Query psy10054
Match_columns 910
No_of_seqs 346 out of 627
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 16:44:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_B PRE-mRNA-splicing facto 100.0 3.6E-49 1.2E-53 386.3 10.6 146 136-290 2-147 (152)
2 2dt7_B Splicing factor 3 subun 99.9 2.3E-25 8E-30 199.7 8.2 78 118-195 8-85 (85)
3 2e5z_A SFRS8 protein, splicing 99.9 1.8E-23 6.1E-28 189.2 8.0 76 14-91 8-83 (90)
4 2e60_A SFRS8 protein, splicing 99.8 1.1E-21 3.9E-26 180.9 8.7 79 15-93 11-90 (101)
5 1x4o_A Splicing factor 4; stru 99.8 2.5E-21 8.6E-26 171.0 6.0 66 23-88 8-76 (78)
6 2dt6_A Splicing factor 3 subun 99.8 1.3E-20 4.6E-25 160.5 6.8 61 29-89 2-62 (64)
7 1ug0_A Splicing factor 4; SURP 99.8 5E-20 1.7E-24 166.2 5.0 61 28-88 25-86 (88)
8 2dt7_B Splicing factor 3 subun 99.7 1.3E-18 4.3E-23 156.2 5.4 64 20-83 17-84 (85)
9 2dt6_A Splicing factor 3 subun 99.6 2.3E-15 8E-20 128.2 6.3 55 142-196 4-58 (64)
10 2e60_A SFRS8 protein, splicing 99.5 1.3E-14 4.5E-19 134.0 8.9 62 138-199 24-85 (101)
11 1ug0_A Splicing factor 4; SURP 99.4 2E-13 6.9E-18 123.2 5.3 61 138-198 24-85 (88)
12 1x4o_A Splicing factor 4; stru 99.4 4.2E-13 1.4E-17 118.6 6.7 57 140-196 16-73 (78)
13 2e5z_A SFRS8 protein, splicing 99.3 2.2E-12 7.6E-17 116.9 7.2 55 142-198 25-79 (90)
14 4dgw_B PRE-mRNA-splicing facto 99.2 1.2E-11 4.2E-16 121.5 5.4 57 25-84 3-59 (152)
15 1x4p_A Putative splicing facto 98.5 4.6E-08 1.6E-12 83.3 2.2 59 27-87 4-63 (66)
16 1we7_A SF3A1 protein; structur 96.2 0.0016 5.4E-08 60.3 2.2 36 839-874 79-114 (115)
17 1we6_A Splicing factor, putati 95.6 0.0037 1.3E-07 57.4 1.9 35 839-873 75-109 (111)
18 1x4p_A Putative splicing facto 95.4 0.016 5.4E-07 49.8 4.6 53 143-197 9-62 (66)
19 3k9o_B Ubiquitin, UBB+1; E2-25 94.7 0.013 4.3E-07 51.7 2.4 41 839-879 45-85 (96)
20 1ndd_A NEDD8, protein (ubiquit 94.3 0.018 6.2E-07 47.9 2.4 33 839-871 44-76 (76)
21 3rt3_B Ubiquitin-like protein 93.5 0.028 9.6E-07 53.9 2.4 34 839-872 125-158 (159)
22 3a9j_A Ubiquitin; protein comp 93.5 0.034 1.2E-06 46.2 2.5 33 839-871 44-76 (76)
23 4fbj_B NEDD8; effector-HOST ta 93.2 0.031 1.1E-06 49.1 1.9 35 839-873 44-78 (88)
24 2uyz_B Small ubiquitin-related 93.2 0.027 9.3E-07 47.9 1.5 33 839-871 47-79 (79)
25 1sif_A Ubiquitin; hydrophobic 93.0 0.036 1.2E-06 48.7 2.1 34 839-872 53-86 (88)
26 3dbh_I NEDD8; cell cycle, acti 92.8 0.043 1.5E-06 47.3 2.1 33 839-871 56-88 (88)
27 4hcn_B Polyubiquitin, ubiquiti 92.6 0.047 1.6E-06 48.9 2.2 33 839-871 66-98 (98)
28 1wgd_A Homocysteine-responsive 92.1 0.05 1.7E-06 48.1 1.7 34 840-873 56-91 (93)
29 1wyw_B Ubiquitin-like protein 92.1 0.05 1.7E-06 48.8 1.7 33 839-871 65-97 (97)
30 3n3k_B Ubiquitin; hydrolase, p 91.9 0.06 2.1E-06 45.9 2.0 34 839-872 47-80 (85)
31 3u30_A Ubiquitin, linear DI-ub 91.7 0.057 2E-06 52.7 1.8 33 839-871 140-172 (172)
32 3mtn_B UBA80, ubcep1, ubiquiti 91.7 0.076 2.6E-06 45.2 2.3 34 839-872 47-80 (85)
33 2kan_A Uncharacterized protein 91.5 0.073 2.5E-06 47.7 2.1 35 839-873 58-93 (94)
34 2l7r_A Ubiquitin-like protein 91.3 0.066 2.2E-06 47.6 1.6 33 839-871 61-93 (93)
35 1wy8_A NP95-like ring finger p 91.2 0.077 2.6E-06 46.1 1.9 34 839-872 53-86 (89)
36 3u5c_f 40S ribosomal protein S 91.1 0.04 1.4E-06 54.0 0.0 37 839-875 44-80 (152)
37 3phx_B Ubiquitin-like protein 90.9 0.11 3.7E-06 44.1 2.5 32 839-870 48-79 (79)
38 3vdz_A Ubiquitin-40S ribosomal 90.8 0.093 3.2E-06 48.3 2.1 33 839-871 79-111 (111)
39 1yx5_B Ubiquitin; proteasome, 90.7 0.11 3.7E-06 46.2 2.5 35 839-873 44-78 (98)
40 2i5o_A DNA polymerase ETA; zin 90.6 0.12 4.3E-06 40.3 2.4 26 766-791 6-31 (39)
41 3l0w_B Monoubiquitinated proli 90.6 0.1 3.6E-06 51.6 2.4 38 839-876 44-81 (169)
