RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10052
(500 letters)
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 142 bits (360), Expect = 5e-40
Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 31/228 (13%)
Query: 26 RALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP 85
R + ++ + D+S ++ AY LG++ D A + L + L+D+ +
Sbjct: 2 RGSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DA 59
Query: 86 MVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 145
VR AA+ALG IGD+ ++ L K +D V ++ +AL +I
Sbjct: 60 WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI---------------- 103
Query: 146 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSS 205
D + L + L ++ED F+R A F L +I + L + L
Sbjct: 104 ---------GDERAVEPLIKAL--KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDG 152
Query: 206 LYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT 253
R A LG++ A+ E R L +
Sbjct: 153 WVRQSAADALGEIGGERVRAAMEKLAET--GTGFARKVAVNYLETHKS 198
Score = 140 bits (355), Expect = 3e-39
Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 25/225 (11%)
Query: 179 KAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNE 238
+ E + L S R A+ LG++ + ++ L AL+D+ +
Sbjct: 2 RGSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DA 59
Query: 239 MVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCK 298
VR A+ALG I + L K L DE VRQS +AL E +VE
Sbjct: 60 WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEP-------- 111
Query: 299 FKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHEL 358
+ + LKD + R A F L IG + A++ + +A D+ ++
Sbjct: 112 -----------LIKALKDEDWFV--RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSA 158
Query: 359 AYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS 403
A LG++ + ++ E R A L S
Sbjct: 159 ADALGEIGGERVRAAMEKLAETG--TGFARKVAVNYLETHKSLIS 201
Score = 93.1 bits (232), Expect = 4e-22
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 326 RALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP 385
R + ++ + D S ++ AY LG++ D A + L + L+D+ +
Sbjct: 2 RGSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DA 59
Query: 386 MVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 445
VR AA+ALG IGD+ ++ L K +D V ++ +AL +I
Sbjct: 60 WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI---------------- 103
Query: 446 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTE 498
D + L + L ++ED F+R A F L +I + L +
Sbjct: 104 ---------GDERAVEPLIKAL--KDEDWFVRIAAAFALGEIGDERAVEPLIK 145
Score = 86.2 bits (214), Expect = 9e-20
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 12 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDAN 71
+ LKD + R A L IG + A++ + +A DE ++ A+ LG++ D A
Sbjct: 83 KALKDEDGWV--RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV 140
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130
+ L + L+D+ + VR AA+ALG IG + + +EK A+ + L+ +
Sbjct: 141 EPLIKALKDE--DGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 197
Score = 77.4 bits (191), Expect = 1e-16
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 12 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDAN 71
+ LKD + R A L IG + A++ + +A DE ++ A LGQ+ D A
Sbjct: 52 KALKDEDAWV--RRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 109
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130
+ L + L+D+ + VR AA ALG IGD+ ++ L K +D V ++ AL I
Sbjct: 110 EPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 134 bits (340), Expect = 4e-37
Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 33/233 (14%)
Query: 26 RALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP 85
+A L+ ++ + D+S ++ AY LG++ D A + L + L+D ++
Sbjct: 9 KAAAPLR--ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDA 64
Query: 86 MVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 145
VR AA+ALG IGD+ ++ L K +D V ++ +AL +I
Sbjct: 65 WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG--------------- 109
Query: 146 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSS 205
D + L + L ++ED F+R A F L +I + L + L
Sbjct: 110 ----------DERAVEPLIKAL--KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDG 157
Query: 206 LYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYD 258
R A LG++ A+ E R L + +
Sbjct: 158 WVRQSAADALGEIGGERVRAAMEKLAET--GTGFARKVAVNYLETHKSFNHHH 208
Score = 129 bits (325), Expect = 5e-35
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 56/236 (23%)
Query: 195 ALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATP 254
+ L S R A+ LG++ + ++ L AL+D+ + VR A+ALG I
Sbjct: 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DAWVRRAAADALGQIGDE 80
Query: 255 ECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVL 314
+ L K L DE VRQS
Sbjct: 81 RAVEPLIKALKDEDGWVRQS---------------------------------------- 100
Query: 315 KDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDIL 374
A L IG + A++ + +A D+ ++ A+ LG++ D A + L
Sbjct: 101 ------------AAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPL 148
Query: 375 RQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 430
+ L+D+ + VR AA+ALG IG + + +EK A+ + L+ +
Sbjct: 149 IKALKDE--DGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202
Score = 113 bits (286), Expect = 2e-29
Identities = 55/226 (24%), Positives = 83/226 (36%), Gaps = 31/226 (13%)
Query: 67 DSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLAL 126
D + ++ + L+D S VR AA ALG IGD+ ++ L K +D V AL
Sbjct: 17 DPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL 74
Query: 127 KRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRD 186
+I G PL I LK +ED ++R A L
Sbjct: 75 GQI----------------GDERAVEPL-----IKALK------DEDGWVRQSAAVALGQ 107
Query: 187 INSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAE 246
I + L + L R AF LG++ + ++ L AL+D+ + VR A+
Sbjct: 108 IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE--DGWVRQSAAD 165
Query: 247 ALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQY 292
ALG I + K R+ L+ N +
Sbjct: 166 ALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHHHHH 211
Score = 97.4 bits (243), Expect = 2e-23
Identities = 47/244 (19%), Positives = 77/244 (31%), Gaps = 58/244 (23%)
Query: 156 DVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVL 215
D + + L +++ ++R A + L I + L + L + R A L
Sbjct: 17 DPEKVEMYIKNL--QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL 74
Query: 216 GQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSC 275
GQ+ + ++ L AL+D+ + VR A ALG I + L K L DE VR +
Sbjct: 75 GQIGDERAVEPLIKALKDE--DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAA 132
Query: 276 EIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG 335
AL ++ E + + + LKD + R A L IG
Sbjct: 133 AFAL-------------------GEIGDERAVEPLIKALKDEDGWV--RQSAADALGEIG 171
Query: 336 GKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEAL 395
G+ + ++ E R A L
Sbjct: 172 GERVR-------------------------------AAMEKLAET--GTGFARKVAVNYL 198
Query: 396 GAIG 399
Sbjct: 199 ETHK 202
Score = 89.0 bits (221), Expect = 2e-20
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 12 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDAN 71
+ LKD + R A L IG + A++ + +A DE ++ A+ LG++ D A
Sbjct: 88 KALKDEDGWV--RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV 145
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130
+ L + L+D+ + VR AA+ALG IG + + +EK A+ + L+ +
Sbjct: 146 EPLIKALKDE--DGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202
Score = 87.8 bits (218), Expect = 3e-20
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 23/186 (12%)
Query: 245 AEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPE 304
A A PE ++ K L D+ VR++ AL E +VE
Sbjct: 9 KAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE--------------- 53
Query: 305 EKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQ 364
LI + LKD + R A L IG + A++ + +A D+ ++ A LGQ
Sbjct: 54 ---PLI-KALKDEDAWV--RRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 107
Query: 365 MKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYL 424
+ D A + L + L+D+ + VR AA ALG IGD+ ++ L K +D V ++
Sbjct: 108 IGDERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 165
Query: 425 ALKRIQ 430
AL I
Sbjct: 166 ALGEIG 171
Score = 86.3 bits (214), Expect = 1e-19
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 31/173 (17%)
Query: 326 RALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP 385
+A L+ ++ + D S ++ AY LG++ D A + L + L+D ++
Sbjct: 9 KAAAPLR--ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDA 64
