BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10054
(910 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1
Length = 791
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 316/616 (51%), Positives = 388/616 (62%), Gaps = 105/616 (17%)
Query: 13 DETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYH 72
D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL+P DPYH
Sbjct: 32 DPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYH 91
Query: 73 AYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQV---TTEQPFVPKDPPKEFE 129
AYY+H+V + +EGK +E A K + Q QQ+L ++V ++ VPK+PP EFE
Sbjct: 92 AYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPKEPPPEFE 151
Query: 130 FIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKL 189
FIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSLF YFTKL
Sbjct: 152 FIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKL 211
Query: 190 LEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAY 249
+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE EK+RVAY
Sbjct: 212 VEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAY 271
Query: 250 AQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDN-GEEDLEEDEEMEEE 308
AQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER + GE + E E +E
Sbjct: 272 AQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDE 331
Query: 309 YGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNE 368
Q + E+ Q+ D + DM EG SD+E
Sbjct: 332 EDQEKAEETPSQLDQDTQV-------------------------QDMDEG------SDDE 360
Query: 369 NEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPP 428
EE +K + + ++D P K +P PP
Sbjct: 361 -EEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDP-------KASKPLPPA---------- 402
Query: 429 LPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPG 488
PAPD+ +V EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG
Sbjct: 403 --PAPDEYLVSPITG---EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPG 457
Query: 489 QAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRT 548
IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K
Sbjct: 458 LDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQK---------------------- 493
Query: 549 DIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVK 608
++K TWDGH+ S+ +AA+ANITL++QI IHK K
Sbjct: 494 ----------------------PEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAK 531
Query: 609 GLLP-DEEKEKIGPKR 623
GL+P D+ KEKIGP +
Sbjct: 532 GLVPEDDTKEKIGPSK 547
Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 118/182 (64%), Gaps = 26/182 (14%)
Query: 644 GNFPPPTTPDEVGARVLMQERMDN-GEEDLEEDEEMEEEYGQRRPE------DDDMQI-D 695
GNFPPPTTP+E+GAR+L+QER + GE + E E +E Q + E D D Q+ D
Sbjct: 293 GNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDQEKAEETPSQLDQDTQVQD 352
Query: 696 MEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQ 755
M+E S EEE + + P + PPPLPP PD+V+V+K YDPK
Sbjct: 353 MDEGSDDEEEGQKV-----------------PPPPETPMPPPLPPTPDQVIVRKDYDPKA 395
Query: 756 ARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVY 815
++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VY
Sbjct: 396 SKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVY 454
Query: 816 AP 817
AP
Sbjct: 455 AP 456
>sp|A2VDN6|SF3A1_BOVIN Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1
Length = 793
Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 311/615 (50%), Positives = 386/615 (62%), Gaps = 101/615 (16%)
Query: 13 DETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYH 72
D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL+P DPYH
Sbjct: 32 DSTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYH 91
Query: 73 AYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQV---TTEQPFVPKDPPKEFE 129
AYY+H+V + +EGK +E A K + Q QQ+L ++V ++ VPK+PP EFE
Sbjct: 92 AYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQASQQQLPQKVQAQVIQETIVPKEPPPEFE 151
Query: 130 FIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKL 189
FIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSLF YFTKL
Sbjct: 152 FIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKL 211
Query: 190 LEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAY 249
+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE EK+RVAY
Sbjct: 212 VEQYTKILIPPKGLFTKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAY 271
Query: 250 AQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEY 309
AQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER E++
Sbjct: 272 AQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERY--------------EKF 317
Query: 310 GQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNEN 369
G+ + E + + A ++ ++ DM EG SD+E
Sbjct: 318 GESE--------EVEMEVESDEEDEKQEKAEEPPSQLDQDTQVQDMDEG------SDDE- 362
Query: 370 EEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPL 429
