RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10052
(500 letters)
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 88.4 bits (219), Expect = 3e-19
Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 35/303 (11%)
Query: 12 QVLKDSSKPLKERFRALFTLKNIGGKT---AIQCISEAFADESALLKHELAYCLGQMKDS 68
VL +AL L ++ + A + + DE L++ A LG++
Sbjct: 14 LVLLSYGSEAAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSE 73
Query: 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ-DPVKEVSETCYLALK 127
+A +LR++L D+ P VR AA+ALG +GD ++ L + + D + V AL
Sbjct: 74 EAVPLLRELLSDED--PRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALG 131
Query: 128 RIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 187
++ D + P L+ + D + + L +R A L ++
Sbjct: 132 KL---------GDERAL------DPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL 176
Query: 188 NSVESTLALTEGLSHGSSLYR--------------HEIAFVLGQMQNPSSIPALTSALED 233
E+ L E L + R E A +L + + S+ +AL
Sbjct: 177 GDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLA 236
Query: 234 QTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYA 293
+ A A +L + + + L + D N+V L+ A
Sbjct: 237 LGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAA 296
Query: 294 DTL 296
L
Sbjct: 297 LAL 299
Score = 77.7 bits (191), Expect = 1e-15
Identities = 71/286 (24%), Positives = 116/286 (40%), Gaps = 23/286 (8%)
Query: 154 LDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLA------LTEGLSHGSSLY 207
L D +D+ + +L+ + A+ L +++ + LA L + L L
Sbjct: 1 LSDDADVVRSAAVLVLLSYGS-EAAAALQALAELDDLILELAPEAADELLKLLEDEDLLV 59
Query: 208 RHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLS-D 266
R A LG++ + ++P L L D+ + VR A+ALG + PE L + L D
Sbjct: 60 RLSAAVALGELGSEEAVPLLRELLSDE--DPRVRDAAADALGELGDPEAVPPLVELLEND 117
Query: 267 EKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFR 326
E VR + AL E +++ + +E L L R
Sbjct: 118 ENEGVRAAAARALGKLGDERALDPLLE-------ALQDEDSGSAAAALDA--ALLDVRAA 168
Query: 327 ALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSD--ANDILRQVLEDKSQE 384
A L +G AI + E D+ A ++ A LGQ+ + A D+L + L D +
Sbjct: 169 AAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSD--ES 226
Query: 385 PMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 430
VR A ALG IGD+ ++ L K +D ++ AL +
Sbjct: 227 LEVRKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALD 272
Score = 65.3 bits (159), Expect = 1e-11
Identities = 87/370 (23%), Positives = 138/370 (37%), Gaps = 76/370 (20%)
Query: 64 QMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCY 123
+A D L ++LED+ VR AA ALG +G + ++ +L + D V +
Sbjct: 38 LELAPEAADELLKLLEDEDLL--VRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAA 95
Query: 124 LALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMR---YKA 180
AL + E PPL LL +E+ +R +A
Sbjct: 96 DALGELG--DPEA--------------VPPL----------VELLENDENEGVRAAAARA 129
Query: 181 MFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMV 240
+ KL D +++ L + GS+ + A V
Sbjct: 130 LGKLGDERALDPLLEALQDEDSGSAAAALDAAL------------------------LDV 165
Query: 241 RHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFK 300
R AEALG + PE +L + L DE VR++ A L +
Sbjct: 166 RAAAAEALGELGDPEAIPLLIELLEDEDADVRRAA-----------------ASALGQLG 208
Query: 301 MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAY 360
E L+ + L D S + R AL L IG + A+ +++A D+ +L A
Sbjct: 209 SENVEAADLLVKALSDESLEV--RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAA 266
Query: 361 CLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSE 420
LG D + +L + VR EAA ALG IG + +++ L +D +V +
Sbjct: 267 ALGA-LDLAEAALPLLLLLID-EANAVRLEAALALGQIGQEKAVAALLLALEDGDADVRK 324
Query: 421 TCYLALKRIQ 430
+ L+ I
Sbjct: 325 AALILLEGID 334
Score = 38.4 bits (89), Expect = 0.007
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 364 QMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCY 423
+A D L ++LED+ VR AA ALG +G + ++ +L + D V +
Sbjct: 38 LELAPEAADELLKLLEDEDLL--VRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAA 95