Query: 386 MVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 445
VR AA+ALG IGD+ ++ L K +D V ++ +AL +I
Sbjct: 65 WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG--------------- 109
Query: 446 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTE 498
D + L + L ++ED F+R A F L +I + L +
Sbjct: 110 ----------DERAVEPLIKAL--KDEDWFVRIAAAFALGEIGDERAVEPLIK 150
Score = 80.1 bits (198), Expect = 2e-17
Identities = 49/193 (25%), Positives = 69/193 (35%), Gaps = 30/193 (15%)
Query: 87 VRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYG 146
+ E A A D + + K QD V AL +I
Sbjct: 5 PQFEKA-AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIG---------------- 47
Query: 147 SVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSL 206
D + L + L ++ED ++R A L I + L + L
Sbjct: 48 ---------DERAVEPLIKAL--KDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96
Query: 207 YRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSD 266
R A LGQ+ + ++ L AL+D ++ VR A ALG I + L K L D
Sbjct: 97 VRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKD 154
Query: 267 EKVVVRQSCEIAL 279
E VRQS AL
Sbjct: 155 EDGWVRQSAADAL 167
Score = 78.2 bits (193), Expect = 8e-17
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 12 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDAN 71
+ LKD + R A L IG + A++ + +A DE ++ A LGQ+ D A
Sbjct: 57 KALKDEDAWV--RRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 114
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 130
+ L + L+D+ + VR AA ALG IGD+ ++ L K +D V ++ AL I
Sbjct: 115 EPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171
Score = 32.7 bits (75), Expect = 0.17
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLG 63
E + + + LKD + R A L IGG+ + + + + L
Sbjct: 142 ERAVEPLIKALKDEDGWV--RQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 199
Query: 64 QMKDSDAND 72
K + +
Sbjct: 200 THKSFNHHH 208
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 127 bits (322), Expect = 1e-33
Identities = 42/280 (15%), Positives = 81/280 (28%), Gaps = 31/280 (11%)
Query: 23 ERFRALFTLKNIG--GKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLED 80
++ +A K + D ++L + A L DA + + D
Sbjct: 6 QKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSD 65
Query: 81 KSQEPMVRHEAAEALGAIGDKSSIS------ILEKYAQDPVKEVSETCYLALKRI-QFVT 133
K+ + R A LG I + D V T + + +
Sbjct: 66 KN--YIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP 123
Query: 134 EEDKQKDTGNIYGSVDPTPP-----------LDDVSDINKLKEILLNENEDLFMRYKAMF 182
+ + + D + ++D + I L +L ++ + +R A F
Sbjct: 124 IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLL--KDPNGDVRNWAAF 181
Query: 183 KLR--DINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMV 240
+ ++ + E L + R E L ++ + L L+ V
Sbjct: 182 AININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NTV 237
Query: 241 RHECAEALGAIATPECYDVLRKYLSDEK-VVVRQSCEIAL 279
+ EA G + VL L + S L
Sbjct: 238 YDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKL 277
Score = 122 bits (309), Expect = 5e-32
Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 41/287 (14%)
Query: 173 DLFMRYKAM--FKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSA 230
+ + + KA + L + + L L +SL R A VL ++
Sbjct: 3 NTYQKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEF 62
Query: 231 LEDQTQNEMVRHECAEALGAIATPECYD------VLRKYLSDEKVVVRQSCEIALDMCDY 284
D+ N + R A LG I + + + L+D+ VR + +
Sbjct: 63 CSDK--NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK 120
Query: 285 ENSVELQY--------------------ADTLCKFKMIPEEKILLIGQVLKDSSKPLKER 324
+N + A + + I L+ +LKD + + R
Sbjct: 121 KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN--DKATIPLLINLLKDPNGDV--R 176
Query: 325 FRALFTL--KNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKS 382
A F + C E DK+ ++ E L KD +L L+
Sbjct: 177 NWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK-- 234
Query: 383 QEPMVRHEAAEALGAIGDKSSISILEKYAQD-PVKEVSETCYLALKR 428
V + EA G +GDK+ + +L+ E+ + LKR
Sbjct: 235 --NTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279
Score = 108 bits (272), Expect = 7e-27
Identities = 50/347 (14%), Positives = 98/347 (28%), Gaps = 88/347 (25%)
Query: 58 LAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKE 117
Y L +D L ++L+D + + R +A L G + ++ + ++ D
Sbjct: 12 KEYGLYNQCKKLNDDELFRLLDDHN--SLKRISSARVLQLRGGQDAVRLAIEFCSDKNYI 69
Query: 118 VSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMR 177
+ L +I N L + LN+ + +R
Sbjct: 70 RRDIGAFILGQI----------------KICKKCEDN----VFNILNNMALND-KSACVR 108
Query: 178 YKA------MFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSAL 231
A K I S + S+ R AF + + + ++IP L + L
Sbjct: 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLL 168
Query: 232 EDQTQNEMVRHECAEALG--AIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVE 289
+D N VR+ A A+ + D + L D+ VR
Sbjct: 169 KD--PNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRI---------------- 210
Query: 290 LQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFAD 349
A+ L K + + +
Sbjct: 211 ------------------------------------EAIIGLSYRKDKRVLSVLCDELKK 234
Query: 350 KSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALG 396
+ + ++ G++ D +L +L + + A + L
Sbjct: 235 NT--VYDDIIEAAGELGDKTLLPVLDTMLYK-FDDNEIITSAIDKLK 278
Score = 99.5 bits (248), Expect = 1e-23
Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 29/233 (12%)
Query: 208 RHEIAFVLGQMQNPS--SIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLS 265
+ + + G + L L+D N + R A L + + ++ S
Sbjct: 7 KRKASKEYGLYNQCKKLNDDELFRLLDDH--NSLKRISSARVLQLRGGQDAVRLAIEFCS 64
Query: 266 DEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERF 325
D+ + R L E +L L D S + R
Sbjct: 65 DKNYIRRDIGAFILGQIKICKKCE-------------DNVFNILNNMALNDKSACV--RA 109
Query: 326 RALFTLKNIGG------KTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLE 379
A+ + ++ DKS ++ A+ + + D +L +L+
Sbjct: 110 TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK 169
Query: 380 DKSQEPMVRHEAAEALG--AIGDKSSISILEKYAQDPVKEVSETCYLALKRIQ 430
D + VR+ AA A+ + + QD +EV + L +
Sbjct: 170 DPN--GDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220
Score = 51.3 bits (123), Expect = 2e-07
Identities = 12/93 (12%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 4 EEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLG 63
+ ++L+D ++ + R A+ L K + + + + + ++ G
Sbjct: 191 SDIRDCFVEMLQDKNEEV--RIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAG 246
Query: 64 QMKDSDANDILRQVLEDKSQEPMVRHEAAEALG 96
++ D +L +L + + A + L
Sbjct: 247 ELGDKTLLPVLDTMLYK-FDDNEIITSAIDKLK 278
Score = 49.8 bits (119), Expect = 8e-07
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 358 LAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKE 417
Y L +D L ++L+D + + R +A L G + ++ + ++ D
Sbjct: 12 KEYGLYNQCKKLNDDELFRLLDDHN--SLKRISSARVLQLRGGQDAVRLAIEFCSDKNYI 69
Query: 418 VSETCYLALKRIQFVTEED 436
+ L +I+ + +
Sbjct: 70 RRDIGAFILGQIKICKKCE 88
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 93.9 bits (234), Expect = 4e-23
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 154 LDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAF 213
S + + +E+ ++R L + E+ L E LS+ R A+
Sbjct: 8 HHHSSGLVPRGSHM--ADENKWVRRDVSTALSRMGD-EAFEPLLESLSNEDWRIRGAAAW 64
Query: 214 VLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQ 273
++G Q+ ++ L LED + VR A +L I + K R+
Sbjct: 65 IIGNFQDERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARK 122
Query: 274 SCEIALDM 281
L+
Sbjct: 123 VAVNYLET 130
Score = 84.3 bits (209), Expect = 1e-19
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 12 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDAN 71
+ D +K + R L +G + A + + E+ ++E ++ A+ +G +D A
Sbjct: 19 SHMADENKWV--RRDVSTALSRMGDE-AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAV 75
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLAL 126
+ L ++LED S VR AA +L IG + + +EK A+ + L
Sbjct: 76 EPLIKLLEDDS--GFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 128
Score = 83.1 bits (206), Expect = 2e-19
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 312 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDAN 371
+ D +K + R L +G + A + + E+ +++ ++ A+ +G +D A
Sbjct: 19 SHMADENKWV--RRDVSTALSRMGDE-AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAV 75
Query: 372 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLAL 426
+ L ++LED S VR AA +L IG + + +EK A+ + L
Sbjct: 76 EPLIKLLEDDS--GFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 128
