1qgr_A 298 -SEA--------AEQGRPPEHTSKFYAKGAL-------QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (876)
T ss_dssp -HHH--------HHHSSCCSSCCCCHHHHHH-------HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred -ccc--------cccCCCccchhHHHHHHHH-------HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH
Confidence 000 0000000000000000 00 11123343444321 2345678888777764421
Q ss_pred ---hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCc-----------cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--
Q psy10052 337 ---KTAIQCISEAFADKSALLKHELAYCLGQMKDSD-----------ANDILRQVLEDKSQEPMVRHEAAEALGAIGD-- 400 (500)
Q Consensus 337 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~-----------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~-- 400 (500)
+..++.+...+.++++.+|.+++.+++.+.... .++.|+..+.++ ++.||..|+.+|+++..
T Consensus 362 ~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhC
Confidence 234556667788999999999999999887531 467778888776 79999999999997642
Q ss_pred ----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCC---CCCCCCCCCCCCchhhHHHHHHHH
Q psy10052 401 ----------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGN---IYGSVDPTPPLDDVSDINKLKEIL 467 (500)
Q Consensus 401 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l 467 (500)
+..++.|...+.|+ +.||..++++|..+.............. ....+.| .-+..++.|.+.+
T Consensus 440 ~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~----~~~~il~~L~~~l 514 (876)
T 1qgr_A 440 PEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS----SFELIVQKLLETT 514 (876)
T ss_dssp GGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT----THHHHHHHHHHHT
T ss_pred chhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH----hHHHHHHHHHHHH
Confidence 13556677777775 8999999999999876543100000000 0000111 1247788888887
Q ss_pred hcCC-ccHHHHHHHHHHhHhc
Q psy10052 468 LNEN-EDLFMRYKAMFKLRDI 487 (500)
Q Consensus 468 ~~~~-~~~~~r~~a~~al~~~ 487 (500)
.+.+ .+..+|..+..+++.+
T Consensus 515 ~~~~~~~~~~r~~~~~~l~~l 535 (876)
T 1qgr_A 515 DRPDGHQNNLRSSAYESLMEI 535 (876)
T ss_dssp TSCSSCSTTHHHHHHHHHHHH
T ss_pred hCcCcchhhHHHHHHHHHHHH
Confidence 6542 1235888888888776
No 40
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.65 E-value=1.4e-13 Score=149.72 Aligned_cols=461 Identities=14% Similarity=0.046 Sum_probs=285.1
Q ss_pred HhHHHHHHhhcCC--CCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHccCC--CHHHHHHHHHHHHccCC--
Q psy10052 5 EKILLIGQVLKDS--SKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADE--SALLKHELAYCLGQMKD-- 67 (500)
Q Consensus 5 ~~~~~L~~~L~~~--~~~~~~R~~A~~~L~~~~~-----------~~~~~~L~~~l~~~--~~~vR~~a~~~L~~~~~-- 67 (500)
.-++.|...+.++ +. .+|..++..|..+.. +..++.+.+.+.++ ++.+|..++++++.+-.
T Consensus 128 ~ll~~l~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467888888887 54 499999999887542 23456677778766 79999999999986421
Q ss_pred ----C------ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------h-hhHHHHHHHhcCCCHHHHHHHHHHH
Q psy10052 68 ----S------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------K-SSISILEKYAQDPVKEVSETCYLAL 126 (500)
Q Consensus 68 ----~------~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~-~~~~~L~~~l~d~~~~vr~~a~~aL 126 (500)
. ..++.+...+.++ ++.+|..++++|+.+.. . ..++.+...+.++++.||..+++.+
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 0 1355566666666 78999999999987542 1 4566777778899999999999888
Q ss_pred HHhchhccchhh----ccccCcCCCCCCCCCCC---CcccHHHHHHHhcCC-----CcCHHHHHHHHHHHHcCCC-----
Q psy10052 127 KRIQFVTEEDKQ----KDTGNIYGSVDPTPPLD---DVSDINKLKEILLNE-----NEDLFMRYKAMFKLRDINS----- 189 (500)
Q Consensus 127 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~L~~~l~d~-----~~~~~~r~~A~~~L~~~~~----- 189 (500)
..+......... ...... ....+..... ....++.+.+.+... +.++.+|..+..++..+..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~ 362 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGR-PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS-CCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhHhhhhccccccCC-CccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh
Confidence 877543100000 000000 0000000000 022355566666321 2234578888777765321
Q ss_pred --hhhHHHHHhhccCCCHhHHHHHHHHHhccCCC-----------CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc--
Q psy10052 190 --VESTLALTEGLSHGSSLYRHEIAFVLGQMQNP-----------SSIPALTSALEDQTQNEMVRHECAEALGAIATP-- 254 (500)
Q Consensus 190 --~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~-----------~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-- 254 (500)
+..++.+...++++++.+|..++.++|.+... ..++.+...+.| .++.||..|+++|+.+...
T Consensus 363 ~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCc
Confidence 23556666777889999999999999988642 236667777776 5689999999999865421
Q ss_pred ----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhH---HH--HhhhccCCCChHHHHHHHHHhhcCCC
Q psy10052 255 ----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQ---YA--DTLCKFKMIPEEKILLIGQVLKDSSK 319 (500)
Q Consensus 255 ----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~---~~--~~l~~~~~~~~~~~~~l~~~l~~~~~ 319 (500)
..++.+...+.++ +.||..++.+++.+......... .. ..-..+.......++.|...+.+.+.
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~ 519 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG 519 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS
T ss_pred hhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc
Confidence 3467777788775 88999999999866432110000 00 00000111223456677777765431
Q ss_pred -CHHHHHHHHHHHHhcC---Ch-------hhHHHHHHHhc-----------CCC----HHHHHHHHHHHhccCC------
Q psy10052 320 -PLKERFRALFTLKNIG---GK-------TAIQCISEAFA-----------DKS----ALLKHELAYCLGQMKD------ 367 (500)
Q Consensus 320 -~~~~r~~a~~~L~~~~---~~-------~~~~~L~~~l~-----------~~~----~~vr~~a~~aL~~l~~------ 367 (500)
...+|..++.+++.+. .. ..++.++..+. +.+ +.+|..++.+++.+..
T Consensus 520 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 1235666777666442 11 23344444332 223 4567777777765532
Q ss_pred -----CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC----------ccHHHHHHHhhcCC-CHhHHHHHHHHHHHhhh
Q psy10052 368 -----SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQDP-VKEVSETCYLALKRIQF 431 (500)
Q Consensus 368 -----~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~~ 431 (500)
+..++.|...+.+.+..+.+|..++.+++.+.. +..++.|...+.+. ++.||..+..+++.+..
T Consensus 600 ~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 679 (876)
T 1qgr_A 600 ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCR 679 (876)
T ss_dssp HHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 124666777776652125789999999877532 35667778888776 89999999999999876
Q ss_pred hhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 432 VTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
....... + .-...++.|.+.|.+.+.+..+|..++.+++++.
T Consensus 680 ~~~~~~~-----------~----~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 680 ALQSNII-----------P----FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHGGGGH-----------H----HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHhhh-----------h----hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHH
Confidence 4432111 0 1246778888888653334469999999999883
No 41
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=1.1e-13 Score=139.10 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=149.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---cchHHHHHHHccCC--CHHHHHHHHHHHHccCCC-------------
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG---KTAIQCISEAFADE--SALLKHELAYCLGQMKDS------------- 68 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~---~~~~~~L~~~l~~~--~~~vR~~a~~~L~~~~~~------------- 68 (500)
+.+++..+.++|.. +|..|-..|.++.. +.....|...+.++ ++.+|..|+..|.+.-..
T Consensus 3 l~~~L~~~~s~d~~--~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRL--ELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH--HHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 45666667788875 99999999998764 45667788888644 789999999988875211
Q ss_pred ---------ccHHHHHHHhhccCCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhcCC--CHHHHHHHHHHHHHh
Q psy10052 69 ---------DANDILRQVLEDKSQEPMVRHEAAEALGAIG--------DKSSISILEKYAQDP--VKEVSETCYLALKRI 129 (500)
Q Consensus 69 ---------~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~ 129 (500)
.....|++.|.++ ++.+ ..++.+++.+. +++.++.|...++++ ++.+|..++.+|+.+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~--~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTE--TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCC--CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCC--Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 1335577778777 5667 77888777642 457889999999998 999999999999988
Q ss_pred chhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC--------h---h-hHHHHH
Q psy10052 130 QFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS--------V---E-STLALT 197 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~--------~---~-~i~~l~ 197 (500)
......... . +.+ +..++.+...+.+++.+..+|..|+.+++.+-. . . .++.+.
T Consensus 158 ~~~~~~~~~----------~--~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (462)
T 1ibr_B 158 CQDIDPEQL----------Q--DKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (462)
T ss_dssp HHHSCGGGT----------G--GGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH
T ss_pred HHhCCchhh----------H--hHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 753210000 0 000 234677777886653367789999988876311 0 1 244555
Q ss_pred hhccCCCHhHHHHHHHHHhccC----------CC-CcHHHHHHHhhccCCCHHHHHHHHHHHhhcC
Q psy10052 198 EGLSHGSSLYRHEIAFVLGQMQ----------NP-SSIPALTSALEDQTQNEMVRHECAEALGAIA 252 (500)
Q Consensus 198 ~~L~~~~~~vr~~a~~aL~~~~----------~~-~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 252 (500)
..+.++++.+|..++++++.+. -+ ..++.+...+.+ .++.+|..+++.++.+.
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC--SSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHH
Confidence 5566677778877777775432 12 445555555554 35667777776665543
No 42
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=7.7e-14 Score=140.17 Aligned_cols=342 Identities=13% Similarity=0.054 Sum_probs=202.6
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHccCC---CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh----------------
Q psy10052 41 QCISEAFADESALLKHELAYCLGQMKD---SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---------------- 101 (500)
Q Consensus 41 ~~L~~~l~~~~~~vR~~a~~~L~~~~~---~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~---------------- 101 (500)
..++..+.++|+.+|..|-..|.++.. +.....|...+.+.+.++.+|..|+..|.++-..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 345555668888899888888887753 5566777888877544678888888888765211
Q ss_pred ------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHH
Q psy10052 102 ------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLF 175 (500)
Q Consensus 102 ------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~ 175 (500)
.....|+..+.++++.+ ..+..+++.+....... ..+ +..++.|.+.+.+++.++.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~------~~w-----------~~ll~~L~~~l~~~~~~~~ 145 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV------NQW-----------PELIPQLVANVTNPNSTEH 145 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG------TCC-----------TTHHHHHHHHHHCTTCCHH
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc------ccc-----------HHHHHHHHHHhccCCCCHH
Confidence 12234555666666666 66666666665321000 000 3346666666644311445
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC--
Q psy10052 176 MRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT-- 253 (500)
Q Consensus 176 ~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-- 253 (500)
+|..++.+|+.+...- .+.. +. -..+..++.+...+.+.+.++.||..|+.+++.+-.
T Consensus 146 ~r~~al~~l~~l~~~~------------~~~~-------~~-~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 146 MKESTLEAIGYICQDI------------DPEQ-------LQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp HHHHHHHHHHHHHHHS------------CGGG-------TG-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhC------------Cchh-------hH-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666666665432100 0000 00 000012333444444321134455555555543110
Q ss_pred ----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCCh-HHHHHHHHHhhcCCCCHH
Q psy10052 254 ----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPE-EKILLIGQVLKDSSKPLK 322 (500)
Q Consensus 254 ----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~l~~~~~~~~ 322 (500)
...++.+.+.+.++++.+|..++.++..+...... .+...-. ..++.+...+.+.+ ..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~--~~ 274 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ---------YMETYMGPALFAITIEAMKSDI--DE 274 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG---------GCTTTTTTTHHHHHHHHHHCSS--HH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHcCCc--hH
Confidence 01355666677888899999999988866533221 1111112 33444555555544 34
Q ss_pred HHHHHHHHHHhcCC-------------------------------hhhHHHHHHHhc-------CCCHHHHHHHHHHHhc
Q psy10052 323 ERFRALFTLKNIGG-------------------------------KTAIQCISEAFA-------DKSALLKHELAYCLGQ 364 (500)
Q Consensus 323 ~r~~a~~~L~~~~~-------------------------------~~~~~~L~~~l~-------~~~~~vr~~a~~aL~~ 364 (500)
+|..++..+..+.. +..++.+++.+. ++++.+|..++.+|+.
T Consensus 275 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 67777775554321 234555556664 2356789999998887
Q ss_pred cCC---Cc----cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC-----------ccHHHHHHHhhcCCCHhHHHHHHHHH
Q psy10052 365 MKD---SD----ANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLAL 426 (500)
Q Consensus 365 l~~---~~----~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL 426 (500)
+.. .. .++.+...+.+. +|.+|.+|+.+||.+.. +..++.+...++|+++.||..|+++|
T Consensus 355 l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l 432 (462)
T 1ibr_B 355 LATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432 (462)
T ss_dssp HHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 642 23 455566667665 89999999999998853 35789999999999999999999999
Q ss_pred HHhhhhh
Q psy10052 427 KRIQFVT 433 (500)
Q Consensus 427 ~~l~~~~ 433 (500)
+++....
T Consensus 433 ~~~~~~~ 439 (462)
T 1ibr_B 433 GRICELL 439 (462)
T ss_dssp HHHHHHG
T ss_pred HHHHHhc
Confidence 9998654
No 43
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.62 E-value=2.7e-16 Score=128.97 Aligned_cols=122 Identities=23% Similarity=0.289 Sum_probs=105.4
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccC
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKS 82 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~ 82 (500)
.+...+.|...|+|+++. +|..|++.|++++.+ .++.|.+.|+|+++.||..|+++|+.+++..+++.|..+|+|+
T Consensus 10 ~~~~~~~l~~~L~~~~~~--vR~~A~~~L~~~~~~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~- 85 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKW--VRRDVSTALSRMGDE-AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD- 85 (131)
T ss_dssp -----------CCSSCCC--SSSSCCSSTTSCSST-THHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHhcCCCHH--HHHHHHHHHHHhCch-HHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-
Confidence 356788899999999987 999999999999976 4799999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 83 QEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 83 ~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
++.||..|+++|+.++++..++.|.++++|+++.||..|+.+|++|
T Consensus 86 -~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 86 -SGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -CTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999764
No 44
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.57 E-value=4.8e-12 Score=127.79 Aligned_cols=321 Identities=13% Similarity=0.085 Sum_probs=203.6
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccC--C---------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC---h-
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMK--D---------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD---K- 101 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~--~---------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~---~- 101 (500)
...++.|++.|.++++.++..|+++|..+. + ..+++.|+.+|.++ ++.++..|+++|+.+.. .
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~--~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP--KKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS--SHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC--CHHHHHHHHHHHHHHHccCCHH
Confidence 468999999999999999999999998763 2 35789999999988 79999999999999864 2
Q ss_pred --------hhHHHHHHHhcC-CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcC---
Q psy10052 102 --------SSISILEKYAQD-PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLN--- 169 (500)
Q Consensus 102 --------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d--- 169 (500)
+.++.|+.+|.+ ++..++..++.+|.++......... +. ...++.|++.+..
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~---------------~~alp~Lv~LL~~p~s 188 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IV---------------DHALHALTDEVIIPHS 188 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HH---------------HHTHHHHHHHTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HH---------------hccHHHHHHHHhcccc
Confidence 468999999986 6889999999999998753322111 00 2246677765510
Q ss_pred -------------CCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhcc--
Q psy10052 170 -------------ENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQ-- 234 (500)
Q Consensus 170 -------------~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~-- 234 (500)
...+..++..|..+|.+.... ++..|..+.. ..+.++.|+.++.+.
T Consensus 189 g~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~-------------~~~~R~~i~~------~~Gli~~LV~~L~~~~~ 249 (584)
T 3l6x_A 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSE-------------RSEARRKLRE------CDGLVDALIFIVQAEIG 249 (584)
T ss_dssp CCC----------CCCCHHHHHHHHHHHHHHTSS-------------CHHHHHHHHH------STTHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHhcC-------------CHHHHHHHHH------cCCcHHHHHHHHHHhhc
Confidence 112345666666666554321 1111111110 012233333333310
Q ss_pred --CCCHHHHHHHHHHHhhc------------------------------------CCchHHHHHHHhhc-CCcHHHHHHH
Q psy10052 235 --TQNEMVRHECAEALGAI------------------------------------ATPECYDVLRKYLS-DEKVVVRQSC 275 (500)
Q Consensus 235 --~~~~~vr~~a~~aL~~~------------------------------------~~~~~~~~L~~~l~-~~~~~vr~~a 275 (500)
+.+......++.+|.++ -.+.+++.|..++. ..++.+++.|
T Consensus 250 ~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~A 329 (584)
T 3l6x_A 250 QKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329 (584)
T ss_dssp TTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHH
Confidence 01112333333333221 12234556666664 3456777777
Q ss_pred HHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHH
Q psy10052 276 EIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLK 355 (500)
Q Consensus 276 ~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr 355 (500)
+.+|..+......... .+ | ..+.....++.|+.+|.+++..++
T Consensus 330 a~AL~nL~ag~~~~~~-----------------~~-------------~-------~~v~~~~glp~Lv~LL~s~~~~v~ 372 (584)
T 3l6x_A 330 AGAIQNLCAGRWTYGR-----------------YI-------------R-------SALRQEKALSAIADLLTNEHERVV 372 (584)
T ss_dssp HHHHHHHHSSCSHHHH-----------------HH-------------H-------HHHTSHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHcCCccccH-----------------HH-------------H-------HHHHHcCcHHHHHHHHcCCCHHHH
Confidence 7777655432211000 00 0 011123457888888888888888
Q ss_pred HHHHHHHhccCCC---------ccHHHHHHHhhcCCC------CHHHHHHHHHHHhhcC--C---------ccHHHHHHH
Q psy10052 356 HELAYCLGQMKDS---------DANDILRQVLEDKSQ------EPMVRHEAAEALGAIG--D---------KSSISILEK 409 (500)
Q Consensus 356 ~~a~~aL~~l~~~---------~~~~~L~~~l~~~~~------~~~vR~~a~~aL~~~~--~---------~~~~~~L~~ 409 (500)
..++++|+++... .+++.|+.+|.+.++ ...+...|+.+|+++- + ...++.|..
T Consensus 373 ~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~ 452 (584)
T 3l6x_A 373 KAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVL 452 (584)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHH
Confidence 8888888887543 268899999876532 3678889999998762 2 357899999
Q ss_pred hhcCC--CHhHHHHHHHHHHHhhh
Q psy10052 410 YAQDP--VKEVSETCYLALKRIQF 431 (500)
Q Consensus 410 ~l~d~--~~~vr~~A~~aL~~l~~ 431 (500)
++.+. .+.++..|++.|..|-.
T Consensus 453 LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 453 INKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCChHHHHHHHHHHHHHHc
Confidence 99775 88999999999998853
No 45
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.56 E-value=3.2e-12 Score=129.10 Aligned_cols=345 Identities=13% Similarity=0.074 Sum_probs=222.4
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHccCCCHHHHHHHHHHHHccCC----
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADESALLKHELAYCLGQMKD---- 67 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~---- 67 (500)
.+..++.|+.+|.+++.. ++..|+..|..+.. ...++.|+++|+++++.++..|+++|+.+..
T Consensus 46 ~~~~i~~LV~~L~s~~~~--~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDA--VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCCCHH--HHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 356799999999998865 89999999987642 2478999999999999999999999998853
Q ss_pred --------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC---------hhhHHHHHHHh------------------c
Q psy10052 68 --------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD---------KSSISILEKYA------------------Q 112 (500)
Q Consensus 68 --------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~---------~~~~~~L~~~l------------------~ 112 (500)
..+++.|+.+|.... +..++..++.+|..+.. ...++.|++++ .
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 246899999999743 68899999988877653 13578888866 1
Q ss_pred CCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcC----CCcCHHHHHHHHHHHHcCC
Q psy10052 113 DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLN----ENEDLFMRYKAMFKLRDIN 188 (500)
Q Consensus 113 d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d----~~~~~~~r~~A~~~L~~~~ 188 (500)
.++..|+..|+.+|.++..........+... ...++.|+.++.+ .+.+......++.+|.++.
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-------------~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLREC-------------DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-------------TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-------------CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 2368999999999999975432100000000 2346677777742 2223335566666665533
Q ss_pred Ch--hhHH---HHHhhccCCC--HhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC---------
Q psy10052 189 SV--ESTL---ALTEGLSHGS--SLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIA--------- 252 (500)
Q Consensus 189 ~~--~~i~---~l~~~L~~~~--~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------- 252 (500)
.. ..++ .+.....+.+ +.++ -..-+..+.++.+++.|+.++.+. .++.++..|+.+|.++.
T Consensus 270 ~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~Gve~L~~~~~v~~Ll~LL~~s-~~~~v~E~Aa~AL~nL~ag~~~~~~~ 346 (584)
T 3l6x_A 270 YQVHREIPQAERYQEAAPNVANNTGTS--PARGYELLFQPEVVRIYISLLKES-KTPAILEASAGAIQNLCAGRWTYGRY 346 (584)
T ss_dssp TTHHHHSTTCCC--------------C--CCCGGGGGGSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred ccccccccchhhhhhhccccccccccc--CchhHHHHhcccHHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCccccHH
Confidence 21 0000 0000000000 0000 000011122345577888888754 36889999999997662
Q ss_pred ------CchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHH
Q psy10052 253 ------TPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFR 326 (500)
Q Consensus 253 ------~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~ 326 (500)
...+++.|.+++.+++..++..++.+|+.+........
T Consensus 347 ~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~------------------------------------ 390 (584)
T 3l6x_A 347 IRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE------------------------------------ 390 (584)
T ss_dssp HHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH------------------------------------
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH------------------------------------
Confidence 13468999999999999999999999986654322110
Q ss_pred HHHHHHhcCChhhHHHHHHHhcCC--------CHHHHHHHHHHHhccCC-----------CccHHHHHHHhhcCCCCHHH
Q psy10052 327 ALFTLKNIGGKTAIQCISEAFADK--------SALLKHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMV 387 (500)
Q Consensus 327 a~~~L~~~~~~~~~~~L~~~l~~~--------~~~vr~~a~~aL~~l~~-----------~~~~~~L~~~l~~~~~~~~v 387 (500)
. + ...+++.|+.+|.+. +..+...++++|+++.. ...++.|+.++.+.+..+.+
T Consensus 391 ~---I----~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v 463 (584)
T 3l6x_A 391 L---I----GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKE 463 (584)
T ss_dssp H---H----HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHH
T ss_pred H---H----HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHH
Confidence 0 0 023456666666543 35566677777765522 35799999999875347899
Q ss_pred HHHHHHHHhhcC-CccHHHHHHH
Q psy10052 388 RHEAAEALGAIG-DKSSISILEK 409 (500)
Q Consensus 388 R~~a~~aL~~~~-~~~~~~~L~~ 409 (500)
+..|+.+|.++- ..+....+.+
T Consensus 464 ~k~Aa~vL~nl~~~~elr~~~kk 486 (584)
T 3l6x_A 464 VRAAALVLQTIWGYKELRKPLEK 486 (584)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999874 4444444443
No 46
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.55 E-value=1.8e-12 Score=134.21 Aligned_cols=390 Identities=14% Similarity=0.100 Sum_probs=229.8
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc----hHHHHHHHc--cCCCHHHHHHHHHHHHccC--------CCccH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKT----AIQCISEAF--ADESALLKHELAYCLGQMK--------DSDAN 71 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~----~~~~L~~~l--~~~~~~vR~~a~~~L~~~~--------~~~~~ 71 (500)
.++.+.+-|+|+++. +|..|++.|+.++.++ ..+.+.+++ .|++|.||..|+.++..+- .....
T Consensus 112 ~iN~l~kDl~~~n~~--ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 112 INNAIKNDLASRNPT--FMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHHSCCHH--HHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHHhcCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 355666777777764 7777777777777654 334455666 6777777777777766541 12556
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCChh------hHHHHHH----HhcCC-------------CHHHHHHHHHHHHH
Q psy10052 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKS------SISILEK----YAQDP-------------VKEVSETCYLALKR 128 (500)
Q Consensus 72 ~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~------~~~~L~~----~l~d~-------------~~~vr~~a~~aL~~ 128 (500)
+.|.++|.|. |+.|+..|+.++..+.... .++.++. ++.+. ++..+...+..|+.
T Consensus 190 ~~l~~lL~d~--d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 190 SRVVHLLNDQ--HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHHHHhCCC--CccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 7777777766 6777777777777664311 2333333 22211 56777777777766
Q ss_pred hchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCC---------CcCHHHHHHHHHHHHcCCCh-----hhHH
Q psy10052 129 IQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNE---------NEDLFMRYKAMFKLRDINSV-----ESTL 194 (500)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~---------~~~~~~r~~A~~~L~~~~~~-----~~i~ 194 (500)
+.......... .+ ...+..++..+.+. +....+...++.++..+... .++.
T Consensus 268 ~~~~~d~~~~~-------------~l--~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~ 332 (621)
T 2vgl_A 268 YPPPEDPAVRG-------------RL--TECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACN 332 (621)
T ss_dssp SSSCSSHHHHH-------------HH--HHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred hCCCCCHHHHH-------------HH--HHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 65311000000 00 00122233222111 11124666677766665432 3567
Q ss_pred HHHhhccCCCHhHHHHHHHHHhccCCC--------CcHHHHHHHhh-ccCCCHHHHHHHHHHHhhcCCch----HHHHHH
Q psy10052 195 ALTEGLSHGSSLYRHEIAFVLGQMQNP--------SSIPALTSALE-DQTQNEMVRHECAEALGAIATPE----CYDVLR 261 (500)
Q Consensus 195 ~l~~~L~~~~~~vr~~a~~aL~~~~~~--------~~i~~L~~~l~-~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~ 261 (500)
.|..++.++++.+|..++..+..+... .....+..++. + .|+.+|..+++.|..+.++. .+..|.
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d--~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~ 410 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTE--RDVSVRQRAVDLLYAMCDRSNAQQIVAEML 410 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccC--CCHhHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence 788888888999999999999887532 23455666676 5 46889999999999888764 456667
Q ss_pred HhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCH--HHHHHHHHHHHhcCC--h
Q psy10052 262 KYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPL--KERFRALFTLKNIGG--K 337 (500)
Q Consensus 262 ~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~--~~r~~a~~~L~~~~~--~ 337 (500)
.++.+.+..++..++.+++.+.....+ ...+.+..|.+++......+ .+-..-...+.+... .
T Consensus 411 ~yl~~~d~~~~~~~v~~I~~la~k~~~-------------~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~ 477 (621)
T 2vgl_A 411 SYLETADYSIREEIVLKVAILAEKYAV-------------DYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQG 477 (621)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCS-------------STHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCC-------------cHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHH
Confidence 778888899999999998866432211 11223333333333221100 000000111111111 2
Q ss_pred hhHHHHHHHhcCCC--HHHHHHHHHHHhccCCC----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--CccH
Q psy10052 338 TAIQCISEAFADKS--ALLKHELAYCLGQMKDS----------DANDILRQVLEDKSQEPMVRHEAAEALGAIG--DKSS 403 (500)
Q Consensus 338 ~~~~~L~~~l~~~~--~~vr~~a~~aL~~l~~~----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~~~~ 403 (500)
.++..|.+.+.++. ..+-..++|.+|++++. +.+..+.+.+... ++.+|..++.++.++. .++.
T Consensus 478 ~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~--~~~v~~~~Lta~~Kl~~~~p~~ 555 (621)
T 2vgl_A 478 YAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLC--SVPTRALLLSTYIKFVNLFPEV 555 (621)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHChHH
Confidence 24556677777653 34445677999999741 1233444444443 7999999999998874 2333
Q ss_pred HHHHHH----hhc--CCCHhHHHHHHHHHHHhhh
Q psy10052 404 ISILEK----YAQ--DPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 404 ~~~L~~----~l~--d~~~~vr~~A~~aL~~l~~ 431 (500)
.+.+.. +.. |.+.+||..|.+.+.-+..
T Consensus 556 ~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 556 KATIQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 344433 335 8999999999999888754
No 47
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.54 E-value=3.2e-12 Score=127.81 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=127.4
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhc-CCCHHHHHHHHHHHHHhchhccchh
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQ-DPVKEVSETCYLALKRIQFVTEEDK 137 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~ 137 (500)
.++.|+++|.++ ++.++..|+++|..+.. .+.+|.|+++|. ++++.++..|+++|.++........