EE +K + + ++D P K +P PP P
Sbjct: 363 EEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDP-------KASKPLPPAP---------- 405
Query: 430 PPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQ 489
APD+ +V EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG
Sbjct: 406 --APDEYLVSPITG---EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGL 460
Query: 490 AIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTD 549
IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K
Sbjct: 461 DIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQK----------------------- 495
Query: 550 IFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKG 609
++K TWDGH+ S+ +AA+ANITL++QI IHK KG
Sbjct: 496 ---------------------PEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKG 534
Query: 610 LLP-DEEKEKIGPKR 623
L+P D+ KEKIGP +
Sbjct: 535 LVPEDDTKEKIGPSK 549
Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 28/184 (15%)
Query: 644 GNFPPPTTPDEVGARVLMQERMDN-------GEEDLEEDEEMEEEYGQRRPE--DDDMQI 694
GNFPPPTTP+E+GAR+L+QER + E ++E+ ++E + P D D Q+
Sbjct: 293 GNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDEKQEKAEEPPSQLDQDTQV 352
Query: 695 -DMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDP 753
DM+E S EEE + + P + PPPLPP PD+V+V+K YDP
Sbjct: 353 QDMDEGSDDEEEGQKV-----------------PPPPETPMPPPLPPTPDQVIVRKDYDP 395
Query: 754 KQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQET 813
K ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + +
Sbjct: 396 KASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDE 454
Query: 814 VYAP 817
VYAP
Sbjct: 455 VYAP 458
>sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1
Length = 793
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 310/615 (50%), Positives = 385/615 (62%), Gaps = 101/615 (16%)
Query: 13 DETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYH 72
D S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL+P DPYH
Sbjct: 32 DSAPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYH 91
Query: 73 AYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQV---TTEQPFVPKDPPKEFE 129
AYY+H+V + +EGK +E A K + Q QQ+L ++V ++ VPK+PP EFE
Sbjct: 92 AYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFE 151
Query: 130 FIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKL 189
FIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSLF YFTKL
Sbjct: 152 FIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKL 211
Query: 190 LEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAY 249
+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE EK+RVAY
Sbjct: 212 VEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAY 271
Query: 250 AQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEY 309
AQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER E++
Sbjct: 272 AQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERY--------------EKF 317
Query: 310 GQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNEN 369
G+ + E + + A ++ ++ DM EG SD+E
Sbjct: 318 GESE--------EVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEG------SDDE- 362
Query: 370 EEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPL 429
EE +K + + ++D P K +P PP P
Sbjct: 363 EEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDP-------KASKPLPPAP---------- 405
Query: 430 PPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQ 489
APD+ +V EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG
Sbjct: 406 --APDEYLVSPITG---EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGL 460
Query: 490 AIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTD 549
IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K
Sbjct: 461 DIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQK----------------------- 495
Query: 550 IFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKG 609
++K TWDGH+ S+ +AA+ANITL++QI IHK KG
Sbjct: 496 ---------------------PEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKG 534
Query: 610 LLP-DEEKEKIGPKR 623
L+P D+ KEKIGP +
Sbjct: 535 LVPEDDTKEKIGPSK 549
Score = 122 bits (307), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 28/184 (15%)
Query: 644 GNFPPPTTPDEVGARVLMQERMDN-------GEEDLEEDEEMEEEYGQRRPE--DDDMQI 694
GNFPPPTTP+E+GAR+L+QER + E ++E+ ++E + P D D Q+
Sbjct: 293 GNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQV 352
Query: 695 -DMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDP 753
DM+E S EEE + + P + PPPLPP PD+V+V+K YDP
Sbjct: 353 QDMDEGSDDEEEGQKV-----------------PPPPETPMPPPLPPTPDQVIVRKDYDP 395
Query: 754 KQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQET 813
K ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + +
Sbjct: 396 KASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDE 454
Query: 814 VYAP 817
VYAP
Sbjct: 455 VYAP 458
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