Query: 424 LALKRIQF 431
AL +
Sbjct: 96 DALGELGD 103
Score = 34.1 bits (78), Expect = 0.14
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 9 LIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDS 68
L+ + L D S + R AL L IG + A+ +++A DE +L A LG D
Sbjct: 217 LLVKALSDESLEV--RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGA-LDL 273
Query: 69 DANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKR 128
+ +L + VR EAA ALG IG + +++ L +D +V + + L+
Sbjct: 274 AEAALPLLLLLID-EANAVRLEAALALGQIGQEKAVAALLLALEDGDADVRKAALILLEG 332
Query: 129 IQ 130
I
Sbjct: 333 ID 334
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 65.1 bits (159), Expect = 3e-13
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 195 ALTEGL-SHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT 253
AL E L S R A LG++ +P ++PAL L+D + VR AEALG +
Sbjct: 3 ALLEALLSDPDPEVRAAAARALGELGDPEALPALLELLKDP--DPEVRRAAAEALGKLGD 60
Query: 254 PECYDVLRKYLSDEKV-VVRQSCEIAL 279
PE L + L D+ VVR + AL
Sbjct: 61 PEALPALLELLQDDDDAVVRAAAASAL 87
Score = 63.5 bits (155), Expect = 9e-13
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 43 ISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS 102
+ +D ++ A LG++ D +A L ++L+D P VR AAEALG +GD
Sbjct: 5 LEALLSDPDPEVRAAAARALGELGDPEALPALLELLKDPD--PEVRRAAAEALGKLGDPE 62
Query: 103 SISILEKYAQ-DPVKEVSETCYLALK 127
++ L + Q D V AL
Sbjct: 63 ALPALLELLQDDDDAVVRAAAASALA 88
Score = 63.1 bits (154), Expect = 1e-12
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 343 ISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKS 402
+ +D ++ A LG++ D +A L ++L+D P VR AAEALG +GD
Sbjct: 5 LEALLSDPDPEVRAAAARALGELGDPEALPALLELLKDPD--PEVRRAAAEALGKLGDPE 62
Query: 403 SISILEKYAQ-DPVKEVSETCYLALK 427
++ L + Q D V AL
Sbjct: 63 ALPALLELLQDDDDAVVRAAAASALA 88
Score = 52.7 bits (127), Expect = 5e-09
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 160 INKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQ 219
+ L E LL++ D +R A L ++ E+ AL E L R A LG++
Sbjct: 1 LEALLEALLSD-PDPEVRAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKLG 59
Query: 220 NPSSIPALTSALEDQTQNEMVRHECAEALG 249
+P ++PAL L+D + +VR A AL
Sbjct: 60 DPEALPALLELLQD-DDDAVVRAAAASALA 88
Score = 52.3 bits (126), Expect = 8e-09
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 8 LLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKD 67
L+ +L D + R A L +G A+ + E D ++ A LG++ D
Sbjct: 3 ALLEALLSDPDPEV--RAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKLGD 60
Query: 68 SDANDILRQVLEDKSQEPMVRHEAAEALG 96
+A L ++L+D + +VR AA AL
Sbjct: 61 PEALPALLELLQD-DDDAVVRAAAASALA 88
Score = 52.0 bits (125), Expect = 1e-08
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 308 LLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKD 367
L+ +L D + R A L +G A+ + E D ++ A LG++ D
Sbjct: 3 ALLEALLSDPDPEV--RAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKLGD 60
Query: 368 SDANDILRQVLEDKSQEPMVRHEAAEALG 396
+A L ++L+D + +VR AA AL
Sbjct: 61 PEALPALLELLQD-DDDAVVRAAAASALA 88
Score = 41.6 bits (98), Expect = 5e-05
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 129
+ L + L +P VR AA ALG +GD ++ L + +DP EV AL ++
Sbjct: 2 EALLEALL-SDPDPEVRAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKL 58
Score = 41.6 bits (98), Expect = 5e-05
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 372 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 429
+ L + L +P VR AA ALG +GD ++ L + +DP EV AL ++
Sbjct: 2 EALLEALL-SDPDPEVRAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKL 58
Score = 41.2 bits (97), Expect = 8e-05
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 224 IPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCD 283
+ AL AL + VR A ALG + PE L + L D VR++ AL
Sbjct: 1 LEALLEALLSDP-DPEVRAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKLG 59
Query: 284 YENSVEL 290
++
Sbjct: 60 DPEALPA 66
>gnl|CDD|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats. Present in subunits of
cyanobacterial phycocyanin lyase, and other proteins.