Score = 68.1 bits (167), Expect = 4e-14
Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 57/186 (30%)
Query: 211 IAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVV 270
+ + S + S + D+ N+ VR + + AL + E ++ L + LS+E
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMADE--NKWVRRDVSTALSRMG-DEAFEPLLESLSNEDWR 57
Query: 271 VRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFT 330
+R A +
Sbjct: 58 IR----------------------------------------------------GAAAWI 65
Query: 331 LKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHE 390
+ N + A++ + + D S ++ A L Q+ + ++ E R
Sbjct: 66 IGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETG--TGFARKV 123
Query: 391 AAEALG 396
A L
Sbjct: 124 AVNYLE 129
Score = 59.6 bits (145), Expect = 4e-11
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 1 MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAY 60
+ +E + + L + + R A + + N + A++ + + D+S ++ A
Sbjct: 38 RMGDEAFEPLLESLSNEDWRI--RGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAAR 95
Query: 61 CLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALG 96
L Q+ + ++ E R A L
Sbjct: 96 SLEQIGGERVRAAMEKLAETG--TGFARKVAVNYLE 129
Score = 56.5 bits (137), Expect = 5e-10
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 30 TLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRH 89
+ + + + ADE+ ++ +++ L +M D +A + L + L ++ +R
Sbjct: 4 SHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-EAFEPLLESLSNED--WRIRG 60
Query: 90 EAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 129
AA +G D+ ++ L K +D V +L++I
Sbjct: 61 AAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 54.6 bits (132), Expect = 2e-09
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 330 TLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRH 389
+ + + + AD++ ++ +++ L +M D +A + L + L ++ +R
Sbjct: 4 SHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-EAFEPLLESLSNED--WRIRG 60
Query: 390 EAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRI 429
AA +G D+ ++ L K +D V +L++I
Sbjct: 61 AAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 52.3 bits (126), Expect = 2e-08
Identities = 24/192 (12%), Positives = 44/192 (22%), Gaps = 63/192 (32%)
Query: 58 LAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKE 117
+ S + D + VR + + AL +GD+ + L + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAD--ENKWVRRDVSTALSRMGDE-AFEPLLESLSNEDWR 57
Query: 118 VSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMR 177
+ + Q D + L ++L E++ F+R
Sbjct: 58 IRGAAAWIIGNFQ-------------------------DERAVEPLIKLL--EDDSGFVR 90
Query: 178 YKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQN 237
A A L Q+ A+ E
Sbjct: 91 SGA-------------------------------ARSLEQIGGERVRAAMEKLAET--GT 117
Query: 238 EMVRHECAEALG 249
R L
Sbjct: 118 GFARKVAVNYLE 129
Score = 40.7 bits (96), Expect = 1e-04
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 358 LAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKE 417
+ S + D + VR + + AL +GD+ + L + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAD--ENKWVRRDVSTALSRMGDE-AFEPLLESLSNEDWR 57
Query: 418 VSETCYLALKRIQ 430
+ + Q
Sbjct: 58 IRGAAAWIIGNFQ 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 4e-13
Identities = 76/532 (14%), Positives = 150/532 (28%), Gaps = 180/532 (33%)
Query: 56 HELAYCLGQM----------------KDSDANDI---LRQVLEDKS-----QEPMVRHEA 91
H + + G+ + D D+ + +L +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 92 AEALGAIGDKSSISILEKYAQDPVKEVSETCYLALK-RIQFVTEEDKQKDT--------- 141
+ K +++K+ V+EV Y L I+ E +Q
Sbjct: 65 LRLFWTLLSKQE-EMVQKF----VEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQR 116
Query: 142 GNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV---------ES 192
+Y +VS + ++ R +A+ +LR +V ++
Sbjct: 117 DRLYNDNQVFAKY-NVSRLQPYLKL----------R-QALLELRPAKNVLIDGVLGSGKT 164
Query: 193 TLALTEGLSHG------------SSLYRHEIAFVLGQMQN-PSSIPALTSALEDQTQNEM 239
+AL LS+ + + VL +Q I ++ D + N
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 240 VRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF 299
+R LR+ L + ++C + L + +N+ + C
Sbjct: 225 LRIH-----------SIQAELRRLLKSKP---YENCLLVLL--NVQNAKAWNAFNLSC-- 266
Query: 300 KMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHE-- 357
KILL RF+ + + T + + L E
Sbjct: 267 ------KILLT------------TRFKQVTDF--LSAATTTHISLDHHSM--TLTPDEVK 304
Query: 358 --LAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG-----DKSSISILEKY 410
L L + D L + E + P L I ++ +
Sbjct: 305 SLLLKYLD-CRPQD----LPR--EVLTTNPR-------RLSIIAESIRDGLATWDNWKHV 350
Query: 411 AQDPVKEVSETCYLALKRIQFVTEEDKQ---------KDTGNIYGSVDPTPPL------- 454
D + + E+ L+ E ++ +I PT L
Sbjct: 351 NCDKLTTIIESSLNVLE-----PAEYRKMFDRLSVFPPSA-HI-----PTILLSLIWFDV 399
Query: 455 --DDVSDI-NKL-KEILLNENE--------DLFMRYKAMFKLRDINSVESTL 494
DV + NKL K L+ + +++ K KL + ++ ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV--KLENEYALHRSI 449
Score = 60.3 bits (145), Expect = 1e-09
Identities = 73/548 (13%), Positives = 164/548 (29%), Gaps = 152/548 (27%)
Query: 10 IGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSD 69
+ +VL+ + K L + ++ + I+ + D K+ + Q
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLK- 139
Query: 70 ANDILRQVL-EDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKR 128
LRQ L E + + ++ + G K+ + + C
Sbjct: 140 ----LRQALLELRPAKNVLID----GVLGSG-KTWV-------------ALDVCL----- 172
Query: 129 IQFVTEEDKQKDTGNIY----GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKL 184
+ + + K I+ + + + + L+++L + + R +
Sbjct: 173 ----SYKVQCKMDFKIFWLNLKNCN-----SPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 185 R-DINSVESTLA-LTEGLSHGSSLYRHEIAFVLGQMQNPSSIPA--------LTS---AL 231
+ I+S+++ L L + + + L VL +QN + A LT+ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCL------LVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 232 EDQTQNEMVRHECAEALGAIATP-ECYDVLRKYLS-DEKVVVRQSCEI---ALDMCDYEN 286
D H + TP E +L KYL + + R+ L +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---- 333
Query: 287 SVELQ-YADTLCKFKMIPEEKILLIGQVLKDSSKP--LKERFRALFTLK---NIGGKT-- 338
+ ++ T +K + +K+ I + + +P ++ F L +I
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 339 ---------AIQCISEAFADKSALLKH--ELAYCLGQMKDSDANDILRQVLEDKSQEPMV 387
+ + S + K E + I ++ E +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--------PSIYLELKVKLENEYAL 445
Query: 388 RHEAAEALGAIGDKSSISILEKYA-------QDPVKEVSET---CYLA--LKRIQ----- 430
H SI++ Y D + + ++ LK I+
Sbjct: 446 -HR--------------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 431 -----------FVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYK 479
F+ E K + + + L+ + + K + +N+ + R
Sbjct: 491 TLFRMVFLDFRFL--EQKIRHDSTAWNA--SGSILNTLQQLKFYKP-YICDNDPKYERL- 544
Query: 480 AMFKLRDI 487
+ I
Sbjct: 545 ----VNAI 548
Score = 47.9 bits (113), Expect = 6e-06
Identities = 49/314 (15%), Positives = 98/314 (31%), Gaps = 67/314 (21%)
Query: 207 YRHEIAFVLGQMQ--NPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDV---LR 261
+ H + F G+ Q + A + +C DV +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAF-------------------VDNFDCKDVQDMPK 43
Query: 262 KYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKI-LLIGQVLKDSSKP 320
LS E+ + + D + + TL EE + + +VL+ + K
Sbjct: 44 SILSKEE------IDHIIMSKDAVSGTLRLF-WTLLSK---QEEMVQKFVEEVLRINYKF 93
Query: 321 LKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVL-E 379
L + ++ + I+ + D K+ + Q LRQ L E
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLK-----LRQALLE 146
Query: 380 DKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEV--SETCYLALKRIQFVTEEDK 437
+ + ++ + G K+ + L+ V+ + +L LK + E
Sbjct: 147 LRPAKNVLID----GVLGSG-KTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETV 198
Query: 438 QKDTGNIYGSVDP--TPPLDDVSDINKLKEILLNENEDLFM--RYK-AMFKLRDINSVES 492
+ + +DP T D S+I + E L Y+ + L ++ + ++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 493 ---------TLALT 497
L T
Sbjct: 259 WNAFNLSCKILLTT 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 55.2 bits (132), Expect = 3e-08
Identities = 54/306 (17%), Positives = 107/306 (34%), Gaps = 46/306 (15%)
Query: 169 NENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIA---FVLGQMQNPS--- 222
+N F ++ + N +E + L + R + LG +
Sbjct: 370 AQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD 429
Query: 223 SIPALTSALED------QTQNEMVRHECAEALGAI----ATPECYDVLRKYLSDEKVVVR 272
+ L + + + +++ H + +G A E Y+ L++ L ++
Sbjct: 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSG 489