Q G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 758 QYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
>sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana
GN=At1g14650 PE=1 SV=2
Length = 785
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 173/290 (59%), Gaps = 16/290 (5%)
Query: 9 PPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPG 68
PP T ++ +GII+PPP++R IV+KTA FV++NG EFE RI + N KFNFL
Sbjct: 48 PPAAVATHTR-TIGIIHPPPDIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSS 106
Query: 69 DPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQ------------QKQQELLKQVTTE 116
DPYHA+YQH++ + R A TT Q Q +L Q
Sbjct: 107 DPYHAFYQHKLTEYRAQNKDGAQGTDDSDGTTDPQLDTGAADESEAGDTQPDLQAQFRI- 165
Query: 117 QPFVPKDPPKEFEF-IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDF 175
P P + P+ ++ + P I+ +LDI+KLTAQFVARNG+ FLT L +E N QF F
Sbjct: 166 -PSKPLEAPEPEKYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLSNRENNNPQFHF 224
Query: 176 LRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQR 235
++P HS+F +FT L++ Y+++L+PPKD+ +L+ ++ + +L+ +R ++ R QE Q+
Sbjct: 225 MKPTHSMFTFFTSLVDAYSEVLMPPKDLKEKLRKSAADLTTVLERCLHRLEWDRSQEQQK 284
Query: 236 KQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGAR 285
K+EE E +RV A IDWHDFVVVE++D+ E PPP T DEV R
Sbjct: 285 KKEEDEKELERVQMAMIDWHDFVVVESIDFADEEDEELPPPMTLDEVIRR 334
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 768 EFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETV 814
+ +ISPITGE IP +++ EHMRI L+DP++ EQ+D+ + KI + T+
Sbjct: 410 KVVISPITGELIPINEMSEHMRISLIDPKFKEQKDR-MFAKIRETTL 455
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K++ + G F KD+ SLA+YN+ G + L L+ERGGRK+
Sbjct: 747 QKLSGKAG-FLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785
>sp|O13900|SA114_SCHPO Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1
Length = 481
Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 159/251 (63%), Gaps = 19/251 (7%)
Query: 21 VGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVK 80
G+I PPP +R I+DK+A++VARNGP FE +IRQNE N KF FL DPYH YYQH++
Sbjct: 32 AGVILPPPAIREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYYQHKLT 91
Query: 81 DIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDP-PKEFEFIADPPSISA 139
+ REGK+K T + QK L + + ++P P P + F PSIS+
Sbjct: 92 EAREGKLKSHA-------TGLSTQKTSTLARPI--QKPIEATIPAPSPYLFSEPLPSISS 142
Query: 140 LDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKIL-- 197
LDLD+++LTA++ A G FL SL QKE N QFDFL+P ++L+ YF ++++QYT ++
Sbjct: 143 LDLDVLRLTARYAAVRGSSFLVSLSQKEWNNTQFDFLKPNNALYPYFMRIVQQYTSLIRE 202
Query: 198 ---IPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDW 254
P +++ ++D S +L +++ R + + E+Q+K+++ EK+++ YAQIDW
Sbjct: 203 PISSPEQELRENVRDPYS----LLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQIDW 258
Query: 255 HDFVVVETVDY 265
+DFVVVE + +
Sbjct: 259 NDFVVVEVIQF 269
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 411 KVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQ---------EKIPASKVQEHMRIG 461
+ P +QP +Q P V K + PK E +PA++++EHMR+
Sbjct: 356 QASPVLSTTTQPKVQKP----------VPKAFQPKVPMEISPFSGELVPATELEEHMRLK 405
Query: 462 LLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGE 521
LLDPRW EQR E+ + T+ + A++K+L +RTD+F V + G +I +
Sbjct: 406 LLDPRWQEQRKV---EESRKSTLNLENVNVAANMKRLVSQRTDLFDVQN-----GVEISQ 457
Query: 522 EDTRK 526
E+ +
Sbjct: 458 EEIER 462
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 27/31 (87%)
Query: 771 ISPITGEKIPASKVQEHMRIGLLDPRWVEQR 801
ISP +GE +PA++++EHMR+ LLDPRW EQR
Sbjct: 385 ISPFSGELVPATELEEHMRLKLLDPRWQEQR 415
>sp|Q86A14|SF3A1_DICDI Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum
GN=sf3a1 PE=3 SV=1
Length = 760
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 130 FIADPPS-ISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTK 188
+I D P ++ L+LD ++LTAQF+A+NG F L +E +N QFDFL+P + L+++F
Sbjct: 168 YILDVPDFMTPLELDTIRLTAQFIAKNGDSFFMELASREVKNSQFDFLKPTNHLYEWFRA 227
Query: 189 LLEQYTKILIPPKDMMFRLKDES-SSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRV 247
L+E Y +I+ PP+ + +LK S+ IL+ R +Y + +E + +++E R ++++
Sbjct: 228 LVESYAQIIYPPQGIKEQLKSNYFSNKQTILERAMNRCEYNQLKEIEEQKKEEREDEEKT 287
Query: 248 AYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGA 284
A IDWHDFV+V+T+++ + + P P T D++ A
Sbjct: 288 IIASIDWHDFVIVDTIEFNEDDLDDLPQPRTFDQLIA 324
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
E++ I+DKTA + A+ G FE++++Q E N KFNF+ GD Y+ YY++++
Sbjct: 12 ELKTIIDKTAAYAAKLGESFENKVKQREGHNAKFNFMKEGDQYYPYYRNKI 62
Score = 36.6 bits (83), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 37 TANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
TA F+A+NG F + E+ N +F+FL P + + +++ V
Sbjct: 187 TAQFIAKNGDSFFMELASREVKNSQFDFLKPTNHLYEWFRALV 229
>sp|P32524|PRP21_YEAST Pre-mRNA-splicing factor PRP21 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP21 PE=1 SV=1