Probable scaffolding role.
Length = 30
Score = 45.5 bits (109), Expect = 5e-07
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 85 PMVRHEAAEALGAIGDKSSISILEKYAQDP 114
P+VRHEAA ALG +GD+ ++ L K +D
Sbjct: 1 PLVRHEAAFALGQLGDEEAVPALIKALEDE 30
Score = 45.5 bits (109), Expect = 5e-07
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 385 PMVRHEAAEALGAIGDKSSISILEKYAQDP 414
P+VRHEAA ALG +GD+ ++ L K +D
Sbjct: 1 PLVRHEAAFALGQLGDEEAVPALIKALEDE 30
Score = 43.6 bits (104), Expect = 3e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 238 EMVRHECAEALGAIATPECYDVLRKYLSDE 267
+VRHE A ALG + E L K L DE
Sbjct: 1 PLVRHEAAFALGQLGDEEAVPALIKALEDE 30
Score = 42.0 bits (100), Expect = 1e-05
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 206 LYRHEIAFVLGQMQNPSSIPALTSALEDQ 234
L RHE AF LGQ+ + ++PAL ALED+
Sbjct: 2 LVRHEAAFALGQLGDEEAVPALIKALEDE 30
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 52 ALLKHELAYCLGQMKDSDANDILRQVLED 80
L++HE A+ LGQ+ D +A L + LED
Sbjct: 1 PLVRHEAAFALGQLGDEEAVPALIKALED 29
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 352 ALLKHELAYCLGQMKDSDANDILRQVLED 380
L++HE A+ LGQ+ D +A L + LED
Sbjct: 1 PLVRHEAAFALGQLGDEEAVPALIKALED 29
Score = 27.4 bits (62), Expect = 1.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 21 LKERFRALFTLKNIGGKTAIQCISEAFADE 50
R A F L +G + A+ + +A DE
Sbjct: 1 PLVRHEAAFALGQLGDEEAVPALIKALEDE 30
Score = 25.8 bits (58), Expect = 4.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 321 LKERFRALFTLKNIGGKTAIQCISEAFAD 349
R A F L +G + A+ + +A D
Sbjct: 1 PLVRHEAAFALGQLGDEEAVPALIKALED 29
>gnl|CDD|111969 pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat. This family
contains a short bi-helical repeat that is related to
pfam02985. Cyanobacteria and red algae harvest light
energy using macromolecular complexes known as
phycobilisomes (PBS), peripherally attached to the
photosynthetic membrane. The major components of PBS are
the phycobiliproteins. These heterodimeric proteins are
covalently attached to phycobilins: open-chain
tetrapyrrole chromophores, which function as the
photosynthetic light-harvesting pigments.
Phycobiliproteins differ in sequence and in the nature
and number of attached phycobilins to each of their
subunits. This family includes the lyase enzymes that
specifically attach particular phycobilins to
apophycobiliprotein subunits. The most comprehensively
studied of these is the CpcE/F lyase, which attaches
phycocyanobilin (PCB) to the alpha subunit of
apophycocyanin. Similarly, MpeU/V attaches
phycoerythrobilin to phycoerythrin II, while CpeY/Z is
thought to be involved in phycoerythrobilin (PEB)
attachment to phycoerythrin (PE) I (PEs I and II differ
in sequence and in the number of attached molecules of
PEB: PE I has five, PE II has six). All the reactions of
the above lyases involve an apoprotein cysteine SH
addition to a terminal delta 3,3'-double bond. Such a
reaction is not possible in the case of phycoviolobilin
(PVB), the phycobilin of alpha-phycoerythrocyanin
(alpha-PEC). It is thought that in this case, PCB, not
PVB, is first added to apo-alpha-PEC, and is then
isomerised to PVB. The addition reaction has been shown
to occur in the presence of either of the components of
alpha-PEC-PVB lyase PecE or PecF (or both). The
isomerisation reaction occurs only when both PecE and
PecF components are present, i.e. the PecE/F
phycobiliprotein lyase is also a phycobilin isomerase.