Query: 273 QSCEIALDMC-------------------DYENSVELQYADTLCKFKMIPEEKILLIGQV 313
++ + + +C ++ A L +E +
Sbjct: 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITK 549
Query: 314 LKDSSKPLKERFRALFTL----KNIGGKTAIQ-CISEAFADKSALLKHELAYCLGQMKDS 368
+ S + L R+ FT+ G +A++ + A +D + ++ LG +
Sbjct: 550 MLASDESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608
Query: 369 DANDILRQV-LEDKSQEPMVRHEAAEALGAI----GDKSSISILEKYAQDPVKEVSETCY 423
D + R V L KS VR A ALG G +S+I +L+ +DPV V +
Sbjct: 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668
Query: 424 LALKRI 429
+AL I
Sbjct: 669 IALSMI 674
Score = 43.7 bits (102), Expect = 1e-04
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 4 EEKILLIGQVLKDSSKPLKERFRALFTL----KNIGGKTAIQ-CISEAFADESALLKHEL 58
+E + + S + L R+ FT+ G +A++ + A +D + ++
Sbjct: 540 QELADDLITKMLASDESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAA 598
Query: 59 AYCLGQMKDSDANDILRQV-LEDKSQEPMVRHEAAEALGAI----GDKSSISILEKYAQD 113
LG + D + R V L KS VR A ALG G +S+I +L+ +D
Sbjct: 599 VIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD 658
Query: 114 PVKEVSETCYLALKRI 129
PV V + +AL I
Sbjct: 659 PVDFVRQAAMIALSMI 674
Score = 35.9 bits (82), Expect = 0.035
Identities = 49/375 (13%), Positives = 96/375 (25%), Gaps = 84/375 (22%)
Query: 44 SEAFADESALLKHELAYCLGQMKDSDANDILRQVLED------KSQEPMVRHEAAEALGA 97
S F +L L Y D D L+ ++ + ++ H A+ +G
Sbjct: 407 SSRFIKGGSLYGLGLIYA---GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463
Query: 98 IG----DKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPP 153
+ L++ + E L + G+ P
Sbjct: 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCML--------------GTGKPEA- 508
Query: 154 LDDVSDINKLKEILLNENEDLFMRYKAM----FKLRDINSVESTLALTEGLSHGSSLYRH 209
I+ + R A+ + + Y
Sbjct: 509 ------IHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGG 562
Query: 210 EIAFVLGQMQNPSSI---PALTSALEDQTQNEMVRHECAEALGAIATPE---CYDVLRKY 263
L ++ L A+ D N+ VR ALG + + +++
Sbjct: 563 AFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620
Query: 264 LSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKE 323
VR AL + ++ I ++ + KD +
Sbjct: 621 SKSHNAHVRCGTAFALGIACAGKGLQ---------------SAIDVLDPLTKDPVDFV-- 663
Query: 324 RFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQ 383
R A+ L I + + + + K+ V+ +K Q
Sbjct: 664 RQAAMIALSMILIQQTEKLN----PQVADINKN-----------------FLSVITNKHQ 702
Query: 384 EPMVRHEAAEALGAI 398
E + + A A G +
Sbjct: 703 EGLAKFGACVAQGIM 717
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 52.3 bits (125), Expect = 3e-07
Identities = 73/444 (16%), Positives = 124/444 (27%), Gaps = 78/444 (17%)
Query: 40 IQCISEAFADESALLKHELAYCLGQMKDSDAND--------ILRQVLEDKSQEPMVRHEA 91
Q +D++ +++ A LG+ D + + D+ VR A
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS--VRLLA 223
Query: 92 AEALGAIGDKSS--------ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDT-- 141
EA I + L + A+D V +Q + K
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283
Query: 142 GNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLS 201
+ + +K+KE N + D L + E +S
Sbjct: 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP---------CIKELVS 334
Query: 202 HGSSLYR-------HEIAFVLG-QMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT 253
+ + ++ +LG +P + L+D+ VR L +
Sbjct: 335 DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPE--VRLNIISNLDCVNE 392
Query: 254 PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF-KMIPEEKIL---- 308
L + L I D + V L + + + E
Sbjct: 393 VIGIRQLSQSLLPA---------IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443
Query: 309 -LIGQVLKDSSKPLKERFRALFTLKNIGGKTA--------IQCISEAFADKSALLKHELA 359
L L D + R A LK + K I + D + L +
Sbjct: 444 SLCMAWLVDHVYAI--REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL 501
Query: 360 YCLGQM-----KDSDANDILRQVLED-KSQEPMVRHEAAEALGAIGDKSS--------IS 405
+C+ + +D +L VL VR A++L IG
Sbjct: 502 FCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKP 561
Query: 406 ILEKYAQDPVKEVSETCYLALKRI 429
ILEK QD +V AL +
Sbjct: 562 ILEKLTQDQDVDVKYFAQEALTVL 585
Score = 48.1 bits (114), Expect = 4e-06
Identities = 54/404 (13%), Positives = 122/404 (30%), Gaps = 71/404 (17%)
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKY--------AQDPVKEVSETCY 123
L + + E +VR +A E+L AI + S S LE + A +
Sbjct: 90 PPLESLATVE--ETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSAC 147
Query: 124 LALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFK 183
+ + + ++ DD + + L K
Sbjct: 148 GLFSVCYPRVSSAVKAELRQYFRNLCS----DDTPMVRRAAASKL----------GEFAK 193
Query: 184 LRDINSVESTL--ALTEGLSHGSSLYRHEIAFVLGQM--------QNPSSIPALTSALED 233
+ ++++V+S + + S R + +P L A ED
Sbjct: 194 VLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAED 253
Query: 234 QTQNEMVRHECAEALGAIA--------TPECYDVLRKYLSDEKVVVRQSCEIALDMCDYE 285
++ VR+ A+ + + + + D + VR + +
Sbjct: 254 --KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF--- 308
Query: 286 NSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFT--LKNIGGKTAIQ-- 341
+ C+ +I + + I +++ D+++ +K ++ +G I+
Sbjct: 309 ----CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364
Query: 342 --CISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLE------DKSQEPMVRHEAAE 393
D+ ++ + L + + L Q L + + VR E
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424
Query: 394 ALGAIGDKSS--------ISILEKYAQDPVKEVSETCYLALKRI 429
+ + + S+ + D V + E LK++
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKL 468
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 49.7 bits (118), Expect = 6e-07
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 43/234 (18%)
Query: 220 NPSSIPALTSALEDQTQNEMVRHECAEALGAIAT--PECYDVLRKYL-----SDEKVVVR 272
+ S + L L+D V + IA + Y+ + K L E + +
Sbjct: 30 DESVLKKLIELLDDD--LWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLT 87
Query: 273 QSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLK 332
Q A E ++ MIP ++ + + K + L+
Sbjct: 88 QEIAKAFGQMAKEKPELVK--------SMIP-----VLFANYRIGDEKTKIN--VSYALE 132
Query: 333 NIGG------KTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDI------LRQVLED 380
I + ++ + K+ K + M ++ + + +L D
Sbjct: 133 EIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHD 192
Query: 381 KSQEPMVRHEAAEALGAIGDKSS-----ISILEKYAQDPVKEVSETCYLALKRI 429
+VR A EAL + + + + D V++T + R+
Sbjct: 193 GD--EIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRL 244
Score = 43.2 bits (101), Expect = 1e-04
Identities = 29/244 (11%), Positives = 70/244 (28%), Gaps = 43/244 (17%)
Query: 37 KTAIQCISEAFADESALLKHELAYCLGQMKDS------DANDILRQVLEDKSQEPMVRHE 90
++ ++ + E D+ + + + + L +L+ S+ + E
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-SEAIPLTQE 89
Query: 91 AAEALGAIGD------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNI 144
A+A G + KS I +L + ++ AL+ I
Sbjct: 90 IAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--------- 140
Query: 145 YGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTL------ALTE 198
+ + +L ++N + + A+ + + +
Sbjct: 141 --LMASI--------VRDFMSMLSSKNRED--KLTALNFIEAMGENSFKYVNPFLPRIIN 188
Query: 199 GLSHGSSLYRHEIAFVLGQM--QNPSSIPALTSALED-QTQNEMVRHECAEALGAIATPE 255
L G + R L + N + LE+ + +V E + + E
Sbjct: 189 LLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLE 248
Query: 256 CYDV 259
+
Sbjct: 249 GHSS 252
Score = 38.9 bits (90), Expect = 0.002
Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 49/237 (20%)
Query: 230 ALEDQTQNEMVRHECAEALGAIAT-----PECYDVLRKYLSDEKVVVRQSCEIALDMCDY 284
++E++ + E L I L + L D+ V ++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNA--------- 52
Query: 285 ENSVELQYADTLCKFKMIPEEKIL-----LIGQVLKDSSKPLKERFRALFTLKNIG---- 335
+ E+ L + K + PL +
Sbjct: 53 --------ISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPL--TQEIAKAFGQMAKEKP 102
Query: 336 --GKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDI------LRQVLEDKSQEPMV 387
K+ I + + K ++Y L ++ ++ + +L K++E
Sbjct: 103 ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNRE--D 160
Query: 388 RHEAAEALGAIGDKSSISI------LEKYAQDPVKEVSETCYLALKRIQFVTEEDKQ 438
+ A + A+G+ S + + D + V + AL + + ++ ++
Sbjct: 161 KLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217
Score = 36.2 bits (83), Expect = 0.016
Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 21/140 (15%)
Query: 7 ILLIGQVLKDSSKPLKERFRALFTLKNIGG------KTAIQCISEAFADESALLKHELAY 60
I ++ + + K + L+ I + ++ + ++ K
Sbjct: 109 IPVLFANYRIGDEKTKIN--VSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALN 166
Query: 61 CLGQMKDSDANDI------LRQVLEDKSQEPMVRHEAAEALGAIGDKSS-----ISILEK 109