42 1wh3_A 59 kDa 2'-5'-oligoadeny 90.5 0.094 3.2E-06 45.2 1.8 34 839-872 51-84 (87)
43 1se9_A Ubiquitin family; ubiqu 89.1 0.19 6.3E-06 48.3 2.7 36 839-874 68-109 (126)
44 2ojr_A Ubiquitin; lanthide-bin 88.8 0.16 5.6E-06 46.5 2.1 33 839-871 79-111 (111)
45 2hj8_A Interferon-induced 17 k 88.6 0.12 4.2E-06 45.2 1.0 35 839-873 48-82 (88)
46 2kdi_A Ubiquitin, vacuolar pro 87.9 0.29 9.9E-06 45.3 3.2 38 839-876 53-90 (114)
47 3q3f_A Ribonuclease/ubiquitin 87.2 0.24 8.2E-06 50.3 2.3 36 839-874 149-184 (189)
48 1v5o_A 1700011N24RIK protein; 87.1 0.32 1.1E-05 43.9 2.9 39 839-877 55-94 (102)
49 3b08_A Polyubiquitin-C, ubiqui 86.4 0.3 1E-05 45.8 2.4 33 839-871 120-152 (152)
50 3u5e_m 60S ribosomal protein L 86.1 0.15 5E-06 48.0 0.1 34 839-872 44-77 (128)
51 1wx8_A Riken cDNA 4931431F19; 85.6 0.21 7.2E-06 44.1 0.8 34 839-872 60-93 (96)
52 1j8c_A Ubiquitin-like protein 84.9 0.35 1.2E-05 45.7 2.0 35 839-873 75-109 (125)
53 4dwf_A HLA-B-associated transc 84.2 0.42 1.5E-05 41.5 2.1 34 839-873 49-82 (90)
54 1yqb_A Ubiquilin 3; structural 83.9 0.4 1.4E-05 43.3 1.9 34 839-872 65-98 (100)
55 3b1l_X E3 ubiquitin-protein li 83.9 0.22 7.7E-06 41.6 0.0 32 839-870 44-75 (76)
56 1wx7_A Ubiquilin 3; ubiquitin- 82.3 0.69 2.4E-05 41.8 2.8 36 839-874 60-95 (106)
57 3v6c_B Ubiquitin; structural g 81.0 0.65 2.2E-05 40.6 2.1 31 839-869 61-91 (91)
58 2gow_A HCG-1 protein, ubiquiti 78.9 1.2 4E-05 42.5 3.2 38 838-875 68-107 (125)
59 3u30_A Ubiquitin, linear DI-ub 78.8 0.9 3.1E-05 44.2 2.5 34 839-872 64-97 (172)
60 4eew_A Large proline-rich prot 76.5 1 3.6E-05 38.8 2.0 28 839-867 61-88 (88)
61 3rt3_B Ubiquitin-like protein 75.8 1.2 4E-05 42.6 2.3 32 840-871 48-81 (159)
62 1uel_A HHR23B, UV excision rep 74.1 1.7 5.7E-05 38.5 2.7 30 839-868 47-76 (95)
63 2faz_A Ubiquitin-like containi 73.5 1.4 4.7E-05 37.0 1.9 29 839-867 48-76 (78)
64 2wyq_A HHR23A, UV excision rep 73.0 1.7 6E-05 36.9 2.4 29 839-867 52-80 (85)
65 2dzi_A Ubiquitin-like protein 70.8 1.4 4.9E-05 36.9 1.4 29 839-867 51-79 (81)
66 3b08_A Polyubiquitin-C, ubiqui 67.5 2.5 8.7E-05 39.4 2.5 32 840-871 45-76 (152)
67 4b6w_A Tubulin-specific chaper 67.4 1.7 5.8E-05 38.5 1.1 26 841-866 57-82 (86)
68 2klc_A Ubiquilin-1; ubiquitin- 67.2 2.9 0.0001 37.6 2.7 33 839-871 68-100 (101)
69 2bwf_A Ubiquitin-like protein 67.2 2.6 8.8E-05 35.0 2.2 29 839-867 47-75 (77)
70 1wjn_A Tubulin-folding protein 66.8 2 7E-05 38.1 1.6 24 844-867 69-92 (97)
71 1ttn_A DC-UBP, dendritic cell- 66.4 2.2 7.4E-05 38.7 1.7 32 839-870 67-98 (106)
72 1wgh_A Ubiquitin-like 3, HCG-1 65.5 3 0.0001 39.2 2.5 38 838-875 67-106 (116)
73 3m62_B UV excision repair prot 64.1 2.6 8.9E-05 38.3 1.7 30 839-868 45-74 (106)
74 1wia_A Hypothetical ubiquitin- 62.7 2.9 9.9E-05 36.7 1.7 32 839-870 48-80 (95)
75 3plu_A Ubiquitin-like modifier 62.6 2.8 9.7E-05 38.3 1.7 27 839-865 65-91 (93)
76 2fnj_B Transcription elongatio 62.6 2.6 8.9E-05 39.9 1.5 36 840-876 46-88 (118)
77 2kk8_A Uncharacterized protein 62.6 2.5 8.7E-05 36.8 1.3 28 840-867 55-83 (84)
78 2kjr_A CG11242; UBL, ubiquitin 60.2 3.3 0.00011 37.3 1.7 21 845-865 73-93 (95)
79 1x1m_A Ubiquitin-like protein 60.2 3.1 0.0001 37.8 1.5 30 839-868 71-100 (107)
80 2kdb_A Homocysteine-responsive 58.5 2.6 8.7E-05 38.4 0.6 26 839-864 71-98 (99)
81 4ajy_B Transcription elongatio 57.0 6.3 0.00022 37.4 3.1 33 839-872 45-84 (118)
82 3m63_B Ubiquitin domain-contai 56.5 3.6 0.00012 37.1 1.3 29 839-867 71-99 (101)
83 4e74_A Plexin-A4; RBD, structu 55.7 3.5 0.00012 39.2 1.1 24 845-868 92-115 (117)
84 1wf9_A NPL4 family protein; be 55.7 5.3 0.00018 36.3 2.3 36 845-883 72-107 (107)