T Consensus 45 ~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 45 GICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp HHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 356666666654 55666666666665431 256889999998 8889999999999999875422111
Q ss_pred hccccCcCCCCCCCCCCCCcccHHHHHHHhc--------CCC------cCHHHHHHHHHHHHcCCC-----------hhh
Q psy10052 138 QKDTGNIYGSVDPTPPLDDVSDINKLKEILL--------NEN------EDLFMRYKAMFKLRDINS-----------VES 192 (500)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~--------d~~------~~~~~r~~A~~~L~~~~~-----------~~~ 192 (500)
. +. .+.++.|+.++. +.+ .+..+...|+.+|.++.. +.+
T Consensus 123 ~---------------i~-~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~ 186 (457)
T 1xm9_A 123 E---------------LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186 (457)
T ss_dssp H---------------HH-HHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTH
T ss_pred H---------------HH-hccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCC
Confidence 0 00 235888888883 111 234455577777766533 156
Q ss_pred HHHHHhhccC------CCHhHHHHHHHHHhccC-----------------------------------------------
Q psy10052 193 TLALTEGLSH------GSSLYRHEIAFVLGQMQ----------------------------------------------- 219 (500)
Q Consensus 193 i~~l~~~L~~------~~~~vr~~a~~aL~~~~----------------------------------------------- 219 (500)
++.|..+|.+ ++..+...++..|..+.
T Consensus 187 i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (457)
T 1xm9_A 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266 (457)
T ss_dssp HHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------C
T ss_pred HHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCc
Confidence 7778877763 33334433333322211
Q ss_pred --------------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC----------------chHHHHHHHhhcCCcH
Q psy10052 220 --------------NPSSIPALTSALEDQTQNEMVRHECAEALGAIAT----------------PECYDVLRKYLSDEKV 269 (500)
Q Consensus 220 --------------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------------~~~~~~L~~~l~~~~~ 269 (500)
+.+.++.|..+|.+. .++.++..|+++|+++.. ..++|.|.+++.+++.
T Consensus 267 ~~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~ 345 (457)
T 1xm9_A 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKS-KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345 (457)
T ss_dssp CCCCSSCCGGGGGGSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCH
T ss_pred cccccCchHHHHHhCcchHHHHHHHHhhc-CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCH
Confidence 123467778888765 468899999999977642 2457899999999999
Q ss_pred HHHHHHHHHhhhccc
Q psy10052 270 VVRQSCEIALDMCDY 284 (500)
Q Consensus 270 ~vr~~a~~al~~l~~ 284 (500)
.++..++++|..+..
T Consensus 346 ~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 346 DVVRSGASLLSNMSR 360 (457)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999987754
No 48
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.53 E-value=1.2e-11 Score=123.57 Aligned_cols=135 Identities=10% Similarity=0.090 Sum_probs=100.3
Q ss_pred hhhHHHHHHHhc-CCCHHHHHHHHHHHhccCC----------------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC
Q psy10052 337 KTAIQCISEAFA-DKSALLKHELAYCLGQMKD----------------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG 399 (500)
Q Consensus 337 ~~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~----------------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~ 399 (500)
..+++.|+.+|. .+++.++..++++|+++.. ...++.|++++.+. +..++..|+++|.++.
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~--~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMS 359 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC--CHhHHHHHHHHHHHHh
Confidence 456777888886 4578999999999988742 34688999999887 7999999999999874
Q ss_pred C---------ccHHHHHHHhhcCCC------HhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHH
Q psy10052 400 D---------KSSISILEKYAQDPV------KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLK 464 (500)
Q Consensus 400 ~---------~~~~~~L~~~l~d~~------~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 464 (500)
. ...++.|..++...+ ..+...++.+|+++-.......... .....++.|.
T Consensus 360 ~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i--------------~~~g~l~~L~ 425 (457)
T 1xm9_A 360 RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY--------------FSSSMLNNII 425 (457)
T ss_dssp TSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHH--------------CCHHHHHHHH
T ss_pred cCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHH--------------HHcCCHHHHH
Confidence 3 246788889987653 3688889999998864332211111 2358899999
Q ss_pred HHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 465 EILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 465 ~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
+++..+ ....++..|.+.|.++=
T Consensus 426 ~L~~~~-~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 426 NLCRSS-ASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTS
T ss_pred HHHcCC-CcHHHHHHHHHHHHHHH
Confidence 999755 14469999999999873
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.52 E-value=5.2e-10 Score=115.80 Aligned_cols=328 Identities=12% Similarity=0.106 Sum_probs=216.2
Q ss_pred HhHHHHHHhhcC-CCCCHHHHHHHHHHHHh---cCC--cchHHHHHHHccCCCHHHHHHHHHHHHccCCCc------cHH
Q psy10052 5 EKILLIGQVLKD-SSKPLKERFRALFTLKN---IGG--KTAIQCISEAFADESALLKHELAYCLGQMKDSD------AND 72 (500)
Q Consensus 5 ~~~~~L~~~L~~-~~~~~~~R~~A~~~L~~---~~~--~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~------~~~ 72 (500)
..+..+.+.|++ ++.....|..++.-+-- .|. .......++++.+++...|+-.--++..+.... ++.
T Consensus 35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN 114 (621)
T 2vgl_A 35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINN 114 (621)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 345566677763 22222355555554443 243 246778888999999999988888888775432 356
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCChhh----HHHHHHHh--cCCCHHHHHHHHHHHHHhchhccchhhccccCcCC
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAIGDKSS----ISILEKYA--QDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYG 146 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~----~~~L~~~l--~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~ 146 (500)
.+.+-|.++ ++.+|..|+++|+.+..++. .+.+.+++ .|.++.||..|+.++.++-.......
T Consensus 115 ~l~kDl~~~--n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~--------- 183 (621)
T 2vgl_A 115 AIKNDLASR--NPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV--------- 183 (621)
T ss_dssp HHHHHHHSC--CHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---------
T ss_pred HHHHhcCCC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---------
Confidence 667777877 79999999999999998754 45677888 99999999999999998865321100
Q ss_pred CCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC--hh----hHHHHH----hhccC-------------C
Q psy10052 147 SVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS--VE----STLALT----EGLSH-------------G 203 (500)
Q Consensus 147 ~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~--~~----~i~~l~----~~L~~-------------~ 203 (500)
.+ +..++.+.++|.| .++.++..|+.++..+.. ++ .++.+. +.+.. +
T Consensus 184 --~~------~~~~~~l~~lL~d--~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 184 --PM------GDWTSRVVHLLND--QHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp --CC------CSCHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred --Cc------hhHHHHHHHHhCC--CCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 00 2458889999954 567789999888877642 21 233333 33221 1
Q ss_pred CHhHHHHHHHHHhccCCC---CcHH----HHHHHhh---cc---------CCCHHHHHHHHHHHhhcCCc-----hHHHH
Q psy10052 204 SSLYRHEIAFVLGQMQNP---SSIP----ALTSALE---DQ---------TQNEMVRHECAEALGAIATP-----ECYDV 259 (500)
Q Consensus 204 ~~~vr~~a~~aL~~~~~~---~~i~----~L~~~l~---~~---------~~~~~vr~~a~~aL~~~~~~-----~~~~~ 259 (500)
+|..+...++.++.+... .... .|..++. +. +....|..+++.++..+... .+...
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~ 333 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQ 333 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 688999999999988753 2122 2222221 11 11237888888888777643 25677
Q ss_pred HHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhcCChh
Q psy10052 260 LRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLK-DSSKPLKERFRALFTLKNIGGKT 338 (500)
Q Consensus 260 L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~-~~~~~~~~r~~a~~~L~~~~~~~ 338 (500)
|..++.++++.+|..++.++..+....... .. + ......+...+. +++ ..+|..++..|..+.++.
T Consensus 334 L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~---~-------~~~~~~i~~~L~~d~d--~~Ir~~aL~lL~~l~~~~ 400 (621)
T 2vgl_A 334 LGQFLQHRETNLRYLALESMCTLASSEFSH-EA---V-------KTHIETVINALKTERD--VSVRQRAVDLLYAMCDRS 400 (621)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HH---H-------HTTHHHHHHHHTTCCC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHhccCcH-HH---H-------HHHHHHHHHHhccCCC--HhHHHHHHHHHHHHcChh
Confidence 888898899999999999998775443210 00 0 011224445555 544 568999999998888765
Q ss_pred hHH----HHHHHhcCCCHHHHHHHHHHHhccC
Q psy10052 339 AIQ----CISEAFADKSALLKHELAYCLGQMK 366 (500)
Q Consensus 339 ~~~----~L~~~l~~~~~~vr~~a~~aL~~l~ 366 (500)
-+. .|...+.+.+...|..++.+++.+.
T Consensus 401 Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 444 4455666778888888888877663
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.51 E-value=2.4e-12 Score=117.95 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=128.7
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHccCC-----------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh------
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------ 101 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~------ 101 (500)
.++.|++.|+++++.+|..|+++|+.+.. ...++.|+++|+++ ++.+|..++++|+.+...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHH
Confidence 35556666666666666666666665522 13567777777776 677777777777777643
Q ss_pred -----hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHH
Q psy10052 102 -----SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFM 176 (500)
Q Consensus 102 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~ 176 (500)
+.++.|+.+++++++.+|..|+++|+++..........+.. .+.++.|++++.+ .++.+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------------~~~i~~L~~~l~~--~~~~~ 144 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--------------AGGVEVLVKLLTS--TDSEV 144 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--------------TTHHHHHHHHTTC--SCHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--------------CCCHHHHHHHHcC--CCHHH
Confidence 56888999999999999999999999987321100000000 1234445555532 22334
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC---
Q psy10052 177 RYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT--- 253 (500)
Q Consensus 177 r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--- 253 (500)
+..++.+|+++... ++..+... ...+.++.|+.++.+ .++.++..++.+|+.+..
T Consensus 145 ~~~a~~~L~~l~~~-------------~~~~~~~~-------~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~ 202 (252)
T 4hxt_A 145 QKEAARALANIASG-------------PDEAIKAI-------VDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPT 202 (252)
T ss_dssp HHHHHHHHHHHTTS-------------CHHHHHHH-------HHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSBH
T ss_pred HHHHHHHHHHHHcC-------------CHHHHHHH-------HHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCCH
Confidence 55555444443320 00000000 012467777777775 457788888888877653
Q ss_pred --------chHHHHHHHhhcCCcHHHHHHHHHHhhhcccc
Q psy10052 254 --------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYE 285 (500)
Q Consensus 254 --------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~ 285 (500)
.++++.|.+++.++++.++..+..+|+.+...
T Consensus 203 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 24688999999999999999999999876543
No 51
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.50 E-value=4.1e-12 Score=116.39 Aligned_cols=167 Identities=21% Similarity=0.265 Sum_probs=127.0
Q ss_pred CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc-----------hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHh
Q psy10052 222 SSIPALTSALEDQTQNEMVRHECAEALGAIATP-----------ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL 290 (500)
Q Consensus 222 ~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~ 290 (500)
+.++.|++++.+ .++.++..++++|+.+... ++++.|..++.++++.++..++.+|+.+.......
T Consensus 44 g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~- 120 (252)
T 4hxt_A 44 GGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA- 120 (252)
T ss_dssp THHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-
T ss_pred CCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-
Confidence 567778887776 3477888888888777654 57889999999999999999999998765332210
Q ss_pred HHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCC--
Q psy10052 291 QYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDS-- 368 (500)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~-- 368 (500)
+.. +. ....++.|++++.++++.++..++++|+++...
T Consensus 121 ---------------------------------~~~----~~---~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 121 ---------------------------------IKA----IV---DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp ---------------------------------HHH----HH---HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred ---------------------------------HHH----HH---HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 000 00 123577778888888888888888888877642
Q ss_pred ---------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC-----------ccHHHHHHHhhcCCCHhHHHHHHHHHHH
Q psy10052 369 ---------DANDILRQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKR 428 (500)
Q Consensus 369 ---------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 428 (500)
.+++.|+.++.+. ++.+|..|+.+|+++.. ...++.|..+++++++.+|..|+++|++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 3678888888876 68999999999988864 2467899999999999999999999999
Q ss_pred hhhhh
Q psy10052 429 IQFVT 433 (500)
Q Consensus 429 l~~~~ 433 (500)
+....
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98643
No 52
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.49 E-value=1.3e-14 Score=118.89 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=97.5
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCC
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPV 115 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~ 115 (500)
.+...+.|.+.|+|+++.+|..|+++|+.+++.. ++.|.++|+|+ ++.||..|+++||.++++..++.|.++++|++
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~L~~~L~d~--~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~ 86 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA-FEPLLESLSNE--DWRIRGAAAWIIGNFQDERAVEPLIKLLEDDS 86 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSSTT-HHHHHHGGGCS--CHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCC
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-HHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCC
Confidence 4567889999999999999999999999998876 69999999988 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcC
Q psy10052 116 KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 187 (500)
Q Consensus 116 ~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~ 187 (500)
+.||..|+++|++++. +..++.|.+.+.| ++..+|..|+.+|+++
T Consensus 87 ~~VR~~A~~aL~~~~~-------------------------~~a~~~L~~~l~d--~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 87 GFVRSGAARSLEQIGG-------------------------ERVRAAMEKLAET--GTGFARKVAVNYLETH 131 (131)
T ss_dssp THHHHHHHHHHHHHCS-------------------------HHHHHHHHHHTTS--CCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCc-------------------------HHHHHHHHHHHhC--CCHHHHHHHHHHHHhC
Confidence 9999999999999985 3457778888854 3456788887777653
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.48 E-value=3e-12 Score=117.46 Aligned_cols=195 Identities=21% Similarity=0.244 Sum_probs=131.0
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHcc-----------CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQM-----------KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 100 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~-----------~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------ 100 (500)
...+.+.+.|.++++.+|..|++.|..+ .....++.|+++|+++ ++.+|..|+++|+.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHH
Confidence 3456666666666666666666666431 1234677788888777 67788888888887764
Q ss_pred -----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHH
Q psy10052 101 -----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLF 175 (500)
Q Consensus 101 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~ 175 (500)
.+.++.|+.+++++++.+|..|+++|+++........
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-------------------------------------- 131 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI-------------------------------------- 131 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH--------------------------------------
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH--------------------------------------
Confidence 2478899999999999999999999999874321110
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCC-----------CCcHHHHHHHhhccCCCHHHHHHH
Q psy10052 176 MRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQN-----------PSSIPALTSALEDQTQNEMVRHEC 244 (500)
Q Consensus 176 ~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~-----------~~~i~~L~~~l~~~~~~~~vr~~a 244 (500)
. . +. ....++.|+.+|+++++.+|..++.+|+.+.. .+.++.|+.++.+ .++.++..+
T Consensus 132 --~-~---~~---~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a 200 (252)
T 4db8_A 132 --Q-A---VI---DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEA 200 (252)
T ss_dssp --H-H---HH---HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHH
T ss_pred --H-H---HH---HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHH
Confidence 0 0 00 01234455555555555555555555544432 4568888888876 357888888
Q ss_pred HHHHhhcCC-----------chHHHHHHHhhcCCcHHHHHHHHHHhhhcc
Q psy10052 245 AEALGAIAT-----------PECYDVLRKYLSDEKVVVRQSCEIALDMCD 283 (500)
Q Consensus 245 ~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~ 283 (500)
+.+|+.+.. .++++.|..++.++++.+|..|..+|+.+.
T Consensus 201 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 888887752 246788888999999999999999998653
No 54
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.45 E-value=4.8e-12 Score=116.15 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=142.1
Q ss_pred cccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCC
Q psy10052 157 VSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQ 236 (500)
Q Consensus 157 ~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~ 236 (500)
....+.+.+.|.+++.. ++..|+..|..+-. . +...+.. +...+.++.|++++.+.
T Consensus 11 ~~~~~~~~~~L~s~~~~--~~~~a~~~L~~~l~------------~-~~~~~~~-------~~~~g~i~~L~~lL~~~-- 66 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQ--EQLSATRKFSQILS------------D-GNEQIQA-------VIDAGALPALVQLLSSP-- 66 (252)
T ss_dssp TCSHHHHHHHHHSSCSS--HHHHHHHHHHHHHH------------H-HHHHHHH-------HHHTTHHHHHHHGGGCS--
T ss_pred cchHHHHHHHHcCCCHH--HHHHHHHHHHHHHc------------C-CCchHHH-------HHHcCcHHHHHHHHcCC--
Confidence 34577777777655443 56666666643211 0 0011111 11235677777777763
Q ss_pred CHHHHHHHHHHHhhcCC-----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChH
Q psy10052 237 NEMVRHECAEALGAIAT-----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEE 305 (500)
Q Consensus 237 ~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~ 305 (500)
++.++..++++|+.+.. .++++.|..+++++++.++..++.+|+.+.......
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---------------- 130 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ---------------- 130 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH----------------
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH----------------
Confidence 46777777777777664 247899999999999999999999998765443221
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------CccHHHH
Q psy10052 306 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD-----------SDANDIL 374 (500)
Q Consensus 306 ~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~-----------~~~~~~L 374 (500)
... +.....++.|+.++.++++.+|..++++|+++.. ..+++.|
T Consensus 131 -------------------~~~------~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 185 (252)
T 4db8_A 131 -------------------IQA------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185 (252)
T ss_dssp -------------------HHH------HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred -------------------HHH------HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH
Confidence 000 0012356777777777778888888888887764 3468889
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhcCC-----------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q psy10052 375 RQVLEDKSQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRIQ 430 (500)
Q Consensus 375 ~~~l~~~~~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 430 (500)
++++.+. ++.+|..|+.+|+++.. ...++.|..++.+.++.+|..|+++|.++.
T Consensus 186 ~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 186 VQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 9999876 78999999999998852 246788999999999999999999999874
No 55
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.44 E-value=2.6e-11 Score=119.71 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=145.0
Q ss_pred CcHHHHHHHhhc---------cCCCHHHHHHHHHHHhhcCC------------chHHHHHHHhhcCCcHHHHHHHHHHhh
Q psy10052 222 SSIPALTSALED---------QTQNEMVRHECAEALGAIAT------------PECYDVLRKYLSDEKVVVRQSCEIALD 280 (500)
Q Consensus 222 ~~i~~L~~~l~~---------~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~al~ 280 (500)
++++.|+.++.. .+.++.++..|+++|.++.. .+++|.|..++.+++..++..++++|.
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 268 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 678889888842 11246789999999976542 234899999999999999999999999
Q ss_pred hccccc-hhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC------------ChhhHHHHHHHh
Q psy10052 281 MCDYEN-SVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG------------GKTAIQCISEAF 347 (500)
Q Consensus 281 ~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~------------~~~~~~~L~~~l 347 (500)
.+.+.. ......... ...++.|.+++.... +..++..++.+|.++. ...+++.|+.+|
T Consensus 269 nLs~~~~~~~k~~I~~--------~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 269 NLSWRADVNSKKTLRE--------VGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp HHTSSCCHHHHHHHHH--------TTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHH--------cCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 887642 211111111 234678888755432 2345665555554332 235788899999
Q ss_pred cCCCH----HHHHHHHHHHhccCC--------------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--Cc------
Q psy10052 348 ADKSA----LLKHELAYCLGQMKD--------------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG--DK------ 401 (500)
Q Consensus 348 ~~~~~----~vr~~a~~aL~~l~~--------------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~~------ 401 (500)
.+.+. .++..++++|.++.. ..+++.|+.++.+. +..++..|+.+|+++. ++
T Consensus 340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i 417 (458)
T 3nmz_A 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEAL 417 (458)
T ss_dssp TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 86644 488888888877652 23689999999876 7899999999999875 22
Q ss_pred ---cHHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q psy10052 402 ---SSISILEKYAQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 402 ---~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
..++.|..++.++++.++..|+++|.+|...
T Consensus 418 ~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 418 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 5689999999999999999999999999764
No 56
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.44 E-value=2.5e-11 Score=119.83 Aligned_cols=315 Identities=14% Similarity=0.107 Sum_probs=180.7
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHccC------------CCHHHHHHHHHHHHcc
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGG-------KTAIQCISEAFAD------------ESALLKHELAYCLGQM 65 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-------~~~~~~L~~~l~~------------~~~~vR~~a~~~L~~~ 65 (500)
+.++.|...+.+.+.. .-...+..+..... ..+++.|+++|+. .++.+|.+|+|+|..+
T Consensus 32 ~~~~~l~~~~~~~~~~--~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKD--DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -------------CCH--HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHH--HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 3456777777777664 33333333333221 2478899999974 2379999999999987
Q ss_pred C--CCc---------cH----------HHHHHHhhccCCCHH-----HHH-------HHHHHHHhcCCh----------h
Q psy10052 66 K--DSD---------AN----------DILRQVLEDKSQEPM-----VRH-------EAAEALGAIGDK----------S 102 (500)
Q Consensus 66 ~--~~~---------~~----------~~L~~~L~~~~~d~~-----vr~-------~a~~aL~~~~~~----------~ 102 (500)
- .++ ++ +.+++++....++.. |+. .|+++|+++... +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G 189 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG 189 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 2 221 12 333344443310111 555 899999988642 5
Q ss_pred hHHHHHHHhc-----------CCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCC
Q psy10052 103 SISILEKYAQ-----------DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNEN 171 (500)
Q Consensus 103 ~~~~L~~~l~-----------d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~ 171 (500)
.++.|+.++. +.++.++..|+++|.++..........+.. ..+.++.|+.+|.+
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~-------------~~GaIp~LV~LL~s-- 254 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS-------------MKGCMRALVAQLKS-- 254 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------------CHHHHHHHHHGGGC--
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHH-------------cCCcHHHHHHHHhC--
Confidence 6788888884 134778999999999987432110000000 02235556666632
Q ss_pred cCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhc
Q psy10052 172 EDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAI 251 (500)
Q Consensus 172 ~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~ 251 (500)
.+..++..|+.+|+++.. ..++..|..++ ..+.+|.|+++|... .++.++..++.+|.++
T Consensus 255 ~~~~v~~~A~~aL~nLs~------------~~~~~~k~~I~-------~~GaI~~LV~lLl~s-~~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 255 ESEDLQQVIASVLRNLSW------------RADVNSKKTLR-------EVGSVKALMECALEV-KKESTLKSVLSALWNL 314 (458)
T ss_dssp SCHHHHHHHHHHHHHHTS------------SCCHHHHHHHH-------HTTHHHHHHHHHTTC-CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc------------CCCHHHHHHHH-------HcCCHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 233455555555554321 01111222111 125678888875432 2567777777776544
Q ss_pred C------------CchHHHHHHHhhcCCcH----HHHHHHHHHhhhccc---cchhHhHHHHhhhccCCCChHHHHHHHH
Q psy10052 252 A------------TPECYDVLRKYLSDEKV----VVRQSCEIALDMCDY---ENSVELQYADTLCKFKMIPEEKILLIGQ 312 (500)
Q Consensus 252 ~------------~~~~~~~L~~~l~~~~~----~vr~~a~~al~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 312 (500)
. ..++++.|.+++.+.+. .++..+..+|..+.. ....
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~------------------------ 370 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED------------------------ 370 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH------------------------
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH------------------------
Confidence 3 23578888898876643 477777777765432 1110
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----------ccHHHHHHHhhcC
Q psy10052 313 VLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDS-----------DANDILRQVLEDK 381 (500)
Q Consensus 313 ~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~ 381 (500)
.|.. +. ...+++.|+.+|.+.+..++..++++|+++... .+++.|++++...
T Consensus 371 ----------~~~~----i~---~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 371 ----------HRQI----LR---ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 433 (458)
T ss_dssp ----------HHHH----HH---HTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred ----------HHHH----HH---HcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 1111 11 134688899999998999999999999888632 3689999999876
Q ss_pred CCCHHHHHHHHHHHhhcC
Q psy10052 382 SQEPMVRHEAAEALGAIG 399 (500)
Q Consensus 382 ~~~~~vR~~a~~aL~~~~ 399 (500)
+..+|..|+.+|.++.
T Consensus 434 --~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 434 --HKMIAMGSAAALRNLM 449 (458)
T ss_dssp --SHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 7999999999998873
No 57
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.37 E-value=7.3e-14 Score=125.44 Aligned_cols=186 Identities=22% Similarity=0.176 Sum_probs=137.8
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHH
Q psy10052 12 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEA 91 (500)
Q Consensus 12 ~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a 91 (500)
.++.|+++. +|..|+..|. ...|..+++|+++.||..++..|. .+.|..+++|+ ++.||..+
T Consensus 57 ~ll~d~~~~--VR~~AA~~l~-------~~~l~~L~~D~~~~VR~~aA~~L~-------~~~L~~ll~D~--d~~VR~~a 118 (244)
T 1lrv_A 57 QYLADPFWE--RRAIAVRYSP-------VEALTPLIRDSDEVVRRAVAYRLP-------REQLSALMFDE--DREVRITV 118 (244)
T ss_dssp GGTTCSSHH--HHHHHHTTSC-------GGGGGGGTTCSSHHHHHHHHTTSC-------SGGGGGTTTCS--CHHHHHHH
T ss_pred HHhcCCCHH--HHHHHHHhCC-------HHHHHHHccCcCHHHHHHHHHHCC-------HHHHHHHHcCC--CHHHHHHH
Confidence 566788765 9999988652 234667778999999999997642 14577888888 89999999
Q ss_pred HHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCC
Q psy10052 92 AEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNEN 171 (500)
Q Consensus 92 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~ 171 (500)
+..+ . . +.|..+++|+++.||..++.. +.. +.+..+++ +
T Consensus 119 A~~l---~-~---~~L~~L~~D~d~~VR~~aA~~---l~~-----------------------------~~l~~l~~--D 157 (244)
T 1lrv_A 119 ADRL---P-L---EQLEQMAADRDYLVRAYVVQR---IPP-----------------------------GRLFRFMR--D 157 (244)
T ss_dssp HHHS---C-T---GGGGGGTTCSSHHHHHHHHHH---SCG-----------------------------GGGGGTTT--C
T ss_pred HHhC---C-H---HHHHHHHcCCCHHHHHHHHHh---cCH-----------------------------HHHHHHHc--C
Confidence 9864 2 2 346677899999999999874 221 11333443 4
Q ss_pred cCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhc
Q psy10052 172 EDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAI 251 (500)
Q Consensus 172 ~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~ 251 (500)
+++.||..++..+. . +.+..+++|+++.||..++..+ ..+.|..++.| .++.||..++..++
T Consensus 158 ~d~~VR~~aa~~l~----~---~ll~~ll~D~d~~VR~aaa~~l-------~~~~L~~Ll~D--~d~~VR~~aa~~l~-- 219 (244)
T 1lrv_A 158 EDRQVRKLVAKRLP----E---ESLGLMTQDPEPEVRRIVASRL-------RGDDLLELLHD--PDWTVRLAAVEHAS-- 219 (244)
T ss_dssp SCHHHHHHHHHHSC----G---GGGGGSTTCSSHHHHHHHHHHC-------CGGGGGGGGGC--SSHHHHHHHHHHSC--
T ss_pred CCHHHHHHHHHcCC----H---HHHHHHHcCCCHHHHHHHHHhC-------CHHHHHHHHcC--CCHHHHHHHHHcCC--
Confidence 57789999888632 1 3455677899999999999874 24567788887 57999999999985
Q ss_pred CCchHHHHHHHhhcCCcHHHHHHHHHHhh
Q psy10052 252 ATPECYDVLRKYLSDEKVVVRQSCEIALD 280 (500)
Q Consensus 252 ~~~~~~~~L~~~l~~~~~~vr~~a~~al~ 280 (500)
.+.|..+ .|+++.||..+...||
T Consensus 220 -----~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 -----LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -----HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -----HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 4667666 9999999999887765
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.32 E-value=7.9e-11 Score=104.70 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=67.9
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCC-----------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-----
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD----- 100 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----- 100 (500)
+...+.|..+|.++++.+|..|+++|+.+.. ...++.|+++|.++ ++.+|..|+++|+.+..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHH
Confidence 4567788888888888888888888887742 13567777888777 67788888888887752
Q ss_pred ------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 101 ------KSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 101 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
.+.++.|+.+++++++.+|..|+++|+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 135677778888888888888888888775
No 59
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.31 E-value=1.1e-10 Score=103.80 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=118.4
Q ss_pred CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHh
Q psy10052 222 SSIPALTSALEDQTQNEMVRHECAEALGAIAT-----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL 290 (500)
Q Consensus 222 ~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~ 290 (500)
...+.|..++.+ .++.+|..|+++|+.+.. .++++.|.+++.++++.++..++.+|+.+.......
T Consensus 12 ~~~~~l~~LL~s--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~- 88 (210)
T 4db6_A 12 SELPQMVQQLNS--PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ- 88 (210)
T ss_dssp -CHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-
T ss_pred chhHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH-
Confidence 445555555554 345555555555555442 246889999999999999999999998765432211
Q ss_pred HHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC---
Q psy10052 291 QYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD--- 367 (500)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~--- 367 (500)
+.. +. ....++.|+.+|.++++.+|..++++|+++..
