RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10052
(500 letters)
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 69.1 bits (167), Expect = 1e-13
Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 26/268 (9%)
Query: 29 FTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVR 88
+ L N K + D ++L + A L DA + + DK+ + R
Sbjct: 10 YGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKN--YIRR 67
Query: 89 HEAAEALG------AIGDKSSISILEKYAQDPVKEVSETCYLALKRI------------Q 130
A LG D + D V T + + +
Sbjct: 68 DIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVE 127
Query: 131 FVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV 190
K T + ++D + I L +L + N D+ + ++
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187
Query: 191 ESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGA 250
+ E L + R E L ++ + L L+ V + EA G
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NTVYDDIIEAAGE 243
Query: 251 IATPECYDVLRKYLSDE--KVVVRQSCE 276
+ VL L ++ + +
Sbjct: 244 LGDKTLLPVLDTMLYKFDDNEIITSAID 271
Score = 66.0 bits (159), Expect = 1e-12
Identities = 51/281 (18%), Positives = 94/281 (33%), Gaps = 33/281 (11%)
Query: 175 FMRYKAMFKLRDINSVE--STLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALE 232
+ + KA + N + + L L +SL R A VL ++
Sbjct: 1 YQKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS 60
Query: 233 DQTQNEMVRHECAEALGAIATPECYD------VLRKYLSDEKVVVRQSCEIA-------- 278
D+ N + R A LG I + + + L+D+ VR + +
Sbjct: 61 DK--NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN 118
Query: 279 ----------LDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRAL 328
+ ++ S ++ A + + I L+ +LKD + ++
Sbjct: 119 PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFA 178
Query: 329 FTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVR 388
+ C E DK+ ++ E L KD +L L+ V
Sbjct: 179 ININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NTVY 234
Query: 389 HEAAEALGAIGDKSSISILEKYAQ-DPVKEVSETCYLALKR 428
+ EA G +GDK+ + +L+ E+ + LKR
Sbjct: 235 DDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 275
Score = 39.1 bits (89), Expect = 7e-04
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 76 QVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ-DPVKEVSETCYLALKR 128
VL D+ ++ V + EA G +GDK+ + +L+ E+ + LKR
Sbjct: 222 SVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 275
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 54.9 bits (131), Expect = 5e-10
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 170 ENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTS 229
+E+ ++R L + E+ L E LS+ R A+++G Q+ ++ L
Sbjct: 2 ADENKWVRRDVSTALSRMGD-EAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIK 60
Query: 230 ALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDM 281
LED + A +L I + K R+ L+
Sbjct: 61 LLEDDSGFVR--SGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLET 110
Score = 50.3 bits (119), Expect = 2e-08
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 14 LKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDI 73
+ D +K + R L +G + A + + E+ ++E ++ A+ +G +D A +
Sbjct: 1 MADENKWV--RRDVSTALSRMGDE-AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEP 57
Query: 74 LRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALK 127
L ++LED S AA +L IG + + +EK A+ + L+
Sbjct: 58 LIKLLEDDSGFVR--SGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLE 109
Score = 49.5 bits (117), Expect = 4e-08
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 314 LKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDI 373
+ D +K + R L +G + A + + E+ +++ ++ A+ +G +D A +
Sbjct: 1 MADENKWV--RRDVSTALSRMGDE-AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEP 57
Query: 374 LRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALK 427
L ++LED S AA +L IG + + +EK A+ + L+
Sbjct: 58 LIKLLEDDSGFVR--SGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLE 109
Score = 32.6 bits (73), Expect = 0.024
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 231 LEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL 290