85 2xzm_9 RPS31E; ribosome, trans 55.3 2.7 9.4E-05 42.8 0.3 31 839-874 44-74 (189)
86 2k5c_A Uncharacterized protein 55.0 4.8 0.00016 36.3 1.7 23 768-790 7-29 (95)
87 2daf_A FLJ35834 protein; hypot 53.9 4.9 0.00017 38.3 1.7 35 839-880 60-94 (118)
88 2io1_B Small ubiquitin-related 53.0 6.3 0.00021 35.4 2.2 35 839-873 51-85 (94)
89 1v6e_A Cytoskeleton-associated 53.0 7.9 0.00027 34.2 2.9 21 845-865 65-85 (95)
90 4e71_A Plexin-B2, MM1; transme 51.8 4.4 0.00015 38.2 1.1 22 845-866 88-109 (111)
91 2kd0_A LRR repeats and ubiquit 50.3 5.8 0.0002 34.5 1.5 27 840-866 56-82 (85)
92 3h6n_A Plexin-D1; structural g 50.1 6 0.00021 38.1 1.7 26 841-867 79-104 (127)
93 2d07_B Ubiquitin-like protein 50.1 6.2 0.00021 35.3 1.7 34 838-871 60-93 (93)
94 1wgg_A Ubiquitin carboxyl-term 48.5 6.7 0.00023 35.0 1.7 26 840-866 52-77 (96)
95 1t0y_A Tubulin folding cofacto 47.9 7.7 0.00026 36.1 2.1 21 846-866 65-85 (122)
96 1v5t_A 8430435I17RIK protein; 47.8 5.5 0.00019 34.9 1.0 27 840-866 55-81 (90)
97 1wju_A NEDD8 ultimate buster-1 47.7 6 0.00021 36.4 1.2 32 839-871 63-94 (100)
98 1oqy_A HHR23A, UV excision rep 46.2 8.1 0.00028 42.9 2.2 35 839-873 54-89 (368)
99 4a20_A Ubiquitin-like protein 44.8 10 0.00036 34.3 2.4 29 839-867 66-95 (98)
100 2r2o_A Plexin-B1; effector dom 44.2 7.3 0.00025 38.0 1.3 27 841-868 103-129 (138)
101 2kj6_A Tubulin folding cofacto 43.7 9.2 0.00032 34.6 1.8 21 845-865 73-93 (97)
102 2io0_B Small ubiquitin-related 42.3 11 0.00037 33.7 2.1 34 839-872 49-82 (91)
103 2eke_C Ubiquitin-like protein 39.2 11 0.00039 34.8 1.7 34 838-871 73-106 (106)
104 2lxa_A Ubiquitin-like protein 35.7 10 0.00034 33.7 0.7 29 839-867 48-77 (87)
105 3kuz_A Plexin-C1; structural g 35.5 14 0.00049 35.5 1.8 22 845-866 104-125 (126)
106 1v2y_A 3300001G02RIK protein; 35.5 17 0.00056 33.6 2.2 33 839-871 66-99 (105)
107 2dzm_A FAS-associated factor 1 35.4 10 0.00034 34.7 0.7 24 845-868 59-82 (100)
108 1wz0_A Ubiquitin-like protein 35.1 13 0.00043 34.2 1.3 35 838-872 67-101 (104)
109 3ai5_A Yeast enhanced green fl 31.8 18 0.0006 39.3 2.0 31 839-869 277-307 (307)
110 2d9k_A FLN29 gene product; zin 31.8 16 0.00056 30.6 1.4 20 769-788 17-36 (75)
111 2elp_A Zinc finger protein 406 31.3 32 0.0011 23.6 2.7 25 767-791 7-33 (37)
112 3mhs_C SAGA-associated factor 30.7 31 0.0011 32.0 3.1 23 766-788 67-89 (99)
113 1wxv_A BAG-family molecular ch 28.1 19 0.00066 31.2 1.3 28 840-867 56-84 (92)
114 2m0f_A Zinc finger and BTB dom 27.2 36 0.0012 21.4 2.2 22 770-791 3-25 (29)
115 4dbg_A Ranbp-type and C3HC4-ty 27.2 29 0.00098 32.2 2.3 29 840-868 71-100 (105)
116 2kvh_A Zinc finger and BTB dom 27.2 46 0.0016 21.0 2.7 22 769-790 3-25 (27)
117 2elt_A Zinc finger protein 406 25.8 46 0.0016 22.4 2.7 25 767-791 7-32 (36)
118 2elr_A Zinc finger protein 406 25.7 45 0.0015 22.5 2.6 25 767-791 7-32 (36)
119 2elq_A Zinc finger protein 406 25.6 47 0.0016 22.5 2.7 25 767-791 7-32 (36)
120 1znf_A 31ST zinc finger from X 25.3 41 0.0014 21.0 2.2 22 770-791 2-24 (27)
121 2m0d_A Zinc finger and BTB dom 25.2 45 0.0015 21.0 2.4 23 769-791 3-26 (30)
122 1srk_A Zinc finger protein ZFP 24.4 53 0.0018 22.0 2.8 25 767-791 5-30 (35)
123 2els_A Zinc finger protein 406 24.2 50 0.0017 22.4 2.6 25 767-791 7-32 (36)
124 2dzj_A Synaptic glycoprotein S 23.6 22 0.00074 31.3 0.7 25 840-864 61-85 (88)
125 1l8d_A DNA double-strand break 23.6 31 0.0011 31.2 1.8 13 769-781 47-59 (112)
126 3vhs_A ATPase wrnip1; zinc fin 23.5 38 0.0013 24.4 1.8 21 769-789 6-26 (29)
127 2kvf_A Zinc finger and BTB dom 22.4 48 0.0016 20.9 2.1 22 769-790 3-25 (28)
128 2m0e_A Zinc finger and BTB dom 22.3 50 0.0017 20.6 2.2 22 770-791 3-25 (29)