+ M ++ + + +L D +VR A EAL + + + +
Sbjct: 167 FIEAMGENSFKYVNPFLPRIINLLHDGD--EIVRASAVEALVHLATLNDKLRKVVIKRLE 224
Query: 110 YAQDPVKEVSETCYLALKRI 129
D V++T + R+
Sbjct: 225 ELNDTSSLVNKTVKEGISRL 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 2e-06
Identities = 69/433 (15%), Positives = 130/433 (30%), Gaps = 132/433 (30%)
Query: 85 PMVRHEAAEALGAIGDKSSISILEKYAQD--PVKEVSETCYLALKRIQFVTEEDKQKDTG 142
P A L +K E +A D P L K + +V+ + G
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE----LVGKFLGYVSSLVEPSKVG 78
Query: 143 NIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSH 202
D V L + L E E+ ++ DI+++ + L +
Sbjct: 79 ----------QFDQV-----LN-LCLTEFENCYLEGN------DIHALAAKL---LQEND 113
Query: 203 GSSLYRHEI--AFV--LGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAI-----AT 253
+ + E+ ++ + P + SAL + L AI T
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKS-NSALFRAVGEGNAQ------LVAIFGGQGNT 166
Query: 254 PECYDVLRK----YLSDEKVVVRQSCEIALDMCDYENSVELQYADT------LCKFKMIP 303
+ ++ LR Y +++ S E ++ E + L P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 304 EEKIL--------LIG-----------QVLKDSSKPLKERFRALFT-LKNIGGKTAIQCI 343
++ L LIG ++L + L+ + + + TA+ I
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAV-AI 283
Query: 344 S-----EAFAD--KSALLKHELAYCLGQMKDSDANDILR--QVLEDKSQEPMVRHEAAEA 394
+ E+F + A+ + + +G +R + + S P + ++ E
Sbjct: 284 AETDSWESFFVSVRKAI---TVLFFIG----------VRCYEAYPNTSLPPSILEDSLE- 329
Query: 395 LGAIGDKS---SISILEKYA-QDPVKEV------SETCYLALK--RIQFVTEEDKQKDTG 442
G S SIS L + QD V + + ++L V +G
Sbjct: 330 -NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-------SG 381
Query: 443 NIYGSVDPTPPLD 455
PP
Sbjct: 382 ---------PPQS 385
Score = 44.7 bits (105), Expect = 7e-05
Identities = 49/238 (20%), Positives = 77/238 (32%), Gaps = 81/238 (34%)
Query: 192 STLALTEGLSHGSSLYRHEI------AFVLGQMQN--PSSIPALTSAL----EDQTQNEM 239
ST LT LSHGS H + F+ Q+Q +P T E T E+
Sbjct: 5 STRPLT--LSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 240 VRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF 299
V + LG Y+S V S D L L +F
Sbjct: 61 V----GKFLG-------------YVSSL---VEPSKVGQFDQV-------LNLC--LTEF 91
Query: 300 KMIPEEKIL-------LIGQVLKDSSKPL---KERFRALFTLKNIGGKTAIQCISEAFAD 349
E L L ++L+++ L KE + T + + + + +
Sbjct: 92 ----ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN----- 142
Query: 350 KSALLKHELA-----YCL--GQMKDSDANDILRQVLED--KSQEPMVR---HEAAEAL 395
SAL + + GQ + +D + L D ++ +V +AE L
Sbjct: 143 -SALFRAVGEGNAQLVAIFGGQ---GNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETL 195
Score = 37.3 bits (86), Expect = 0.012
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 28/112 (25%)
Query: 385 PMVRHEAAEALGAIGDKSSISILEKYAQD--PVKEVSETCYLALKRIQFVTEEDKQKDTG 442
P A L +K E +A D P L K + +V+ + G
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE----LVGKFLGYVSSLVEPSKVG 78
Query: 443 NIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTL 494
D V L + L E E+ ++ DI+++ + L
Sbjct: 79 ----------QFDQV-----LN-LCLTEFENCYLEGN------DIHALAAKL 108
Score = 32.3 bits (73), Expect = 0.49
Identities = 33/206 (16%), Positives = 65/206 (31%), Gaps = 84/206 (40%)
Query: 27 ALFT--------LKNIGGK--------------TAIQCISEAFADESALLKHELAYCLGQ 64
AL LK+ G A+ +++ + ES + E+ + G
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV---EVVFYRGM 1791
Query: 65 MKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYL 124
Q + R E + + + + ++Q+ ++ V E
Sbjct: 1792 T----------------MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER--- 1832
Query: 125 ALKRIQFVTE------EDKQKDTGNIY---GSVDPTPPLDDVSDINKLKEILLNENEDLF 175
KR ++ E E++Q Y G D+ ++ + + LN
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQ------YVAAG---------DLRALDTVTNV-LNFI---- 1872
Query: 176 MRYKAMFKLRDINSVESTLALTEGLS 201
KL+ I+ +E L + LS
Sbjct: 1873 -------KLQKIDIIE----LQKSLS 1887
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 37.2 bits (85), Expect = 0.014
Identities = 57/483 (11%), Positives = 125/483 (25%), Gaps = 103/483 (21%)
Query: 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCL 62
++ + +VL + R A +KN + + +K +
Sbjct: 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKN------------SLTSKDPDIKAQYQQRW 80
Query: 63 GQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS--------ISILEKYAQDP 114
+ + ++ VL E A++ + I I L +P
Sbjct: 81 LAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140
Query: 115 VKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL 174
L+ I ++ ++ +++ + + + + E
Sbjct: 141 -NSTEHMKESTLEAIGYICQD---------IDPEQLQDKSNEI--LTAIIQGMRKEEPSN 188
Query: 175 FMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQ 234
++ A L + + F S + + +
Sbjct: 189 NVKLAATNALLNS-----------------------LEFTKANFDKESERHFIMQVVCEA 225
Query: 235 T--QNEMVRHECAEALGAIATPECYDVLRKYL-------------SDEKVVVRQSCEIAL 279
T + VR + L I + Y + Y+ SD V Q E
Sbjct: 226 TQCPDTRVRVAALQNLVKIMS-LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284
Query: 280 DMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLK-------------------DSSKP 320
++CD E + ++ ++ + + L+ D P
Sbjct: 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 344
Query: 321 LKERFRALFTLKNIGGK----TAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQ 376
K L L + I E + + G + + L+
Sbjct: 345 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404
Query: 377 VLED---------KSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALK 427
++ K +VR AA +G I + + + P+ + A
Sbjct: 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEP 464
Query: 428 RIQ 430
R+
Sbjct: 465 RVA 467
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 35.0 bits (80), Expect = 0.059
Identities = 49/419 (11%), Positives = 122/419 (29%), Gaps = 63/419 (15%)
Query: 65 MKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYL 124
++ + + +L + L + + S L A + +
Sbjct: 272 VRLAGGLQKMVALL--NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL------ 323
Query: 125 ALKRIQFVTEEDKQKDT----GNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 180
+ ++ T E T + P + + + L L + ++ +
Sbjct: 324 -VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR--LVQNC 380
Query: 181 MFKLRDINSVESTLALTEG--------LSHGSSLYRHEIAFVLGQ-----------MQNP 221
++ LR+++ + EG L A +L +
Sbjct: 381 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440
Query: 222 SSIPALTSALEDQTQNEMVRHECAEALGAIAT-PECYDVLRKYLSDEKVVVRQSCEIALD 280
I AL + E + AL + + + ++ + + + + +
Sbjct: 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL-----PVVVK 495
Query: 281 MCDYENSVELQYADT--LCKFKMIPEEKILLIG--------QVLKDSSKPLKERFRALFT 330
+ + L A + + P L Q+L + + + R T
Sbjct: 496 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555
Query: 331 LKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHE 390
+ ++ I EA +L ++ + ++ + + Q+L + ++
Sbjct: 556 QQQFVEGVRMEEIVEACTGALHILARDIHNRI-VIRGLNTIPLFVQLLYSPIEN--IQRV 612
Query: 391 AAEALG----------AIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQK 439
AA L AI + + + L + + V+ L R+ +D +K
Sbjct: 613 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 671
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 34.5 bits (79), Expect = 0.076
Identities = 56/505 (11%), Positives = 132/505 (26%), Gaps = 91/505 (18%)
Query: 16 DSSKPLKERFRALFTLKNIGGKT----------AIQCISEAFADESALLKHELAYCLGQM 65
++ ++ TL N+ I + + + L +
Sbjct: 66 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 125
Query: 66 KDSDAN-----------DILRQVLEDKSQEPMVRHEAAEALGAI---GDKSSISILEKYA 111
+ +L + L + +S + IL
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALL--NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183
Query: 112 QDPVKEVSETCYLALKRIQFVTEEDKQKDT----GNIYGSVDPTPPLDDVSDINKLKEIL 167
+ + ++ T E T + P + + + L L
Sbjct: 184 PQAL----------VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233
Query: 168 LNENEDLFMRYKAMFKLRDINSVESTLALTEG--------LSHGSSLYRHEIAFVLG--- 216
+ ++ + ++ LR+++ + EG L A +L
Sbjct: 234 TDPSQR--LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291
Query: 217 --------QMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT-PECYDVLRKYLSDE 267
+ I AL + E + AL + + + ++ + +
Sbjct: 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 351
Query: 268 KVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQ--------VLKDSSK 319
+ + L + + + P L Q +L + +
Sbjct: 352 YGL---PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 408
Query: 320 PLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLE 379
+ R T + ++ I E +L + ++ + + Q+L