+ D+ N+ VR + + AL + E ++ L + LS+E +R + + E +VE
Sbjct: 1 MADE--NKWVRRDVSTALSRMG-DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEP 57
Query: 291 QYADTLCKFKMIPEEKILLIGQV 313
+ + Q+
Sbjct: 58 LIKLLEDDSGFVRSGAARSLEQI 80
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 46.3 bits (108), Expect = 5e-06
Identities = 50/435 (11%), Positives = 105/435 (24%), Gaps = 67/435 (15%)
Query: 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCL 62
++ + +VL + R A +KN + + +K +
Sbjct: 32 LPTFLVELSRVLANPGNSQVARVAAGLQIKN------------SLTSKDPDIKAQYQQRW 79
Query: 63 GQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETC 122
+ + ++ VL+ E A++ + I Q P
Sbjct: 80 LAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI-----ACAEIPVNQWPELIPQLVA 134
Query: 123 YLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLK-EILLNENEDLFMRYKAM 181
+ +E + G I +DP D ++I + + E ++ A
Sbjct: 135 NVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAAT 194
Query: 182 FKLRDINSVESTLALTEGLSHGSSLYRHEIA-----------------------FVLGQM 218
L + E H E +
Sbjct: 195 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY 254
Query: 219 QNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIA 278
P+ A++ + V + E + E + + E+ +
Sbjct: 255 MGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 279 LDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGK- 337
+ V ++ + D P K L L
Sbjct: 313 YAKGALQYLVP-----------ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD 361
Query: 338 ---TAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLED---------KSQEP 385
+ I E + + G + + L+ ++ K
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 386 MVRHEAAEALGAIGD 400
+VR AA +G I +
Sbjct: 422 VVRDTAAWTVGRICE 436
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 38.2 bits (87), Expect = 0.002
Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 19/190 (10%)
Query: 254 PECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQV 313
+ + D K VR + + + + VE + + I +
Sbjct: 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 460
Query: 314 LKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDI 373
+ K L E+F + I I + D + L + +C+ + + DI
Sbjct: 461 ATSNLKKLVEKFGKEWAHATI-----IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI 515
Query: 374 LRQVLED------KSQEPMVRHEAAEALGAIGDKSS--------ISILEKYAQDPVKEVS 419
+ + VR A++L IG ILEK QD +V
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Query: 420 ETCYLALKRI 429
AL +
Sbjct: 576 YFAQEALTVL 585
Score = 37.5 bits (85), Expect = 0.004
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 14/107 (13%)
Query: 37 KTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLED------KSQEPMVRHE 90
T I + D + L + +C+ + + DI + + VR
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 91 AAEALGAIGDKSS--------ISILEKYAQDPVKEVSETCYLALKRI 129
A++L IG ILEK QD +V AL +
Sbjct: 539 VAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
Score = 32.5 bits (72), Expect = 0.14
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 22/168 (13%)
Query: 252 ATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF--KMIPEEKILL 309
A E +L L E + + + D+ ++ L K K E
Sbjct: 421 AIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT 480
Query: 310 IGQVLKD--SSKPLKERFRALFTLKNIGG--------KTAIQCISEAFADKSALLKHELA 359
I + R LF + + K + + D A ++ +A
Sbjct: 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA 540
Query: 360 YCLGQMK--------DSDANDILRQVLEDKSQEPMVRHEAAEALGAIG 399
L ++ S+ IL ++ +D+ + V++ A EAL +
Sbjct: 541 KSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD--VKYFAQEALTVLS 586
Score = 32.1 bits (71), Expect = 0.20
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 40 IQCISEAFADES---ALLKHELAYCLGQMKDSDANDILRQVLED--KSQEPMVRHEAAEA 94
+ +++ DE L +L + + L LE +E +VR +A E+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVES 110
Query: 95 LGAIGDKSSISILEKYAQDPVKEVSE 120
L AI + S S LE + VK ++
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAG 136
Score = 30.9 bits (68), Expect = 0.36