129 1ard_A Yeast transcription fac 21.7 50 0.0017 20.8 2.1 22 770-791 3-25 (29)
130 2elx_A Zinc finger protein 406 21.1 76 0.0026 21.0 3.0 25 767-791 5-30 (35)
131 1v86_A DNA segment, CHR 7, way 20.8 28 0.00095 30.8 0.9 26 840-866 61-86 (95)
No 1
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-49 Score=386.26 Aligned_cols=146 Identities=21% Similarity=0.425 Sum_probs=123.9
Q ss_pred CCChhhHHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCCCCCccHHHHHHHHHHHhhcCCChhHHHHhhhhcccHH
Q psy10054 136 SISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMA 215 (910)
Q Consensus 136 ~Isa~DLdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP~Hslf~yF~~lVeqYskVL~p~k~li~kLk~~~~~k~ 215 (910)
+||++||+|||+||+||||||. |+..|++|+. ||||+||+|+|+||+||++||+||++||+|+. +++..+++
T Consensus 2 gis~~dldIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~p~h~l~~~F~~lv~qY~~vl~~~~------~~~~~~~~ 73 (152)
T 4dgw_B 2 GISRRDMEVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMNSSHPLHKTFTDFVAQYKRVYSFTG------QEIKKSKR 73 (152)
T ss_dssp --CHHHHHHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGSTTSTTHHHHHHHHHHHHHHTTSTT------CCCCCCHH
T ss_pred CCCHHHHHHHHHHHHHheecCH-HHHHHHHhcc-CcccccCCCCCccHHHHHHHHHHHHHHHCccc------ccccccHH
Confidence 7999999999999999999999 9999999999 99999999999999999999999999999985 56778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcceEEEEEEEcCCCCCCCCCCCCChhHHHHHhHHHH
Q psy10054 216 AILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQE 290 (910)
Q Consensus 216 ~ILer~~~RaEw~k~qe~~kkKeeee~E~Eri~fA~IDWhDFvVVETIdF~ddE~~eLPpP~tl~eL~~rsL~q~ 290 (910)
+||+||++|++|.+++++++++++++.|++|++||+|||||||||+||+|+++| .+||||+||++|++|+|+++
T Consensus 74 ~iL~r~~~Rae~~k~~~~~~~k~e~~~e~er~~fa~IDW~dFvVVeTI~F~~~d-~~LPpP~~~~~l~~~sl~~~ 147 (152)
T 4dgw_B 74 TILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDT-EIFEGSLDLEQMRLRRVQTG 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCCCCCBC--------------CCTTTSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccEEEEEEecCccc-ccCCCCCCHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999877 89999999999999999886
No 2
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.92 E-value=2.3e-25 Score=199.72 Aligned_cols=78 Identities=87% Similarity=1.349 Sum_probs=74.6
Q ss_pred CCCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCCCCCccHHHHHHHHHHHh
Q psy10054 118 PFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTK 195 (910)
Q Consensus 118 ~~~P~~PPp~feFs~~pP~Isa~DLdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP~Hslf~yF~~lVeqYsk 195 (910)
..+|+.|||+|.|++.||+||++||+||++||+||||||..|+..|++|+.+||||+||+|+|++|.||+++|++|++
T Consensus 8 ~~~p~~Pp~~~~f~~~pp~i~~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~Y~~ 85 (85)
T 2dt7_B 8 TIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 85 (85)
T ss_dssp CCCSCCCCCCSCCCSSCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred ccCCCCcCCCceeccCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHHHhC
Confidence 346778889999999999999999999999999999999999999999999999999999999999999999999985
No 3
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=189.15 Aligned_cols=76 Identities=34% Similarity=0.664 Sum_probs=71.0
Q ss_pred CCccCCcccccCCChhHHHHHHHHHHHHHhccHHHHHHHHHhccCCCCccccCCCCCCChHHHHHHHHHhcCCCCCCC
Q psy10054 14 ETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAP 91 (910)
Q Consensus 14 ~~~~k~~~gII~PPpeIR~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~p~dPYH~YYq~kL~e~r~g~~~~~~ 91 (910)
.++.+++++||+|||+||.||||||.||||||.+||++||++ +||+|+||+++||||+||+|||.+|++|...+..