Sbjct: 409 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLY 467
Query: 380 DKSQEPMVRHEAAEALG----------AIGDKSSISILEKYAQDPVKEVSETCYLALKRI 429
+ ++ AA L AI + + + L + + V+ L R+
Sbjct: 468 SPIEN--IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525
Query: 430 QFVTEEDKQKDTGNIYGSVDPTPPL 454
+D +K SV+ T L
Sbjct: 526 SEDKPQDYKK-----RLSVELTSSL 545
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 34.4 bits (78), Expect = 0.091
Identities = 64/463 (13%), Positives = 125/463 (26%), Gaps = 94/463 (20%)
Query: 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCL 62
+ L QVL D + L+ R A TLKN + +S + +
Sbjct: 37 FLQFAGLSSQVLIDENTKLEGRILAALTLKNE-----------LVSKDSVKTQQFAQRWI 85
Query: 63 GQMKDSDANDILRQVLED-KSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSET 121
Q+ N I L S EP + + AA+ + AI I + +
Sbjct: 86 TQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA---DIELPHGAWPEL------- 135
Query: 122 CYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 181
++ + + + N+ + + + E +++ L +
Sbjct: 136 -------MKIMVDNTGAEQPENVKRASLLA--------LGYMCESADPQSQALVSSSNNI 180
Query: 182 FK------LRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQT 235
S LA L+ + F+ M+ L + + T
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALAD-------SLIFIKNNMEREGERNYLMQVVCEAT 233
Query: 236 Q--NEMVRHECAEALGAIATPECYDVLRKYL-------------SDEKVVVRQSCEIALD 280
Q + V+ L I + + Y ++ Y+ S V + E
Sbjct: 234 QAEDIEVQAAAFGCLCKIMS-KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292
Query: 281 MCDYENSVELQYAD------TLCKFKMIPEEKILLIGQVLK---------DSSKPLKERF 325
+C+ E + + A F + + ++ L D
Sbjct: 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAG 352
Query: 326 RALFTLKNIGGKTAI----QCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLED- 380
L G + + + + + + G + D +
Sbjct: 353 ACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA 412
Query: 381 --------KSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPV 415
Q V+ A +G I D + SI + V
Sbjct: 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 33.5 bits (76), Expect = 0.11
Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 44/215 (20%)
Query: 225 PALTSALEDQTQNEMVRHECAEALGAIAT----------PECYDVLRKYLSDEK--VVVR 272
LE++ +R E E L + T L+K ++ + V+V
Sbjct: 18 KDFYDKLEEK--KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVA 75
Query: 273 QSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFR-ALFTL 331
+ + + YA + + + K+ + R A+ +
Sbjct: 76 MAGKCLALLAKGLAKRFSNYASAC----------VPSLLEKFKEKKPNVVTALREAIDAI 125
Query: 332 -KNIGGKTAIQCISEAFADKSALLKHE----LAYCLGQMKDSDAN--------DILRQVL 378
+ + + I E+ ++K+ +K E +A L + + + N L + L
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 379 EDKSQEPMVRHEAAEALGAI----GDKSSISILEK 409
+ P VR +AEALG + GDK+ +L
Sbjct: 186 NEPD--PTVRDSSAEALGTLIKLMGDKAVTPLLAD 218
Score = 31.1 bits (70), Expect = 0.63
Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 33/178 (18%)
Query: 312 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDS--- 368
++ + K L + L + + + E F +K + L + + S
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 369 -DANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS------------ISILEKYAQDPV 415
+ + + L +K+ P V+ E A + ++ + L K +P
Sbjct: 132 EAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189
Query: 416 KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED 473
V ++ AL G + + ++D++ LK + E ++
Sbjct: 190 PTVRDSSAEAL---------------GTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
Score = 29.6 bits (66), Expect = 1.8
Identities = 24/178 (13%), Positives = 58/178 (32%), Gaps = 33/178 (18%)
Query: 12 QVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDS--- 68
++ + K L + L + + + E F ++ + L + + S
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 69 -DANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS------------ISILEKYAQDPV 115
+ + + L +K+ P V+ E A + ++ + L K +P
Sbjct: 132 EAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189
Query: 116 KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED 173
V ++ AL G + + ++D++ LK + E ++
Sbjct: 190 PTVRDSSAEAL---------------GTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
Score = 29.6 bits (66), Expect = 1.9
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 20/118 (16%)
Query: 10 IGQVLKDSSKPLKERFR-ALFTL-KNIGGKTAIQCISEAFADESALLKHE----LAYCLG 63
+ + K+ + R A+ + + + + I E+ ++++ +K E +A L
Sbjct: 103 LLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALT 162
Query: 64 QMKDSDAN--------DILRQVLEDKSQEPMVRHEAAEALGAI----GDKSSISILEK 109
+ + + N L + L + P VR +AEALG + GDK+ +L
Sbjct: 163 RTQPTALNKKLLKLLTTSLVKTLNEPD--PTVRDSSAEALGTLIKLMGDKAVTPLLAD 218
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.19
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 24/50 (48%)
Query: 185 RDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALT--SALE 232
+ + ++++L LY A S PAL + +E
Sbjct: 20 QALKKLQASL----------KLY----A--------DDSAPALAIKATME 47
Score = 31.1 bits (69), Expect = 0.45
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 14/34 (41%)
Query: 100 DKSSISILE---K-YAQD--PVKEVSETCYLALK 127
+K ++ L+ K YA D P LA+K
Sbjct: 18 EKQALKKLQASLKLYADDSAPA--------LAIK 43
Score = 31.1 bits (69), Expect = 0.45
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 14/34 (41%)
Query: 400 DKSSISILE---K-YAQD--PVKEVSETCYLALK 427
+K ++ L+ K YA D P LA+K
Sbjct: 18 EKQALKKLQASLKLYADDSAPA--------LAIK 43
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 32.2 bits (73), Expect = 0.28
Identities = 37/199 (18%), Positives = 61/199 (30%), Gaps = 60/199 (30%)
Query: 220 NPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIAL 279
S + ALT + D +E+VR A L + L + DE VR + +A
Sbjct: 72 RYSPVEALTPLIRDS--DEVVRRAVAYRLPR-------EQLSALMFDEDREVRIT--VA- 119
Query: 280 DMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTA 339
+P E++ Q+ D RA + +
Sbjct: 120 --------------------DRLPLEQLE---QMAADRD----YLVRA-----YVVQRIP 147
Query: 340 IQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIG 399
+ D+ ++ +A L + + L + +D EP VR A L
Sbjct: 148 PGRLFRFMRDEDRQVRKLVAKRLPE-------ESLGLMTQD--PEPEVRRIVASRLRG-- 196
Query: 400 DKSSISILEKYAQDPVKEV 418
L + DP V
Sbjct: 197 -----DDLLELLHDPDWTV 210
Score = 29.8 bits (67), Expect = 1.5
Identities = 33/203 (16%), Positives = 55/203 (27%), Gaps = 66/203 (32%)
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131
+ L ++ D + +VR A L L D +EV RI
Sbjct: 77 EALTPLIRDS--DEVVRRAVAYRLPR-------EQLSALMFDEDREV---------RI-- 116
Query: 132 VTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVE 191
+V PL+ + + + D +R + ++
Sbjct: 117 ---------------TVADRLPLEQL--------EQMAADRDYLVRAYVVQRI------- 146
Query: 192 STLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAI 251
L + R +A L + +L +D VR A L
Sbjct: 147 PPGRLFRFMRDEDRQVRKLVAKRLPE-------ESLGLMTQD--PEPEVRRIVASRLRG- 196
Query: 252 ATPECYDVLRKYLSDEKVVVRQS 274
D L + L D VR +
Sbjct: 197 ------DDLLELLHDPDWTVRLA 213
Score = 28.3 bits (63), Expect = 5.1
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 37 KTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALG 96
+ + DE ++ +A L + + L + +D EP VR A L
Sbjct: 145 RIPPGRLFRFMRDEDRQVRKLVAKRLPE-------ESLGLMTQD--PEPEVRRIVASRLR 195
Query: 97 AIGDKSSISILEKYAQDPVKEV 118
L + DP V
Sbjct: 196 G-------DDLLELLHDPDWTV 210
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 32.8 bits (73), Expect = 0.31
Identities = 48/383 (12%), Positives = 105/383 (27%), Gaps = 49/383 (12%)
Query: 57 ELAYCLGQMKDSDANDILRQVLED-KSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPV 115
++ G + + IL +L S VR ALG + + + +
Sbjct: 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219
Query: 116 KEVSETCYLALKR--IQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLN--EN 171
E+S+ ++ R IQ + ++ + K+ +++
Sbjct: 220 SELSKNDSMSTTRTYIQCI-------------AAISRQAGHRIGEYLEKIIPLVVKFCNV 266
Query: 172 EDLFMRYKAMFKLRDINSV----------ESTLALTEGLSHGSSLYRHEIAFVLGQMQNP 221
+D +R + + L++ + + M
Sbjct: 267 DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 326
Query: 222 SSIPALTSAL----EDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEI 277
+ +D + VR A+ L A+ + + L + V +
Sbjct: 327 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS-----TRHEMLPEFYKTVSPALIS 381
Query: 278 ALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKER-------FRALFT 330
+ ++ +A + P + L ++ PL +AL
Sbjct: 382 RFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK 441
Query: 331 LKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHE 390