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 340 IQCISEAFADKS---ALLKHELAYCLGQMKDSDANDILRQVLED--KSQEPMVRHEAAEA 394
+ +++ D+ L +L + + L LE +E +VR +A E+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVES 110
Query: 395 LGAIGDKSSISILEKYAQDPVKEVSE 420
L AI + S S LE + VK ++
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAG 136
Score = 29.0 bits (63), Expect = 1.4
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 37 KTAIQCISEAFADESALLKHELAYCLGQMK--------DSDANDILRQVLEDKSQEPMVR 88
K + + D A ++ +A L ++ S+ IL ++ +D+ + V+
Sbjct: 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD--VK 575
Query: 89 HEAAEALGAIG 99
+ A EAL +
Sbjct: 576 YFAQEALTVLS 586
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 33.9 bits (77), Expect = 0.030
Identities = 35/208 (16%), Positives = 52/208 (25%), Gaps = 43/208 (20%)
Query: 72 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQF 131
+ L ++ D + +VR A L L D +EV R+
Sbjct: 69 EALTPLIRDS--DEVVRRAVAYRLPR-------EQLSALMFDEDREV---RITVADRLPL 116
Query: 132 VTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVE 191
E D D V I + +ED +R
Sbjct: 117 EQLEQMAADR-------DYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVA-------KRL 162
Query: 192 STLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAI 251
+L R +A L L L D + VR E
Sbjct: 163 PEESLGLMTQDPEPEVRRIVASRLR-------GDDLLELLHD--PDWTVRLAAVEHASL- 212
Query: 252 ATPECYDVLRKYLSDEKVVVRQSCEIAL 279
+ LR+ L + VR + L
Sbjct: 213 ------EALRE-LDEPDPEVRLAIAGRL 233
Score = 32.0 bits (72), Expect = 0.11
Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 29/175 (16%)
Query: 223 SIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMC 282
+ ALT + D +E+VR A L + L + DE VR + L +
Sbjct: 67 PVEALTPLIRDS--DEVVRRAVAYRLPR-------EQLSALMFDEDREVRITVADRLPLE 117
Query: 283 DYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQC 342
E + + + + ++D + ++ K + + +
Sbjct: 118 QLEQMAADRDYLVRAYV--VQRIPPGRLFRFMRDEDRQVR---------KLVAKRLPEES 166
Query: 343 ISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGA 397
+ D ++ +A L D L ++L D VR A E
Sbjct: 167 LGLMTQDPEPEVRRIVASRLR-------GDDLLELLHDPD--WTVRLAAVEHASL 212
Score = 28.2 bits (62), Expect = 2.1
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 372 DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETC 422
+ L ++ D + +VR A L L D +EV T
Sbjct: 69 EALTPLIRDS--DEVVRRAVAYRLPR-------EQLSALMFDEDREVRITV 110
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 34.3 bits (77), Expect = 0.039
Identities = 54/431 (12%), Positives = 119/431 (27%), Gaps = 34/431 (7%)
Query: 57 ELAYCLGQMKDSDANDILRQVLED-KSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPV 115
++ G + + IL +L S VR ALG + + + +
Sbjct: 157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 216
Query: 116 KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLF 175
E+S+ ++ R + G+ G V N + L F
Sbjct: 217 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 276
Query: 176 MRYKAMFKLRDINSVESTL-ALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALE-- 232
+ V + + + L++ + + M + +
Sbjct: 277 ESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEY 336
Query: 233 --DQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL 290
D + VR A+ L A+ + + Y + ++ + + E +V+
Sbjct: 337 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR-------FKEREENVKA 389
Query: 291 QYADTLCKF--KMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFA 348
+ P + L ++ PL + + ++ + +
Sbjct: 390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI--------VKALHKQMK 441
Query: 349 DKSALLKHELAYCLGQMKDSDANDI----------LRQVLEDKSQEPMVRHEAAEALGAI 398
+KS + L ++ + + + L DKS ++ +A L I
Sbjct: 442 EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI 501
Query: 399 GDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVS 458
S + + Q V V +I + + +D D
Sbjct: 502 LCNHSPQVFHPHVQALVPPVVACVGDPFYKIT-SEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 459 DINKLKEILLN 469
I L +
Sbjct: 561 YIKDLFTCTIK 571
Score = 30.5 bits (67), Expect = 0.60
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 27/208 (12%)