T Consensus 8 ~~~~~p~~~ii~PPpdir~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~~~pyh~YY~~kl~e~~~~~~~~~~ 83 (90)
T 2e5z_A 8 TSALAPVAAIIPPPPDVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGDSM 83 (90)
T ss_dssp CCCCCCCCSCCCCCTTTHHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSSSCSTHHHHHHHHHHHHHHTCCCCC
T ss_pred cccCCCCCCccCCCHHHHHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCCCCcccHHHHHHHHHHHhccCCCCc
Confidence 557889999999999999999999999999999999999987 8999999999999999999999999999877553
No 4
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=180.92 Aligned_cols=79 Identities=25% Similarity=0.491 Sum_probs=72.6
Q ss_pred CccCCcccccCCCh-hHHHHHHHHHHHHHhccHHHHHHHHHhccCCCCccccCCCCCCChHHHHHHHHHhcCCCCCCCCc
Q psy10054 15 TVSQAVVGIIYPPP-EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAP 93 (910)
Q Consensus 15 ~~~k~~~gII~PPp-eIR~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~p~dPYH~YYq~kL~e~r~g~~~~~~~~ 93 (910)
...++|.+|++||+ +++.||+|||.||||||.+||.+||+++++||+|+||+++||||.||+|+|.+|++|........
T Consensus 11 ~~~~~P~~v~~P~~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~~~~~~h~YY~~kl~~~~~g~~~~~~~~ 90 (101)
T 2e60_A 11 LGLSVPSDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAEN 90 (101)
T ss_dssp SSSCCCSSSCCCSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGSTTSTHHHHHHHHHHHHHHTSCCCSSCS
T ss_pred ccCCCCCCccCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCCCCCCCcHHHHHHHHHHHcCCCCccccc
Confidence 35568999999987 89999999999999999999999999999999999999999999999999999999988765443
No 5
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.83 E-value=2.5e-21 Score=170.99 Aligned_cols=66 Identities=33% Similarity=0.611 Sum_probs=60.8
Q ss_pred ccCCCh--hHHHHHHHHHHHHHhccHHHHHHHHHhccCCCCccccC-CCCCCChHHHHHHHHHhcCCCC
Q psy10054 23 IIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLS-PGDPYHAYYQHRVKDIREGKVK 88 (910)
Q Consensus 23 II~PPp--eIR~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~-p~dPYH~YYq~kL~e~r~g~~~ 88 (910)
+|+||+ +||.||||||.||||||++||++||+++++||+|+||+ ++||||.||+|||.+|+.|...
T Consensus 8 ~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~g~~~ 76 (78)
T 1x4o_A 8 KVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKSGPS 76 (78)
T ss_dssp CSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHCCCCC
T ss_pred CCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHhcCCC
Confidence 345554 89999999999999999999999999999999999998 8999999999999999998765
No 6
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.81 E-value=1.3e-20 Score=160.46 Aligned_cols=61 Identities=79% Similarity=1.328 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHhccCCCCccccCCCCCCChHHHHHHHHHhcCCCCC
Q psy10054 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKE 89 (910)
Q Consensus 29 eIR~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~p~dPYH~YYq~kL~e~r~g~~~~ 89 (910)
+||.||+|||.||||||++||.+|++++++||+|+||+++||||.||+|+|.+|+.|...+
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g~~~~ 62 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHTCSCC
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCCCCCCchHHHHHHHHHHcCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999998764
No 7
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.78 E-value=5e-20 Score=166.17 Aligned_cols=61 Identities=34% Similarity=0.615 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHhccCCCCccccCC-CCCCChHHHHHHHHHhcCCCC
Q psy10054 28 PEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSP-GDPYHAYYQHRVKDIREGKVK 88 (910)
Q Consensus 28 peIR~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~p-~dPYH~YYq~kL~e~r~g~~~ 88 (910)
+++|.||+|||.||||||++||.+||+++++||+|+||++ +||||+||+|||.+|+.|...
T Consensus 25 ~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g~~~ 86 (88)
T 1ug0_A 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPS 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHccCCC
Confidence 3799999999999999999999999999999999999997 899999999999999998764
No 8
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.73 E-value=1.3e-18 Score=156.19 Aligned_cols=64 Identities=34% Similarity=0.609 Sum_probs=60.2
Q ss_pred cccccCCChhHH----HHHHHHHHHHHhccHHHHHHHHHhccCCCCccccCCCCCCChHHHHHHHHHh
Q psy10054 20 VVGIIYPPPEVR----NIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83 (910)
Q Consensus 20 ~~gII~PPpeIR----~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~p~dPYH~YYq~kL~e~r 83 (910)
..+++++||.|. .||++||.||||||..||..|++++.+||+|+||+++|+||.||+|+|.+|+
T Consensus 17 ~~~f~~~pp~i~~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~Y~ 84 (85)
T 2dt7_B 17 EFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYT 84 (85)
T ss_dssp CSCCCSSCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHC
T ss_pred CceeccCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHHHh
Confidence 357788888887 8999999999999999999999999999999999999999999999999986
No 9
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.56 E-value=2.3e-15 Score=128.21 Aligned_cols=55 Identities=35% Similarity=0.586 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCCCCCccHHHHHHHHHHHhh
Q psy10054 142 LDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKI 196 (910)
Q Consensus 142 LdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP~Hslf~yF~~lVeqYskV 196 (910)
.+||++||+|||+||..|+..|++|+.+||+|+||+|+|++|.||+++|.+|+.-
T Consensus 4 ~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g 58 (64)
T 2dt6_A 4 RNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEG 58 (64)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCCCCCCchHHHHHHHHHHcC
Confidence 4799999999999999999999999999999999999999999999999999864
No 10
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=133.99 Aligned_cols=62 Identities=35% Similarity=0.446 Sum_probs=57.9
Q ss_pred ChhhHHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCCCCCccHHHHHHHHHHHhhcCC
Q psy10054 138 SALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIP 199 (910)
Q Consensus 138 sa~DLdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP~Hslf~yF~~lVeqYskVL~p 199 (910)
+...++||++||+||||||..|+..|+.|+.+||+|+||+++|++|.||+++|.+|+.-...