T Consensus 89 ---------------------------------~~~----i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 128 (210)
T 4db6_A 89 ---------------------------------IQA----VI---DAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128 (210)
T ss_dssp ---------------------------------HHH----HH---HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred ---------------------------------HHH----HH---HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH
Confidence 000 00 12357788888888888888888888888763
Q ss_pred --------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc-----------cHHHHHHHhhcCCCHhHHHHHHHHHHH
Q psy10052 368 --------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-----------SSISILEKYAQDPVKEVSETCYLALKR 428 (500)
Q Consensus 368 --------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 428 (500)
...++.|++++.+. ++.+|..|+.+|+++... ..++.|..++.++++.+|..|+++|++
T Consensus 129 ~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 129 EQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 23688899999876 789999999999887542 578999999999999999999999998
Q ss_pred hh
Q psy10052 429 IQ 430 (500)
Q Consensus 429 l~ 430 (500)
+.
T Consensus 207 l~ 208 (210)
T 4db6_A 207 LQ 208 (210)
T ss_dssp HC
T ss_pred Hh
Confidence 85
No 60
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.27 E-value=1e-12 Score=118.03 Aligned_cols=183 Identities=20% Similarity=0.159 Sum_probs=135.6
Q ss_pred CCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHh
Q psy10052 170 ENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALG 249 (500)
Q Consensus 170 ~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~ 249 (500)
.++++.+|..++..|. ...+..+++|+++.||..++..+. .+.|..+++| .++.||..++..+
T Consensus 60 ~d~~~~VR~~AA~~l~-------~~~l~~L~~D~~~~VR~~aA~~L~-------~~~L~~ll~D--~d~~VR~~aA~~l- 122 (244)
T 1lrv_A 60 ADPFWERRAIAVRYSP-------VEALTPLIRDSDEVVRRAVAYRLP-------REQLSALMFD--EDREVRITVADRL- 122 (244)
T ss_dssp TCSSHHHHHHHHTTSC-------GGGGGGGTTCSSHHHHHHHHTTSC-------SGGGGGTTTC--SCHHHHHHHHHHS-
T ss_pred cCCCHHHHHHHHHhCC-------HHHHHHHccCcCHHHHHHHHHHCC-------HHHHHHHHcC--CCHHHHHHHHHhC-
Confidence 3457789999888652 234667778999999999998653 1456677777 5689999998865
Q ss_pred hcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10052 250 AIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALF 329 (500)
Q Consensus 250 ~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~ 329 (500)
. .+.|..+++|+++.||..++..+. . +.+..++.|++ +.+|..++.
T Consensus 123 --~----~~~L~~L~~D~d~~VR~~aA~~l~---~-----------------------~~l~~l~~D~d--~~VR~~aa~ 168 (244)
T 1lrv_A 123 --P----LEQLEQMAADRDYLVRAYVVQRIP---P-----------------------GRLFRFMRDED--RQVRKLVAK 168 (244)
T ss_dssp --C----TGGGGGGTTCSSHHHHHHHHHHSC---G-----------------------GGGGGTTTCSC--HHHHHHHHH
T ss_pred --C----HHHHHHHHcCCCHHHHHHHHHhcC---H-----------------------HHHHHHHcCCC--HHHHHHHHH
Confidence 2 235667789999999999877432 0 12334445544 678988887
Q ss_pred HHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHHHHHHH
Q psy10052 330 TLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEK 409 (500)
Q Consensus 330 ~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~~~L~~ 409 (500)
.+. .+.+..+++|+++.||.+++..+ ..+.|..++.|+ +|.||.+++..++ .+.|..
T Consensus 169 ~l~-------~~ll~~ll~D~d~~VR~aaa~~l-------~~~~L~~Ll~D~--d~~VR~~aa~~l~-------~~~L~~ 225 (244)
T 1lrv_A 169 RLP-------EESLGLMTQDPEPEVRRIVASRL-------RGDDLLELLHDP--DWTVRLAAVEHAS-------LEALRE 225 (244)
T ss_dssp HSC-------GGGGGGSTTCSSHHHHHHHHHHC-------CGGGGGGGGGCS--SHHHHHHHHHHSC-------HHHHHH
T ss_pred cCC-------HHHHHHHHcCCCHHHHHHHHHhC-------CHHHHHHHHcCC--CHHHHHHHHHcCC-------HHHHHH
Confidence 622 24556788999999999999875 235677888887 8999999999976 367777
Q ss_pred hhcCCCHhHHHHHHHHHH
Q psy10052 410 YAQDPVKEVSETCYLALK 427 (500)
Q Consensus 410 ~l~d~~~~vr~~A~~aL~ 427 (500)
+ +|+++.||..+...|+
T Consensus 226 L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 226 L-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp C-CCCCHHHHHHHHCCC-
T ss_pred c-cCCCHHHHHHHHHHhC
Confidence 7 9999999999987765
No 61
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.26 E-value=8.8e-08 Score=98.52 Aligned_cols=437 Identities=11% Similarity=0.031 Sum_probs=269.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---c---chHHHHHH-Hc----c--CCCHHH-HHHHHHHHHcc-------
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG---K---TAIQCISE-AF----A--DESALL-KHELAYCLGQM------- 65 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~---~---~~~~~L~~-~l----~--~~~~~v-R~~a~~~L~~~------- 65 (500)
+..|++.|.-...+..+|..+.-.+.++-. + +.+..+++ ++ . +.++.+ -..++.++-.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~ 249 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSE 249 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHH
Confidence 556677765433334588888887776542 1 12222222 22 1 234433 22333333222
Q ss_pred --CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC---------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhcc
Q psy10052 66 --KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD---------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTE 134 (500)
Q Consensus 66 --~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~ 134 (500)
-+....+.+.+.+...+ +..+..+.++.|...+. ...++.|...+++ ..+|..|+-.|.+++....
T Consensus 250 lfl~e~~~~~l~~~~~~~~-~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~ 326 (778)
T 3opb_A 250 IFLTKGLSKLFKKRVFEEQ-DLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTK 326 (778)
T ss_dssp HHSTTTHHHHHHHHHHSSC-CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGT
T ss_pred HHccccHHHHHHHHHhccc-chHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCC
Confidence 23566788888876543 67777888888877654 2456778888865 4789999999999875331
Q ss_pred chhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC-----------ChhhHHHHHhhccC-
Q psy10052 135 EDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN-----------SVESTLALTEGLSH- 202 (500)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~-----------~~~~i~~l~~~L~~- 202 (500)
... ..+ ....+.+.+.|.+++ ...|..|++.|+... +..++..|+..+++
T Consensus 327 ~~~--------------~si--~~La~~~~~~L~~~~--~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~ 388 (778)
T 3opb_A 327 LTC--------------INL--KQLSEIFINAISRRI--VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQ 388 (778)
T ss_dssp CTT--------------CCH--HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTT
T ss_pred CCc--------------CcH--HHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCC
Confidence 110 000 334566777775543 234889999998754 23578889999885
Q ss_pred CCHhHHHHHHHHHhccCC--C------CcHHHHHHHhhc--c----CCCHHHHHHH-HH-HHhhcCCchHHHHHHHhhcC
Q psy10052 203 GSSLYRHEIAFVLGQMQN--P------SSIPALTSALED--Q----TQNEMVRHEC-AE-ALGAIATPECYDVLRKYLSD 266 (500)
Q Consensus 203 ~~~~vr~~a~~aL~~~~~--~------~~i~~L~~~l~~--~----~~~~~vr~~a-~~-aL~~~~~~~~~~~L~~~l~~ 266 (500)
.+..+.+.++..|.++.. + .-+..|..+.+. + +.++...... .. --..+...++++.|..++++
T Consensus 389 ~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S 468 (778)
T 3opb_A 389 KMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN 468 (778)
T ss_dssp CCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG
T ss_pred CCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 677888999999987752 1 123344444432 1 1111110000 00 11233455699999999999
Q ss_pred CcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhcC---C------
Q psy10052 267 EKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKP-LKERFRALFTLKNIG---G------ 336 (500)
Q Consensus 267 ~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~-~~~r~~a~~~L~~~~---~------ 336 (500)
+++.+|..++++|..+............ .+.++.|..++.+.... ...|..|+.+|.++. +
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvq---------qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~ 539 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQ---------QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFK 539 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHH---------TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSS
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHH---------CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcC
Confidence 9999999999999988654332211111 13456777777765431 136788888887642 1
Q ss_pred ----hhhHHHHHHHhcC-CCH-------------HHHHHHHHHHhccCCC----------------ccHHHHHHHhhcCC
Q psy10052 337 ----KTAIQCISEAFAD-KSA-------------LLKHELAYCLGQMKDS----------------DANDILRQVLEDKS 382 (500)
Q Consensus 337 ----~~~~~~L~~~l~~-~~~-------------~vr~~a~~aL~~l~~~----------------~~~~~L~~~l~~~~ 382 (500)
..+++.|+.+|.. ++. .-+..|+.+|.++... .+++.|.+++.+.
T Consensus 540 ~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~- 618 (778)
T 3opb_A 540 KYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE- 618 (778)
T ss_dssp SSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-
T ss_pred CCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-
Confidence 2678999999982 221 1266788886665321 2577888888765
Q ss_pred CCHHHHHHHHHHHhhcCC-cc----------------HHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCC
Q psy10052 383 QEPMVRHEAAEALGAIGD-KS----------------SISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 445 (500)
Q Consensus 383 ~~~~vR~~a~~aL~~~~~-~~----------------~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 445 (500)
+..+|.+|+++++++.. ++ -++.|..+++..+..+|.+|+++|+++...........
T Consensus 619 -n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l----- 692 (778)
T 3opb_A 619 -NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL----- 692 (778)
T ss_dssp -SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH-----
T ss_pred -CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH-----
Confidence 79999999999988631 11 15678899999999999999999999954332211100
Q ss_pred CCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052 446 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 488 (500)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g 488 (500)
+.....++.|..++.+.+.+..+|.+++..+.++-
T Consensus 693 --------l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 693 --------LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp --------TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred --------HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 01247899999999874456679999999998883
No 62
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.19 E-value=4e-08 Score=101.05 Aligned_cols=365 Identities=14% Similarity=0.091 Sum_probs=236.3
Q ss_pred cchHHHHHHHcc-CCCHHHHHHHHHHHHccCC---------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------
Q psy10052 37 KTAIQCISEAFA-DESALLKHELAYCLGQMKD---------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------ 100 (500)
Q Consensus 37 ~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~---------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------ 100 (500)
+...+.+.+.+. .++..+....++.|..... ...++.|...++. ..+|..|+-.|.++..
T Consensus 254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~----~~ir~lAavvL~KL~~~~~~~~ 329 (778)
T 3opb_A 254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV----EDVQIYSALVLVKTWSFTKLTC 329 (778)
T ss_dssp TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS----GGGHHHHHHHHHHHTGGGTCTT
T ss_pred ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCCCCc
Confidence 345666666664 5566677777777766543 2346777777754 3588889888887652
Q ss_pred ---hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcC-CCcCHHH
Q psy10052 101 ---KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLN-ENEDLFM 176 (500)
Q Consensus 101 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d-~~~~~~~ 176 (500)
....+.+.+.+.+++...|..|+++|+.+.-+...... +..+ +..+..|++.+++ .+.+ +
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~-L~~d-------------~~~L~~Lv~llk~~~d~s--~ 393 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIM-IRSN-------------ESFTEILLTMIKSQKMTH--C 393 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHH-HHHC-------------HHHHHHHHHHHTTTCCTT--H
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHH-HHhC-------------HHHHHHHHHHHhCCCCch--H
Confidence 14567788888887776799999999998754322211 1111 3458889999974 3333 6
Q ss_pred HHHHHHHHHcCCCh--------hhHHHHHhhccCC--------CHhHHHHH-HH-HHhccCCCCcHHHHHHHhhccCCCH
Q psy10052 177 RYKAMFKLRDINSV--------ESTLALTEGLSHG--------SSLYRHEI-AF-VLGQMQNPSSIPALTSALEDQTQNE 238 (500)
Q Consensus 177 r~~A~~~L~~~~~~--------~~i~~l~~~L~~~--------~~~vr~~a-~~-aL~~~~~~~~i~~L~~~l~~~~~~~ 238 (500)
-+.++..+.+.-.. +-+..|.++.+.. ++.-...- .. .-..+.+.+++|.|+.++.. .++
T Consensus 394 ~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~ 471 (778)
T 3opb_A 394 LYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSP 471 (778)
T ss_dssp HHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCH
T ss_pred HHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCH
Confidence 77777777775321 1334444433211 11000101 11 11234566789999999987 468
Q ss_pred HHHHHHHHHHhhcCC----------chHHHHHHHhhcCCcHH---HHHHHHHHhhhccccchhHhHHHHhhhccCCCChH
Q psy10052 239 MVRHECAEALGAIAT----------PECYDVLRKYLSDEKVV---VRQSCEIALDMCDYENSVELQYADTLCKFKMIPEE 305 (500)
Q Consensus 239 ~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~---vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~ 305 (500)
.+|..++++|.++.. .++++.|..++.+.... +|..|+.+|.++.....+..-+ + +.....
T Consensus 472 ~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f----~--~~~~~~ 545 (778)
T 3opb_A 472 NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF----K--KYSALN 545 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHS----S--SSCSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHc----C--CCcccc
Confidence 899999999987653 35789999998877544 8999999999876443332111 1 011125
Q ss_pred HHHHHHHHhhc-CC-----------CCHHHHHHHHHHHHhcCC----------------hhhHHHHHHHhcCCCHHHHHH
Q psy10052 306 KILLIGQVLKD-SS-----------KPLKERFRALFTLKNIGG----------------KTAIQCISEAFADKSALLKHE 357 (500)
Q Consensus 306 ~~~~l~~~l~~-~~-----------~~~~~r~~a~~~L~~~~~----------------~~~~~~L~~~l~~~~~~vr~~ 357 (500)
.++.|.+++.. +. .+...++.|+.+|.++.. ..+++.|..++.+++..+|.+
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrA 625 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHH
Confidence 77888888872 22 111236667666554321 135778888888999999999
Q ss_pred HHHHHhccCCCc-----------------cHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--C----------ccHHHHHH
Q psy10052 358 LAYCLGQMKDSD-----------------ANDILRQVLEDKSQEPMVRHEAAEALGAIG--D----------KSSISILE 408 (500)
Q Consensus 358 a~~aL~~l~~~~-----------------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~----------~~~~~~L~ 408 (500)
|++++.++.... -++.|+.++... +..+|.+|+.+|+.+. . .+.++.+.
T Consensus 626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 999988764211 155788888665 8999999999999873 2 24677888
Q ss_pred HhhcC--CCHhHHHHHHHHHHHhhh
Q psy10052 409 KYAQD--PVKEVSETCYLALKRIQF 431 (500)
Q Consensus 409 ~~l~d--~~~~vr~~A~~aL~~l~~ 431 (500)
.++++ +++.+|..++..+..|..
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Confidence 88887 899999999999999975
No 63
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.13 E-value=4.3e-09 Score=100.66 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHccCC----------CccHHHHHHHhhcc---------CCCHHHHHHHHHHHHhcCC------------h
Q psy10052 53 LLKHELAYCLGQMKD----------SDANDILRQVLEDK---------SQEPMVRHEAAEALGAIGD------------K 101 (500)
Q Consensus 53 ~vR~~a~~~L~~~~~----------~~~~~~L~~~L~~~---------~~d~~vr~~a~~aL~~~~~------------~ 101 (500)
.....|+|+|+.+.. ...++.|+.+|..+ ..++.+++.|+++|..+.. .
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 334466677666532 34678888888521 0136789999999988742 1
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhchh-ccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHH
Q psy10052 102 SSISILEKYAQDPVKEVSETCYLALKRIQFV-TEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 180 (500)
Q Consensus 102 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A 180 (500)
+++|.|+++|.++++.++..|+++|.++... .......+.. .+.++.|+++|... .+..++..|
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--------------~G~Ip~Lv~lL~~~-~~~~~~~~A 191 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--------------VGSVKALMECALEV-KKESTLKSV 191 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--------------TTHHHHHHHHHHHC-CCHHHHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--------------CCCHHHHHHHHhcC-CCHHHHHHH
Confidence 3589999999999999999999999998753 1100000000 23577777765321 233455555
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCC--HHHHHHHHHHHhhcC------
Q psy10052 181 MFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQN--EMVRHECAEALGAIA------ 252 (500)
Q Consensus 181 ~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~--~~vr~~a~~aL~~~~------ 252 (500)
+.+|.++.. .++..+..++. ..+++|.|++++.+.+.. ..++..|+.+|..+.
T Consensus 192 ~~aL~nLs~-------------~~~~nk~~i~~------~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 192 LSALWNLSA-------------HCTENKADICA------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHHHHT-------------TCHHHHHHHHH------STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHc-------------cChhhhHHHHH------hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 555544322 01111211110 235677777777653221 146666666665443
Q ss_pred --------CchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHH
Q psy10052 253 --------TPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKER 324 (500)
Q Consensus 253 --------~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r 324 (500)
..++++.|..++.+.+..++..|+.+|..+....... +
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~----------------------------------~ 298 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD----------------------------------Q 298 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH----------------------------------H
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHH----------------------------------H
Confidence 2246899999999999999999999998765432211 1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccC
Q psy10052 325 FRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMK 366 (500)
Q Consensus 325 ~~a~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 366 (500)
.. +.. ..+++.|++++.+.+..+|..++++|.++.
T Consensus 299 ~~----i~~---~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 299 EA----LWD---MGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HH----HHH---TTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HH----HHH---CCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 00 111 236788888888888888888888887764
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.07 E-value=6.2e-09 Score=99.53 Aligned_cols=201 Identities=13% Similarity=0.107 Sum_probs=145.4
Q ss_pred CcHHHHHHHhhcc---------CCCHHHHHHHHHHHhhcCC------------chHHHHHHHhhcCCcHHHHHHHHHHhh
Q psy10052 222 SSIPALTSALEDQ---------TQNEMVRHECAEALGAIAT------------PECYDVLRKYLSDEKVVVRQSCEIALD 280 (500)
Q Consensus 222 ~~i~~L~~~l~~~---------~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~al~ 280 (500)
+.++.|+.+|..+ ..++.++..|+++|.++.. .+++|.|..++.++++.++..++.+|.
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5688888888421 1236789999999987642 134899999999999999999999999
Q ss_pred hccccc-hhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC------------ChhhHHHHHHHh
Q psy10052 281 MCDYEN-SVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG------------GKTAIQCISEAF 347 (500)
Q Consensus 281 ~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~------------~~~~~~~L~~~l 347 (500)
.+.+.. ......... ...++.|.+++.... +..++..|+.+|..+. ...+++.|+.+|
T Consensus 153 nLs~~~~~~~k~~i~~--------~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL 223 (354)
T 3nmw_A 153 NLSWRADVNSKKTLRE--------VGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 223 (354)
T ss_dssp HHHTTCCHHHHHHHHH--------TTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHH--------CCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHh
Confidence 887642 211111111 234678888654322 1345665555554332 235678899999
Q ss_pred cCCCH----HHHHHHHHHHhccCC--------------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--c------
Q psy10052 348 ADKSA----LLKHELAYCLGQMKD--------------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD--K------ 401 (500)
Q Consensus 348 ~~~~~----~vr~~a~~aL~~l~~--------------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--~------ 401 (500)
.+.+. .++..++++|.++.. ..+++.|+.++.+. +..++..|+.+|.++.. +
T Consensus 224 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i 301 (354)
T 3nmw_A 224 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEAL 301 (354)
T ss_dssp TCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred ccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC--ChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 86644 488888888877652 24789999999876 78999999999999862 2
Q ss_pred ---cHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 402 ---SSISILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 402 ---~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
..++.|..++.++++.++..|+++|..+....
T Consensus 302 ~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 302 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999998653
No 65
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.92 E-value=2.8e-08 Score=93.91 Aligned_cols=258 Identities=17% Similarity=0.189 Sum_probs=148.3
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHccCC--Cc---cHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhh----HHHHHH
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQMKD--SD---ANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS----ISILEK 109 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--~~---~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~----~~~L~~ 109 (500)
....+++++.++|...|+-.-..+..+.. ++ ++..|.+=++++ ++.+|..|+++|+.+..++. .+.+.+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~--N~~iR~lALRtL~~I~~~~m~~~l~~~lk~ 146 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGK--EDSYRGPAVRALCQITDSTMLQAIERYMKQ 146 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSS--CHHHHHHHHHHHHHHCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC--cHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34456778899999998865555554432 22 467778888888 79999999999999998754 455667
Q ss_pred HhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC
Q psy10052 110 YAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS 189 (500)
Q Consensus 110 ~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~ 189 (500)
++.|.+|.||..|+.+..++-....... +..++.+.+.+.| .++.+...|+..|..+..
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~~pe~v-------------------~~~~~~l~~ll~d--~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKCSFDVV-------------------KRWVNEAQEAASS--DNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTTCHHHH-------------------HTTHHHHHHHTTC--SSHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHhccCHHHH-------------------HHHHHHHHHHhcC--CCccHHHHHHHHHHHHHh
Confidence 7899999999999999998764321111 2347777788855 466788888888877653
Q ss_pred --hhhHHHHHhhccCC---CHhHHHHHHHHHhccCCC-------CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCc---
Q psy10052 190 --VESTLALTEGLSHG---SSLYRHEIAFVLGQMQNP-------SSIPALTSALEDQTQNEMVRHECAEALGAIATP--- 254 (500)
Q Consensus 190 --~~~i~~l~~~L~~~---~~~vr~~a~~aL~~~~~~-------~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~--- 254 (500)
..++..++..+... ++......++.+..+... ..++.+...|++ .++.|..+|+.++..+...
T Consensus 206 ~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~--~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 206 NDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRN--KHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp TCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCC--SSHHHHHHHHHHHTC-------
T ss_pred hchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcC--CChHHHHHHHHHHHhccCCCHH
Confidence 34667777766542 577777778877666522 345556666665 5689999999999877641
Q ss_pred ---hHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10052 255 ---ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTL 331 (500)
Q Consensus 255 ---~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L 331 (500)
.+...|..++.++++.+|..++..+..+....+.... ..-..+..++.|++.+ .+..|+.+|
T Consensus 284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~-------------~~n~~ie~li~d~n~s--I~t~Aittl 348 (355)
T 3tjz_B 284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT-------------ACNLDLENLVTDANRS--IATLAITTL 348 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH-------------HHHHHHHHHccCCcHh--HHHHHHHHh
Confidence 1345667788888899999988888766543332110 0112455667777654 455666666
Q ss_pred HhcCC
Q psy10052 332 KNIGG 336 (500)
Q Consensus 332 ~~~~~ 336 (500)
-+.|.
T Consensus 349 lktg~ 353 (355)
T 3tjz_B 349 LKTGS 353 (355)
T ss_dssp -----
T ss_pred hhccC
Confidence 55553
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.92 E-value=5.5e-08 Score=91.92 Aligned_cols=241 Identities=12% Similarity=0.085 Sum_probs=147.6
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCc-----chHHHHHHHccCCCHHHHHHHHHHHHccCCCccH----HHHHHHhhcc
Q psy10052 11 GQVLKDSSKPLKERFRALFTLKNIGGK-----TAIQCISEAFADESALLKHELAYCLGQMKDSDAN----DILRQVLEDK 81 (500)
Q Consensus 11 ~~~L~~~~~~~~~R~~A~~~L~~~~~~-----~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~----~~L~~~L~~~ 81 (500)
.+.+.++|.. .|...-..+..+... -++..|.+-+.|+++.+|..|++.|+.+..++.+ +.+.++|.|.
T Consensus 74 ~kl~~s~d~~--lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~ 151 (355)
T 3tjz_B 74 TKLFQSNDPT--LRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDK 151 (355)
T ss_dssp HGGGGCCCHH--HHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCS
T ss_pred HHHhcCCCHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 4578888875 777776666665432 2577788888999999999999999999887654 5556677788
Q ss_pred CCCHHHHHHHHHHHHhcCC--h----hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCC
Q psy10052 82 SQEPMVRHEAAEALGAIGD--K----SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLD 155 (500)
Q Consensus 82 ~~d~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (500)
+|.||..|+-+..++-. + ..++.+..++.|.++.|..+|+.+|..+....
T Consensus 152 --~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---------------------- 207 (355)
T 3tjz_B 152 --VPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---------------------- 207 (355)
T ss_dssp --SHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC----------------------
T ss_pred --CHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc----------------------
Confidence 89999999999887643 2 35667778899999999999999999887422
Q ss_pred CcccHHHHHHHhcCC-CcCHHHHHHHHHHHHcCCC-------hhhHHHHHhhccCCCHhHHHHHHHHHhccCC------C
Q psy10052 156 DVSDINKLKEILLNE-NEDLFMRYKAMFKLRDINS-------VESTLALTEGLSHGSSLYRHEIAFVLGQMQN------P 221 (500)
Q Consensus 156 ~~~~~~~L~~~l~d~-~~~~~~r~~A~~~L~~~~~-------~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~------~ 221 (500)
..++..++..+... -.+++....-+..+..... .+.++.+...|++.++.|..++++++-.+.. .
T Consensus 208 -~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~ 286 (355)
T 3tjz_B 208 -RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELA 286 (355)
T ss_dssp -HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred -hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHH
Confidence 22467777777542 3357777777776666442 2356777788889999999999999977764 1
Q ss_pred CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC--ch----HHHHHHHhhcCCcHHHHHHHHHHhh
Q psy10052 222 SSIPALTSALEDQTQNEMVRHECAEALGAIAT--PE----CYDVLRKYLSDEKVVVRQSCEIALD 280 (500)
Q Consensus 222 ~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~al~ 280 (500)
.++..|..++.+. ++.+|..|++.|..+.. +. .-..+..+++|++..++.-|+..|-
T Consensus 287 ~a~~~L~~fLss~--d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 287 PAVSVLQLFCSSP--KAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp -CCCTHHHHHHSS--SSSSHHHHHHCC--------------------------------------
T ss_pred HHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 2355566667653 46799999988876653 22 3456677899999888877766654
No 67
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.89 E-value=2.1e-08 Score=93.24 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=106.6
Q ss_pred hhHHHHHH-HhcCCCHHHHHHHHHHHhccCCC-----------ccHHHHHHHhhcCCCCHHHHHHHHHHHhhcC--C---
Q psy10052 338 TAIQCISE-AFADKSALLKHELAYCLGQMKDS-----------DANDILRQVLEDKSQEPMVRHEAAEALGAIG--D--- 400 (500)
Q Consensus 338 ~~~~~L~~-~l~~~~~~vr~~a~~aL~~l~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~--~--- 400 (500)
..++.|+. +|.++++.+|..|+++||.+... .+++.|+.++.+.. +..+|..|+++|+++. .
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHH
Confidence 36788999 99999999999999999998532 47899999998532 6899999999999873 2
Q ss_pred ------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccH
Q psy10052 401 ------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL 474 (500)
Q Consensus 401 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 474 (500)
...++.|..++.++++.++..|+++|+.+........... .....++.|.++|..+ +.
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v--------------v~~g~i~~Lv~LL~~~--d~ 223 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL--------------CSMGMVQQLVALVRTE--HS 223 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH--------------HHTTHHHHHHHHHTSC--CS
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH--------------HHcCCHHHHHHHHcCC--Ch
Confidence 2467899999999999999999999999976532211110 1247899999999655 44
Q ss_pred HHHHHHHHHhHhc
Q psy10052 475 FMRYKAMFKLRDI 487 (500)
Q Consensus 475 ~~r~~a~~al~~~ 487 (500)
.+|..|+.+|+++
T Consensus 224 ~v~~~al~aL~~l 236 (296)
T 1xqr_A 224 PFHEHVLGALCSL 236 (296)
T ss_dssp THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6999999999999
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.85 E-value=3.5e-08 Score=91.73 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=99.0
Q ss_pred HHHHHHhhcCCCC----------CHHHHHHHHHHHHhcCC----------cchHHHHHH-HccCCCHHHHHHHHHHHHcc
Q psy10052 7 ILLIGQVLKDSSK----------PLKERFRALFTLKNIGG----------KTAIQCISE-AFADESALLKHELAYCLGQM 65 (500)
Q Consensus 7 ~~~L~~~L~~~~~----------~~~~R~~A~~~L~~~~~----------~~~~~~L~~-~l~~~~~~vR~~a~~~L~~~ 65 (500)
+...++.|.++++ ....|..|+..|..+.. ...++.|+. +|.++++.+|..|+|+|+.+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~i 109 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC 109 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4556677777632 12378888888887653 146888999 99999999999999999987
Q ss_pred C--C---------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC--C---------hhhHHHHHHHhcCCCHHHHHHHH
Q psy10052 66 K--D---------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG--D---------KSSISILEKYAQDPVKEVSETCY 123 (500)
Q Consensus 66 ~--~---------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~ 123 (500)
. + ..+++.|+.+|+++. ++.+|+.|+++|+.+. . .+.++.|+.+++++++.++..|+
T Consensus 110 a~~n~~~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 110 SQNVAAIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 3 2 357899999998642 6899999999999874 2 24678899999999999999999
Q ss_pred HHHHHhch
Q psy10052 124 LALKRIQF 131 (500)
Q Consensus 124 ~aL~~~~~ 131 (500)
++|+++..