Query: 56 HELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPV 115
E+ + + + ++ + S+E V+ A+ ALG+I + L Q+
Sbjct: 840 GEVGHHIDLSGQLELKSVILEAFSSPSEE--VKSAASYALGSISVGNLPEYLPFVLQEIT 897
Query: 116 KEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDL- 174
+ YL L ++ + ++ L + E
Sbjct: 898 SQPKRQ-YLLLHSLKEIISSASVVGLKPYVENI-----------WALLLKHCECAEEGTR 945
Query: 175 FMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQM----------QNPSSI 224
+ + + KL I+ L L GSS R + + + I
Sbjct: 946 NVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCI 1005
Query: 225 PALTSALEDQTQNEMVRHECAEALGAIA 252
LED + VR + A
Sbjct: 1006 GDFLKTLED--PDLNVRRVALVTFNSAA 1031
Score = 28.2 bits (61), Expect = 2.8
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 9/117 (7%)
Query: 1 MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAI--------QCISEAFADESA 52
E + + Q + K +L + + + + +
Sbjct: 883 GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE 942
Query: 53 LLKHELAYCLGQMKDSDANDILRQVLE-DKSQEPMVRHEAAEALGAIGDKSSISILE 108
++ +A CLG++ D +L ++ S R A+ I
Sbjct: 943 GTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDP 999
Score = 28.2 bits (61), Expect = 2.9
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 16/117 (13%)
Query: 221 PSSIPALTSALEDQTQNEMVRHECAEALGAIAT---PECYDVLRKYLSDEKVVVRQSCEI 277
+ L E E R+ AE LG + L+ YL R S
Sbjct: 927 ENIWALLLKHCECA--EEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVT 984
Query: 278 ALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNI 334
A+ +D + + I + L+D + R AL T +
Sbjct: 985 AVKFT---------ISDHPQPIDPLLKNCIGDFLKTLEDPDLNV--RRVALVTFNSA 1030
Score = 27.0 bits (58), Expect = 7.2
Identities = 46/451 (10%), Positives = 125/451 (27%), Gaps = 48/451 (10%)
Query: 21 LKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLED 80
+ E + L + + ++ I + D++ +++ CLG + + +++
Sbjct: 28 MTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDT 87
Query: 81 -----KSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEE 135
S + +R ++ L + + + V + I +
Sbjct: 88 LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDV 145
Query: 136 DKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLN--ENEDLFMRYKAMFKLRDINSVEST 193
Q + +I + V+ + LL + L +R + + L +
Sbjct: 146 SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 205
Query: 194 LA--------LTEGLSHGSSLYRHEIAFVLGQM----------QNPSSIPALTSALEDQT 235
+ L+E + S + + IP +
Sbjct: 206 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV-- 263
Query: 236 QNEMVRHECAEALGAIAT----------PECYDVLRKYLSDEKVVVRQSCEIALDMCDYE 285
++ +R C +A + ++ KYL+ + + + D +
Sbjct: 264 DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 323
Query: 286 NSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISE 345
+ +V + ++K L + KT +
Sbjct: 324 GGDDDDQGSDDEYSDDDDMSW-----KVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALIS 378
Query: 346 AFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSIS 405
F ++ +K ++ + + + M + E + + +
Sbjct: 379 RFKEREENVKADVFHAYLSLLKQTRPV----QSWLCDPDAMEQGETPLTMLQSQVPNIVK 434
Query: 406 ILEKYAQDPVKEVSETCYLALKRIQFVTEED 436
L K ++ + + C+ L + V
Sbjct: 435 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGA 465
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 33.6 bits (76), Expect = 0.055
Identities = 47/395 (11%), Positives = 109/395 (27%), Gaps = 82/395 (20%)
Query: 81 KSQEPMVRHEAAEALGAIGDKSSISILE----KYAQDPVKEVSETCYLALKRIQFVTEED 136
+ P++R A +G I L K +D V +T + + ++ + +
Sbjct: 93 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM 152
Query: 137 KQ--------------KDTGNIYGSV---------DPTPPLDDVSDINKLKEILLNENED 173
+ + + +V P L D++ N K +
Sbjct: 153 VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT 212
Query: 174 LFMRYKAMFKLRDINSVESTLA------LTEGLSHGSSLYRHEIAFVLGQMQNPSSIPAL 227
+ + + L + N + A +T LSH +S VL + +
Sbjct: 213 EWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 272
Query: 228 TSA----------LEDQTQNEMVRHECAEALGAIAT------PECYDVLRKYLSDEKVVV 271
+ + V++ + I + V +D V
Sbjct: 273 YYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVK 332