T Consensus 24 ~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~~~~~~h~YY~~kl~~~~~g~~~ 85 (101)
T 2e60_A 24 TAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYT 85 (101)
T ss_dssp SHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGSTTSTHHHHHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCCCCCCCcHHHHHHHHHHHcCCCC
Confidence 45788999999999999999999999999999999999999999999999999999876544
No 11
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.39 E-value=2e-13 Score=123.21 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCC-CCCccHHHHHHHHHHHhhcC
Q psy10054 138 SALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRP-QHSLFQYFTKLLEQYTKILI 198 (910)
Q Consensus 138 sa~DLdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP-~Hslf~yF~~lVeqYskVL~ 198 (910)
....+.||++||.||||||..|+..|++|+.+||+|.||.+ +|++|.||+++|.+|+.-..
T Consensus 24 d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g~~ 85 (88)
T 1ug0_A 24 GAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKSGP 85 (88)
T ss_dssp GHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHccCC
Confidence 35677999999999999999999999999999999999997 99999999999999987543
No 12
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.38 E-value=4.2e-13 Score=118.58 Aligned_cols=57 Identities=25% Similarity=0.474 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccC-CCCCccHHHHHHHHHHHhh
Q psy10054 140 LDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSLFQYFTKLLEQYTKI 196 (910)
Q Consensus 140 ~DLdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLk-P~Hslf~yF~~lVeqYskV 196 (910)
.-..||++||.|||+||..|+..|++++.+||+|.||. ++|++|.||+++|.+|+.-
T Consensus 16 ~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~g 73 (78)
T 1x4o_A 16 EAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHhc
Confidence 34589999999999999999999999999999999998 9999999999999999763
No 13
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.2e-12 Score=116.93 Aligned_cols=55 Identities=29% Similarity=0.440 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCCCCCccHHHHHHHHHHHhhcC
Q psy10054 142 LDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILI 198 (910)
Q Consensus 142 LdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP~Hslf~yF~~lVeqYskVL~ 198 (910)
..||.+||.||||||..|+..|+++ +|++|+||+++|+||.||.++|..|..-..
T Consensus 25 r~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~~~pyh~YY~~kl~e~~~~~~ 79 (90)
T 2e5z_A 25 QPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQPWHQYNAYYEFKKQFFLQKEG 79 (90)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSSSCSTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCCCCcccHHHHHHHHHHHhccC
Confidence 3799999999999999999999887 799999999999999999999999987543
No 14
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.2e-11 Score=121.50 Aligned_cols=57 Identities=14% Similarity=0.382 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHHHHHhccHHHHHHHHHhccCCCCccccCCCCCCChHHHHHHHHHhc
Q psy10054 25 YPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIRE 84 (910)
Q Consensus 25 ~PPpeIR~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~p~dPYH~YYq~kL~e~r~ 84 (910)
+.+.++ .||.+||.||||||. |+..|++++. ||+|.||+|+|+||.||.++|..|+.
T Consensus 3 is~~dl-dIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~p~h~l~~~F~~lv~qY~~ 59 (152)
T 4dgw_B 3 ISRRDM-EVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMNSSHPLHKTFTDFVAQYKR 59 (152)
T ss_dssp -CHHHH-HHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGSTTSTTHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHheecCH-HHHHHHHhcc-CcccccCCCCCccHHHHHHHHHHHHH
Confidence 344566 899999999999999 9999999999 99999999999999999999999984
No 15
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=98.46 E-value=4.6e-08 Score=83.32 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHHHhccHHHHHHHHHhccCCCCccccC-CCCCCChHHHHHHHHHhcCCC
Q psy10054 27 PPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLS-PGDPYHAYYQHRVKDIREGKV 87 (910)
Q Consensus 27 PpeIR~IIdKTA~fVAKnG~eFE~rIr~~e~~NpkFsFL~-p~dPYH~YYq~kL~e~r~g~~ 87 (910)
.|+++.+|+|.|.||+..|++-+.+-. ++.||-|.||. .+..-|.||+.||.+|+..+.
T Consensus 4 ~~~~~~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~r~~k~ 63 (66)
T 1x4p_A 4 GSSGVGTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEMQRSGP 63 (66)
T ss_dssp SCCSSHHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHHHHSSS
T ss_pred chhHHHHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999666654 56899999998 578899999999999986543
No 16
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.22 E-value=0.0016 Score=60.31 Aligned_cols=36 Identities=58% Similarity=0.952 Sum_probs=33.6
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++.|||++|
T Consensus 79 ~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 79 QYEGIFIKDSNSLAYYNMASGAVIHLALKERSGPSS 114 (115)
T ss_dssp EETTEEECTTSBHHHHTCCSSCEEEEEECCCSCCSC
T ss_pred EECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCCC
Confidence 367888999999999999999999999999999987
No 17
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.63 E-value=0.0037 Score=57.41 Aligned_cols=35 Identities=40% Similarity=0.599 Sum_probs=32.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|-.++|+.+|++|++.+|.+|+|.++.|||++
T Consensus 75 ~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GGk~ 109 (111)
T 1we6_A 75 SGKAGFLKDNMSLAHYNVGAGEILTLSLRERSGPS 109 (111)
T ss_dssp ECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCSSC
T ss_pred EECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCCC
Confidence 35678899999999999999999999999999976
No 18
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=95.36 E-value=0.016 Score=49.75 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccC-CCCCccHHHHHHHHHHHhhc
Q psy10054 143 DIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSLFQYFTKLLEQYTKIL 197 (910)
Q Consensus 143 dIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLk-P~Hslf~yF~~lVeqYskVL 197 (910)
++|.+.|.|||-.|..-...-. ...||-|-||. ++..-|.||...+.+|++.-
T Consensus 9 ~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~r~~k 62 (66)
T 1x4p_A 9 GTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEMQRSG 62 (66)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHHHhhc
Confidence 7899999999999998443333 45799999998 56667999999999998863
No 19
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=94.70 E-value=0.013 Score=51.74 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=30.3
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcccCCCCC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPD 879 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||.++...|+
T Consensus 45 ~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~~~~p~ 85 (96)
T 3k9o_B 45 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADLREDPD 85 (96)
T ss_dssp EETTEECCTTSBTGGGTCCTTCEEEEEECCCC---------
T ss_pred EECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCccccCCC
Confidence 47888899999999999999999999999999998877664
No 20
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=94.33 E-value=0.018 Score=47.86 Aligned_cols=33 Identities=36% Similarity=0.525 Sum_probs=28.9
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||
T Consensus 44 ~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 44 IYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp EETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 367888999999999999999999999999998
No 21
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.55 E-value=0.028 Score=53.94 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=29.7
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|+.||+.||+.+|.+|+|.++-|||.