Another member of this family is the NblB protein, whose
similarity to the phycobiliprotein lyases was previously
noted. This constitutively expressed protein is not
known to have any lyase activity. It is thought to be
involved in the coordination of PBS degradation with
environmental nutrient limitation. It has been suggested
that the similarity of NblB to the phycobiliprotein
lyases is due to the ability to bind tetrapyrrole
phycobilins via the common repeated motif.
Length = 27
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 87 VRHEAAEALGAIGDKSSISILEKYAQD 113
VR AA ALGA+GD +I L + D
Sbjct: 1 VRRAAARALGALGDPEAIPALIEALDD 27
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 387 VRHEAAEALGAIGDKSSISILEKYAQD 413
VR AA ALGA+GD +I L + D
Sbjct: 1 VRRAAARALGALGDPEAIPALIEALDD 27
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 240 VRHECAEALGAIATPECYDVLRKYLSD 266
VR A ALGA+ PE L + L D
Sbjct: 1 VRRAAARALGALGDPEAIPALIEALDD 27
Score = 33.6 bits (78), Expect = 0.008
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 208 RHEIAFVLGQMQNPSSIPALTSALED 233
R A LG + +P +IPAL AL+D
Sbjct: 2 RRAAARALGALGDPEAIPALIEALDD 27
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 28.3 bits (64), Expect = 0.63
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 224 IPALTSALEDQTQNEMVRHECAEALGAIA 252
+P L L D + VR AEALGA+A
Sbjct: 2 LPLLLELLNDP--DPEVREAAAEALGALA 28
Score = 26.3 bits (59), Expect = 3.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDK 101
+L ++L D P VR AAEALGA+ +
Sbjct: 3 PLLLELLNDPD--PEVREAAAEALGALAEV 30
Score = 26.3 bits (59), Expect = 3.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 372 DILRQVLEDKSQEPMVRHEAAEALGAIGDK 401
+L ++L D P VR AAEALGA+ +
Sbjct: 3 PLLLELLNDPD--PEVREAAAEALGALAEV 30
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 29.0 bits (65), Expect = 0.80
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 238 EMVRHECAEALGAIA----------TPECYDVLRKYLSDEKVVVRQSCEIAL 279
VR A ALGA+A PE L L D+ VR++ AL
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWAL 52
Score = 28.6 bits (64), Expect = 0.92
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 208 RHEIAFVLGQMQN----------PSSIPALTSALEDQTQNEMVRHECAEALGAI 251
R A LG + P +PAL L+D ++ VR A ALG I
Sbjct: 4 REAAALALGALAGGGPELLRPAVPELLPALLPLLKDD--DDEVREAAAWALGRI 55
Score = 26.6 bits (59), Expect = 4.8
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 85 PMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRI 129
VR AA ALGA+ + L +D EV E AL RI
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
Score = 26.6 bits (59), Expect = 4.8
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 385 PMVRHEAAEALGAIGD----------KSSISILEKYAQDPVKEVSETCYLALKRI 429
VR AA ALGA+ + L +D EV E AL RI
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 31.5 bits (71), Expect = 1.4
Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 16/153 (10%)
Query: 168 LNENEDLFMRYKAMFKLRDI------NSVESTLALTEGLSHGSSLYRHEIAFVLGQM--Q 219
L ++D +RY +F L V STL L +S G+ R LG +
Sbjct: 524 LLYDKDSILRYNGVFSLALAYVGTGNLGVVSTL-LHYAVSDGNDDVRRAAVIALGFVCCD 582
Query: 220 NPSSIPALTSALEDQTQNEMVRHECAEALG----AIATPECYDVLRKYLSDEKVVVRQSC 275
+ + L + + N VR A ALG D+L + D VRQS
Sbjct: 583 DRDLLVGTVELLSE-SHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSA 641
Query: 276 EIALDMCDYENSVEL--QYADTLCKFKMIPEEK 306
IA+ M + + EL + KF + +K
Sbjct: 642 MIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674
Score = 28.8 bits (64), Expect = 9.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 81 KSQEPMVRHEAAEALG----AIGDKSSISILEKYAQDPVKEVSETCYLALKRI 129
+S VR A ALG GDK + ILE D V ++ +A+ I
Sbjct: 596 ESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMI 648
Score = 28.8 bits (64), Expect = 9.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 381 KSQEPMVRHEAAEALG----AIGDKSSISILEKYAQDPVKEVSETCYLALKRI 429
+S VR A ALG GDK + ILE D V ++ +A+ I
Sbjct: 596 ESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMI 648
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 30.4 bits (69), Expect = 2.5
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 6 KILLIGQVLKDSSKPLK------ERFRAL--FTLKNIGGKTAIQCISEAFADESALLKHE 57
K L+G ++K P+K ER R + F KN+GG I A +D+S L++