T Consensus 189 ~aLs~L~~ 196 (296)
T 1xqr_A 189 FLLQNLLV 196 (296)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999864
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.75 E-value=1.1e-07 Score=86.19 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=102.0
Q ss_pred HHHHHccCCCHHHHHHHHHHHHcc--C--C------CccHHHHHHHhh-ccCCCHHHHHHHHHHHHhcCC----------
Q psy10052 42 CISEAFADESALLKHELAYCLGQM--K--D------SDANDILRQVLE-DKSQEPMVRHEAAEALGAIGD---------- 100 (500)
Q Consensus 42 ~L~~~l~~~~~~vR~~a~~~L~~~--~--~------~~~~~~L~~~L~-~~~~d~~vr~~a~~aL~~~~~---------- 100 (500)
.+.+.+.|.+|..|..++..|..+ + . .+.++.|...+. |. +..||..|+.+++.+..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 466677788888888888777654 1 1 134667777784 76 78889899888887642
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHH
Q psy10052 101 KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 180 (500)
Q Consensus 101 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A 180 (500)
...+|.|...+.|+++.||.+|..+|..+...... ...++.+...+.+ .++.+|..+
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---------------------~~ll~~l~~~l~~--~~~~vr~~~ 153 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---------------------EAQQESIVESLSN--KNPSVKSET 153 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---------------------HHHHHHHHHHTTC--SCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHcC--CChHHHHHH
Confidence 24678888889999999999999999887642111 2235566666643 345566666
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcC
Q psy10052 181 MFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIA 252 (500)
Q Consensus 181 ~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 252 (500)
+..++..-.. . .+...... . -+..+|.|..++.| .++.||..|..+++.+.
T Consensus 154 l~~l~~~l~~---------~-~~~~~~~~-~--------l~~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 154 ALFIARALTR---------T-QPTALNKK-L--------LKLLTTSLVKTLNE--PDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHHTT---------C-CGGGCCHH-H--------HHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------c-CCCCccHH-H--------HHHHHHHHHHHhcC--CChHHHHHHHHHHHHHH
Confidence 5555442100 0 00000000 0 01245666667765 45777777777776654
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=3.9e-07 Score=82.59 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=105.0
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhc-CCCHHHHHHHHHHHHHhchhccchhhcc
Q psy10052 72 DILRQVLEDKSQEPMVRHEAAEALGAIGD----------KSSISILEKYAQ-DPVKEVSETCYLALKRIQFVTEEDKQKD 140 (500)
Q Consensus 72 ~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~~~~ 140 (500)
+.+.+.+++. +|..|..|+..|..+-. .+.++.|.+++. |++..||..|+.+++.+.......
T Consensus 18 ~~l~~~l~s~--~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~---- 91 (242)
T 2qk2_A 18 KDFYDKLEEK--KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR---- 91 (242)
T ss_dssp TTHHHHHTCS--SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHhhhccC--CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh----
Confidence 3477788887 89999999999976521 245778888894 999999999999999876321100
Q ss_pred ccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCC
Q psy10052 141 TGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQN 220 (500)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~ 220 (500)
+ ..+ ....++.+...++|+++.||..+..++..+..
T Consensus 92 --------------------------~--------~~~----------~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 92 --------------------------F--------SNY----------ASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp --------------------------G--------HHH----------HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred --------------------------H--------HHH----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0 000 01344455555555555555555555543322
Q ss_pred C----CcHHHHHHHhhccCCCHHHHHHHHHHHhhc-CC-----------chHHHHHHHhhcCCcHHHHHHHHHHhhhccc
Q psy10052 221 P----SSIPALTSALEDQTQNEMVRHECAEALGAI-AT-----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDY 284 (500)
Q Consensus 221 ~----~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~-~~-----------~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~ 284 (500)
. ..++.+...+.+ .++.+|..++..|+.+ .. +..++.|..++.|+++.||..+..+++.+..
T Consensus 128 ~~~~~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 128 STSLEAQQESIVESLSN--KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TSCHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 234555555554 3566777776666653 11 1357888899999999999999999987653
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.59 E-value=1.1e-05 Score=66.46 Aligned_cols=195 Identities=17% Similarity=0.137 Sum_probs=133.1
Q ss_pred ChhhHHHHHhhccCCCHhHHHHHHHHHhccCC--CCcHHH----HHHHhhccCCCHHHHHHHHHHHhhcCC--c----hH
Q psy10052 189 SVESTLALTEGLSHGSSLYRHEIAFVLGQMQN--PSSIPA----LTSALEDQTQNEMVRHECAEALGAIAT--P----EC 256 (500)
Q Consensus 189 ~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~--~~~i~~----L~~~l~~~~~~~~vr~~a~~aL~~~~~--~----~~ 256 (500)
+.+.++.++..|.|.-|.|+..++..+..+.. ++.+.+ |..++..+ +....-...+.++|.+.. | ..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ks-EaIpltqeIa~a~G~la~i~Pe~v~~v 108 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS-EAIPLTQEIAKAFGQMAKEKPELVKSM 108 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-ccCchHHHHHHHHhHHHHhCHHHHHhh
Confidence 45788999999999999999999998876642 333333 33344433 455566777788876652 2 24
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC
Q psy10052 257 YDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGG 336 (500)
Q Consensus 257 ~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~ 336 (500)
+|.+..-+.-.++.+|.....+|+.|...++.. +
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l--------------------~-------------------------- 142 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPML--------------------M-------------------------- 142 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--------------------H--------------------------
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHH--------------------H--------------------------
Confidence 566666666668888888777777554322210 0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCc------cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--ccHHHHHH
Q psy10052 337 KTAIQCISEAFADKSALLKHELAYCLGQMKDSD------ANDILRQVLEDKSQEPMVRHEAAEALGAIGD--KSSISILE 408 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~------~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--~~~~~~L~ 408 (500)
...+.-+..++.+++..-|..+..-++.+|... .+|.|..++.|. +..||..|+++|+++.. +...+.+.
T Consensus 143 ~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~--deiVRaSaVEtL~~lA~~npklRkii~ 220 (253)
T 2db0_A 143 ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDG--DEIVRASAVEALVHLATLNDKLRKVVI 220 (253)
T ss_dssp HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCS--SHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCc--chhhhHHHHHHHHHHHHcCHHHHHHHH
Confidence 112344556667777777888888888777653 578888888887 78889999998888753 44444443
Q ss_pred H---hhcCCCHhHHHHHHHHHHHhhhh
Q psy10052 409 K---YAQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 409 ~---~l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
. -++|++..|......+|+++.-.
T Consensus 221 ~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 221 KRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3 34789999999999999998653
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.45 E-value=1.2e-05 Score=66.17 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=124.0
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCC--Ccc----HHHHHHHhhccCCCHHHHHHHHHHHHhcC--Chh----h
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKD--SDA----NDILRQVLEDKSQEPMVRHEAAEALGAIG--DKS----S 103 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~--~~~----~~~L~~~L~~~~~d~~vr~~a~~aL~~~~--~~~----~ 103 (500)
+.+.++.++.+|.|+-|.|+..|+..+..+.. ++. +..|+-+++.+. .-..-...++++|.+. .|+ .
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE-aIpltqeIa~a~G~la~i~Pe~v~~v 108 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMAKEKPELVKSM 108 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHhHHHHhCHHHHHhh
Confidence 35678888888888888888888888877632 333 333444444432 3444456677777654 233 3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHH
Q psy10052 104 ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFK 183 (500)
Q Consensus 104 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~ 183 (500)
+|.|..-+.=.++..|.....+|..+........ ...+..+...+.+ +|...|..|+.-
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~-------------------~~v~rdi~smlts--kd~~Dkl~aLnF 167 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-------------------ASIVRDFMSMLSS--KNREDKLTALNF 167 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-------------------HHHHHHHHHHTSC--SSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-------------------HHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 4555555555678888888888887754332211 2346777777753 455678888888
Q ss_pred HHcCCCh------hhHHHHHhhccCCCHhHHHHHHHHHhccC--CCCcHHHHHHHh---hccCCCHHHHHHHHHHHhhc
Q psy10052 184 LRDINSV------ESTLALTEGLSHGSSLYRHEIAFVLGQMQ--NPSSIPALTSAL---EDQTQNEMVRHECAEALGAI 251 (500)
Q Consensus 184 L~~~~~~------~~i~~l~~~L~~~~~~vr~~a~~aL~~~~--~~~~i~~L~~~l---~~~~~~~~vr~~a~~aL~~~ 251 (500)
++.+|.. +.++.|..+|.|.+.-||..++++|+.+. ++..-+.+...+ .| .+..|.....++|+.+
T Consensus 168 i~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D--~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 168 IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELND--TSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCC--SCHHHHHHHHHHHHHH
T ss_pred HHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHH
Confidence 8877753 67888888888888888888888888775 333333333333 34 3456777777777654
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1e-05 Score=73.34 Aligned_cols=125 Identities=15% Similarity=0.091 Sum_probs=78.5
Q ss_pred HHHHccCCCHHHHHHHHHHHHc-c--CC----------CccHHHHHHHh-hccCCCHHHHHHHHHHHHhcCC--------
Q psy10052 43 ISEAFADESALLKHELAYCLGQ-M--KD----------SDANDILRQVL-EDKSQEPMVRHEAAEALGAIGD-------- 100 (500)
Q Consensus 43 L~~~l~~~~~~vR~~a~~~L~~-~--~~----------~~~~~~L~~~L-~~~~~d~~vr~~a~~aL~~~~~-------- 100 (500)
+.+.+.+++|..|..|+..|+. + +. .+.+..|.+.+ +|. +..||..|+.+++.+..
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhccccccc
Confidence 3445567777777777776666 4 21 12345566666 565 67778888777776421
Q ss_pred ----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCC-CcccHHHHHHHhcCCCcCHH
Q psy10052 101 ----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLD-DVSDINKLKEILLNENEDLF 175 (500)
Q Consensus 101 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~d~~~~~~ 175 (500)
...+|.++..+.|..+.|+.++..+|..+.... +|..... .+..++.|...+.+ .++.
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~---------------~~~~~~~~l~~ll~~l~~~l~~--k~~~ 161 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY---------------DPLASSGRNEDMLKDILEHMKH--KTPQ 161 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS---------------CTTCTTCTTHHHHHHHHHHTTC--SSHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc---------------cccccCCcHHHHHHHHHHHHcC--CChH
Confidence 125677888889999999999999888776422 1100000 03457777778844 3567
Q ss_pred HHHHHHHHHHc
Q psy10052 176 MRYKAMFKLRD 186 (500)
Q Consensus 176 ~r~~A~~~L~~ 186 (500)
+|..++..+..
T Consensus 162 vk~~al~~l~~ 172 (249)
T 2qk1_A 162 IRMECTQLFNA 172 (249)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877766654
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.3e-05 Score=70.98 Aligned_cols=170 Identities=10% Similarity=0.055 Sum_probs=108.3
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHh-cC---------C---hhhHHHHHHHh-cCCCHHHHHHHHHHHHHhchhccchhh
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGA-IG---------D---KSSISILEKYA-QDPVKEVSETCYLALKRIQFVTEEDKQ 138 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~-~~---------~---~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~ 138 (500)
.+.+.+.+. +|.-|..|+..|+. +. . ...+..|.+.+ +|.+..||..|+.+++.+......+
T Consensus 20 ~f~~~l~s~--~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~-- 95 (249)
T 2qk1_A 20 DFQERITSS--KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP-- 95 (249)
T ss_dssp THHHHHTCS--SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred hHHHHhhcC--CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc--
Confidence 355667777 89999999999998 62 1 13566778888 8999999999999999987432100
Q ss_pred ccccCcCC-CCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHH---HHHc-C------C-ChhhHHHHHhhccCCCHh
Q psy10052 139 KDTGNIYG-SVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMF---KLRD-I------N-SVESTLALTEGLSHGSSL 206 (500)
Q Consensus 139 ~~~~~~~~-~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~---~L~~-~------~-~~~~i~~l~~~L~~~~~~ 206 (500)
.|. .. . ...++.+++.+.|. ...++..+.. ++.. . + -+..++.+...|+++++.
T Consensus 96 -----~f~~~y-----~--~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~ 161 (249)
T 2qk1_A 96 -----GFSKDY-----V--SLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQ 161 (249)
T ss_dssp -----TSCHHH-----H--HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHH
T ss_pred -----cccHHH-----H--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChH
Confidence 000 00 0 23467777777554 3446555433 3333 2 2 235677888888888888
Q ss_pred HHHHHHHHHhccC--------------CCCcHHHHHHHhhccCCCHHHHHHHHHHHhh----cCCchHHHHHHH
Q psy10052 207 YRHEIAFVLGQMQ--------------NPSSIPALTSALEDQTQNEMVRHECAEALGA----IATPECYDVLRK 262 (500)
Q Consensus 207 vr~~a~~aL~~~~--------------~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~----~~~~~~~~~L~~ 262 (500)
+|..++..|+.+- .+..+|.|.+++.| .++.||..|..+++. +|.....+.+..
T Consensus 162 vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D--~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 162 IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND--TQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 8888887765432 24566666677765 356777777777765 444444444444
No 75
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.26 E-value=1.4e-05 Score=70.96 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=87.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCc------
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQMKD-----------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------ 401 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~------ 401 (500)
++|.|+++|.++++.++..|+++|.++.. ..+++.|++++.+.. ++.++..|+.+|.++...
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~ 131 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNL 131 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHH
Confidence 56777777777777777777777777643 136888888887421 688888888777666431
Q ss_pred ---cHHHHHHHhhc----------------CCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHH
Q psy10052 402 ---SSISILEKYAQ----------------DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINK 462 (500)
Q Consensus 402 ---~~~~~L~~~l~----------------d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (500)
+.++.|..++. ..+..|+..|..+|..+........+... .....++.
T Consensus 132 i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r-------------~~~Gli~~ 198 (233)
T 3tt9_A 132 MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMR-------------RCDGLIDS 198 (233)
T ss_dssp HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHH-------------TSTTHHHH
T ss_pred HHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH-------------HCCCcHHH
Confidence 24555554331 13679999999999999763322111100 01256788
Q ss_pred HHHHHhc----CCccHHHHHHHHHHhHhc
Q psy10052 463 LKEILLN----ENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 463 l~~~l~~----~~~~~~~r~~a~~al~~~ 487 (500)
|+..+.. +..+...+..|+-+|.++
T Consensus 199 Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 199 LVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 8777754 334556788888888876
No 76
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.24 E-value=8e-06 Score=72.57 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=95.2
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--C---------cchHHHHHHHccCCCHHHHHHHHHHHHccCC-----
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIG--G---------KTAIQCISEAFADESALLKHELAYCLGQMKD----- 67 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~----- 67 (500)
+.+++.|+++|.+++....++..|...|..+. . ...++.|+++|+++++.++..|+|+|..+..
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 45789999999999873237777777776643 1 2478999999999999999999999998732
Q ss_pred ------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh---------hhHHHHHHHhc----------------CCCH
Q psy10052 68 ------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQ----------------DPVK 116 (500)
Q Consensus 68 ------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~---------~~~~~L~~~l~----------------d~~~ 116 (500)
..+++.|+++|.+.. ++.++..|+.+|..+... ..++.|..++. ..++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 357899999998532 788999998777665321 24566655431 1367
Q ss_pred HHHHHHHHHHHHhch
Q psy10052 117 EVSETCYLALKRIQF 131 (500)
Q Consensus 117 ~vr~~a~~aL~~~~~ 131 (500)
.|+..|..+|.++..
T Consensus 166 ~v~~na~~~L~nLss 180 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999865
No 77
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.24 E-value=0.0044 Score=67.76 Aligned_cols=447 Identities=11% Similarity=0.007 Sum_probs=234.2
Q ss_pred HHHHHHh-hcCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHcc-CCCHHHHHHHHHHHHcc-----C--CC----ccHH
Q psy10052 7 ILLIGQV-LKDSSKPLKERFRALFTLKNIG-GKTAIQCISEAFA-DESALLKHELAYCLGQM-----K--DS----DAND 72 (500)
Q Consensus 7 ~~~L~~~-L~~~~~~~~~R~~A~~~L~~~~-~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~-----~--~~----~~~~ 72 (500)
+.+++.. ..++++. .|..|-..|.+.. .+.....+..+|. +.++.+|..|+..|... . ++ ....
T Consensus 26 l~~~l~~l~~~~~~~--~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 26 VEKALHQLYYDPNIE--NKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHHHHHHHHHCCCHH--HHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 4444444 3456654 8999999998864 3456777777775 67899999999998753 1 11 1235
Q ss_pred HHHHHhhccC-CCHHHHHHHHHHHHhc-------CChhhHHHHHHHhcC-----CCHHHHHHHHHHHHHhchhccchhhc
Q psy10052 73 ILRQVLEDKS-QEPMVRHEAAEALGAI-------GDKSSISILEKYAQD-----PVKEVSETCYLALKRIQFVTEEDKQK 139 (500)
Q Consensus 73 ~L~~~L~~~~-~d~~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~~~~~~~~~~~ 139 (500)
.|++.+.+.. ..+.||...+.+++.+ .+++.++.|..++++ +++..+..+...|..+....... +
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~--~ 181 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS--R 181 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc--c
Confidence 5666665521 1478999999988875 356889999998876 36667788888888776421100 0
Q ss_pred cccCcCCCCCCCCCCCC--cccHHHHHHHhcCCCcCHHHHHHHHHHHHcC---CC-----hhhHHHHHhhccCCCHhHHH
Q psy10052 140 DTGNIYGSVDPTPPLDD--VSDINKLKEILLNENEDLFMRYKAMFKLRDI---NS-----VESTLALTEGLSHGSSLYRH 209 (500)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~---~~-----~~~i~~l~~~L~~~~~~vr~ 209 (500)
. ... ........+.. +..++.+...+.+.+.+..++..++.++..+ +. ...++.+...+. ++.+|.
T Consensus 182 ~-~~~-~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~ 257 (963)
T 2x19_B 182 L-PQY-RKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFD 257 (963)
T ss_dssp C-----------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHH
T ss_pred C-cHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHH
Confidence 0 000 00000000100 2223444455554443434666677766431 21 345666666664 567888
Q ss_pred HHHHHHhccCCC----CcHHHH-------HH-------HhhccCCCHHHHHHHHHHHhhcCCc----------------h
Q psy10052 210 EIAFVLGQMQNP----SSIPAL-------TS-------ALEDQTQNEMVRHECAEALGAIATP----------------E 255 (500)
Q Consensus 210 ~a~~aL~~~~~~----~~i~~L-------~~-------~l~~~~~~~~vr~~a~~aL~~~~~~----------------~ 255 (500)
.++.++..+-.. ...+.+ .. .+.+ .+.+.....++.+..++.. .
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 335 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQN--GDMETSHGICRIAVALGENHSRALLDQVEHWQSFLA 335 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHH
Confidence 888887665321 111111 11 1122 2334444445544443311 1
Q ss_pred HHHHHHHhhcC-----CcHHHHHHHHHHhhhcccc-----c---hhHh-HHHHhhhccCCCChHHHHHHHHHhhcCC---
Q psy10052 256 CYDVLRKYLSD-----EKVVVRQSCEIALDMCDYE-----N---SVEL-QYADTLCKFKMIPEEKILLIGQVLKDSS--- 318 (500)
Q Consensus 256 ~~~~L~~~l~~-----~~~~vr~~a~~al~~l~~~-----~---~~~~-~~~~~l~~~~~~~~~~~~~l~~~l~~~~--- 318 (500)
.++.+.....+ .+..+...+..-...+... . .... .+...+. .-++.+...+..++
T Consensus 336 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~-------~l~~~ll~~~~~p~~~~ 408 (963)
T 2x19_B 336 LVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYF-------QLVDVLLHKAQFPSDEE 408 (963)
T ss_dssp HHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHcCCCccc
Confidence 12222333332 1222222222111111000 0 0000 0000000 00111111111100
Q ss_pred ---------CCH-HHHHHHHHHHH---hcCChhhHH----HHHHHh----cCCCHHHHHHHHHHHhccCCC------ccH
Q psy10052 319 ---------KPL-KERFRALFTLK---NIGGKTAIQ----CISEAF----ADKSALLKHELAYCLGQMKDS------DAN 371 (500)
Q Consensus 319 ---------~~~-~~r~~a~~~L~---~~~~~~~~~----~L~~~l----~~~~~~vr~~a~~aL~~l~~~------~~~ 371 (500)
..+ .-|..+...|. .......++ .+...+ .+.++..+.+++.++|.+... ..+
T Consensus 409 ~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l 488 (963)
T 2x19_B 409 YGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVV 488 (963)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 001 12444443333 222233333 444455 567899999999999988642 345
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHhhcCC---------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhccccccc
Q psy10052 372 DILRQVLED-KSQEPMVRHEAAEALGAIGD---------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDT 441 (500)
Q Consensus 372 ~~L~~~l~~-~~~~~~vR~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 441 (500)
+.++..+.. .+.++.+|..++.++|++.. +.+++.|...+.+ +.|+..|+.++.++-.......
T Consensus 489 ~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l---- 562 (963)
T 2x19_B 489 PGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDL---- 562 (963)
T ss_dssp HHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGC----
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHH----
Confidence 566655432 11378999999999998742 2345666666655 7899999999999875322110
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052 442 GNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 487 (500)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~ 487 (500)
.| .-+..+..|.+++...+-+...|.....+++.+
T Consensus 563 -------~p----~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 563 -------PP----YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp -------TT----THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -------Hh----hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 11 124677777777764344557888888888876
No 78
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.23 E-value=0.00054 Score=74.93 Aligned_cols=125 Identities=10% Similarity=-0.041 Sum_probs=90.1
Q ss_pred CCChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHccC--CCHHHHHHHHHHHHcc-----C------
Q psy10052 1 MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG-GKTAIQCISEAFAD--ESALLKHELAYCLGQM-----K------ 66 (500)
Q Consensus 1 ~~~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~-~~~~~~~L~~~l~~--~~~~vR~~a~~~L~~~-----~------ 66 (500)
|..-..+.+++....+||.. .| |-..|.+.. .+.....|...+.+ .+..+|..|+-.|.+. .
T Consensus 1 M~d~~~l~~~L~~~~spd~~--~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIASTA--KT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp CCHHHHHHHHHHHTTSGGGH--HH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred CCcHHHHHHHHHHhcCCCHH--HH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 43334555555555677764 67 888887763 34567778888753 4689999999888753 1
Q ss_pred --CC----ccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 67 --DS----DANDILRQVLEDKSQEPMVRHEAAEALGAIG-------DKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 67 --~~----~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
++ .....|+..+.++ +..+|..++.+++.+. +++.++.|..+++++++..+..+..+|..+..
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 01 1245667777776 5889999999888753 57899999999988888888999999988764
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.22 E-value=0.00019 Score=61.91 Aligned_cols=189 Identities=10% Similarity=0.090 Sum_probs=105.9
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCC
Q psy10052 224 IPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIP 303 (500)
Q Consensus 224 i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~ 303 (500)
+..+.+.+.. +.++...-.+. .....+..|.+++.+.|+.++..+..+++.+-.......... .-
T Consensus 9 ~~~lre~L~s----WkiK~a~ela~---~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~--------~~ 73 (265)
T 3b2a_A 9 KTELRELVLS----WQILDAVSLAL---EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMM--------VL 73 (265)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHH---HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHH--------HH
T ss_pred HHHHHHHHHH----hhHHHHHHHHH---hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHH--------HH
Confidence 4455555553 33554332333 345578889999999999999999988885543311100000 00
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC-----h----hhHHHHHHHhcCCCHHHHHHHHHHHhccCCCc----c
Q psy10052 304 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-----K----TAIQCISEAFADKSALLKHELAYCLGQMKDSD----A 370 (500)
Q Consensus 304 ~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~-----~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~----~ 370 (500)
+..++.+.+++.+.+. .+-..|+++|+.+-. + .....+...+.+++.-++..++..+|.+.... .
T Consensus 74 e~~Ld~iI~llk~~dE--kval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V 151 (265)
T 3b2a_A 74 ERHLDVFINALSQENE--KVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV 151 (265)
T ss_dssp HHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHH
T ss_pred HHHHHHHHHHHhccch--hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHH
Confidence 1223445555544442 344555555553311 1 23345555566666667777777777664322 4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 371 NDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 371 ~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
+..|..++..+ +..++.+++.+|-+++. ...+.-+..+++.+|+.++..|..++..+-.
T Consensus 152 ~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 152 RTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 55555666443 67777777777666543 2345556666666677777777777666643
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.20 E-value=4.7e-05 Score=65.64 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=120.2
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCC-----------CccHHHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKD-----------SDANDIL 74 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L 74 (500)
+.+++.+.|.+ |.+|- |...... .+..+..|.++|.+.|+.++..++.+|..+=. .+..+.+
T Consensus 8 ~~~~lre~L~s----WkiK~-a~ela~~--~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~i 80 (265)
T 3b2a_A 8 SKTELRELVLS----WQILD-AVSLALE--DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVF 80 (265)
T ss_dssp CHHHHHHHHHT----TCHHH-HHHHHHH--CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH----hhHHH-HHHHHHh--chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 45667777764 22443 2222222 34588899999999999999999999887611 3456778
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhcCC-----h----hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcC
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAIGD-----K----SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 145 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~ 145 (500)
+.++.++ |..|-..|+++|+.+-. + .....|...++++++-++..|+..++.+.-....
T Consensus 81 I~llk~~--dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~---------- 148 (265)
T 3b2a_A 81 INALSQE--NEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS---------- 148 (265)
T ss_dssp HHTCCST--THHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC----------
T ss_pred HHHHhcc--chhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch----------
Confidence 8888777 78888888888887632 1 2455666777888888999999999887421110
Q ss_pred CCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCCh--------hhHHHHHhhccCCCHhHHHHHHHHHhc
Q psy10052 146 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV--------ESTLALTEGLSHGSSLYRHEIAFVLGQ 217 (500)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~~--------~~i~~l~~~L~~~~~~vr~~a~~aL~~ 217 (500)
...+..+.+++ .+.+..++..++.+|.++... ..+..+..+|+++|+.++..++.++..
T Consensus 149 -----------~~V~~~l~sLl--~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 149 -----------KLVRTYINELV--VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp -----------HHHHHHHHHHH--TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH--hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22355566666 456677777777777665431 234445555566677777777666655
Q ss_pred cC
Q psy10052 218 MQ 219 (500)
Q Consensus 218 ~~ 219 (500)
+-
T Consensus 216 il 217 (265)
T 3b2a_A 216 AL 217 (265)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 81
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=98.15 E-value=0.00037 Score=76.36 Aligned_cols=238 Identities=14% Similarity=0.140 Sum_probs=163.1
Q ss_pred ChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhh--cCCchHHHHHHHhhcC
Q psy10052 189 SVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGA--IATPECYDVLRKYLSD 266 (500)
Q Consensus 189 ~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~--~~~~~~~~~L~~~l~~ 266 (500)
+.+.+..+.+.+.. .+..|.....+|...|.+.++..+.+.+.+.+-+......++..+.. ..++..+..+..++.+
T Consensus 324 ~~e~L~~l~~~~~~-~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~~Pt~e~l~~~~~l~~~ 402 (1056)
T 1lsh_A 324 DAGVLQSIWHKLHQ-QKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYARELLNT 402 (1056)
T ss_dssp CHHHHHHHHHHHTT-SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhc-cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC
Confidence 44555556655543 36788889999999999999999999988654443221112212222 2345678888888876
Q ss_pred C----cHHHHHHHHHHhhhccccchhHhHHHHhhhccCCC-ChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChhhHH
Q psy10052 267 E----KVVVRQSCEIALDMCDYENSVELQYADTLCKFKMI-PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQ 341 (500)
Q Consensus 267 ~----~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~ 341 (500)
+ ++.+|..+..+++.+....+... ...... -......+.+.+...+ ...+..++.+||++|.+..++
T Consensus 403 ~~~~~~~~l~~ta~La~gslV~k~c~~~------~~c~~~~v~~i~~~l~~~~~~~~--~~~~~~~LkaLGN~g~p~~l~ 474 (1056)
T 1lsh_A 403 SFIRNRPILRKTAVLGYGSLVFRYCANT------VSCPDELLQPLHDLLSQSSDRAK--EEEIVLALKALGNAGQPNSIK 474 (1056)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHTTC------SSCCGGGTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTCGGGHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHhccC------CCCCHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHhhccCChhHHH
Confidence 4 57899999999986543221100 000000 0112223444444443 467899999999999999999
Q ss_pred HHHHHhcC-------CCHHHHHHHHHHHhccCCCc---cHHHHHHHhhcCCCCHHHHHHHHHHHhhc-CCccHHHHHHHh
Q psy10052 342 CISEAFAD-------KSALLKHELAYCLGQMKDSD---ANDILRQVLEDKSQEPMVRHEAAEALGAI-GDKSSISILEKY 410 (500)
Q Consensus 342 ~L~~~l~~-------~~~~vr~~a~~aL~~l~~~~---~~~~L~~~l~~~~~~~~vR~~a~~aL~~~-~~~~~~~~L~~~ 410 (500)
.|..++.. ....+|.+|+++|..+.... +.+.|..++.|..+++++|.+|+..|-+- ++...+..+...