T Consensus 125 ~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 125 TFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 5789999999999999999999999999999995
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=93.49 E-value=0.034 Score=46.20 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=30.5
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||
T Consensus 44 ~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 44 IFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp EETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred EECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 356778899999999999999999999999998
No 23
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=93.20 E-value=0.031 Score=49.10 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=29.7
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|-.++|+.+|+.|++.+|.+|.|.++-|||..
T Consensus 44 i~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 44 IYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp EETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred EECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 57899999999999999999999999999999953
No 24
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=93.20 E-value=0.027 Score=47.85 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=30.8
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|--++|+.||+.|++..|.+|.|.++-|||
T Consensus 47 ~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 47 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 678999999999999999999999999999998
No 25
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=93.04 E-value=0.036 Score=48.66 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=26.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|+.||+.|++.+|.+|.|.++-|||.
T Consensus 53 ~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 53 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp EETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred EECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4678889999999999999999999999999995
No 26
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=92.78 E-value=0.043 Score=47.25 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=31.4
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||
T Consensus 56 ~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 56 IYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 578888999999999999999999999999998
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.047 Score=48.89 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=31.3
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||
T Consensus 66 i~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 66 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp EETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 478888999999999999999999999999998
No 28
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.11 E-value=0.05 Score=48.10 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=32.0
Q ss_pred ccceeeecCCceeee--ecCCCceEEEeeecccCcc
Q psy10054 840 ETGLFFKDSNSLAYY--NITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 873 (910)
|.|-.++|..+|+.| ++.+|.+|+|.++-|||+.
T Consensus 56 ~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 56 YSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSGPS 91 (93)
T ss_dssp ETTEECCSSSCHHHHSCSSSCSEEEEEECCCCCCCC
T ss_pred ECCEECcCcCCHHHHhcCCCCCCEEEEEeCCCCCCC
Confidence 779999999999999 9999999999999999964
No 29
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=92.08 E-value=0.05 Score=48.76 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=31.6
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|--++|..||+.|++..|.+|.|.++-|||
T Consensus 65 if~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 578999999999999999999999999999998
No 30
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=91.92 E-value=0.06 Score=45.93 Aligned_cols=34 Identities=35% Similarity=0.457 Sum_probs=29.0
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||.
T Consensus 47 ~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 47 IFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp EETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred EECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4678889999999999999999999999999995
No 31
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=91.72 E-value=0.057 Score=52.69 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=26.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|..+|+.||+.+|.+|+|.++-|||
T Consensus 140 ~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 140 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred EECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 467888999999999999999999999999998
No 32
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=91.67 E-value=0.076 Score=45.21 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=31.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||.
T Consensus 47 ~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 47 IFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp EETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred EECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 3778889999999999999999999999999995
No 33
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.48 E-value=0.073 Score=47.66 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=32.1
Q ss_pred hccceeeecC-CceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDS-NSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|-.++|+ .+|+.|++.+|.+|+|.++-|||.+
T Consensus 58 i~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~~ 93 (94)
T 2kan_A 58 YYSGIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93 (94)
T ss_dssp EETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSCC
T ss_pred EECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCCC
Confidence 4678889999 9999999999999999999999964
No 34
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=91.31 E-value=0.066 Score=47.64 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=30.8
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||
T Consensus 61 i~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 61 LLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp EETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 367888999999999999999999999999998
No 35
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.20 E-value=0.077 Score=46.05 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=31.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||.
T Consensus 53 ~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 53 FYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 3668889999999999999999999999999993
No 36
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=91.12 E-value=0.04 Score=54.04 Aligned_cols=37 Identities=38% Similarity=0.561 Sum_probs=0.0
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKS 875 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (910)
.|.|-.+.|+.||+.|++.+|.+|+|.++-|||+||-
T Consensus 44 i~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp -------------------------------------
T ss_pred EECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 3678889999999999999999999999999997663
No 37
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=90.91 E-value=0.11 Score=44.10 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=30.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeeccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERG 870 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (910)
.|.|--++|+.+|+.|++.+|.+|+|.++-||
T Consensus 48 ~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 48 TFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 47888999999999999999999999999988
No 38
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=90.75 E-value=0.093 Score=48.27 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=30.3
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||
T Consensus 79 i~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 79 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 378888999999999999999999999999998
No 39
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=90.74 E-value=0.11 Score=46.23 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=30.8
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|-.++|+.+|+.|++.+|.+|.|.++-+||..