QC + +L L + + + L DKS ++ +
Sbjct: 442 QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVL-----VPGIIFSLNDKSSSSNLKID 496
Query: 391 AAEALGAIGDKSSISILEKYAQD 413
A L I S + + Q
Sbjct: 497 ALSCLYVILCNHSPQVFHPHVQA 519
Score = 32.0 bits (71), Expect = 0.52
Identities = 56/414 (13%), Positives = 115/414 (27%), Gaps = 33/414 (7%)
Query: 39 AIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAI 98
AI C+ + + L +L L + N+I R ++ +
Sbjct: 589 AISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKAL--TLIAGSPLKIDLRP 646
Query: 99 GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVS 158
+ IL + + + + AL + + I +D PPL S
Sbjct: 647 VLGEGVPILASFLRKNQRALKLGTLSALDIL--IKNYSDSLTAAMIDAVLDELPPLISES 704
Query: 159 DINKLK------EILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIA 212
D++ + L + I V S L LS ++ +
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 213 FVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVR 272
+ + LT + Q + + ++ +C L + E V
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQ-STALTHKQSYYSI-----AKCVAALTRACPKEGPAVV 818
Query: 273 QSCEIALDMCDYENSVE---LQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALF 329
+ +S+ L + + + L + SS + + A +
Sbjct: 819 GQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASY 878
Query: 330 TLKNIGGKTAIQCISEAF------ADKSALLKHELAYCLGQMKDSDANDILRQVLED--- 380
L +I + + + LL H L + + +
Sbjct: 879 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 938
Query: 381 --KSQEPMVRHEAAEALGAIG---DKSSISILEKYAQDPVKEVSETCYLALKRI 429
+ E R+ AE LG + ++ + L+ Y + A+K
Sbjct: 939 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFT 992
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma
apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A
{Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Length = 1056
Score = 31.5 bits (70), Expect = 0.70
Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 36/278 (12%)
Query: 147 SVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSL 206
+ P + + ++ + ++F + N + + L + L
Sbjct: 244 GIQSAPAASQAASLQNRGGLMYKFPSSAITKMSSLFVTKGKNLESEIHTVLKHLVENNQL 303
Query: 207 YRHE----IAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRK 262
HE L L S Q + R +A+ A+AT E L++
Sbjct: 304 SVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKR 363
Query: 263 YLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLK 322
L+ E++ ++ Q + + E + ++L S +
Sbjct: 364 TLASEQLTSAEA---------------TQIVASTLSNQQATRESLSYARELLNTSFIRNR 408
Query: 323 ERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKS 382
R L + C ++ +D+L Q +
Sbjct: 409 PILRKTAVL--------------GYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAK 453
Query: 383 QEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSE 420
+E +V A +ALG G +SI ++++ K + E
Sbjct: 454 EEEIVL--ALKALGNAGQPNSIKKIQRFLPGQGKSLDE 489
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 30.1 bits (68), Expect = 1.8
Identities = 51/482 (10%), Positives = 128/482 (26%), Gaps = 90/482 (18%)
Query: 16 DSSKPLKERFRALFTLKNI-GGKTAIQCISEAFA---------DESALLKHELAYCLGQM 65
++ ++ TL N+ + + I ++ + L +
Sbjct: 69 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128
Query: 66 KDSDAN-----------DILRQVLEDKSQEPMVRHEAAEALGAI---GDKSSISILEKYA 111
+ +L + L + +S + IL
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALL--NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 112 QDPVKEVSETCYLALKRIQFVTEEDKQKDT----GNIYGSVDPTPPLDDVSDINKLKEIL 167
+ + ++ T E T + P + + + L L
Sbjct: 187 PQAL----------VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236
Query: 168 LNENEDLFMRYKAMFKLRDINSVESTLALTEG--------LSHGSSLYRHEIAFVLGQM- 218
+ ++ + ++ LR+++ + EG L A +L +
Sbjct: 237 TDPSQR--LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294
Query: 219 ----------QNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT-PECYDVLRKYLSDE 267
I AL + E + AL + + + ++ + +
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354
Query: 268 KVVVRQSCEIALDMCDYENSVELQYADT--LCKFKMIPEEKILLIG--------QVLKDS 317
+ + + + + L A + + P L Q+L +
Sbjct: 355 YGL-----PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409
Query: 318 SKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQV 377
+ + R T + ++ I E +L + ++ + + Q+
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQL 468
Query: 378 LEDKSQEPMVRHEAAEALG----------AIGDKSSISILEKYAQDPVKEVSETCYLALK 427
L + ++ AA L AI + + + L + + V+ L
Sbjct: 469 LYSPIEN--IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
Query: 428 RI 429
R+
Sbjct: 527 RM 528
>3dnu_A Protein HIPA; persistence, MDT, multidrug resistance, unknown
function; 1.54A {Escherichia coli} PDB: 3dnt_A 3dnv_A*
3dnw_A* 3hzi_A* 2wiu_A 3fbr_A*
Length = 440
Score = 30.0 bits (67), Expect = 1.8
Identities = 29/148 (19%), Positives = 43/148 (29%), Gaps = 58/148 (39%)
Query: 225 PALTSALEDQTQNEMVRHECAEALGAIATPEC---------------YDVLRKYLSDEKV 269
P T L NE A+ LG + P+ +D R++ ++ V
Sbjct: 190 PNATLDLSQSVDNEYYCLLLAKELG-LNVPDAEIIKAGNVRALAVERFD--RRWNAERTV 246
Query: 270 VVRQSCEIALDMC---------DYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKP 320
++R E DMC YE+ A I L SS+
Sbjct: 247 LLRLPQE---DMCQTFGLPSSVKYESDGGPGIAR---------------IMAFLMGSSEA 288
Query: 321 LKER---FRALFT----------LKNIG 335
LK+R + KN
Sbjct: 289 LKDRYDFMKFQVFQWLIGATQGHAKNFS 316
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 29.6 bits (66), Expect = 2.2
Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 22/136 (16%)
Query: 305 EKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHE----LAY 360
EK + + ++ + + + + L + ++ I E K+ ++ E
Sbjct: 115 EKKPSVIEAIRKALLTICKYYDPLASSGRNE--DMLKDILEHMKHKTPQIRMECTQLFNA 172
Query: 361 CLGQMKDSDAN----------DILRQVLEDKSQEPMVRHEAAEALGAI----GDKSSISI 406
+ + KD + I+ Q++ D P +R E+ + G + +
Sbjct: 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ--PAIRTIGFESFAILIKIFGMNTFVKT 230
Query: 407 LEKYAQDPVKEVSETC 422
LE K++ ET
Sbjct: 231 LEHLDNLKRKKIEETV 246
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 29.4 bits (65), Expect = 2.7
Identities = 53/425 (12%), Positives = 120/425 (28%), Gaps = 84/425 (19%)
Query: 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCL 62
++ + +VL + R A +KN + + +K +
Sbjct: 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKN------------SLTSKDPDIKAQYQQRW 80
Query: 63 GQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS--------ISILEKYAQDP 114
+ + ++ VL+ E A++ + I I L +P
Sbjct: 81 LAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140
Query: 115 VKEVSETCYLALKRIQFVTEEDK----QKDTGNIYGSVDPTPPLDDVSD----------- 159
L+ I ++ ++ Q + I ++ ++ S+
Sbjct: 141 -NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199
Query: 160 --INKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQ 217
+ K E+E F+ + + + +A + L SLY + +G
Sbjct: 200 NSLEFTKANFDKESERHFI-MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP 258
Query: 218 MQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRK--YLSDEKVVVRQSC 275
+I A+ S +++ V + E + E + + S
Sbjct: 259 ALFAITIEAMKSDIDE------VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312
Query: 276 EIALDMC-------------------DYENSVELQYADTLCKFKMIPEEKIL-----LIG 311
A D + + L E+ I+ I
Sbjct: 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIK 372
Query: 312 QVLKDSSKPLKERFRALFTLKNIGG-----------KTAIQCISEAFADKSALLKHELAY 360
+ +K+ + R A+ I A+ + E D S +++ A+
Sbjct: 373 EHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW 430
Query: 361 CLGQM 365
+G++
Sbjct: 431 TVGRI 435
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 29.5 bits (66), Expect = 3.0
Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 75/291 (25%)
Query: 147 SVDPTPPLDDVSD----INKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSH 202
S +P PP+D+V + + E L E+ +++++ + L +I +
Sbjct: 49 SKEPNPPIDEVISTPGVVARFVE-FLKRKENCTLQFESAWVLTNI-------------AS 94
Query: 203 GSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT--PECYDVL 260
G+SL + ++P L ++ E V+ + ALG IA C
Sbjct: 95 GNSLQTRIVI-------QAGAVPIFIELL--SSEFEDVQEQAVWALGNIAGDSTMC---- 141
Query: 261 RKYLSDEKVVVRQSCEIALDMCDYENSVELQ--YADTLCKFKMIPEEKILLIG------- 311
R Y+ D ++ L + +N + + L
Sbjct: 142 RDYVLDCNIL-----PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 312 --QVLKDSSKPLKERFRALFTLKNI--GGKTAIQCISEA---------FADKSALLKHEL 358
+L S + A + L + G IQ + +A +
Sbjct: 197 LSWLLFVSDTDVLAD--ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 254
Query: 359 AYCLGQMKDSDANDILRQVLED-----------KSQEPMVRHEAAEALGAI 398
+G + +DI QV+ + S + ++ EA + I