Query: 272 RQSCEIALDMCDYENSVELQYADTLCKF-----KMIPEEKILLIGQVLKDSSKPLKERFR 326
+ +I + + N ++ L ++ + + IG+ + +
Sbjct: 333 LEKLDIMIRLASQANIAQV--LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVS 390
Query: 327 ALFTLKNIGGKTAIQCISEAFAD-----------------------KSALLKHELAYCLG 363
L L +Q D + + + +G
Sbjct: 391 TLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVG 450
Query: 364 QMKD--SDANDILRQVLED-KSQEPMVRHEAAEAL 395
+ + +A+++L LE + V+ A+
Sbjct: 451 EYAERIDNADELLESFLEGFHDESTQVQLTLLTAI 485
>d1ncqc_ b.121.4.1 (C:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 236
Score = 32.1 bits (73), Expect = 0.11
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 130 QFVTEEDKQKDTGNIYGSVDPTPPLD---DVSDINKLKEILLNENEDLFMRYKAMFKLRD 186
QF+T +D+Q + + +PTP + V ++ ++ ++ D + M
Sbjct: 12 QFLTTDDRQSP--SALPNYEPTPRIHIPGKVHNLLEIIQV------DTLI---PMNNTHT 60
Query: 187 INSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNP 221
+ V S L ++ + G +
Sbjct: 61 KDEVNSYLIPLNANRQNEQVFGTNLFIGDGVFKTT 95
Score = 30.1 bits (68), Expect = 0.49
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 430 QFVTEEDKQKDTGNIYGSVDPTPP 453
QF+T +D+Q + + +PTP
Sbjct: 12 QFLTTDDRQSP--SALPNYEPTPR 33
>d1pvc3_ b.121.4.1 (3:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 235
Score = 30.2 bits (68), Expect = 0.41
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 130 QFVTEEDKQKDTGNIYGSVDPTPPLD 155
Q++T ++ Q D TPP+D
Sbjct: 12 QYLTSDNHQSP--CAIPEFDVTPPID 35
Score = 30.2 bits (68), Expect = 0.41
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 430 QFVTEEDKQKDTGNIYGSVDPTPPLD 455
Q++T ++ Q D TPP+D
Sbjct: 12 QYLTSDNHQSP--CAIPEFDVTPPID 35
>d1bev3_ b.121.4.1 (3:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 242
Score = 29.8 bits (67), Expect = 0.70
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 130 QFVTEEDKQKDTGNIYGSVDPTPP 153
QF+T ++ I PTP
Sbjct: 12 QFMTTDEDCSP--CILPDFQPTPE 33
Score = 29.8 bits (67), Expect = 0.70
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 430 QFVTEEDKQKDTGNIYGSVDPTPP 453
QF+T ++ I PTP
Sbjct: 12 QFMTTDEDCSP--CILPDFQPTPE 33
>d1d4m3_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 238
Score = 29.0 bits (65), Expect = 1.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 130 QFVTEEDKQKDTGNIYGSVDPTPPLD 155
QF+T +D Q D TP ++
Sbjct: 12 QFLTSDDFQSP--CALPQFDVTPSMN 35
Score = 29.0 bits (65), Expect = 1.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 430 QFVTEEDKQKDTGNIYGSVDPTPPLD 455
QF+T +D Q D TP ++
Sbjct: 12 QFLTSDDFQSP--CALPQFDVTPSMN 35
>d2auaa1 d.166.1.6 (A:2-195) Hypothetical protein BC2332 {Bacillus
cereus [TaxId: 1396]}
Length = 194
Score = 28.3 bits (63), Expect = 1.5
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 2 IPEEKILLIGQVL---KDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHEL 58
I K + IGQ++ K+ L F N G+ IQ ++ + ++ + +E
Sbjct: 10 IVTRKKMHIGQMIPFNKNQHNTLYHFFFE-REQLNANGEDGIQILNNHYKNDELHINNEN 68
Query: 59 AYCLGQMKDSDANDILRQVLEDKSQEPMVRHE 90
A + D ++E MVR +
Sbjct: 69 AKVVISYMDQTIRAARETIVE------MVRLQ 94
Score = 27.5 bits (61), Expect = 3.2
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 302 IPEEKILLIGQVL---KDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHEL 358
I K + IGQ++ K+ L F N G+ IQ ++ + + + +E
Sbjct: 10 IVTRKKMHIGQMIPFNKNQHNTLYHFFFE-REQLNANGEDGIQILNNHYKNDELHINNEN 68
Query: 359 AYCLGQMKDSDANDILRQVLEDKSQEPMVRHE 390
A + D ++E MVR +
Sbjct: 69 AKVVISYMDQTIRAARETIVE------MVRLQ 94
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 231
Score = 28.3 bits (63), Expect = 1.7
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 15/93 (16%)
Query: 130 QFVTEEDKQKDTGNIYGSVDPTPP---------LDDVSDINKLKEILLNENEDLFMRYKA 180
+ + T IYG P +++ I +
Sbjct: 13 TWYSTLPDS--TVPIYGKTPVAPANYMVGEYKDFLEIAQIPTFIGNKVPNAVPYIEASNT 70
Query: 181 MFKLRDINSVESTLALTEG----LSHGSSLYRH 209
K + + + TL+ + L+ S +
Sbjct: 71 AVKTQPLAVYQVTLSCSCLANTFLAALSRNFAQ 103
Score = 27.9 bits (62), Expect = 2.5
Identities = 5/24 (20%), Positives = 7/24 (29%), Gaps = 2/24 (8%)