T Consensus 475 ~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l~~ia~~ 554 (1056)
T 1lsh_A 475 KIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVR 554 (1056)
T ss_dssp HHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99888752 24578899999999997643 77889999988888999999999999874 445566667666
Q ss_pred h-cCCCHhHHHHHHHHHHHhhhhhhc
Q psy10052 411 A-QDPVKEVSETCYLALKRIQFVTEE 435 (500)
Q Consensus 411 l-~d~~~~vr~~A~~aL~~l~~~~~~ 435 (500)
+ .+++..|+......|..+.....+
T Consensus 555 l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 555 LRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 6 568999998888888888765433
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.06 E-value=0.00049 Score=75.39 Aligned_cols=445 Identities=11% Similarity=-0.003 Sum_probs=224.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHcc-CCCHHHHHHHHHHHHcc-----C--CC----ccHHH
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG-KTAIQCISEAFA-DESALLKHELAYCLGQM-----K--DS----DANDI 73 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~-----~--~~----~~~~~ 73 (500)
+..++..+-+++.. .|..|-..|.+... +.+...+...|. +.++.+|..|+..|... . ++ .....
T Consensus 9 l~~~l~~~~~~d~~--~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 9 LEEAVVSFYRSNSQ--NQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp --CTHHHHHTSTTT--C----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHcCCCHH--HHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 33444445677776 89999999998754 456667778885 67899999999998753 1 11 22455
Q ss_pred HHHHhhcc-CCCHHHHHHHHHHHHhc------CChhhHHHHHHHhcCC------CHHHHHHHHHHHHHhchhcc-chhh-
Q psy10052 74 LRQVLEDK-SQEPMVRHEAAEALGAI------GDKSSISILEKYAQDP------VKEVSETCYLALKRIQFVTE-EDKQ- 138 (500)
Q Consensus 74 L~~~L~~~-~~d~~vr~~a~~aL~~~------~~~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~~~~~~-~~~~- 138 (500)
|++.+... +..+.||...+.+++.+ .+++.++.|...++.+ ++..+..+...|..+.+... ....
T Consensus 87 ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 87 ILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 55655542 11478999999888775 4667888888888765 56778888888887764210 0000
Q ss_pred ---ccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcC------HHHHHHHHHHHHc------CCC---hhhHHHHHhhc
Q psy10052 139 ---KDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED------LFMRYKAMFKLRD------INS---VESTLALTEGL 200 (500)
Q Consensus 139 ---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~------~~~r~~A~~~L~~------~~~---~~~i~~l~~~L 200 (500)
.+. ..... .+ +..++.+...+.+.+.+ ..++..++.++.. +.. ...++.+.. |
T Consensus 167 ~r~~~~-~~l~~-----~~--~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L 237 (971)
T 2x1g_F 167 KRVVLR-AEIAK-----RV--QLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-V 237 (971)
T ss_dssp CHHHHH-HHHHT-----TH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-H
T ss_pred HHHHHH-HHHHH-----HH--HHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-h
Confidence 000 00000 00 12233333444322211 1467777777754 111 134444444 3
Q ss_pred ----------------cCCCHhHHHHHHHHHhccCCC----C-------cHHHHHHHhh----c-cCCC---HHHHHHHH
Q psy10052 201 ----------------SHGSSLYRHEIAFVLGQMQNP----S-------SIPALTSALE----D-QTQN---EMVRHECA 245 (500)
Q Consensus 201 ----------------~~~~~~vr~~a~~aL~~~~~~----~-------~i~~L~~~l~----~-~~~~---~~vr~~a~ 245 (500)
.++++.+|..++.++..+-.. + .++.+..+.. . .+.+ .+.....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~ 317 (971)
T 2x1g_F 238 VHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIY 317 (971)
T ss_dssp HHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHH
T ss_pred hhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHH
Confidence 114678888888888665421 1 1222222111 0 1122 14554555
Q ss_pred HHHhhcCCc---------------------hHHHHHHHhhcC-----CcHHHHHHHHHHhhhcccc----------chhH
Q psy10052 246 EALGAIATP---------------------ECYDVLRKYLSD-----EKVVVRQSCEIALDMCDYE----------NSVE 289 (500)
Q Consensus 246 ~aL~~~~~~---------------------~~~~~L~~~l~~-----~~~~vr~~a~~al~~l~~~----------~~~~ 289 (500)
+.+..++.. ..++.+...... .+..+...++.....+... ....
T Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 397 (971)
T 2x1g_F 318 MLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCW 397 (971)
T ss_dssp HHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 555433311 112222333222 2444555544433222110 0000
Q ss_pred hHHHHhhhccCCCChHHHHHHHHHhhcCCC------C------H-HHHHHHHHHHH---hcCChhhHHHH----HHHhcC
Q psy10052 290 LQYADTLCKFKMIPEEKILLIGQVLKDSSK------P------L-KERFRALFTLK---NIGGKTAIQCI----SEAFAD 349 (500)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~------~------~-~~r~~a~~~L~---~~~~~~~~~~L----~~~l~~ 349 (500)
..+...+. ..++.+...+.-++. + . .-|..+...+. .......++.+ ...+..
T Consensus 398 ~~~~~~~~-------~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~ 470 (971)
T 2x1g_F 398 EYIKPLYA-------HLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIAD 470 (971)
T ss_dssp HHHHHHHH-------HHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 00000000 011111111211110 0 0 13444444443 22223444433 333432
Q ss_pred -----CCHHHHHHHHHHHhccCCC------ccHHHHHHHhhcC---CCCHHHHHHHHHHHhhcCC-----c----cHHHH
Q psy10052 350 -----KSALLKHELAYCLGQMKDS------DANDILRQVLEDK---SQEPMVRHEAAEALGAIGD-----K----SSISI 406 (500)
Q Consensus 350 -----~~~~vr~~a~~aL~~l~~~------~~~~~L~~~l~~~---~~~~~vR~~a~~aL~~~~~-----~----~~~~~ 406 (500)
.++..+.+++.+++.+... ..++.++.++..- +.++.||..+++++|++.. + .+++.
T Consensus 471 ~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~ 550 (971)
T 2x1g_F 471 LQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINL 550 (971)
T ss_dssp HHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6788899999999988653 2445555544211 1279999999999998642 2 34555
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHh
Q psy10052 407 LEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRD 486 (500)
Q Consensus 407 L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~ 486 (500)
|...+ | +.|+..|+.++..+-........ + .-+..+..|.+++...+.+...+.....+++.
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~-----p----------~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~ 612 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRDCQLQLK-----P----------YADPLLNACHASLNTGRMKNSDSVRLMFSIGK 612 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHHCHHHHH-----H----------HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHHHHHhcc-----c----------cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 66666 3 78999999999998753321111 0 11356666777776444456788888888888
Q ss_pred c
Q psy10052 487 I 487 (500)
Q Consensus 487 ~ 487 (500)
+
T Consensus 613 i 613 (971)
T 2x1g_F 613 L 613 (971)
T ss_dssp H
T ss_pred H
Confidence 7
No 83
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.05 E-value=0.00017 Score=62.79 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=102.4
Q ss_pred HHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC-CccHHHHHH-HhhcCCCCHHHHHHHHHHHhhcC----CccH
Q psy10052 330 TLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD-SDANDILRQ-VLEDKSQEPMVRHEAAEALGAIG----DKSS 403 (500)
Q Consensus 330 ~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~-~~~~~~L~~-~l~~~~~~~~vR~~a~~aL~~~~----~~~~ 403 (500)
.+.....+...+....+..++...+|..|+..|++... ...++.+.. +..++ +|.||..+..+++.+. ....
T Consensus 63 ~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~~~~~~~L~~ir~~va~D~--~WrVre~lA~a~~~~~~~~~pe~~ 140 (240)
T 3l9t_A 63 DYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDKEILIFMRDEVSKDN--NWRVQEVLAKAFDEFCKKIEYKKA 140 (240)
T ss_dssp HHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTSHHHHHHHHHTGGGCS--CHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhccCcHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHhcCHHHH
Confidence 33333434555666778888889999999999998721 124566665 44444 7999999999988763 3346
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHH
Q psy10052 404 ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFK 483 (500)
Q Consensus 404 ~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~a 483 (500)
++.+..++.|++..||..|...+.-.... +... ..++.+-.+++.|. .+++++||..-+++
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-----------------~~~k-~dp~~ll~iL~~L~-~D~s~yVrKSVan~ 201 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNR-----------------PYFK-ENPNEAIRRIADLK-EDVSEYVRKSVGNA 201 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGS-----------------TTTT-TCHHHHHHHHHTTT-TCSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhcc-----------------chhh-cCHHHHHHHHHHhc-CChHHHHHHHHHHH
Confidence 88999999999999999998887643221 0001 12233344444343 67888999999999
Q ss_pred hHhcC--ChhhHHHhhc
Q psy10052 484 LRDIN--SVESTLALTE 498 (500)
Q Consensus 484 l~~~g--~~~~~~~l~~ 498 (500)
|.++. .|+.|..+++
T Consensus 202 LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 202 LRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhCHHHHHHHHH
Confidence 99995 7887777654
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.96 E-value=0.0036 Score=68.38 Aligned_cols=120 Identities=12% Similarity=-0.018 Sum_probs=77.3
Q ss_pred HccCCCHHHHHHHHHHHHcc-CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------------Chh----hHHHH
Q psy10052 46 AFADESALLKHELAYCLGQM-KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------------DKS----SISIL 107 (500)
Q Consensus 46 ~l~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------------~~~----~~~~L 107 (500)
..-++|..+| |-..|.++ ..++....|...+.+.+.+..+|..|+-.|.+.- .++ .-..|
T Consensus 13 ~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~l 90 (960)
T 1wa5_C 13 ESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEI 90 (960)
T ss_dssp HTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHH
T ss_pred HhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHH
Confidence 3346777777 77777766 4567788899998776446889999999887531 111 22345
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcC
Q psy10052 108 EKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 187 (500)
Q Consensus 108 ~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~ 187 (500)
+..+.++.+.||..+..+++.+....-.. . + +..++.|.+.+.+.+. ..+..++.+|..+
T Consensus 91 l~~l~~~~~~ir~~l~~~ia~ia~~d~p~------~-W-----------p~ll~~L~~~l~s~~~--~~~~~aL~~l~~i 150 (960)
T 1wa5_C 91 VPLMISLPNNLQVQIGEAISSIADSDFPD------R-W-----------PTLLSDLASRLSNDDM--VTNKGVLTVAHSI 150 (960)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHSTT------T-C-----------TTHHHHHHTTCCSSCT--THHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCcc------c-h-----------hHHHHHHHHHhCCCCH--HHHHHHHHHHHHH
Confidence 66666666899999999988875421000 0 0 3457888888855433 3566676666543
No 85
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.80 E-value=0.00074 Score=58.79 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-ChhhHHHHHH-HhcCCCHHHHHHHHHHH
Q psy10052 49 DESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-DKSSISILEK-YAQDPVKEVSETCYLAL 126 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-~~~~~~~L~~-~l~d~~~~vr~~a~~aL 126 (500)
++...+-..|-..+.....++..+....+.+++ .-.||..|+..||... ....++.+.. +..|++..||..+..++
T Consensus 51 ~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~--~deVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~WrVre~lA~a~ 128 (240)
T 3l9t_A 51 HGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSD--VYQVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAF 128 (240)
T ss_dssp ---CHHHHHHHHHHHHSCHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCc--chHHHHHHHHHHHhccCcHHHHHHHHHHhCCCCCccHHHHHHHHH
Confidence 333344444555555554344444344444444 3478888888888662 2345555655 55677888888888888
Q ss_pred HHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcC-------CCh-hhHHHHHh
Q psy10052 127 KRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI-------NSV-ESTLALTE 198 (500)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~-------~~~-~~i~~l~~ 198 (500)
+.+.... +| +..++.+.....| ++.++|..|+..+... .++ ..++.+..
T Consensus 129 ~~~~~~~---------------~p------e~~l~~~~~W~~d--~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~ 185 (240)
T 3l9t_A 129 DEFCKKI---------------EY------KKALPIIDEWLKS--SNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIAD 185 (240)
T ss_dssp HHHHHHH---------------CT------TTTHHHHHHHHHC--SSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHT
T ss_pred HHHHHhc---------------CH------HHHHHHHHHHhcC--CCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHH
Confidence 7765310 00 2235566666644 4566777777765321 111 24444444
Q ss_pred hccCCCHhHHHHHHHHHhccC
Q psy10052 199 GLSHGSSLYRHEIAFVLGQMQ 219 (500)
Q Consensus 199 ~L~~~~~~vr~~a~~aL~~~~ 219 (500)
+..|++..||+.+..+|..+.
T Consensus 186 L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 186 LKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp TTTCSCHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHh
Confidence 555666677777776665554
No 86
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.79 E-value=0.0057 Score=67.04 Aligned_cols=232 Identities=11% Similarity=0.039 Sum_probs=157.4
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHH---h--cCChhhHHHHHHHhc
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALG---A--IGDKSSISILEKYAQ 112 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~---~--~~~~~~~~~L~~~l~ 112 (500)
+.+..+.+-+.+ .+..|.-.+.+|...|+..++..+.+.+...+-+... |+++|. . ..+++.+..+..+++
T Consensus 326 e~L~~l~~~~~~-~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e---a~~~l~~~~~~~~Pt~e~l~~~~~l~~ 401 (1056)
T 1lsh_A 326 GVLQSIWHKLHQ-QKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE---ATQIVASTLSNQQATRESLSYARELLN 401 (1056)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH---HHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH---HHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 344444444433 4677778899999999999999999999876322222 333332 2 245577888888886
Q ss_pred C----CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCC
Q psy10052 113 D----PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN 188 (500)
Q Consensus 113 d----~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~ 188 (500)
+ .++.+|..|..+++.+-....... .. + +...+ ......+.+.+... +...+..++.+|++.|
T Consensus 402 ~~~~~~~~~l~~ta~La~gslV~k~c~~~------~~--c-~~~~v--~~i~~~l~~~~~~~--~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 402 TSFIRNRPILRKTAVLGYGSLVFRYCANT------VS--C-PDELL--QPLHDLLSQSSDRA--KEEEIVLALKALGNAG 468 (1056)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHHTTC------SS--C-CGGGT--HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHT
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhccC------CC--C-CHHHH--HHHHHHHHHHHhcC--ChHHHHHHHHHhhccC
Confidence 6 457899999999988754321110 00 0 00000 23344455556443 4557889999999999
Q ss_pred ChhhHHHHHhhccC-------CCHhHHHHHHHHHhccCCC---CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-chHH
Q psy10052 189 SVESTLALTEGLSH-------GSSLYRHEIAFVLGQMQNP---SSIPALTSALEDQTQNEMVRHECAEALGAIAT-PECY 257 (500)
Q Consensus 189 ~~~~i~~l~~~L~~-------~~~~vr~~a~~aL~~~~~~---~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~ 257 (500)
.+..++.|.+.+.. ....||..|+.+|.++... .+.+.+.+++.|..+++++|.+|...|-.... ...+
T Consensus 469 ~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l 548 (1056)
T 1lsh_A 469 QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALV 548 (1056)
T ss_dssp CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHH
T ss_pred ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHHH
Confidence 99999999998742 2457889999999988754 25677888888877899999999999987543 4466
Q ss_pred HHHHHhhc-CCcHHHHHHHHHHhhhccccc
Q psy10052 258 DVLRKYLS-DEKVVVRQSCEIALDMCDYEN 286 (500)
Q Consensus 258 ~~L~~~l~-~~~~~vr~~a~~al~~l~~~~ 286 (500)
..+...+. +++..|+......|..+....
T Consensus 549 ~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 549 SMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 77776665 468888887777666554443
No 87
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.68 E-value=0.06 Score=54.29 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=56.9
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHcc-C-CCHHHHHHHHHHHHccCCCccHHHH
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGG-------KTAIQCISEAFA-D-ESALLKHELAYCLGQMKDSDANDIL 74 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~-------~~~~~~L~~~l~-~-~~~~vR~~a~~~L~~~~~~~~~~~L 74 (500)
.++++.|...|.+..- ...|..|+..|..+.. ...++.|+..|+ | .|..+-..+++.|..+-....-+.-
T Consensus 20 ~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~ 98 (651)
T 3grl_A 20 AETIQKLCDRVASSTL-LDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV 98 (651)
T ss_dssp HHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred hhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence 3566666666665433 2467777777766542 124566666664 2 3444444555555322110000000
Q ss_pred HHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 75 RQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 75 ~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
.. .... +...+..+-++.+- ..++.++.|+.+|++++..+|..+++.|..+.
T Consensus 99 ~~-~~~~-~~~~~~~~~~d~f~--~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~ 150 (651)
T 3grl_A 99 EE-NSTR-QSEDLGSQFTEIFI--KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLL 150 (651)
T ss_dssp -----------CHHHHHHHHHH--HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cc-cccc-cchHHHHHHHHHHH--cCCccHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 00 0000 00112222222221 23456667777777777777777777766654
No 88
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.66 E-value=0.032 Score=56.21 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=56.5
Q ss_pred CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------------ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 66 KDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------------DKSSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 66 ~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
..++.++.|+.+|+.. |-++|.++++.|..+. .+..++.|+.+|.|+...+|..++..|..+...
T Consensus 119 ~~~~~i~~Ll~lL~~~--df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 119 KQQENVTLLLSLLEEF--DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HSTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred cCCccHHHHHHHhcCc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 4567889999999888 8999999999998764 346789999999999999999999999998764
Q ss_pred c
Q psy10052 133 T 133 (500)
Q Consensus 133 ~ 133 (500)
+
T Consensus 197 n 197 (651)
T 3grl_A 197 N 197 (651)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.66 E-value=0.0046 Score=68.23 Aligned_cols=408 Identities=12% Similarity=0.021 Sum_probs=209.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHcc-CCCHHHHHHHHHHHHcc-----C--CC----ccHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIG-GKTAIQCISEAFA-DESALLKHELAYCLGQM-----K--DS----DAND 72 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~-~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~-----~--~~----~~~~ 72 (500)
.+..++..+-+|+.. .|..|-..|.+.. .+.....+...|. +.++.+|..|+..|... . ++ ....
T Consensus 17 ~l~~~l~~~~~p~~~--~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGV--QQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHHHCCHH--HHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 344555555567754 8999999998764 3445556666664 67899999999988753 1 11 2234
Q ss_pred HHHHHhhccCC-------CHHHHHHHHHHHHhc-------CChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccch-h
Q psy10052 73 ILRQVLEDKSQ-------EPMVRHEAAEALGAI-------GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEED-K 137 (500)
Q Consensus 73 ~L~~~L~~~~~-------d~~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~-~ 137 (500)
.|+..+.+... ++.+|...+.+++.+ .+++.++.|...++ .++..+..+...|..+....... .
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~ 173 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSA 173 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcc
Confidence 55555554310 267888888888765 36788999999987 56666777777877766432100 0
Q ss_pred --h------ccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC---------hhhHHHHHhhc
Q psy10052 138 --Q------KDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS---------VESTLALTEGL 200 (500)
Q Consensus 138 --~------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~---------~~~i~~l~~~L 200 (500)
. .+. ..+.. .+ +..+..+...+.+. .+..++..++.++...-. ...++.+...+
T Consensus 174 ~~~~~~r~~~lk-~~l~~-----~~--~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~ 244 (1049)
T 3m1i_C 174 EQMTQAKALHLK-NSMSK-----EF--EQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKF 244 (1049)
T ss_dssp TTSCHHHHHHHH-HHHHH-----HH--HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHH
T ss_pred hhhhhHHHHHHH-HHHHH-----HH--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHh
Confidence 0 000 00000 00 11233334445432 345678888888765221 12344444222
Q ss_pred cCCCHhHHHHHHHHHhccCC----CC---cHH-------HHHHHh---------------hc-cCCCHHHHHHHHHHHhh
Q psy10052 201 SHGSSLYRHEIAFVLGQMQN----PS---SIP-------ALTSAL---------------ED-QTQNEMVRHECAEALGA 250 (500)
Q Consensus 201 ~~~~~~vr~~a~~aL~~~~~----~~---~i~-------~L~~~l---------------~~-~~~~~~vr~~a~~aL~~ 250 (500)
. .++.+|..++.+|..+-. +. ... .++..+ .+ .+.+.++....++.+..
T Consensus 245 l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 245 M-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp H-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred C-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence 1 367888888887755431 11 011 112211 11 11233333334433322
Q ss_pred cCC------------c----hHHHHHHHhhcCCcHHHHHHHHHHhhhccc----cchhHhHHHHhhhccCCCChHHHHHH
Q psy10052 251 IAT------------P----ECYDVLRKYLSDEKVVVRQSCEIALDMCDY----ENSVELQYADTLCKFKMIPEEKILLI 310 (500)
Q Consensus 251 ~~~------------~----~~~~~L~~~l~~~~~~vr~~a~~al~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~l 310 (500)
++. . ..++.+......++..+...+..-...+.. .......+...+. .-++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-------~Lv~~l 396 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-------QLRLVI 396 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-------HHHHHH
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-------HHHHHH
Confidence 211 0 124444444556666666666544332221 0000000000000 000111
Q ss_pred HHHhhc---------C--------CCC---HHHHHHH---HHHHHhcCChhhHHHHH----HHhc--CCCHHHHHHHHHH
Q psy10052 311 GQVLKD---------S--------SKP---LKERFRA---LFTLKNIGGKTAIQCIS----EAFA--DKSALLKHELAYC 361 (500)
Q Consensus 311 ~~~l~~---------~--------~~~---~~~r~~a---~~~L~~~~~~~~~~~L~----~~l~--~~~~~vr~~a~~a 361 (500)
...+.. . ..+ +..|..+ +..+........++.+. ..+. ..+|..+.+++.+
T Consensus 397 l~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~a 476 (1049)
T 3m1i_C 397 IENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWA 476 (1049)
T ss_dssp HHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 111100 0 001 1223222 33344444444444443 3443 3688899999999
Q ss_pred HhccCCC-------ccHHHHHHHhhc----C---CCCHHHHHHHHHHHhhcC-----Ccc----HHHHHHHhhcCCCHhH
Q psy10052 362 LGQMKDS-------DANDILRQVLED----K---SQEPMVRHEAAEALGAIG-----DKS----SISILEKYAQDPVKEV 418 (500)
Q Consensus 362 L~~l~~~-------~~~~~L~~~l~~----~---~~~~~vR~~a~~aL~~~~-----~~~----~~~~L~~~l~d~~~~v 418 (500)
+|.+... ...+.+...+.. . ...+.+|..++..+|++. +++ +++.|...+.++++.|
T Consensus 477 lgsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V 556 (1049)
T 3m1i_C 477 IGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGV 556 (1049)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 9988652 123333333311 0 014666767899999653 333 4455556678889999
Q ss_pred HHHHHHHHHHhhhhh
Q psy10052 419 SETCYLALKRIQFVT 433 (500)
Q Consensus 419 r~~A~~aL~~l~~~~ 433 (500)
+..|+.++.++....
T Consensus 557 ~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 90
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.55 E-value=0.0022 Score=68.41 Aligned_cols=187 Identities=15% Similarity=0.146 Sum_probs=133.9
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHcc---CCCc----cHHHHHHHhhccCCCHHHHHHHHHHHHhcCC----------h
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQM---KDSD----ANDILRQVLEDKSQEPMVRHEAAEALGAIGD----------K 101 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~~---~~~~----~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~----------~ 101 (500)
.++.+++.+.|....||..|..++..+ -++. .+|.|...|.... .|..+..|+..++.+.. +
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 456777788899999999877765543 2333 4577777786653 69999999999998753 3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHH
Q psy10052 102 SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 181 (500)
Q Consensus 102 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~ 181 (500)
+.+|.+..++.|..+.|..+|..++..++..-....+ +..++.|++++.+++. --.++
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------------------~~~~~~~~~~~~~p~~----~~~~~ 232 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------------------ERFIPSLIQCIADPTE----VPETV 232 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------------------GGGHHHHHHHHHCTTH----HHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------------------hhhHHHHHHHhcChhh----hHHHH
Confidence 6788889999999999999999999998865444333 6679999999977643 33456
Q ss_pred HHHHcCC-----Chh----hHHHHHhhccCCCHhHHHHHHHHHhccC----C--------CCcHHHHHHHhhccCCCHHH
Q psy10052 182 FKLRDIN-----SVE----STLALTEGLSHGSSLYRHEIAFVLGQMQ----N--------PSSIPALTSALEDQTQNEMV 240 (500)
Q Consensus 182 ~~L~~~~-----~~~----~i~~l~~~L~~~~~~vr~~a~~aL~~~~----~--------~~~i~~L~~~l~~~~~~~~v 240 (500)
..|+..- +.+ .+|.|.+.|++....+++.++-.+.++. + |..+|.+....... .+|++
T Consensus 233 ~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~-~~pe~ 311 (986)
T 2iw3_A 233 HLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI-ADPEA 311 (986)
T ss_dssp HHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC-CSHHH
T ss_pred HHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc-CCHHH
Confidence 6666421 222 4566777778888888888877776654 2 34455555544433 47999
Q ss_pred HHHHHHHHh
Q psy10052 241 RHECAEALG 249 (500)
Q Consensus 241 r~~a~~aL~ 249 (500)
|..+..|+.
T Consensus 312 r~~~~~a~~ 320 (986)
T 2iw3_A 312 REVTLRALK 320 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888874
No 91
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.51 E-value=0.094 Score=56.99 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHccCC---CHHHHHHHHHHHHc----cCCC----c---cHHHHHHHhhc
Q psy10052 16 DSSKPLKERFRALFTLKNIG-GKTAIQCISEAFADE---SALLKHELAYCLGQ----MKDS----D---ANDILRQVLED 80 (500)
Q Consensus 16 ~~~~~~~~R~~A~~~L~~~~-~~~~~~~L~~~l~~~---~~~vR~~a~~~L~~----~~~~----~---~~~~L~~~L~~ 80 (500)
+|+.+...|..|...|.+.. .+.+.......|.++ ++.+|..++..|.. +... . ....|+..+..
T Consensus 17 ~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~ 96 (980)
T 3ibv_A 17 DPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE 96 (980)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 55433459999999999875 455677777778643 79999999888774 3333 1 23445555553
Q ss_pred c---CCCHHHHHHHHHHHHhc-------CChhhHHHHHHHhcCCCH-HHHHHHHHHHHHh
Q psy10052 81 K---SQEPMVRHEAAEALGAI-------GDKSSISILEKYAQDPVK-EVSETCYLALKRI 129 (500)
Q Consensus 81 ~---~~d~~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~ 129 (500)
. +..+.+|...+.++..+ .+++.++.|+.+++.+++ .........|..+
T Consensus 97 ~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i 156 (980)
T 3ibv_A 97 LSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSI 156 (980)
T ss_dssp CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 2 12578999998888765 357888999988865433 3334444455533
No 92
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.49 E-value=0.014 Score=62.41 Aligned_cols=184 Identities=16% Similarity=0.178 Sum_probs=109.5
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh------------hhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchh
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDK------------SSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDK 137 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ 137 (500)
..+.|.+.+.+.+ ++ ..|+.+++.+... ..++.++....|....||.+|..++..+-.......
T Consensus 55 ~~~~~~~~~~~k~-~~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKK-TA---ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHH-HH---HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccC-CH---HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 4566666666653 22 6666666665421 234666667788888888877777665543221111
Q ss_pred hccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC----------hhhHHHHHhhccCCCHhH
Q psy10052 138 QKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS----------VESTLALTEGLSHGSSLY 207 (500)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~----------~~~i~~l~~~L~~~~~~v 207 (500)
. ...++.|...+.+. ..+..+..|+..+..+.. ++.+|.+...+-|..++|
T Consensus 131 ~------------------~~~~~~~~~~~~~~-~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v 191 (986)
T 2iw3_A 131 I------------------KALLPHLTNAIVET-NKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEV 191 (986)
T ss_dssp H------------------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred H------------------HHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHH
Confidence 1 22466677777432 346667777776665432 256677777777777888
Q ss_pred HHHHHHHHhccC----CC---CcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC-----c----hHHHHHHHhhcCCcHHH
Q psy10052 208 RHEIAFVLGQMQ----NP---SSIPALTSALEDQTQNEMVRHECAEALGAIAT-----P----ECYDVLRKYLSDEKVVV 271 (500)
Q Consensus 208 r~~a~~aL~~~~----~~---~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----~----~~~~~L~~~l~~~~~~v 271 (500)
..++..++..+. +. ..+|.|++++.+++ -.-.++..|+.... . -..|.|.+.|+.....+
T Consensus 192 ~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~----~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~ 267 (986)
T 2iw3_A 192 KAAATAAMTKATETVDNKDIERFIPSLIQCIADPT----EVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGI 267 (986)
T ss_dssp HHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT----HHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh----hhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchh
Confidence 887777664433 32 45788888887743 23455666764432 1 13677777777776666
Q ss_pred HHHHHHHhh
Q psy10052 272 RQSCEIALD 280 (500)
Q Consensus 272 r~~a~~al~ 280 (500)
++.++..+.