Sbjct: 255 LRAVGNI--VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 28.7 bits (64), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 149 DP-TPPLDDVSDINKLKEILLNENEDLFMRYK 179
DP P L+D+ D+ K LL + F YK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYK 193
Score = 28.7 bits (64), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 449 DP-TPPLDDVSDINKLKEILLNENEDLFMRYK 479
DP P L+D+ D+ K LL + F YK
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWFRIYK 193
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur
cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta
channel; HET: SAM LYS PLP; 2.10A {Clostridium
subterminale}
Length = 416
Score = 29.1 bits (65), Expect = 4.1
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 11/136 (8%)
Query: 21 LKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELA---YCLGQMKDSDAND-ILRQ 76
++ R + LK T E + +A Y L + +D ND + +Q
Sbjct: 24 VRNRIETVEELKKYIPLTK----EEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQ 79
Query: 77 VLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALK---RIQFVT 133
+ + + + L D + +Y + +++ C + + R +F
Sbjct: 80 AIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAG 139
Query: 134 EEDKQKDTGNIYGSVD 149
+ D I ++D
Sbjct: 140 QSDDSMPMERIDKAID 155
Score = 29.1 bits (65), Expect = 4.1
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 11/136 (8%)
Query: 321 LKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELA---YCLGQMKDSDAND-ILRQ 376
++ R + LK T E + +A Y L + +D ND + +Q
Sbjct: 24 VRNRIETVEELKKYIPLTK----EEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQ 79
Query: 377 VLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALK---RIQFVT 433
+ + + + L D + +Y + +++ C + + R +F
Sbjct: 80 AIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAG 139
Query: 434 EEDKQKDTGNIYGSVD 449
+ D I ++D
Sbjct: 140 QSDDSMPMERIDKAID 155
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 28.7 bits (63), Expect = 5.0
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 240 VRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALD 280
RH A A+ + + D K+ + + D
Sbjct: 190 KRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTD 230
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 28.7 bits (63), Expect = 5.7
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 19/162 (11%)
Query: 254 PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKIL---LI 310
E +L +L ++ VV I ++ A K + +IL LI
Sbjct: 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI 554
Query: 311 GQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDA 370
+LK S P K +I + + D L +L +
Sbjct: 555 ALILKHGSSPEKLAENEFLM-------RSIFRVLQTSEDSIQPLFPQLLAQFIE------ 601
Query: 371 NDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ 412
I+ + ++ S P H E++GAI + + L
Sbjct: 602 --IVTIMAKNPS-NPRFTHYTFESIGAILNYTQRQNLPLLVD 640
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 28.0 bits (63), Expect = 6.1
Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 43/206 (20%)
Query: 224 IPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCD 283
+PAL L + NE + E AL IA+ + + + D + + L +
Sbjct: 56 LPALVQLL--SSPNEQILQEALWALSNIASGG--NEQIQAVIDAGAL---PALVQL-LSS 107
Query: 284 YENSVELQYADTLCKFKMIPEEKILLIG---------QVLKDSSKPLKERFRALFTLKNI 334
+ + L E+I + Q+L ++ + + AL+ L NI
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE--ALWALSNI 165
Query: 335 --GGKTAIQCISEAFA---------DKSALLKHELAYCLGQMKDSDANDILRQVLED--- 380
GG IQ + +A A + + E + L + + + +Q +++
Sbjct: 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI--ASGGNEQKQAVKEAGA 223
Query: 381 --------KSQEPMVRHEAAEALGAI 398
+ ++ EA EAL +
Sbjct: 224 LEKLEQLQSHENEKIQKEAQEALEKL 249
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.4 bits (63), Expect = 6.6
Identities = 47/389 (12%), Positives = 109/389 (28%), Gaps = 87/389 (22%)
Query: 53 LLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSS--------- 103
LL E + + + L K+ ++ E+A AL I +S
Sbjct: 84 LLSREKQPPIDNIIRAGLIPKFVSFL-GKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 142
Query: 104 --ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDIN 161
I P +SE AL I + +D +G++DP +
Sbjct: 143 GAIPAFISLLASPHAHISEQAVWALGNI--AGDGSAFRDLVIKHGAIDP---------LL 191
Query: 162 KLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNP 221
L + + L ++ ++ + +
Sbjct: 192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI------------------ 233
Query: 222 SSIPALTSALEDQTQNEMVRHECAEALGAIA--TPECYDVLRK---------YLSDEKVV 270
+P L L + V + A+ + E +++ K L ++
Sbjct: 234 --LPTLVRLL--HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289
Query: 271 VRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFT 330
+ A+ + K+I + + +L + +++ A +T
Sbjct: 290 IVTPALRAI--------GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK--EATWT 339
Query: 331 LKNI--GGKTAIQCISEA---------FADKSALLKHELAYCLGQMKDSDANDILRQVLE 379
+ NI G + IQ + + + E A+ + + + ++
Sbjct: 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399
Query: 380 D----------KSQEPMVRHEAAEALGAI 398
+++ + +A+ I
Sbjct: 400 CGIIEPLMNLLSAKDTKIIQVILDAISNI 428
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle,
PSI-2, protein structure initiative; HET: MSE; 1.30A
{Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Length = 89
Score = 26.4 bits (58), Expect = 7.5
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDP 114
+L ++ +D + VR A ++ + + + +S+L++ A DP
Sbjct: 15 VMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMANDP 68
Score = 26.4 bits (58), Expect = 7.5
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDP 414
+L ++ +D + VR A ++ + + + +S+L++ A DP
Sbjct: 15 VMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMANDP 68
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 28.0 bits (63), Expect = 7.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 92 AEALGAIGDKSSISILEK-YAQDPVKEVSETCYLALKRIQFVTEEDKQK 139
A A+G G KS LEK Y + ++ T L +K + V + +
Sbjct: 158 ANAIGR-GAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKN 205
Score = 28.0 bits (63), Expect = 7.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 392 AEALGAIGDKSSISILEK-YAQDPVKEVSETCYLALKRIQFVTEEDKQK 439
A A+G G KS LEK Y + ++ T L +K + V + +
Sbjct: 158 ANAIGR-GAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKN 205
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 27.7 bits (62), Expect = 8.2
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 97 AIGDKSS--ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDT 141
IG+ S+ +S+L++ ++ + LA+K + + K
Sbjct: 163 CIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAE 209
Score = 27.7 bits (62), Expect = 8.2
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 397 AIGDKSS--ISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDT 441
IG+ S+ +S+L++ ++ + LA+K + + K
Sbjct: 163 CIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAE 209
>2qzg_A Conserved uncharacterized archaeal protein; unknown function
protein, structu genomics, PSI-2, protein structure
initiative; 2.09A {Methanococcus maripaludis S2} SCOP:
a.29.14.1
Length = 94
Score = 26.4 bits (58), Expect = 8.2
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDP 114
+ +L +++ED + +R A A A+ ++ ++I L+ ++DP
Sbjct: 19 ISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDP 72
Score = 26.4 bits (58), Expect = 8.2
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIGDK---------SSISILEKYAQDP 414
+ +L +++ED + +R A A A+ ++ ++I L+ ++DP
Sbjct: 19 ISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDP 72
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism,
hydrolase; HET: MSE; 2.00A {Coxiella burnetii}
Length = 178
Score = 27.3 bits (61), Expect = 10.0
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 149 DPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 181
+ + + + +LL+ F RYK +
Sbjct: 114 KACRAYEAIQSLKDISSLLLDAISHFFERYKDL 146
Score = 27.3 bits (61), Expect = 10.0
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 449 DPTPPLDDVSDINKLKEILLNENEDLFMRYKAM 481
+ + + + +LL+ F RYK +
Sbjct: 114 KACRAYEAIQSLKDISSLLLDAISHFFERYKDL 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,295,078
Number of extensions: 448671
Number of successful extensions: 1200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 123
Length of query: 500
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 402
Effective length of database: 3,965,535
Effective search space: 1594145070
Effective search space used: 1594145070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.1 bits)