Query: 430 QFVTEEDKQKDTGNIYGSVDPTPP 453
+ + T IYG P
Sbjct: 13 TWYSTLPDS--TVPIYGKTPVAPA 34
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 28.3 bits (62), Expect = 1.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 70 ANDILRQVLEDKSQEPMVRHEAAEALGAIG 99
N +R LE+ + A+ GA+G
Sbjct: 219 QNYGVRGALEEGLGVEIKTSPLAQYNGALG 248
Score = 28.3 bits (62), Expect = 1.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 370 ANDILRQVLEDKSQEPMVRHEAAEALGAIG 399
N +R LE+ + A+ GA+G
Sbjct: 219 QNYGVRGALEEGLGVEIKTSPLAQYNGALG 248
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 28.0 bits (62), Expect = 2.2
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 114 PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED 173
V L + T+E + + D + D+N L E+L +
Sbjct: 83 SVTRCRPVGVLKM------TDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAH 136
Query: 174 LFMRYKA 180
F YK
Sbjct: 137 FFEHYKD 143
Score = 28.0 bits (62), Expect = 2.2
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 414 PVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENED 473
V L + T+E + + D + D+N L E+L +
Sbjct: 83 SVTRCRPVGVLKM------TDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAH 136
Query: 474 LFMRYKA 480
F YK
Sbjct: 137 FFEHYKD 143
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 27.2 bits (60), Expect = 5.6
Identities = 36/264 (13%), Positives = 83/264 (31%), Gaps = 48/264 (18%)
Query: 222 SSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVV---------- 271
L S Q + R +A+ A+AT E L++ L+ E++
Sbjct: 55 VDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVAST 114
Query: 272 -------RQSCEIALDMCDYENSVELQYADTLCKF-------------KMIPEEKILLIG 311
R+S A ++ + P+E + +
Sbjct: 115 LSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLH 174
Query: 312 QVLK--DSSKPLKERFRALFTLKNIGGKTA-------IQCISEAFADKSALLKHELAYCL 362
+L +E AL L N G + + ++ + S ++ E L
Sbjct: 175 DLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMAL 234
Query: 363 GQMKDSDAN---DILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ----DPV 415
+ D +I+ + + + + +R + K S++++ A +P
Sbjct: 235 RNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVF--FESKPSVALVSMVAVRLRREPN 292
Query: 416 KEVSETCYLALKRIQFVTEEDKQK 439
+V+ Y ++ + + + +
Sbjct: 293 LQVASFVYSQMRSLSRSSNPEFRD 316
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 27.0 bits (58), Expect = 7.2
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 3 PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCL 62
++ + +VL + R A +KN + + +K +
Sbjct: 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKN------------SLTSKDPDIKAQYQQRW 80
Query: 63 GQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAI 98
+ + ++ VL E A++ + I
Sbjct: 81 LAIDANARREVKNYVLHTLGTETYRPSSASQCVAGI 116
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 26.7 bits (58), Expect = 8.3
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 101 KSSISILEKYAQDPVKEVS-ETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSD 159
+ + + +KEV+ E C L I+ ++ + V + S
Sbjct: 30 AQTKQVYDTVGTIALKEVTYENCLQVLADIE--VTYIVERTMLDFPQHVSSDREVRAAS- 86
Query: 160 INKLKEIL------LNENEDLFMRYKAMFKLRDINS 189
+ + L ++ ED+F R + + D+
Sbjct: 87 -TEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEK 121
Score = 26.7 bits (58), Expect = 8.3
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 401 KSSISILEKYAQDPVKEVS-ETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSD 459
+ + + +KEV+ E C L I+ ++ + V + S
Sbjct: 30 AQTKQVYDTVGTIALKEVTYENCLQVLADIE--VTYIVERTMLDFPQHVSSDREVRAAS- 86
Query: 460 INKLKEIL------LNENEDLFMRYKAMFKLRDINS 489
+ + L ++ ED+F R + + D+
Sbjct: 87 -TEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEK 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,729,443
Number of extensions: 82381
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 72
Length of query: 500
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,185,626
Effective search space: 487292286
Effective search space used: 487292286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)