Length = 280
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 35/227 (15%)
Query: 34 VDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAP 93
+ T N++ ++G EFE+++ ++E +F+F+ DP H YY K+ P
Sbjct: 12 IKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYT---------KLMNEPTD 58
Query: 94 AQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVA 153
T + + ++ +++ PP +F F IS D++++KLTA++ A
Sbjct: 59 -----TVSGEDNDRKSEREIAR--------PP-DFLFSQYDTGISRRDMEVIKLTARYYA 104
Query: 154 RNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSS 213
++ + + ++ K+ + +F+ H L + FT + QY ++ F ++ S
Sbjct: 105 KD-KSIVEQMISKDGEA-RLNFMNSSHPLHKTFTDFVAQYKRVY------SFTGQEIKKS 156
Query: 214 MAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVV 260
ILD R Y +++ + ++ + VE ++ +A I W F V
Sbjct: 157 KRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQV 203
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens
GN=CHERP PE=1 SV=3
Length = 916
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++
Sbjct: 11 ELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKL 60
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus
GN=Cherp PE=1 SV=1
Length = 936
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++
Sbjct: 11 ELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKL 60
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 8 PPPGKDE----TVSQAVVGIIYPPP-EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKF 62
PPP E T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 399 PPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMF 458
Query: 63 NFLSPG-DPYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 459 RFLFENQTPAHVYYRWKLYSILQG 482
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 8 PPPGKDE----TVSQAVVGIIYPPP-EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKF 62
PPP E T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 400 PPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMF 459
Query: 63 NFLSPG-DPYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 460 RFLFENQTPAHVYYRWKLYSILQG 483
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 8 PPPGKDE----TVSQAVVGIIYPPP-EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKF 62
PPP E T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 400 PPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMF 459
Query: 63 NFLSPG-DPYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 460 RFLFENQTPAHVYYRWKLYSILQG 483
>sp|P12297|SUWA_DROME Protein suppressor of white apricot OS=Drosophila melanogaster
GN=su(w[a]) PE=1 SV=3
Length = 963
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 IIYPPPE--VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVK 80
+ +P P+ +R+I+DKTA +V +NG +FE +R + +F+FL P + Y+ YY ++V
Sbjct: 471 LTFPVPKDSLRHIIDKTATYVIKNGRQFEETLRTKSV--DRFSFLLPANEYYPYYLYKVT 528
Query: 81 DIREGKVKE 89
+ KE
Sbjct: 529 GDVDAASKE 537
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 33 IVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAP 91
I++KTA F+A G + E I+ + N +F+FL+ G YY+H + I+ K AP
Sbjct: 234 IIEKTARFIATQGAQMEILIKAKQANNTQFDFLTQGGHLQPYYRHLLAAIKAAKFPPAP 292
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 144 IVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPP 200
I++ TA+F+A G + K+ N QFDFL L Y+ LL PP
Sbjct: 234 IIEKTARFIATQGAQMEILIKAKQANNTQFDFLTQGGHLQPYYRHLLAAIKAAKFPP 290
>sp|Q8IWZ8|SUGP1_HUMAN SURP and G-patch domain-containing protein 1 OS=Homo sapiens
GN=SUGP1 PE=1 SV=2
Length = 645
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 12 KDETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPG 68
K+ SQA + PP EV+N+ +K A F+A GPE E+ QN N F+FL P
Sbjct: 243 KEAQKSQAASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPN 302
Query: 69 DPYHAYYQHRVKDIREGKV 87
+ YY+ ++++ R+ K
Sbjct: 303 SQGYKYYRQKLEEFRKAKA 321
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 41/176 (23%)
Query: 24 IYPP--PEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPY-HAYYQHRVK 80
+ PP E R +++K A FVA GPE E ++ NP F FL + YY+ +V
Sbjct: 180 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVA 239
Query: 81 DIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISAL 140
+IR KEA QK Q ++V+ PP++ E
Sbjct: 240 EIR----KEA-------------QKSQAASQKVS---------PPEDEEVK--------- 264
Query: 141 DLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFL-RPQHSLFQYFTKLLEQYTK 195
++ + A+F+A G T +Q + N F FL P ++Y+ + LE++ K
Sbjct: 265 --NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRK 318
>sp|Q68FU8|SUGP1_RAT SURP and G-patch domain-containing protein 1 OS=Rattus norvegicus
GN=Sugp1 PE=2 SV=1
Length = 644
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 39/169 (23%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPY-HAYYQHRVKDIREGKV 87