T Consensus 268 ~r~~~~~~~ 276 (986)
T 2iw3_A 268 KRKSAVIID 276 (986)
T ss_dssp HHHHHHHHH
T ss_pred heeeEEEEc
Confidence 665555444
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.46 E-value=0.0069 Score=59.26 Aligned_cols=215 Identities=15% Similarity=0.118 Sum_probs=133.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcC-------------CcchHHHHHHHcc-CC---------CHHHHHHHHHHHHc
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIG-------------GKTAIQCISEAFA-DE---------SALLKHELAYCLGQ 64 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~-------------~~~~~~~L~~~l~-~~---------~~~vR~~a~~~L~~ 64 (500)
+.|...|-++. |.+|.-|+-.|.++- +....-.|+-.|. |. -..||..++.+||.
T Consensus 177 E~L~~DLFdp~--WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 177 EQISDNLLSYE--WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp HHHHHHTTCSS--HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcc--hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45667777766 679999998888742 1123334444332 22 16899999999998
Q ss_pred cCC-CccHHHHHHHh---hccCCCHHHHHHHHHHHHhcCC-----hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccc
Q psy10052 65 MKD-SDANDILRQVL---EDKSQEPMVRHEAAEALGAIGD-----KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEE 135 (500)
Q Consensus 65 ~~~-~~~~~~L~~~L---~~~~~d~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 135 (500)
+.. +.....|..++ ... .|+||..+.-.|..+.+ +..++.++..|+|+|..||..|+.+|.-+......
T Consensus 255 L~hLp~e~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l 332 (800)
T 3oc3_A 255 IYPLIGPNDIIEQLVGFLDSG--DWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSL 332 (800)
T ss_dssp HTTTSCSCCHHHHHTTGGGCS--CHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTH
T ss_pred HHhCChhHHHHHHHHhhcCCC--CeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhH
Confidence 722 11133344443 555 79999999888877633 35677888899999999999999999776521111
Q ss_pred hhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCC---CcCHHHHHHHHHHHHc-----CCChhhHHHHHhhccCCCHhH
Q psy10052 136 DKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNE---NEDLFMRYKAMFKLRD-----INSVESTLALTEGLSHGSSLY 207 (500)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~---~~~~~~r~~A~~~L~~-----~~~~~~i~~l~~~L~~~~~~v 207 (500)
...+..+-.+|.+. +.+..--+.-+..|.. ...+..++.|.+.+.++-+.|
T Consensus 333 ---------------------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 333 ---------------------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp ---------------------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHH
T ss_pred ---------------------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHH
Confidence 11223333333221 1111111111222222 123467888899999999999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHH-hhccCCCHHHHHHHHHHHh
Q psy10052 208 RHEIAFVLGQMQNPSSIPALTSA-LEDQTQNEMVRHECAEALG 249 (500)
Q Consensus 208 r~~a~~aL~~~~~~~~i~~L~~~-l~~~~~~~~vr~~a~~aL~ 249 (500)
|.++++++..+-...++..+.+. |-. ++.+++..+.....
T Consensus 392 R~AVL~TL~tfL~~~~LRLIFQNILLE--~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLSEESIDFLVAEVVLIE--EKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhC--CcHHHHHHHHHHHH
Confidence 99999999887755556655543 333 46788888877764
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.41 E-value=0.0035 Score=61.30 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHhhcCC-----chHHHHHHHhhcCCcHHHHHHHHHHhhhc
Q psy10052 237 NEMVRHECAEALGAIAT-----PECYDVLRKYLSDEKVVVRQSCEIALDMC 282 (500)
Q Consensus 237 ~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~~~~~~vr~~a~~al~~l 282 (500)
.+++|..+.-+|..+.+ +..++.+...|.|.|..||..|+.+|--+
T Consensus 276 ~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 276 DWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp CHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred CeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhh
Confidence 46666666555543311 23455555666666666666666666544
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.31 E-value=0.1 Score=56.91 Aligned_cols=190 Identities=16% Similarity=0.058 Sum_probs=108.5
Q ss_pred HHHHHHH-ccCCCHHHHHHHHHHHHccC-CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------Ch----hhHHH
Q psy10052 40 IQCISEA-FADESALLKHELAYCLGQMK-DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------DK----SSISI 106 (500)
Q Consensus 40 ~~~L~~~-l~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~----~~~~~ 106 (500)
+..+++. +.++++..|..|-..|.++. .+.++..+..+|..+. ++.||..|+..|.+.- .+ .....
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~-~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 104 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK-VPEIQYFGASALHIKISRYWSDIPTDQYESLKAQ 104 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHH
Confidence 3344444 45789999999999998874 5678888888887643 7899999999997531 11 12234
Q ss_pred HHHHhcC---CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCC---CcCHHHHHHH
Q psy10052 107 LEKYAQD---PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNE---NEDLFMRYKA 180 (500)
Q Consensus 107 L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~---~~~~~~r~~A 180 (500)
|+.++.+ ..+.||.....+++.+....-. .+ | +..++.+...+.+. ..+...+..+
T Consensus 105 ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p------~~-W-----------p~~l~~l~~~~~~~~~~~~~~~~~~~~ 166 (963)
T 2x19_B 105 LFTQITRFASGSKIVLTRLCVALASLALSMMP------DA-W-----------PCAVADMVRLFQAEDSPVDGQGRCLAL 166 (963)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT------TT-S-----------TTHHHHHHHHHCC------CHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc------cc-c-----------chHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 4454432 3588999999998887532100 00 0 34588888888531 0132334444
Q ss_pred HHHHHcCCC-----------------------hhhHHHHHhhccCC--CHhHHHHHHHHHhcc---CC-----CCcHHHH
Q psy10052 181 MFKLRDINS-----------------------VESTLALTEGLSHG--SSLYRHEIAFVLGQM---QN-----PSSIPAL 227 (500)
Q Consensus 181 ~~~L~~~~~-----------------------~~~i~~l~~~L~~~--~~~vr~~a~~aL~~~---~~-----~~~i~~L 227 (500)
+..|..+.. +..++.+...+.+. +..++..++.++... +. ...++.+
T Consensus 167 l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l 246 (963)
T 2x19_B 167 LELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAA 246 (963)
T ss_dssp HHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHH
T ss_pred HHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHH
Confidence 443332110 11233334444432 223677777766421 21 2234444
Q ss_pred HHHhhccCCCHHHHHHHHHHHhhcC
Q psy10052 228 TSALEDQTQNEMVRHECAEALGAIA 252 (500)
Q Consensus 228 ~~~l~~~~~~~~vr~~a~~aL~~~~ 252 (500)
.+.+.+ +.++..|+.++..+-
T Consensus 247 ~~~l~~----~~~~~~a~~~l~~i~ 267 (963)
T 2x19_B 247 FAALQD----SELFDSSVEAIVNAI 267 (963)
T ss_dssp HHHTTS----TTTHHHHHHHHHHHH
T ss_pred HHHhCC----chHHHHHHHHHHHHH
Confidence 555543 457888888887553
No 96
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.29 E-value=0.059 Score=58.88 Aligned_cols=89 Identities=11% Similarity=-0.061 Sum_probs=58.2
Q ss_pred HHHHHccCCCHHHHHHHHHHHHccC-CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------Ch----hhHHHHHH
Q psy10052 42 CISEAFADESALLKHELAYCLGQMK-DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------DK----SSISILEK 109 (500)
Q Consensus 42 ~L~~~l~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~----~~~~~L~~ 109 (500)
.++..+-++++..|..|-..|.++. .++++..+..+|..+. ++.||..|+..|.+.- .+ ..-..|+.
T Consensus 11 ~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~-~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 89 (971)
T 2x1g_F 11 EAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGK-SQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILE 89 (971)
T ss_dssp CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTS-CHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHH
Confidence 3333445678889999999999885 4678888888887653 7899999999987531 11 12233444
Q ss_pred HhcC---CCHHHHHHHHHHHHHhch
Q psy10052 110 YAQD---PVKEVSETCYLALKRIQF 131 (500)
Q Consensus 110 ~l~d---~~~~vr~~a~~aL~~~~~ 131 (500)
++.+ ..+.||.....++..+..
T Consensus 90 ~l~~~~~~~~~vr~kl~~~la~i~~ 114 (971)
T 2x1g_F 90 SIVRFAGGPKIVLNRLCISLGAYIV 114 (971)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4422 358899999999888753
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.11 E-value=0.46 Score=51.78 Aligned_cols=201 Identities=10% Similarity=0.000 Sum_probs=112.0
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHcc-CCCHHHHHHHHHHHHcc--------CC---CccH
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIG-GKTAIQCISEAFA-DESALLKHELAYCLGQM--------KD---SDAN 71 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~-~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~--------~~---~~~~ 71 (500)
..++.++..+-+|+.+ .|..|...|.+.. .+.....+...|. +.++.+|..|+..|... .. ....
T Consensus 16 ~~Le~av~~ly~p~~~--~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir 93 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGV--QQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR 93 (1023)
T ss_dssp HHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChH--HHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 3556666666677764 8999999998864 3445555556664 67899999998888643 11 1122
Q ss_pred HHHHHHhhcc--C-----CCHHHHHHHHHHHHhc-------CChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccc--
Q psy10052 72 DILRQVLEDK--S-----QEPMVRHEAAEALGAI-------GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEE-- 135 (500)
Q Consensus 72 ~~L~~~L~~~--~-----~d~~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-- 135 (500)
..|+..+... + ..+.++...+.+++.+ .+++.++.|...++.+ +.........|..+...-..
T Consensus 94 ~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~ 172 (1023)
T 4hat_C 94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFS 172 (1023)
T ss_dssp HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444321 0 0245666677777765 3568889999988654 44456666666655432100
Q ss_pred -hhh------ccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC---------hhhHHHHH-h
Q psy10052 136 -DKQ------KDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS---------VESTLALT-E 198 (500)
Q Consensus 136 -~~~------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~---------~~~i~~l~-~ 198 (500)
... .+++. +... + +..+..+...+.+.. +..+...++.++..+-. ...++.+. .
T Consensus 173 ~~~l~~~r~~~lk~~-l~~~-----~--~~I~~ll~~iL~~~~-~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~ 243 (1023)
T 4hat_C 173 AEQMTQAKALHLKNS-MSKE-----F--EQIFKLCFQVLEQGA-SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTK 243 (1023)
T ss_dssp TTTSCHHHHHHHHHH-HHHH-----H--HHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTH
T ss_pred hccchHHHHHHHHHH-HHHH-----H--HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHH
Confidence 000 00000 0000 0 222344444554332 22355666776665332 24566666 6
Q ss_pred hccCCCHhHHHHHHHHHhccC
Q psy10052 199 GLSHGSSLYRHEIAFVLGQMQ 219 (500)
Q Consensus 199 ~L~~~~~~vr~~a~~aL~~~~ 219 (500)
.|. ++.+|..++.+|..+.
T Consensus 244 ~L~--~~~~r~~A~ecL~eIv 262 (1023)
T 4hat_C 244 FMT--SPDTRAITLKCLTEVS 262 (1023)
T ss_dssp HHH--SHHHHHHHHHHHHHHH
T ss_pred HcC--CHHHHHHHHHHHHHHH
Confidence 654 5678888888876553
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0067 Score=55.67 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHccCCCHHHHHHHHHHHHcc-CC--------------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-------
Q psy10052 43 ISEAFADESALLKHELAYCLGQM-KD--------------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------- 100 (500)
Q Consensus 43 L~~~l~~~~~~vR~~a~~~L~~~-~~--------------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------- 100 (500)
|-+-|.+.+|..|.+++..|... .. ....+.+...+.|. +..|...++.++..+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds--N~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS--NVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS--SHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44555666666666666555432 00 11223444555555 45566666555544311
Q ss_pred ---------hhhHHHHHH-HhcCCCHHHHHHHHHHHHHh
Q psy10052 101 ---------KSSISILEK-YAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 101 ---------~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~ 129 (500)
...++.|+. ++.|..+.+|..+..++..+
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~ 130 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSL 130 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 012333332 35566666666665555443
No 99
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.91 E-value=0.22 Score=54.78 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=59.1
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHccC-CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------Chh----hHHHHH
Q psy10052 41 QCISEAFADESALLKHELAYCLGQMK-DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------DKS----SISILE 108 (500)
Q Consensus 41 ~~L~~~l~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------~~~----~~~~L~ 108 (500)
..+++.+-+++...|..|-..|.++. .++.+..+..+|..+. ++.+|..|+..|.+.- .++ ....|+
T Consensus 19 ~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~-~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 19 DQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFST-NPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCS-CHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 33444444677778999998888773 4677778888887654 7899999999987631 111 223344
Q ss_pred HHhcC----C-----CHHHHHHHHHHHHHhc
Q psy10052 109 KYAQD----P-----VKEVSETCYLALKRIQ 130 (500)
Q Consensus 109 ~~l~d----~-----~~~vr~~a~~aL~~~~ 130 (500)
.++.+ + ++.||.....+++.+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia 128 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQIL 128 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHH
Confidence 44432 2 4788888888887764
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.90 E-value=0.021 Score=51.35 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=70.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCc-cHHHHHHHhhcCCCCHHHHHHHHHHHhhc----C--CccHH---H
Q psy10052 339 AIQCISEAFADKSALLKHELAYCLGQM---KDSD-ANDILRQVLEDKSQEPMVRHEAAEALGAI----G--DKSSI---S 405 (500)
Q Consensus 339 ~~~~L~~~l~~~~~~vr~~a~~aL~~l---~~~~-~~~~L~~~l~~~~~~~~vR~~a~~aL~~~----~--~~~~~---~ 405 (500)
.+|.|+.-+.|....+|..+-..+..+ ..+. ..+.+.+.+.+. +|.+|...+..++.+ | ....+ +
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~G~~~~~~l~~~~ 210 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSK--NARQRSECLLVIEYYITNAGISPLKSLSVEK 210 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHCSGGGGGGCHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCCccccccchH
Confidence 467777778888888887766555443 2333 678888888777 699999998887764 3 23567 8
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q psy10052 406 ILEKYAQDPVKEVSETCYLALKRIQFVT 433 (500)
Q Consensus 406 ~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 433 (500)
.+.++++|+|..||.+|..++..+=...
T Consensus 211 ~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 211 TVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999998765443
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.026 Score=51.61 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=97.3
Q ss_pred HHHhhcCCcHHHHHHHHHHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC---C
Q psy10052 260 LRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG---G 336 (500)
Q Consensus 260 L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~---~ 336 (500)
|.+-+.+.+|..|..++..+..+-............... .......+...+.|.+ ..+...++.++..+. .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~----~~~~~~~lkk~l~DsN--~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQI----YWRDPTLFAQYITDSN--VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CC----TTSCTHHHHHHTTCSS--HHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHH----HHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHhh
Confidence 556788888888888888776432211110000000000 0011234555665555 445556665554321 1
Q ss_pred -------------hhhHHHHHH-HhcCCCHHHHHHHHHHHhccC---C--CccHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q psy10052 337 -------------KTAIQCISE-AFADKSALLKHELAYCLGQMK---D--SDANDILRQVLEDKSQEPMVRHEAAEALGA 397 (500)
Q Consensus 337 -------------~~~~~~L~~-~l~~~~~~vr~~a~~aL~~l~---~--~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~ 397 (500)
...++.|+. .+.+....+|..++.++-.+. . ...++.+...+.+. +|.+|..++..|.+
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~K--npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKK--LPKLIAAAANCVYE 165 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCS--CHHHHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHH
Confidence 123454543 477888889888777665432 1 23466777777777 79999999888876
Q ss_pred c----CCc---------cHHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q psy10052 398 I----GDK---------SSISILEKYAQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 398 ~----~~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 431 (500)
+ |.. .+++.+..+++|.++.||.+|...+..+-.
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4 321 133456677899999999999999988754
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.01 E-value=0.023 Score=51.07 Aligned_cols=90 Identities=11% Similarity=0.114 Sum_probs=73.1
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHcc----CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhc----C--ChhhH---
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQM----KDSDANDILRQVLEDKSQEPMVRHEAAEALGAI----G--DKSSI--- 104 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~----~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~----~--~~~~~--- 104 (500)
..+|.|++-+.|+...+|..+-..+..+ +.....+.+.+.+++. ++.+|...+..++.+ | ....+
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~G~~~~~~l~~~ 209 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSK--NARQRSECLLVIEYYITNAGISPLKSLSVE 209 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHCSGGGGGGCHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 4678899999999999999877776554 2234678899999888 799999999888764 3 23567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 105 SILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 105 ~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
+.+.+++.|+|..||.+|..++..+
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999765
No 103
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=94.89 E-value=0.37 Score=42.06 Aligned_cols=132 Identities=9% Similarity=-0.046 Sum_probs=75.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhccC---CCccHHHHHHHhhcCCCCHHHHHHHHHHHhhc--CCcc-HHHHHHHhhcCC
Q psy10052 341 QCISEAFADKSALLKHELAYCLGQMK---DSDANDILRQVLEDKSQEPMVRHEAAEALGAI--GDKS-SISILEKYAQDP 414 (500)
Q Consensus 341 ~~L~~~l~~~~~~vr~~a~~aL~~l~---~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~--~~~~-~~~~L~~~l~d~ 414 (500)
..+..++.++..+.|..++..++... .+..++.+...+.+.+ +|.+--..+.+++.+ ..++ ..+.+..++.++
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~~~-nWd~~D~~a~~~~~~~~~~~~~~~~~i~~W~~s~ 136 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQKA-WWDSVDAWRKFFGSWVALHLTELPTIFALFYGAE 136 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTC-SHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTTCS
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHChHHHHHHHHHHHcCC
Confidence 44455666677777877777777553 2233444455554432 677776655445443 1333 556777778888
Q ss_pred CHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC--Chhh
Q psy10052 415 VKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN--SVES 492 (500)
Q Consensus 415 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g--~~~~ 492 (500)
+..+|..|..++ +..... .....+-.+...+. .+++.++|...+++|..+| .++.
T Consensus 137 ~~w~rR~ai~~~--l~~~~~--------------------~~~~~~~~i~~~~~-~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 137 NFWNRRVALNLQ--LMLKEK--------------------TNQDLLKKAIIYDR-TTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp SHHHHHHHHHTT--TTCGGG--------------------CCHHHHHHHHHHTT-TCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHHH--HHHHHC--------------------CCHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHhhCHHH
Confidence 888887777644 221110 01122333333222 5667788888888888887 5555
Q ss_pred HHHh
Q psy10052 493 TLAL 496 (500)
Q Consensus 493 ~~~l 496 (500)
+...
T Consensus 194 v~~f 197 (220)
T 2b6c_A 194 VEEL 197 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 104
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.61 E-value=9.7 Score=41.29 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhccCCC----------------ccHHHHHHHhhc---CCCCHHHHHHHHHHHhhcC-----CccHHH
Q psy10052 350 KSALLKHELAYCLGQMKDS----------------DANDILRQVLED---KSQEPMVRHEAAEALGAIG-----DKSSIS 405 (500)
Q Consensus 350 ~~~~vr~~a~~aL~~l~~~----------------~~~~~L~~~l~~---~~~~~~vR~~a~~aL~~~~-----~~~~~~ 405 (500)
.+|..+.+++.+|+.+++. ..++.|..+++. ...++.||..+++.+|+.. +++.++
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~ 534 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 3577788888887766542 134445555441 0137999999999999864 355555
Q ss_pred HHHHhh------cCCCHhHHHHHHHHHHHhhhhhh
Q psy10052 406 ILEKYA------QDPVKEVSETCYLALKRIQFVTE 434 (500)
Q Consensus 406 ~L~~~l------~d~~~~vr~~A~~aL~~l~~~~~ 434 (500)
.+..++ .++++.||.+|+.++.++-....
T Consensus 535 ~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 554443 36788999999999999866543
No 105
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=93.26 E-value=0.78 Score=40.35 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcC---CcchHHHHHHHcc-CCCHHHHHHH-HHHHHcc--CCCc-cHHHHHHHhhccCCCHHHHHHHHHH
Q psy10052 23 ERFRALFTLKNIG---GKTAIQCISEAFA-DESALLKHEL-AYCLGQM--KDSD-ANDILRQVLEDKSQEPMVRHEAAEA 94 (500)
Q Consensus 23 ~R~~A~~~L~~~~---~~~~~~~L~~~l~-~~~~~vR~~a-~~~L~~~--~~~~-~~~~L~~~L~~~~~d~~vr~~a~~a 94 (500)
.|..|+..+.... .+..++.+...+. .+++.+--.. ...++.+ .++. ..+.+.+...++ ++.+|+.|+..
T Consensus 77 ~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~~~~l~~W~~s~--~~w~rR~ai~~ 154 (232)
T 3jxy_A 77 FQAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASD--NIWLQRAAILF 154 (232)
T ss_dssp HHHHHHHHHHHTGGGCCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGGGGTHHHHHHSS--CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 6666666665431 2334444544443 4445443222 2222222 1222 445556666665 56666666654
Q ss_pred HHhcC---Ch-hhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 95 LGAIG---DK-SSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 95 L~~~~---~~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
+-... ++ ...+.+..++.|++..|+.+..++|..++.
T Consensus 155 ~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 155 QLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp TTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 42221 11 122334445566667777777777776653
No 106
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=92.47 E-value=1.7 Score=37.78 Aligned_cols=121 Identities=6% Similarity=-0.091 Sum_probs=78.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcC---CcchHHHHHHHcc-CCCHHHHHHHHHHHHcc--CCCc-cHHHHHHHhhc
Q psy10052 8 LLIGQVLKDSSKPLKERFRALFTLKNIG---GKTAIQCISEAFA-DESALLKHELAYCLGQM--KDSD-ANDILRQVLED 80 (500)
Q Consensus 8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~---~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~--~~~~-~~~~L~~~L~~ 80 (500)
..+.++..++..+ .|+.|...|.... .++.++.+-..+. -+++.+--..+.+++.+ ..+. ..+.+.+-..+
T Consensus 58 ~~~~~L~~s~~~E--~r~la~~~l~~~~~~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~~~~~i~~W~~s 135 (220)
T 2b6c_A 58 QEIEAYYQKTERE--YQYVAIDLALQNVQRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYGA 135 (220)
T ss_dssp HHHHHHHTSSSHH--HHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTTC
T ss_pred HHHHHHHcCchhH--HHHHHHHHHHHHHhhCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHHHHHHHHHHHcC
Confidence 3444455666654 9999999998654 3344444455555 55666655444545543 2333 55667788888
Q ss_pred cCCCHHHHHHHHHHHHhcC---Chh-hHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 81 KSQEPMVRHEAAEALGAIG---DKS-SISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 81 ~~~d~~vr~~a~~aL~~~~---~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
+ +..+|+.|+..+-... +++ ..+.+..++.|++..|+.+..++|..++..
T Consensus 136 ~--~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 136 E--NFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp S--SHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred C--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 7 7999999988553222 222 334344477999999999999999998853
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.26 E-value=0.46 Score=49.45 Aligned_cols=126 Identities=15% Similarity=0.063 Sum_probs=82.2
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCc----------chHHHH-HHHccCCCHHHHHHHHHHHHccCC-------
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGK----------TAIQCI-SEAFADESALLKHELAYCLGQMKD------- 67 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~----------~~~~~L-~~~l~~~~~~vR~~a~~~L~~~~~------- 67 (500)
.+..+++.|+++++. .|..|...|.++... ..+..+ ..+|.|++..||.+|+++|+.+..
T Consensus 35 ~i~Pll~~L~S~~~~--~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPDAK--SRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSCCS--HHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCCHH--HHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345567789999998 999999999998632 345544 456789999999999999987731
Q ss_pred -----CccHHHHHHHhhccC------------CCH-------HHHHH---HHHHHHhcC--------ChhhHHHHHHHhc
Q psy10052 68 -----SDANDILRQVLEDKS------------QEP-------MVRHE---AAEALGAIG--------DKSSISILEKYAQ 112 (500)
Q Consensus 68 -----~~~~~~L~~~L~~~~------------~d~-------~vr~~---a~~aL~~~~--------~~~~~~~L~~~l~ 112 (500)
...++.|..+|+... ... .+-.. .+++|+... ..+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 235667777664310 001 11112 233333221 2345677777763
Q ss_pred C---CCHHHHHHHHHHHHHhchhc
Q psy10052 113 D---PVKEVSETCYLALKRIQFVT 133 (500)
Q Consensus 113 d---~~~~vr~~a~~aL~~~~~~~ 133 (500)
+ ....++..|.++|..+..++
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCcHHHHHHHHHHHHHHhccC
Confidence 3 23679999999999887654
No 108
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.44 E-value=0.54 Score=51.25 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHc----c--CCCHHHHHHHHHHHHccCC-----------CccHHHHHHHhhc-----cCC
Q psy10052 26 RALFTLKNIGGKTAIQCISEAF----A--DESALLKHELAYCLGQMKD-----------SDANDILRQVLED-----KSQ 83 (500)
Q Consensus 26 ~A~~~L~~~~~~~~~~~L~~~l----~--~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~L~~-----~~~ 83 (500)
..+..+........++.+...+ . +.+|..|..++|++|.+.. +..++.|..++.+ +
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~-- 512 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDN-- 512 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHH--
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcc--
Confidence 3444454455455555555444 3 3689999999999999743 1345667777763 2
Q ss_pred CHHHHHHHHHHHHhcCC-----hhh----HHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 84 EPMVRHEAAEALGAIGD-----KSS----ISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 84 d~~vr~~a~~aL~~~~~-----~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
.+.||..+++.+|++.. +.. +..|.+.+.++++.|+.+|.+++.++...
T Consensus 513 k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 34566778899999753 333 44455566888899999999999998864
No 109
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=90.69 E-value=8 Score=33.76 Aligned_cols=166 Identities=10% Similarity=0.057 Sum_probs=76.8
Q ss_pred HHHHhcCCcchHHHHHHHccCC-------CHHHHHHHHHHHHccCCCc--cH-HHHHHHhhccCCCHHHHHHHHHHHHhc
Q psy10052 29 FTLKNIGGKTAIQCISEAFADE-------SALLKHELAYCLGQMKDSD--AN-DILRQVLEDKSQEPMVRHEAAEALGAI 98 (500)
Q Consensus 29 ~~L~~~~~~~~~~~L~~~l~~~-------~~~vR~~a~~~L~~~~~~~--~~-~~L~~~L~~~~~d~~vr~~a~~aL~~~ 98 (500)
..|...++++........+++. .|.+|.-|-......+.+. -. +.+..+..++ .-+.|..|+..+...
T Consensus 11 ~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~~--~~E~r~~ai~~l~~~ 88 (232)
T 3jxy_A 11 EHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLP--EREFQAAALDIMQKY 88 (232)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTSS--BHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcCc--HHHHHHHHHHHHHHH
Confidence 3445555555555555555432 3555554444444443221 12 3444555544 456777777777643
Q ss_pred C---ChhhHHHHHHHhc-CCCHHHHHHH-HHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcC
Q psy10052 99 G---DKSSISILEKYAQ-DPVKEVSETC-YLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED 173 (500)
Q Consensus 99 ~---~~~~~~~L~~~l~-d~~~~vr~~a-~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~ 173 (500)
. .++.++.+..++. .++..+.... ...++.+-.... +...+.+.+...+ ++
T Consensus 89 ~k~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p----------------------~~~~~~l~~W~~s--~~ 144 (232)
T 3jxy_A 89 KKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHP----------------------ELISAYIPKWIAS--DN 144 (232)
T ss_dssp GGGCCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCG----------------------GGGGGTHHHHHHS--SC
T ss_pred HHhCCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCH----------------------HHHHHHHHHHhcC--Cc
Confidence 2 3344555555553 3445443332 233333321110 1123445555533 35
Q ss_pred HHHHHHHHHHHHcCC---Ch-hhHHHHHhhccCCCHhHHHHHHHHHhccCC
Q psy10052 174 LFMRYKAMFKLRDIN---SV-ESTLALTEGLSHGSSLYRHEIAFVLGQMQN 220 (500)
Q Consensus 174 ~~~r~~A~~~L~~~~---~~-~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~ 220 (500)
.++|..|+..+.... +. .....+...+.|+...|+.++.++|..++.