Sbjct: 170 KSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKY 229
Query: 58 LAYC 61
A+C
Sbjct: 230 GAFC 233
Score = 28.5 bits (64), Expect = 8.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 306 KILLIGQVLKDSSKPLK------ERFRAL--FTLKNIGGKTAIQCISEAFADKSALLKHE 357
K L+G ++K P+K ER R + F KN+GG I A +D S L++
Sbjct: 170 KSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKY 229
Query: 358 LAYC 361
A+C
Sbjct: 230 GAFC 233
>gnl|CDD|224612 COG1698, COG1698, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 93
Score = 27.7 bits (62), Expect = 4.7
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 73 ILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDP 114
+L ++++D + +R A EA A+ ++ ++ISILE+ + DP
Sbjct: 21 LLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDP 71
Score = 27.7 bits (62), Expect = 4.7
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 373 ILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDP 414
+L ++++D + +R A EA A+ ++ ++ISILE+ + DP
Sbjct: 21 LLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDP 71
>gnl|CDD|183262 PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase;
Provisional.
Length = 251
Score = 29.2 bits (66), Expect = 4.9
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 206 LYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLS 265
L +E + ++ P+SIPA Q M + LGA ATP Y Y+
Sbjct: 179 LQEYEASGGKLGLKPPASIPAAVRKQLADNQKLM------DDLGANATPAIY-----YMD 227
Query: 266 DEKVVVRQ 273
+ + +
Sbjct: 228 KDGTLQQV 235
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 29.3 bits (66), Expect = 5.5
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 220 NPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLS 265
NP+ IP + +D + + EAL P+ VL L+
Sbjct: 39 NPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALA 84
>gnl|CDD|235282 PRK04330, PRK04330, hypothetical protein; Provisional.
Length = 88
Score = 27.2 bits (61), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 15/47 (31%)
Query: 68 SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDP 114
++A +IL ++ + P VR AA A ISIL++ + DP
Sbjct: 36 TEAKEILL----NEEESPGVR--AATA---------ISILDEISNDP 67
Score = 27.2 bits (61), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 15/47 (31%)
Query: 368 SDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDP 414
++A +IL ++ + P VR AA A ISIL++ + DP
Sbjct: 36 TEAKEILL----NEEESPGVR--AATA---------ISILDEISNDP 67
>gnl|CDD|183236 PRK11619, PRK11619, lytic murein transglycosylase; Provisional.
Length = 644
Score = 28.9 bits (65), Expect = 8.3
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 62 LGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALG 96
L Q + ++A +ILRQ+++ + PMV AA+ LG
Sbjct: 357 LEQGRKAEAEEILRQLMQQRGFYPMV---AAQRLG 388
Score = 28.9 bits (65), Expect = 8.3
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 362 LGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALG 396
L Q + ++A +ILRQ+++ + PMV AA+ LG
Sbjct: 357 LEQGRKAEAEEILRQLMQQRGFYPMV---AAQRLG 388
>gnl|CDD|202724 pfam03685, UPF0147, Uncharacterized protein family (UPF0147). This
family of small proteins have no known function.
Length = 85
Score = 26.4 bits (59), Expect = 9.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
Query: 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDP 114
A D L ++ + P VR AA ++ISIL++ + DP
Sbjct: 32 ATDAKA-ALLNEEESPAVR--AA---------TAISILDEISNDP 64
Score = 26.4 bits (59), Expect = 9.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
Query: 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDP 414
A D L ++ + P VR AA ++ISIL++ + DP
Sbjct: 32 ATDAKA-ALLNEEESPAVR--AA---------TAISILDEISNDP 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0885 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,166,873
Number of extensions: 2497655
Number of successful extensions: 2248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2211
Number of HSP's successfully gapped: 72
Length of query: 500
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 399
Effective length of database: 6,457,848
Effective search space: 2576681352
Effective search space used: 2576681352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.0 bits)