E R +++K A FVA GPE E ++ NP F FL + YY+ +V +IR
Sbjct: 184 ETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRKKVAEIR---- 239
Query: 88 KEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKL 147
KEA P Q T++ P+D + ++ +
Sbjct: 240 KEAQKP------------------QAATQKVSPPEDEEAK---------------NLAEK 266
Query: 148 TAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSLFQYFTKLLEQYTK 195
A+F+A G T +Q + N F FL P ++Y+ + LE++ K
Sbjct: 267 LARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYKQKLEEFRK 315
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 18 QAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPGDPYHAY 74
QA + PP E +N+ +K A F+A GPE E+ QN N F+FL P + Y
Sbjct: 246 QAATQKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRY 305
Query: 75 YQHRVKDIRE---GKVKEAPAPA 94
Y+ ++++ R+ G PAP
Sbjct: 306 YKQKLEEFRKAKAGSTGSLPAPV 328
>sp|Q8CH02|SUGP1_MOUSE SURP and G-patch domain-containing protein 1 OS=Mus musculus
GN=Sugp1 PE=1 SV=1
Length = 643
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPY-HAYYQHRVKDIREGKV 87
E R +++K A FVA GPE E ++ NP F FL + YY+ +V +IR
Sbjct: 183 ETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIR---- 238
Query: 88 KEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKL 147
KEA QK Q ++V+ PP++ E ++ +
Sbjct: 239 KEA-------------QKPQAATQKVS---------PPEDEE-----------AKNLAEK 265
Query: 148 TAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSLFQYFTKLLEQYTK 195
A+F+A G T +Q + N F FL P ++Y+ + L+++ K
Sbjct: 266 LARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRK 314
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 18 QAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPGDPYHAY 74
QA + PP E +N+ +K A F+A GPE E+ QN N F+FL P + Y
Sbjct: 245 QAATQKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRY 304
Query: 75 YQHRVKDIREGKVKEA---PAPA 94
Y+ ++ + R+ K PAPA
Sbjct: 305 YRQKLDEFRKAKAGSTGSFPAPA 327
>sp|Q12872|SFSWA_HUMAN Splicing factor, suppressor of white-apricot homolog OS=Homo
sapiens GN=SFSWAP PE=1 SV=3
Length = 951
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
+V+ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 455 DVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQPWHQYNAYYEFK 502
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 144 IVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I++ TA FV R G F L K+ RN QFDFLR H L Y+
Sbjct: 211 IIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYY 253
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TA+FV R G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 144 IVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
++ A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 459 VIDKLAEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 499
>sp|D3ZTQ1|SFSWA_RAT Splicing factor, suppressor of white-apricot homolog OS=Rattus
norvegicus GN=Sfswap PE=2 SV=1
Length = 945
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 144 IVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I++ TA FV + G F L K+ RN QFDFLR H L Y+
Sbjct: 211 IIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYY 253
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 32 NIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 457 PVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 501
Score = 33.5 bits (75), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 149 AQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 463 AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 498
>sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog OS=Mus
musculus GN=Sfswap PE=1 SV=2
Length = 945
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 144 IVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I++ TA FV + G F L K+ RN QFDFLR H L Y+
Sbjct: 211 IIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYY 253
Score = 41.2 bits (95), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 32 NIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 457 PVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 501
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 149 AQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 463 AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 498
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,174,577
Number of Sequences: 539616
Number of extensions: 20385295
Number of successful extensions: 285796
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 3175
Number of HSP's that attempted gapping in prelim test: 147451
Number of HSP's gapped (non-prelim): 82027
length of query: 910
length of database: 191,569,459
effective HSP length: 127
effective length of query: 783
effective length of database: 123,038,227
effective search space: 96338931741
effective search space used: 96338931741
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)