T Consensus 145 ~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 145 IWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp HHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 666666655443221 11 122333344455566666666666655553
No 110
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.47 E-value=1.7 Score=38.73 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=45.8
Q ss_pred ccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGD------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 69 ~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
+.++.++++..+. +..+|++.+..+++.+. ...++.|..+++|+++.|...++.+.+.+
T Consensus 53 ~~l~~il~~~~~~--~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 53 EFLESVLSLAHDS--NMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHGGGGCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455666655565 78999999999987653 24677888889999999999999999875
No 111
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.29 E-value=2.9 Score=39.54 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=48.6
Q ss_pred CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 68 SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 68 ~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
++.++.++++-.+. +..||++.+..+++.+. ...++.|..+++|+++.|...++.+.+.+
T Consensus 62 ~~fl~~il~f~~d~--~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADK--SIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35678888877777 78999999999987653 24667788888999999999999998875
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.32 E-value=7.7 Score=37.54 Aligned_cols=104 Identities=19% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcC------ChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCcc----HHHHHHHhhcCCCCHHHHHHH
Q psy10052 322 KERFRALFTLKNIG------GKTAIQCISEAFADKSALLKHELAYCLGQMKDSDA----NDILRQVLEDKSQEPMVRHEA 391 (500)
Q Consensus 322 ~~r~~a~~~L~~~~------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~----~~~L~~~l~~~~~~~~vR~~a 391 (500)
.....|...+.+.- .+.++..++.+++|+|..||..|++.|..++.... ...|.++|... ++.-....
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtd--d~~E~~~V 120 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTD--DSAEFNLV 120 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhcc--chHHHHHH
Confidence 34455555454332 15688899999999999999999999999987554 55566666643 55555544
Q ss_pred HHHH---hhcCCccHHHHHHHhhcCCCHhHHHHHHHHHH
Q psy10052 392 AEAL---GAIGDKSSISILEKYAQDPVKEVSETCYLALK 427 (500)
Q Consensus 392 ~~aL---~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 427 (500)
-.+| -++.....+..|-..+...+..+|..+..=|.
T Consensus 121 ~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 121 NNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 4444 34444455555555554457888877655553
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.87 E-value=3 Score=40.32 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHccCC------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh----hhHHHHHHHhcCCCHHH
Q psy10052 49 DESALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK----SSISILEKYAQDPVKEV 118 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~----~~~~~L~~~l~d~~~~v 118 (500)
.+++..+.-|..-+.++-. ..++..++.+.+|+ |..||..|++.|..++.. .....|.++|+.+++.-
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDe--d~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDE--DVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcc--cHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHH
Confidence 3346666666666655411 34566666666666 666777777777666542 33455666666666554
Q ss_pred HHHHHHHHHH
Q psy10052 119 SETCYLALKR 128 (500)
Q Consensus 119 r~~a~~aL~~ 128 (500)
....-.+|..
T Consensus 117 ~~~V~~sL~s 126 (507)
T 3u0r_A 117 FNLVNNALLS 126 (507)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.87 E-value=0.7 Score=48.06 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=37.0
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCCh----------hhHH-HHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 74 LRQVLEDKSQEPMVRHEAAEALGAIGDK----------SSIS-ILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 74 L~~~L~~~~~d~~vr~~a~~aL~~~~~~----------~~~~-~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
+++.|+++ ++..|.+|+.+|+.+... +.+. .|..+|.|++..||..|+.+|+++...
T Consensus 39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44445555 566666666666665431 2333 455678888888888888888887643
No 115
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.37 E-value=21 Score=39.66 Aligned_cols=124 Identities=11% Similarity=0.120 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCc-chHHHHHHHc--cCCCHHHHHHHHHHHHcc-----C--CC----ccHH
Q psy10052 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGGK-TAIQCISEAF--ADESALLKHELAYCLGQM-----K--DS----DAND 72 (500)
Q Consensus 7 ~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~-~~~~~L~~~l--~~~~~~vR~~a~~~L~~~-----~--~~----~~~~ 72 (500)
+..++..+-+|+.+...|..|...|.+.... .....+...| .+.++.+|..|+..|... . +. ....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~ 92 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN 92 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 3344444456644434799999999887533 2555555544 366899999998887743 1 11 2235
Q ss_pred HHHHHhhccC-----CCHHHHHHHHHHHHhc-------CChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 73 ILRQVLEDKS-----QEPMVRHEAAEALGAI-------GDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 73 ~L~~~L~~~~-----~d~~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
.|+..+.... ..+.||...+.++..+ .+++.++.|..+++. ++..+..+...|..+..
T Consensus 93 ~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 93 SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 5566655320 2588999988888775 367889999998876 55667788888888764
No 116
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=84.30 E-value=11 Score=41.20 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=74.8
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHcc-CCCHHHHHHHHHHHHcc--------CC---CccH
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIG-GKTAIQCISEAFA-DESALLKHELAYCLGQM--------KD---SDAN 71 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~-~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~--------~~---~~~~ 71 (500)
..++.++..+-+++.+ .|..|...|.+.. .+.+...+...|. +.++.+|..|+..|... .. ....
T Consensus 28 ~~Le~lv~~ly~p~~~--~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR 105 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGA--QQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK 105 (1073)
T ss_dssp HHHHHHHHTTTCSSHH--HHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHH--HHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHH
Confidence 3456666666677654 8899999998875 3455555556665 56889998888887653 11 1123
Q ss_pred HHHHHHhhc----c---CCCHHHHHHHHHHHHhc-------CChhhHHHHHHHhcCCCHHHHHHHHHHHHHhch
Q psy10052 72 DILRQVLED----K---SQEPMVRHEAAEALGAI-------GDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131 (500)
Q Consensus 72 ~~L~~~L~~----~---~~d~~vr~~a~~aL~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 131 (500)
..|+..+.. + ..++.++...+.+++.+ .+++.++.++..++.. +.........|..+..
T Consensus 106 ~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 106 KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTS-ESLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 444444432 1 11466777777777664 3567788888877543 3445555566655543
No 117
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.97 E-value=37 Score=37.01 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=62.1
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHccC-CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCC-------h----hhHH
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQMK-DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGD-------K----SSIS 105 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~-------~----~~~~ 105 (500)
..++.++..+-++++..|..|-..|.++. +++++..+..+|..+. ++.+|..|+..|...-. + ..-.
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~-~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~ 106 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQ-NMNTKYYGLQILENVIKTRWKILPRNQCEGIKK 106 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CC-SHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 35666777776788889999999999985 5778888888887654 79999999999876311 1 1122
Q ss_pred HHHHHh----cC-----CCHHHHHHHHHHHHHhc
Q psy10052 106 ILEKYA----QD-----PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 106 ~L~~~l----~d-----~~~~vr~~a~~aL~~~~ 130 (500)
.|+.++ .+ .++.++.....+++.+.
T Consensus 107 ~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~ 140 (1073)
T 3gjx_A 107 YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQIL 140 (1073)
T ss_dssp HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCccccccchHHHHHHHHHHHHHH
Confidence 333333 23 35778877777777764
No 118
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=82.79 E-value=4.9 Score=31.41 Aligned_cols=101 Identities=12% Similarity=-0.030 Sum_probs=72.4
Q ss_pred HHHHHHhcCCc---chHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh--
Q psy10052 27 ALFTLKNIGGK---TAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK-- 101 (500)
Q Consensus 27 A~~~L~~~~~~---~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~-- 101 (500)
|++.|..++.+ ..++.|+..|+|-|+.+-...+..|..++ ...++.+.+.|... |..=..+.+..+...-..
T Consensus 17 a~~~L~~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-~~l~p~I~~vl~s~--D~~W~ywil~~lv~~~~~~~ 93 (134)
T 3ut4_A 17 TIDQLCKLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-SIAMPHILTILQGN--DIMWKYWVIKLMIPYLIYPN 93 (134)
T ss_dssp THHHHTTCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-HHHHHHHHHHHHSS--CHHHHHHHHHHHGGGCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-HhhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCHHH
Confidence 56667777654 35667777888999999999999999886 47789999999776 666666777666543332
Q ss_pred --hhHHHHHHHhcCC-----CHHHHHHHHHHHHHhc
Q psy10052 102 --SSISILEKYAQDP-----VKEVSETCYLALKRIQ 130 (500)
Q Consensus 102 --~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~ 130 (500)
...+.|.++...+ ...|...|-.-|.++.
T Consensus 94 ~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~ 129 (134)
T 3ut4_A 94 KQLVKSELERLSSLEIINEDIREIVNLSKDYLHFYY 129 (134)
T ss_dssp HHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHc
Confidence 3445566666554 3678888888887764
No 119
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=78.20 E-value=14 Score=28.80 Aligned_cols=92 Identities=11% Similarity=-0.074 Sum_probs=66.7
Q ss_pred HhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCC----CccHHHHHHHhhc
Q psy10052 5 EKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKD----SDANDILRQVLED 80 (500)
Q Consensus 5 ~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~----~~~~~~L~~~L~~ 80 (500)
.-++.|...|+|.|.+ +....+..|..++ +..++.+.+.|.++|..-....+..+...-+ ....+.|..+...
T Consensus 31 p~lp~LL~WLQD~NWP--vA~~i~~~L~~~~-~~l~p~I~~vl~s~D~~W~ywil~~lv~~~~~~~~~~l~~eL~rl~~~ 107 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWP--IAKDILPVVVLHQ-SIAMPHILTILQGNDIMWKYWVIKLMIPYLIYPNKQLVKSELERLSSL 107 (134)
T ss_dssp HHHHHHHGGGSCTTST--THHHHHHHHHHTH-HHHHHHHHHHHHSSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCc--cHHHHHHHHHHcc-HhhHHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 3468899999999998 8889999999988 4699999999998887777777766554323 2334566666665
Q ss_pred cC---CCHHHHHHHHHHHHhcC
Q psy10052 81 KS---QEPMVRHEAAEALGAIG 99 (500)
Q Consensus 81 ~~---~d~~vr~~a~~aL~~~~ 99 (500)
+. ...+|...|-+.|..+.
T Consensus 108 pt~~E~~eev~e~A~~iL~~~~ 129 (134)
T 3ut4_A 108 EIINEDIREIVNLSKDYLHFYY 129 (134)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHHHHHHHHc
Confidence 42 14567777777776653
No 120
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=70.59 E-value=25 Score=32.38 Aligned_cols=120 Identities=21% Similarity=0.190 Sum_probs=82.4
Q ss_pred hHhHHHHHHhhcCCCCCHHHHHHHHHHHHh-cC-Cc---------chHHHHHHHccCCCHHHHHHHHHHHHccC------
Q psy10052 4 EEKILLIGQVLKDSSKPLKERFRALFTLKN-IG-GK---------TAIQCISEAFADESALLKHELAYCLGQMK------ 66 (500)
Q Consensus 4 ~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~-~~-~~---------~~~~~L~~~l~~~~~~vR~~a~~~L~~~~------ 66 (500)
...+..+++.|.+.+.+ .+..++..|.. +. +. .-+..|++...+.+.....+++.+|+++-
T Consensus 117 s~ra~~iiekL~~~~~~--~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 117 SVRVNAILEKLYSSSGP--ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc
Confidence 35667778888877665 78888888887 32 22 34566777778889999999999988763
Q ss_pred -----CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCCh---------hh------------HHHHHHHhc---CCCHH
Q psy10052 67 -----DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SS------------ISILEKYAQ---DPVKE 117 (500)
Q Consensus 67 -----~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~---------~~------------~~~L~~~l~---d~~~~ 117 (500)
++..+..|..++... +..|-+.|...|..+... .+ .+.|+.+|+ ..|..
T Consensus 195 ~gvvs~~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCASL--SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred cchhCCHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 344677777788755 788888888887665321 01 345667776 56677
Q ss_pred HHHHHHHHHH
Q psy10052 118 VSETCYLALK 127 (500)
Q Consensus 118 vr~~a~~aL~ 127 (500)
++..|+.-+-
T Consensus 273 lq~~amtLIN 282 (339)
T 3dad_A 273 LLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=66.84 E-value=12 Score=31.51 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcCChhhHHHh
Q psy10052 417 EVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLAL 496 (500)
Q Consensus 417 ~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g~~~~~~~l 496 (500)
.+|..|+.-|+.+-..-... + +. -.+..+..|.+.+.|++.+....+.|..+|..+|. ++|..+
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~--------y------~~-L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~-~~vr~~ 168 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRS--------Y------KT-LAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK-NVVNTV 168 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--------S------TT-HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH-HHHHTH
T ss_pred HHHHHHHHHHHHHHHHhCcc--------C------ch-HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH-HHHHHh
Confidence 79999999999986543211 1 01 12578899999999999999999999999999998 777654
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=66.56 E-value=36 Score=32.08 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=59.8
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHhc----C---CcchHHHHHHHccCCCHHHHHHHHHHHHccCC------CccHH
Q psy10052 6 KILLIGQVLKDSSKPLKERFRALFTLKNI----G---GKTAIQCISEAFADESALLKHELAYCLGQMKD------SDAND 72 (500)
Q Consensus 6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~----~---~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~------~~~~~ 72 (500)
-++.|-+.-.+++. .+...++.+.++ . -++.++.++++-.+++..+|...+.-|.+... ..+++
T Consensus 27 v~~lln~A~~~~~~---~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~ 103 (386)
T 3o2t_A 27 VVDLLNQAALITND---SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIA 103 (386)
T ss_dssp HHHHHHHHHHCCST---HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHhhhccChH---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444343443 566666655553 1 35688888888788899999988888776632 34567
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHhc
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGAI 98 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~~ 98 (500)
.|..+|.|+ |+.|...++.+.+.+
T Consensus 104 ~L~~LL~d~--d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 104 NLNMLLRDE--NVNVVKKAILTMTQL 127 (386)
T ss_dssp HHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 788888877 788988888887764
No 123
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=64.52 E-value=61 Score=28.59 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhc----C---CcchHHHHHHHccCCCHHHHHHHHHHHHccCC------CccHHHHHHHhhccCCCHHHHH
Q psy10052 23 ERFRALFTLKNI----G---GKTAIQCISEAFADESALLKHELAYCLGQMKD------SDANDILRQVLEDKSQEPMVRH 89 (500)
Q Consensus 23 ~R~~A~~~L~~~----~---~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~L~~~~~d~~vr~ 89 (500)
.+...+....+. . -++.++.++..-.+++..+|...+.-+.+... ...++.|..++.|+ |+.|.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~--d~~V~K 108 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDN--SAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHH
Confidence 555555555552 1 24567777776567888888887777766531 34567777778776 788888
Q ss_pred HHHHHHHhcC---------Ch--------------hhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 90 EAAEALGAIG---------DK--------------SSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 90 ~a~~aL~~~~---------~~--------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
.++.+.+.+- .+ ..-..++....+.+..||..|+.-+.++
T Consensus 109 ~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 109 RVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 8888776531 00 1122344455666677777777665553
No 124
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=63.50 E-value=74 Score=27.56 Aligned_cols=117 Identities=8% Similarity=0.028 Sum_probs=72.3
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHcc-CCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHH
Q psy10052 9 LIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFA-DESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMV 87 (500)
Q Consensus 9 ~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~v 87 (500)
...++..++..+ .|+.|...+.... .....+-..+. -+++.+--..+-.+.. ..+...+.+.+...++ +..+
T Consensus 52 la~~Lw~~~~~E--~r~lA~li~~~~~--~~~~~~~~~v~~~~nWd~~D~~~~~l~~-~~~~~~~~~~~W~~s~--~~w~ 124 (235)
T 1t06_A 52 LAEELYATGNYD--AMYFAGIIADPKA--MSESDFDRWIDGAYFYMLSDYVVAVTLS-ESNIAQDVADKWIASG--DELK 124 (235)
T ss_dssp HHHHHHHTCCHH--HHHHHHHHCCGGG--CCHHHHHHHHHTCCSHHHHHHTHHHHHT-TSSSHHHHHHHHHHSC--CHHH
T ss_pred HHHHHHcCCcHH--HHHHHHHhhCHHh--cCHHHHHHHHhCCCcHHHHHHHHHHHHh-cCchHHHHHHHHHcCc--HHHH
Confidence 345566777664 8888886654321 12233333343 3345544433333321 2355667777777777 8999
Q ss_pred HHHHHH----HHHhcC----Chh----hHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 88 RHEAAE----ALGAIG----DKS----SISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 88 r~~a~~----aL~~~~----~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
|+.++- .|..+. +.. .++.+...+.|++..|+.+..++|..++..
T Consensus 125 rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 125 MSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 999988 656533 222 333444467899999999999999998853
No 125
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=62.60 E-value=77 Score=27.45 Aligned_cols=133 Identities=6% Similarity=-0.080 Sum_probs=79.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHHHHHHHhhcCCCHhHHH
Q psy10052 341 QCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSE 420 (500)
Q Consensus 341 ~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~ 420 (500)
+....++.++..+.|..++..+.... -....+-..+.+.+ +|.+--..+..+.. ..+...+.+..++.+++..+|.
T Consensus 51 ~la~~Lw~~~~~E~r~lA~li~~~~~--~~~~~~~~~v~~~~-nWd~~D~~~~~l~~-~~~~~~~~~~~W~~s~~~w~rR 126 (235)
T 1t06_A 51 ELAEELYATGNYDAMYFAGIIADPKA--MSESDFDRWIDGAY-FYMLSDYVVAVTLS-ESNIAQDVADKWIASGDELKMS 126 (235)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCCGGG--CCHHHHHHHHHTCC-SHHHHHHTHHHHHT-TSSSHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHhhCHHh--cCHHHHHHHHhCCC-cHHHHHHHHHHHHh-cCchHHHHHHHHHcCcHHHHHH
Confidence 34566777777777777774443211 12333444455443 78888766555532 3466778888999999999998
Q ss_pred HHHH----HHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC--ChhhHH
Q psy10052 421 TCYL----ALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN--SVESTL 494 (500)
Q Consensus 421 ~A~~----aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g--~~~~~~ 494 (500)
.+.. -|..+...... .. .....++.+...+ .+++++++.+..++|..+| .++.+.
T Consensus 127 ~ai~~q~~ll~~~~~k~~~-~~----------------~~~~~l~~i~~~l--~~~~~~v~kAi~W~Lr~~gk~~~~~~~ 187 (235)
T 1t06_A 127 AGWSCYCWLLGNRKDNAFS-ES----------------KISDMLEMVKDTI--HHSPERTKSAMNNFLNTVAISYVPLHE 187 (235)
T ss_dssp HHHHHHHHHHHHSCGGGSC-HH----------------HHHHHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHhhccccCcC-hh----------------hHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHhhCHHHHH
Confidence 8887 44442211000 00 0112333333344 4667899999999999998 555444
Q ss_pred Hh
Q psy10052 495 AL 496 (500)
Q Consensus 495 ~l 496 (500)
..
T Consensus 188 ~a 189 (235)
T 1t06_A 188 KA 189 (235)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 126
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=62.44 E-value=5.2 Score=30.74 Aligned_cols=61 Identities=16% Similarity=0.044 Sum_probs=43.8
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q psy10052 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFV 432 (500)
Q Consensus 370 ~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 432 (500)
.-..|..+++++ ++.||..|+...-.+..+++.+.|..+...+.-.+...|-.+|.++...
T Consensus 58 ~R~aLl~Ll~H~--n~~VRl~AA~~~L~~~p~~A~~vLe~ia~~~~~~~~f~A~m~L~~we~G 118 (123)
T 2i9c_A 58 QRTALLSLFEYP--NMQVRLQAAKLTLAVAPVKAREQLEAIVSSKWFPQAGDAGMCLDLLDDG 118 (123)
T ss_dssp GGGGGGGGGGSS--CHHHHHHHHHTTTTTCHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC--CccHHHHHHHHHHhhChHHHHHHHHHHHhCCCCCccccHHHHHHHHHcC
Confidence 334567777776 6888887777666666677788888777766656777788888887653
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=59.63 E-value=50 Score=26.81 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=18.2
Q ss_pred hhhHHHHHHHhcC-CCHHHHHHHHHHHHHhc
Q psy10052 101 KSSISILEKYAQD-PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 101 ~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~ 130 (500)
.+.+..|++++.. .++.|+..+...+....
T Consensus 94 ~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 94 RDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4555556666543 55677777777665544
No 128
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.13 E-value=54 Score=28.27 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=13.0
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHH
Q psy10052 38 TAIQCISEAFADESALLKHELAYCL 62 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L 62 (500)
+++..|.+-|.++++.+...|+..|
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LL 69 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVM 69 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455555555555555555555444
No 129
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=56.67 E-value=2.4e+02 Score=31.25 Aligned_cols=48 Identities=6% Similarity=-0.109 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHc
Q psy10052 115 VKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRD 186 (500)
Q Consensus 115 ~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~ 186 (500)
+..+|..|-..|.++... +.....+...|.+.+.+..+|..|+..|.+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~------------------------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~ 73 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK------------------------CPICVPCGLRLAEKTQVAIVRHFGLQILEH 73 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH------------------------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC------------------------chHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 667788888777776532 113444555554445567788888777764
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.32 E-value=66 Score=25.26 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHccC--CCccHHHHHHHhhccCCCHHHHHHHHHHHHh------------cCChhhHHHHHHHhcCC
Q psy10052 49 DESALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGA------------IGDKSSISILEKYAQDP 114 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~~--~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~------------~~~~~~~~~L~~~l~d~ 114 (500)
++|+..-...+..+..-. ..+++..|.+-|.+. ++.+...|+..|.. ++..+.+..|.++++..
T Consensus 20 ~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~ 97 (140)
T 3ldz_A 20 AEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG 97 (140)
T ss_dssp SCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence 344444444444443321 123444555555555 45555555554432 23445666677777667
Q ss_pred CHHHHHHHHHHHHHhc
Q psy10052 115 VKEVSETCYLALKRIQ 130 (500)
Q Consensus 115 ~~~vr~~a~~aL~~~~ 130 (500)
++.|+..+...+....
T Consensus 98 ~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 98 HPKVCEKLKALMVEWT 113 (140)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888776544
No 131
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=54.93 E-value=1.3e+02 Score=27.64 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=61.2
Q ss_pred hHHHHHHHccCCCHHHHHHHHHHHHc-cC-C---------CccHHHHHHHhhccCCCHHHHHHHHHHHHhcC--------
Q psy10052 39 AIQCISEAFADESALLKHELAYCLGQ-MK-D---------SDANDILRQVLEDKSQEPMVRHEAAEALGAIG-------- 99 (500)
Q Consensus 39 ~~~~L~~~l~~~~~~vR~~a~~~L~~-~~-~---------~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~-------- 99 (500)
.+..+++.|.+++...++.+++.|.+ +. + .+.+..|+....+. +...+.+++++|+.+=
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccc
Confidence 34556666767777778888888887 42 2 23466777777776 6788888888887752
Q ss_pred ---ChhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 100 ---DKSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 100 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
.+..+..|..++...++.|.+.|...|-.+.
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V 230 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFV 230 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 3345666777777777777776666665554
No 132
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=52.46 E-value=1e+02 Score=25.79 Aligned_cols=137 Identities=14% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHcc-CCCccHHHHHHHhhcc----CCCHHHHHHH---HHHHHhcCC-------hhhH
Q psy10052 40 IQCISEAFADESALLKHELAYCLGQM-KDSDANDILRQVLEDK----SQEPMVRHEA---AEALGAIGD-------KSSI 104 (500)
Q Consensus 40 ~~~L~~~l~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~L~~~----~~d~~vr~~a---~~aL~~~~~-------~~~~ 104 (500)
...+.+.+.+ ..|..|...|..- |-...+|.++..+.+. -.|..+-... +++|-.-.. ...+
T Consensus 13 f~~It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~Li 89 (196)
T 4atg_A 13 FDKILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQIL 89 (196)
T ss_dssp HHHHHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHH
T ss_pred HHHHHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 3444444444 4577777777755 3355566666655543 0133332222 333322111 1456
Q ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHH
Q psy10052 105 SILEKYAQD---PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 181 (500)
Q Consensus 105 ~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~ 181 (500)
|.++.++-. ....+|..|+..|+.+.+..... |... .+.....+.+.+.|++.+....+.|+
T Consensus 90 psvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~--------y~~L-------~~RI~~tl~k~l~dp~~~l~t~YGAi 154 (196)
T 4atg_A 90 PSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS--------YKTL-------APRVLKTLKGVWMDPNRSEDSQYGAL 154 (196)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT--------STTH-------HHHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc--------CchH-------HHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 777776611 11279999999999987643210 1000 03456777778878888888899999
Q ss_pred HHHHcCCChhhHHH
Q psy10052 182 FKLRDINSVESTLA 195 (500)
Q Consensus 182 ~~L~~~~~~~~i~~ 195 (500)
..|..+|. +++..
T Consensus 155 ~GL~~lG~-~~vr~ 167 (196)
T 4atg_A 155 YCLSILSK-NVVNT 167 (196)
T ss_dssp HHHHHHCH-HHHHT
T ss_pred HHHHHhHH-HHHHH
Confidence 99988887 44433
No 133
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=51.56 E-value=21 Score=35.93 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=54.8
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhcC
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQD 113 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~d 113 (500)
+.+++.++....=.++....+|.+.|..+.......+ +++|...-.|+.||..|++.|....+.+ .++.|++.|+-
T Consensus 62 ~~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dA-LELL~~~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQALKy 140 (614)
T 3ls8_A 62 EKALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDS-LELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKY 140 (614)
T ss_dssp GGGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHH-GGGGSTTCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHGGG
T ss_pred hhHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHH-HHhCcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhc
Confidence 4566766666554556666678888988876555444 5666554338999999999999988765 45677777765
Q ss_pred CC
Q psy10052 114 PV 115 (500)
Q Consensus 114 ~~ 115 (500)
+.
T Consensus 141 E~ 142 (614)
T 3ls8_A 141 EN 142 (614)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 134
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=50.69 E-value=21 Score=27.40 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=44.5
Q ss_pred cHHHHHHHhhccCCCHHHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy10052 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 70 ~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 130 (500)
....|..+|+++ ++.||.+|+-..=.+....+.+.|..+.+.+.-.+...|-.+|.++.
T Consensus 58 ~R~aLl~Ll~H~--n~~VRl~AA~~~L~~~p~~A~~vLe~ia~~~~~~~~f~A~m~L~~we 116 (123)
T 2i9c_A 58 QRTALLSLFEYP--NMQVRLQAAKLTLAVAPVKAREQLEAIVSSKWFPQAGDAGMCLDLLD 116 (123)
T ss_dssp GGGGGGGGGGSS--CHHHHHHHHHTTTTTCHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CccHHHHHHHHHHhhChHHHHHHHHHHHhCCCCCccccHHHHHHHHH
Confidence 345688999998 79999998876666666678888877777666557777888887764
No 135
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=48.88 E-value=2.7e+02 Score=29.59 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhcc-CCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCCch
Q psy10052 177 RYKAMFKLRDINSVESTLALTEGLS-HGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPE 255 (500)
Q Consensus 177 r~~A~~~L~~~~~~~~i~~l~~~L~-~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~ 255 (500)
|..++..|...+.++........+. ..+-.-+..|+.++.....+..-..|..+...-..++-|--.-...-+....++
T Consensus 702 ~n~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~~~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~ 781 (891)
T 3b34_A 702 RNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAAN 781 (891)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhCCChHHHHHHHHHHhccCcchHHHHHHHHHHHhccCcHHHHHHHHHHhCCCCcc
Confidence 4455555665443333333443333 356667778888887665443333333333322234555433333334445567
Q ss_pred HHHHHHHhhcCC
Q psy10052 256 CYDVLRKYLSDE 267 (500)
Q Consensus 256 ~~~~L~~~l~~~ 267 (500)
.++.+.++++++
T Consensus 782 ~~~~v~~l~~h~ 793 (891)
T 3b34_A 782 VLETVRGLLQHR 793 (891)
T ss_dssp HHHHHHHHTTCT
T ss_pred HHHHHHHHhcCC
Confidence 888888888887
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=48.81 E-value=1.1e+02 Score=24.82 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=59.4
Q ss_pred hHhHHHHHHhhcCC---CCCHHHHHHHHHHHHhc--CCcchHHHHHHHccCCCHHHHHHHHHHHHcc------------C
Q psy10052 4 EEKILLIGQVLKDS---SKPLKERFRALFTLKNI--GGKTAIQCISEAFADESALLKHELAYCLGQM------------K 66 (500)
Q Consensus 4 ~~~~~~L~~~L~~~---~~~~~~R~~A~~~L~~~--~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~------------~ 66 (500)
......+++-..++ +.+|..=..-...+..- +...++..|.+-|++.++.+...|+..|... .
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~eva 92 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVC 92 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHT
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34556677666653 34453333333333332 2346788888889999999999988887654 2
Q ss_pred CCccHHHHHHHhhccCCCHHHHHHHHHHHHh
Q psy10052 67 DSDANDILRQVLEDKSQEPMVRHEAAEALGA 97 (500)
Q Consensus 67 ~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~ 97 (500)
..+....|+.++.... ++.|+..+.+.+-.
T Consensus 93 s~~Fl~el~~l~~~~~-~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 93 SRDFATEVRAVIKNKA-HPKVCEKLKSLMVE 122 (163)
T ss_dssp SHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 3456677777776533 78888877776654
No 137
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=47.27 E-value=2.7e+02 Score=29.08 Aligned_cols=86 Identities=8% Similarity=0.058 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhhccC---CCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHHHHHhhc
Q psy10052 175 FMRYKAMFKLRDINSVESTLALTEGLSH---GSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAI 251 (500)
Q Consensus 175 ~~r~~A~~~L~~~~~~~~i~~l~~~L~~---~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~ 251 (500)
..|..++..++..+.++.+. ..+.++. -++.+|..+.....+.+.. ...+.+..... .++.-|..++.+|+..
T Consensus 587 ~~r~~~~~~a~~~~~~~~~~-a~~~f~~~~~i~~~lr~~v~~~~~~~g~~--~~~l~~~~~~~-~~~~~~~~~l~al~~~ 662 (780)
T 1z5h_A 587 IALGRVSRLYVMVDESYAEE-MSKLFKDFDSAEPEMRSSIATAYALVTGD--LKGLLEKFRSV-DRDEDRVRIISAFGKL 662 (780)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHTTGGGGGGSCHHHHHHHHHHHHHHTCC--HHHHHHHHHSC-CSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCcH--HHHHHHHHhcC-CCHHHHHHHHHHhccC
Confidence 34555566666666666666 5554432 3567776655555444544 66666666543 3566777788888887
Q ss_pred CCchHHHHHHHhh
Q psy10052 252 ATPECYDVLRKYL 264 (500)
Q Consensus 252 ~~~~~~~~L~~~l 264 (500)
.++..+..+...+
T Consensus 663 ~~~~~~~~~l~~~ 675 (780)
T 1z5h_A 663 KSNTDLSTVYGMV 675 (780)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777666555443
No 138
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=47.06 E-value=20 Score=34.82 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=46.9
Q ss_pred ccHHHHHHHhhcc--------CCCHHHHHHHHHHHHhcCC-----------hhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy10052 69 DANDILRQVLEDK--------SQEPMVRHEAAEALGAIGD-----------KSSISILEKYAQDPVKEVSETCYLALKRI 129 (500)
Q Consensus 69 ~~~~~L~~~L~~~--------~~d~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 129 (500)
+.+..|+++|+.. +.|+.+..-|+.=+|.+-. -+.-..+.++++|+|+.||..|..++.++
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4578888999731 1268888888888887531 13446678899999999999999999886
Q ss_pred c
Q psy10052 130 Q 130 (500)
Q Consensus 130 ~ 130 (500)
-
T Consensus 475 m 475 (480)
T 1ho8_A 475 I 475 (480)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=46.05 E-value=1.1e+02 Score=24.04 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHhccC--CCccHHHHHHHhhcCCCCHHHHHHHHHHHhhc------------CCccHHHHHHHhhcCC
Q psy10052 349 DKSALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQDP 414 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~--~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~------------~~~~~~~~L~~~l~d~ 414 (500)
++|+..-...|..+..-. ...++..|.+.+.+. ++.+...|+..|... +..+.+..|..+++..
T Consensus 20 ~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~ 97 (140)
T 3ldz_A 20 AEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG 97 (140)
T ss_dssp SCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence 445555555555554321 123556666666665 577777666655432 3456777777777667
Q ss_pred CHhHHHHHHHHHHHhhhh
Q psy10052 415 VKEVSETCYLALKRIQFV 432 (500)
Q Consensus 415 ~~~vr~~A~~aL~~l~~~ 432 (500)
++.|+.....-+..+...
T Consensus 98 ~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 98 HPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 889999998888877643
No 140
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=45.74 E-value=45 Score=34.23 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=53.5
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhcC
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQD 113 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~d 113 (500)
+.+++.+++...=.++.-...|.+.|..+.......+ +++|...-.|+.||..|++.|....+.+ .++.|+++|+-
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dA-LeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLlQLVQALKy 154 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDA-LELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLLQLVQALKY 154 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHH-HHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-HHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 3445555544443456666788888888876655444 5566554348999999999999987764 46778888877
Q ss_pred CC
Q psy10052 114 PV 115 (500)
Q Consensus 114 ~~ 115 (500)
++
T Consensus 155 E~ 156 (696)
T 2x6h_A 155 ED 156 (696)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=44.30 E-value=1.1e+02 Score=24.29 Aligned_cols=31 Identities=13% Similarity=-0.060 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHhcC------CCHHHHHHHHHHHHHhc
Q psy10052 100 DKSSISILEKYAQD------PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 100 ~~~~~~~L~~~l~d------~~~~vr~~a~~aL~~~~ 130 (500)
..+.+..|++++.+ .++.|+..+...+....
T Consensus 79 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 79 KFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 44566667776653 36778877777766544
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.19 E-value=63 Score=27.67 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=16.0
Q ss_pred chHHHHHHHccCCCHHHHHHHHHHHHc
Q psy10052 38 TAIQCISEAFADESALLKHELAYCLGQ 64 (500)
Q Consensus 38 ~~~~~L~~~l~~~~~~vR~~a~~~L~~ 64 (500)
+++..|.+-|.++++.+...|+..|..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~ 68 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLES 68 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455566666666666666666655443
No 143
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=43.10 E-value=1.1e+02 Score=33.12 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=75.1
Q ss_pred hHhHHHHHHhhcC---CCCCHHHHHHHHHHHHhcC--------C---cchHHHHHHHccCCC-HHHHHHHHHHHHcc--C
Q psy10052 4 EEKILLIGQVLKD---SSKPLKERFRALFTLKNIG--------G---KTAIQCISEAFADES-ALLKHELAYCLGQM--K 66 (500)
Q Consensus 4 ~~~~~~L~~~L~~---~~~~~~~R~~A~~~L~~~~--------~---~~~~~~L~~~l~~~~-~~vR~~a~~~L~~~--~ 66 (500)
+..++.++..+.. .+..| .|..++..+..+- . ......+..+|.|+. ..||..|..+|+.+ .
T Consensus 796 ~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 796 KNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 3445555555532 12347 8888877765432 1 234556667788999 99999999999876 2
Q ss_pred C-C-ccHHHHHHHhhccC-C-------------CHHHHHHHHHHHHhcC--------ChhhHHHHHHHh----cCCCHHH
Q psy10052 67 D-S-DANDILRQVLEDKS-Q-------------EPMVRHEAAEALGAIG--------DKSSISILEKYA----QDPVKEV 118 (500)
Q Consensus 67 ~-~-~~~~~L~~~L~~~~-~-------------d~~vr~~a~~aL~~~~--------~~~~~~~L~~~l----~d~~~~v 118 (500)
. . .....++.-+.+.- . +...|.+|+-.|+.+- -|..+|.++..| .|+.+ |
T Consensus 875 ~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i 953 (997)
T 1vsy_5 875 WKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-T 953 (997)
T ss_dssp CCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-H
T ss_pred CCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-h
Confidence 2 2 33334444444331 0 0146777777887752 156666555544 56554 8
Q ss_pred HHHHHHHHHHhch
Q psy10052 119 SETCYLALKRIQF 131 (500)
Q Consensus 119 r~~a~~aL~~~~~ 131 (500)
+..+-.+|+.+..
T Consensus 954 ~~tvk~tlseFkr 966 (997)
T 1vsy_5 954 GNAAKNTISEFKK 966 (997)
T ss_dssp HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887654
No 144
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=41.47 E-value=1.4e+02 Score=31.44 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=82.9
Q ss_pred ChHhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcc------h-HHHHHHHcc--CCCH-HHHHHHHHHHHccCCCccHH
Q psy10052 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKT------A-IQCISEAFA--DESA-LLKHELAYCLGQMKDSDAND 72 (500)
Q Consensus 3 ~~~~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~------~-~~~L~~~l~--~~~~-~vR~~a~~~L~~~~~~~~~~ 72 (500)
....+.+|+++|+++... .+...+..|..+-.+. . ...|....+ -..+ .-+..|.+.||.+....-+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rv~pg~~~aa~vKA~fL~~i~~~~~~~~~i~~~~a~~lLg~m~gG~nv~ 100 (865)
T 1l5j_A 23 DANQMAALVELLKNPPAG--EEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIH 100 (865)
T ss_dssp CHHHHHHHHHHHHSCCTT--CHHHHHHHHHHSSCCTTCHHHHHHHHHHHHHHTTSSCBTTBCHHHHHHHHTTSCSSTTHH
T ss_pred CHHHHHHHHHHhcCCCcc--cHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcccCCccCHHHHHHhcccCCCCCchH
Confidence 456788999999988665 6777888888765432 1 112222222 1122 33568999999998888889
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHh-cCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchh
Q psy10052 73 ILRQVLEDKSQEPMVRHEAAEALGA-IGDKSSISILEKYAQDPVKEVSETCYLALKRIQFV 132 (500)
Q Consensus 73 ~L~~~L~~~~~d~~vr~~a~~aL~~-~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 132 (500)
.|+++|+ |..+...|+++|.. +--.+....+.+..+..++.-+ ..+.+..+-.|.
T Consensus 101 ~L~d~~~----~~~~a~~a~~~l~~~~l~~d~f~~v~~~~~~gn~~a~-~vl~swa~ae~F 156 (865)
T 1l5j_A 101 PLIDALD----DAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAK-QVMQSWADAEWF 156 (865)
T ss_dssp HHHHGGG----CTTTHHHHHHHHHTCCTTTTHHHHHHHHHHTTCHHHH-HHHHHHHTTHHH
T ss_pred HHHHHhC----chhhHHHHHHHHHhhhccHHHHHHHHHHHhccCHHHH-HHHHhccccccc
Confidence 9999994 35588889999987 4445667778888877666533 445555554443
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.35 E-value=1.3e+02 Score=23.82 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHccC--CCccHHHHHHHhhccCCCHHHHHHHHHHHHh------------cCChhhHHHHHHHhcC-
Q psy10052 49 DESALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGA------------IGDKSSISILEKYAQD- 113 (500)
Q Consensus 49 ~~~~~vR~~a~~~L~~~~--~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~------------~~~~~~~~~L~~~l~d- 113 (500)
++|+..-...+..+..-. ..+++..|.+-|.+. ++.+...|+..|.. ++..+++..|++++.+
T Consensus 26 ~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~--n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k 103 (149)
T 3g2s_A 26 ELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSP--QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPK 103 (149)
T ss_dssp SCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTT
T ss_pred CcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHccc
Confidence 345555555555444332 234455566666655 56666666655543 3345677778888764
Q ss_pred -----CCHHHHHHHHHHHHHhc
Q psy10052 114 -----PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 114 -----~~~~vr~~a~~aL~~~~ 130 (500)
.++.|+..+...+....
T Consensus 104 ~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 104 YLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHH
Confidence 56888888888887654
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.08 E-value=1.4e+02 Score=25.56 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=57.4
Q ss_pred cCCCHHHHHHHHHHHHcc--CCCccHHHHHHHhhccCCCHHHHHHHHHHHHhc------------CChhhHHHHHHHhc-
Q psy10052 48 ADESALLKHELAYCLGQM--KDSDANDILRQVLEDKSQEPMVRHEAAEALGAI------------GDKSSISILEKYAQ- 112 (500)
Q Consensus 48 ~~~~~~vR~~a~~~L~~~--~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~- 112 (500)
.++|+..-......+..- +..+++..|.+-|.+. ++.+...|+..|..+ ...+.+..|.++++
T Consensus 22 ~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~--n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~ 99 (226)
T 3zyq_A 22 LETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDK--NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR 99 (226)
T ss_dssp SSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc
Confidence 355677766766666653 2346678888888887 799999988877553 34566777777774
Q ss_pred CCCHHHHHHHHHHHHHhc
Q psy10052 113 DPVKEVSETCYLALKRIQ 130 (500)
Q Consensus 113 d~~~~vr~~a~~aL~~~~ 130 (500)
..++.|+..+...+....
T Consensus 100 ~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 100 QVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 466889988888887654
No 147
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=38.73 E-value=43 Score=33.76 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=49.9
Q ss_pred ChhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccHH---HHHHHhhc
Q psy10052 336 GKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSI---SILEKYAQ 412 (500)
Q Consensus 336 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~~---~~L~~~l~ 412 (500)
.+.+++.++...+-.++.-...+...|..+........ +++|...=.++.||..|+.-|.+..+++.. ..|.+.++
T Consensus 61 ~~~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dA-LELL~~~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQALK 139 (614)
T 3ls8_A 61 QEKALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDS-LELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALK 139 (614)
T ss_dssp CGGGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHH-GGGGSTTCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHGG
T ss_pred ChhHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHH-HHhCcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHhhh
Confidence 35677777666666666666667788888776554444 345543223788999999999888777644 44455554
No 148
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=36.90 E-value=76 Score=32.58 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=46.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHhccCCCccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCccH---HHHHHHhhcC
Q psy10052 337 KTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS---ISILEKYAQD 413 (500)
Q Consensus 337 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~~~~---~~~L~~~l~d 413 (500)
+.+++.++...+-.++.-...+...|..+........ +++|...=.++.||..|+..|....+++. ++.|.+.++-
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dA-LeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLlQLVQALKy 154 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDA-LELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLLQLVQALKY 154 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHH-HHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-HHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 5566666655555666656667777777765554444 34443222368888888888888766654 4445555543
Q ss_pred C
Q psy10052 414 P 414 (500)
Q Consensus 414 ~ 414 (500)
+
T Consensus 155 E 155 (696)
T 2x6h_A 155 E 155 (696)
T ss_dssp S
T ss_pred c
Confidence 3
No 149
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=34.70 E-value=1.7e+02 Score=23.17 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHhccC--CCccHHHHHHHhhcCCCCHHHHHHHHHHHhh------------cCCccHHHHHHHhhcC-
Q psy10052 349 DKSALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGA------------IGDKSSISILEKYAQD- 413 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~--~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~------------~~~~~~~~~L~~~l~d- 413 (500)
++|+..-...|..+..-. ...++..|.+.+.+. ++.+...|+..|.. ++..+.+..|.+++.+
T Consensus 26 ~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~--n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k 103 (149)
T 3g2s_A 26 ELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSP--QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPK 103 (149)
T ss_dssp SCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTT
T ss_pred CcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHccc
Confidence 456666666666665432 123566777777765 68888777766643 3456777888888764
Q ss_pred -----CCHhHHHHHHHHHHHhhh
Q psy10052 414 -----PVKEVSETCYLALKRIQF 431 (500)
Q Consensus 414 -----~~~~vr~~A~~aL~~l~~ 431 (500)
.++.|+.....-+..+..
T Consensus 104 ~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 104 YLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Confidence 578899999888888865
No 150
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=33.40 E-value=1.8e+02 Score=31.16 Aligned_cols=91 Identities=12% Similarity=-0.033 Sum_probs=60.2
Q ss_pred cchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHHHHhcC
Q psy10052 37 KTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILEKYAQD 113 (500)
Q Consensus 37 ~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~~~l~d 113 (500)
+.+++.++....-.++.-...+...|..........+ +++|...-.|+.||..|++.|..+.+.+ .++.|++.|+.
T Consensus 439 p~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~A-LeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLky 517 (940)
T 2wxf_A 439 PEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSA-LELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKY 517 (940)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHH-HHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGG
T ss_pred chHHHHHHhccCCCCHHHHHHHHHHHccCCCCCHHHH-HHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 4577777766665566556677788887765554343 5666554338999999999999887654 56778888865
Q ss_pred C----CHHHHHHHHHHHHH
Q psy10052 114 P----VKEVSETCYLALKR 128 (500)
Q Consensus 114 ~----~~~vr~~a~~aL~~ 128 (500)
+ .+-++.-.-.|+.+
T Consensus 518 E~~~~s~L~~fLl~ra~~n 536 (940)
T 2wxf_A 518 ESYLDCELTKFLLGRALAN 536 (940)
T ss_dssp CSSSSCHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHhC
Confidence 4 34455555555543
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=33.16 E-value=1.3e+02 Score=32.59 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhc--------CC---hhhHHHHHHHhcCCC-HHHHHHHHHHHhcc--CC-C-ccHHHHHHHhhcC
Q psy10052 318 SKPLKERFRALFTLKNI--------GG---KTAIQCISEAFADKS-ALLKHELAYCLGQM--KD-S-DANDILRQVLEDK 381 (500)
Q Consensus 318 ~~~~~~r~~a~~~L~~~--------~~---~~~~~~L~~~l~~~~-~~vr~~a~~aL~~l--~~-~-~~~~~L~~~l~~~ 381 (500)
+++| .|...+..+..+ .. ......++.+|.|+. .+||..|..+|+.+ +. + ..+..++..+.+.
T Consensus 813 s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~ 891 (997)
T 1vsy_5 813 LSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG 891 (997)
T ss_dssp SCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS
T ss_pred CCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 3568 888887765422 11 234567778889999 99999999999766 32 2 3333444433332
Q ss_pred CCC--------------HHHHHHHHHHHhhcC--------CccHHHHHHHh----hcCCCHhHHHHHHHHHHHhhh
Q psy10052 382 SQE--------------PMVRHEAAEALGAIG--------DKSSISILEKY----AQDPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 382 ~~~--------------~~vR~~a~~aL~~~~--------~~~~~~~L~~~----l~d~~~~vr~~A~~aL~~l~~ 431 (500)
-.. ...|.+++-+|+.+- .|..+|.+... .+|+. .|+.++..+|+....
T Consensus 892 ~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkr 966 (997)
T 1vsy_5 892 LDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKK 966 (997)
T ss_dssp STTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHH
T ss_pred HhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHh
Confidence 101 146788888888752 25666555443 35644 499999999998754
No 152
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.73 E-value=1.8e+02 Score=22.92 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHhccC--CCccHHHHHHHhhcCCCCHHHHHHHHHHHhh------------cCCccHHHHHHHhhcC-
Q psy10052 349 DKSALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGA------------IGDKSSISILEKYAQD- 413 (500)
Q Consensus 349 ~~~~~vr~~a~~aL~~l~--~~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~------------~~~~~~~~~L~~~l~d- 413 (500)
++|+..-...|..+..-. ...++..|.+-+.+. ++.+...|+..|.. ++..+.+..|.+++.+
T Consensus 16 ~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~--n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k 93 (148)
T 1mhq_A 16 EQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSP--QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK 93 (148)
T ss_dssp SCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred CcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Confidence 344444444444443322 123555566666655 57777666666543 2345677777777753
Q ss_pred -----CCHhHHHHHHHHHHHhhh
Q psy10052 414 -----PVKEVSETCYLALKRIQF 431 (500)
Q Consensus 414 -----~~~~vr~~A~~aL~~l~~ 431 (500)
.++.|+..+..-+..+..
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 94 YLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Confidence 477899888888777764
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=31.25 E-value=2.1e+02 Score=23.21 Aligned_cols=79 Identities=14% Similarity=0.031 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHccC--CCccHHHHHHHhhccCCCHHHHHHHHHHHHh------------cCChhhHHHHHHHhcC--
Q psy10052 50 ESALLKHELAYCLGQMK--DSDANDILRQVLEDKSQEPMVRHEAAEALGA------------IGDKSSISILEKYAQD-- 113 (500)
Q Consensus 50 ~~~~vR~~a~~~L~~~~--~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~------------~~~~~~~~~L~~~l~d-- 113 (500)
+|+..-...+..+..-. ..+++..|.+-|.+. ++.|+..|+..|.. ++..+.+..|++++..
T Consensus 29 ~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~ 106 (171)
T 1juq_A 29 EDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKY 106 (171)
T ss_dssp CCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCC
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhcccc
Confidence 34444444444444331 123445555555555 55565555555533 2344566667777642
Q ss_pred ----CCHHHHHHHHHHHHHhc
Q psy10052 114 ----PVKEVSETCYLALKRIQ 130 (500)
Q Consensus 114 ----~~~~vr~~a~~aL~~~~ 130 (500)
.+..|+..+...+....
T Consensus 107 ~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 107 LGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp CCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 35778877777776654
No 154
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=30.13 E-value=2.2e+02 Score=23.09 Aligned_cols=103 Identities=9% Similarity=0.012 Sum_probs=65.0
Q ss_pred cHHHHHHHhhcC---CCCHHHHHHHHHHHhhc--CCccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccc-cccCC
Q psy10052 370 ANDILRQVLEDK---SQEPMVRHEAAEALGAI--GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ-KDTGN 443 (500)
Q Consensus 370 ~~~~L~~~l~~~---~~~~~vR~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~ 443 (500)
.+..+++-+.++ .++|..=...+..+..- +..+++..|.+.++.+++.++..|..-|..+-...+.... +.
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ev--- 89 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV--- 89 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH---
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH---
Confidence 455555544432 34677777777776553 2346778888888889999999998888887665443222 11
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHhcC----CccHHHHHHHHHHhHh
Q psy10052 444 IYGSVDPTPPLDDVSDINKLKEILLNE----NEDLFMRYKAMFKLRD 486 (500)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~r~~a~~al~~ 486 (500)
...+.+..|++++... ..+..||.++..-+..
T Consensus 90 -----------as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 90 -----------GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp -----------TSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred -----------hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 2357778888877532 2345677777665544
No 155
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=29.01 E-value=2.5e+02 Score=30.11 Aligned_cols=92 Identities=12% Similarity=-0.000 Sum_probs=60.7
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHc---cC-CCccHHHHHHHhhccCCCHHHHHHHHHHHHhcCChh---hHHHHH
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQ---MK-DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS---SISILE 108 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~---~~-~~~~~~~L~~~L~~~~~d~~vr~~a~~aL~~~~~~~---~~~~L~ 108 (500)
.+.+++.++....=.++.-...+...|.. .. .+-....-+++|...-.|+.||..|++.|..+.+.+ .++.|+
T Consensus 444 ~p~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~YL~QLV 523 (961)
T 1e7u_A 444 DPKAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLV 523 (961)
T ss_dssp CGGGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcHHHHHHheecCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46678888877766667677778888877 42 111223345666554337899999999999887654 567788
Q ss_pred HHhcCC----CHHHHHHHHHHHH
Q psy10052 109 KYAQDP----VKEVSETCYLALK 127 (500)
Q Consensus 109 ~~l~d~----~~~vr~~a~~aL~ 127 (500)
++|+.+ .+-.+.-.-.|+.
T Consensus 524 QaLkyE~~~~s~L~~fLl~ra~~ 546 (961)
T 1e7u_A 524 QAVKFEPYHDSALARFLLKRGLR 546 (961)
T ss_dssp HHGGGCSSSSCHHHHHHHHHHHH
T ss_pred HHHhhccccCChHHHHHHHHHhc
Confidence 888532 3555555555554
No 156
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=26.90 E-value=1.3e+02 Score=32.66 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=51.8
Q ss_pred CcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHHHH-HhcCChh---hHHHHHHHh
Q psy10052 36 GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEAL-GAIGDKS---SISILEKYA 111 (500)
Q Consensus 36 ~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~aL-~~~~~~~---~~~~L~~~l 111 (500)
.+.+++.++....=.++.-...+.+.|..........+ +++|...-.|+.||..|++.| ....+.+ .++.|+++|
T Consensus 584 ~p~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~A-LeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQAL 662 (1091)
T 3hhm_A 584 IPEILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQA-MELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVL 662 (1091)
T ss_dssp SGGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHH-HHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGG
T ss_pred ChhHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHH-HHhCcccCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 34577777776665555555678888887765544333 555655423789999999999 7777654 466777777
Q ss_pred cCC
Q psy10052 112 QDP 114 (500)
Q Consensus 112 ~d~ 114 (500)
+.+
T Consensus 663 KyE 665 (1091)
T 3hhm_A 663 KYE 665 (1091)
T ss_dssp GGC
T ss_pred hhc
Confidence 543
No 157
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=23.76 E-value=6.3e+02 Score=26.23 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHhccCCCCcHHHHHHHhhc-cCCCHHHHHHHHHHHhhcCCchHHHHHHH-hhcCCcHHHHHHHHHHhhhc
Q psy10052 205 SLYRHEIAFVLGQMQNPSSIPALTSALED-QTQNEMVRHECAEALGAIATPECYDVLRK-YLSDEKVVVRQSCEIALDMC 282 (500)
Q Consensus 205 ~~vr~~a~~aL~~~~~~~~i~~L~~~l~~-~~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~~~~~~vr~~a~~al~~l 282 (500)
..+|..++..++..+.++++. ..+.+.. ..-++++|..+.......|.. ...+.+ +.++.+..-+..++.||+..
T Consensus 586 ~~~r~~~~~~a~~~~~~~~~~-a~~~f~~~~~i~~~lr~~v~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~l~al~~~ 662 (780)
T 1z5h_A 586 KIALGRVSRLYVMVDESYAEE-MSKLFKDFDSAEPEMRSSIATAYALVTGD--LKGLLEKFRSVDRDEDRVRIISAFGKL 662 (780)
T ss_dssp HHHHHHHHHHHHHHCHHHHHH-HHTTGGGGGGSCHHHHHHHHHHHHHHTCC--HHHHHHHHHSCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCcH--HHHHHHHHhcCCCHHHHHHHHHHhccC
Confidence 446666777777777666666 5555542 124688888777766666665 554444 45566788888888898855
Q ss_pred c
Q psy10052 283 D 283 (500)
Q Consensus 283 ~ 283 (500)
.
T Consensus 663 ~ 663 (780)
T 1z5h_A 663 K 663 (780)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.82 E-value=2.2e+02 Score=30.40 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHc----cCC-----CHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHH
Q psy10052 23 ERFRALFTLKNIGGKTAIQCISEAF----ADE-----SALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAE 93 (500)
Q Consensus 23 ~R~~A~~~L~~~~~~~~~~~L~~~l----~~~-----~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~ 93 (500)
.|..++......|.+.++....+.+ .++ .|.+|......-.+.|+......+.+.+...+ ++.-|...+.
T Consensus 688 lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~-~~~ek~~ll~ 766 (909)
T 4fke_A 688 SEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ-LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC-CHHHHHHHHH
Confidence 4566666667777665555444433 332 25566554444444566666677777666654 6677778888
Q ss_pred HHHhcCChhhHHHHHHHhcCC
Q psy10052 94 ALGAIGDKSSISILEKYAQDP 114 (500)
Q Consensus 94 aL~~~~~~~~~~~L~~~l~d~ 114 (500)
+||...++..+..++...-++
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCT
T ss_pred HhCCCCCHHHHHHHHHHHhCC
Confidence 888877777766666655443
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.72 E-value=3.6e+02 Score=22.72 Aligned_cols=60 Identities=10% Similarity=0.203 Sum_probs=33.6
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHhh------------cCCccHHHHHHHhhc-CCCHhHHHHHHHHHHHhhh
Q psy10052 370 ANDILRQVLEDKSQEPMVRHEAAEALGA------------IGDKSSISILEKYAQ-DPVKEVSETCYLALKRIQF 431 (500)
Q Consensus 370 ~~~~L~~~l~~~~~~~~vR~~a~~aL~~------------~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~l~~ 431 (500)
++..|.+-+.+. ++.+...|+..|.. ++..+.+..|..++. ..+..|+..+..-+..+..
T Consensus 43 a~r~l~krl~~~--n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSP--NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 444455555444 45555555544433 234455666666653 4567777777776666653
No 160
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.01 E-value=2.6e+02 Score=26.44 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHc----cC-----CCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCHHHHHHHHH
Q psy10052 23 ERFRALFTLKNIGGKTAIQCISEAF----AD-----ESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAE 93 (500)
Q Consensus 23 ~R~~A~~~L~~~~~~~~~~~L~~~l----~~-----~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~~vr~~a~~ 93 (500)
.|...+......|.+.++..-.+.+ .+ -.|.+|. .+++.+-. .....+.|.+.....+ ++.-|...+.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~-~Vy~~~~~-~~~~~~~l~~~y~~s~-~~~ek~~ll~ 275 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL-AVFAVGAQ-STEGWDFLYSKYQFSL-SSTEKSQIEF 275 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH-HHHHHHTT-SHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce-eEEeeeeC-CHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 5556666666666655554433332 22 1345553 33443322 2444566666655553 5666777777
Q ss_pred HHHhcCChhhHHHHHHHh
Q psy10052 94 ALGAIGDKSSISILEKYA 111 (500)
Q Consensus 94 aL~~~~~~~~~~~L~~~l 111 (500)
+||...++..+..++..+
T Consensus 276 aL~~s~d~~ll~~~L~~~ 293 (419)
T 3rjo_A 276 ALCRTQNKEKLQWLLDES 293 (419)
T ss_dssp HHTTCSCHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 777777776666555554
Done!