T Consensus 44 ~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~ 78 (98)
T 1yx5_B 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRD 78 (98)
T ss_dssp EETTEECCTTSBTGGGTCCTTCEEEEEECCCCC--
T ss_pred EECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCc
Confidence 36788899999999999999999999999999954
No 40
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=90.64 E-value=0.12 Score=40.27 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCceeecCCCCCccChhhHHHHhHhh
Q psy10054 766 TDEFLISPITGEKIPASKVQEHMRIG 791 (910)
Q Consensus 766 ~~~~~~~PitGe~Ip~~e~~eHmRi~ 791 (910)
.....+||.||+.||+.+++||+=+-
T Consensus 6 ~~~~~~C~~C~~~i~~~~~~EH~D~H 31 (39)
T 2i5o_A 6 AEDQVPCEKCGSLVPVWDMPEHMDYH 31 (39)
T ss_dssp CCCEEECTTTCCEEEGGGHHHHHHHH
T ss_pred cCCCcccccccCcCCcccccchhhHH
Confidence 34578999999999999999997553
No 41
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=90.58 E-value=0.1 Score=51.58 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=32.3
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcccCC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSL 876 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (910)
.|.|--++|+.+|+.|++.+|.+|+|.++-|||.+..+
T Consensus 44 i~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~v 81 (169)
T 3l0w_B 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGETI 81 (169)
T ss_dssp EETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CCE
T ss_pred EECCccccCcCcHHHcCCCCCCEEEEEEEecccccccc
Confidence 47788899999999999999999999999999998765
No 42
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.52 E-value=0.094 Score=45.22 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.3
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|--++|+.+|+.|++.+|.+|+|.++-|||.
T Consensus 51 ~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 51 EFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp EETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred EECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 3677788999999999999999999999999995
No 43
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=89.08 E-value=0.19 Score=48.26 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=33.8
Q ss_pred hccceeeecCCceeeeecCCC------ceEEEeeecccCccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPG------TKVHLQLKERGGRKK 874 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 874 (910)
.|.|=+++|+.||+-||+..| .|++|.++.|||-+|
T Consensus 68 Iy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g~~kk 109 (126)
T 1se9_A 68 ISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 109 (126)
T ss_dssp EETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCSSCCC
T ss_pred EECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCCcccc
Confidence 689999999999999999999 789999999999887
No 44
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=88.84 E-value=0.16 Score=46.50 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=29.8
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||
T Consensus 79 i~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 79 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 366888999999999999999999999999998
No 45
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=88.58 E-value=0.12 Score=45.19 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=26.7
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|--++|+.+|+.|++.+|.+|.|.++-+||+.
T Consensus 48 ~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 48 TFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp ESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred EECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 36677889999999999999999999999999974
No 46
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=87.92 E-value=0.29 Score=45.30 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=33.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcccCC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSL 876 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (910)
.|.|-.++|+.+|+.|++.+|.+|.|.++-|||..-++
T Consensus 53 i~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~~ 90 (114)
T 2kdi_A 53 IWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGGA 90 (114)
T ss_dssp EETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCSS
T ss_pred EECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceeec
Confidence 36688899999999999999999999999999964433
No 47
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=87.20 E-value=0.24 Score=50.28 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=33.3
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|||.+-
T Consensus 149 i~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~ 184 (189)
T 3q3f_A 149 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQT 184 (189)
T ss_dssp EETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCC
T ss_pred EECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcc
Confidence 478889999999999999999999999999999764
No 48
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.09 E-value=0.32 Score=43.87 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=32.5
Q ss_pred hccceeeecC-CceeeeecCCCceEEEeeecccCcccCCC
Q psy10054 839 QETGLFFKDS-NSLAYYNITPGTKVHLQLKERGGRKKSLQ 877 (910)
Q Consensus 839 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (910)
.|.|--++|. .||+.|++.+|.+|+|.++.|||..-..+
T Consensus 55 ~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~gg~~~~~~ 94 (102)
T 1v5o_A 55 VYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGLRTPGR 94 (102)
T ss_dssp EETTEEECCSSSBHHHHTCCTTEEEEECBCCCCCCSSCCC
T ss_pred EECCEECCCCcccHHHCCCCCCCEEEEEECCCCCCCCCCC
Confidence 3667778888 69999999999999999999999644433
No 49
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=86.39 E-value=0.3 Score=45.75 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=29.7
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|--++|+.||+.|++.+|.+|+|.++-|||
T Consensus 120 ~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred EECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 366888899999999999999999999999998
No 50
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=86.14 E-value=0.15 Score=48.00 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=0.6
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.+.|+.||+.|++.+|.+|+|.++-|||.
T Consensus 44 i~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ---------------------------------C
T ss_pred EECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 3678888999999999999999999999999996
No 51
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.60 E-value=0.21 Score=44.13 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|..+|+.|++.+|.+|+|.++-|||.
T Consensus 60 ~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 60 IFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 4678889999999999999999999999999983
No 52
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.92 E-value=0.35 Score=45.66 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=27.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-+||..
T Consensus 75 i~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~ 109 (125)
T 1j8c_A 75 IFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSS 109 (125)
T ss_dssp EETTEEESTTSCGGGTTCSSSEEEEEEEC------
T ss_pred EECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCC
Confidence 46788899999999999999999999999999843
No 53
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=84.21 E-value=0.42 Score=41.48 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=28.9
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|-.++|..+|+.|++ +|.+|+|.++-+++..
T Consensus 49 i~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 49 IYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQTH 82 (90)
T ss_dssp EETTEECCTTSBGGGGTC-TTEEEEEEECCCC---
T ss_pred EECCeECCCCCCHHHcCC-CCcEEEEEecCCCCCC
Confidence 578999999999999999 8999999999887754
No 54
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=83.92 E-value=0.4 Score=43.33 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|+.+|+.|++.+|.+|.|.++-|||.
T Consensus 65 i~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 65 IFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 4678889999999999999999999999999974
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=83.95 E-value=0.22 Score=41.63 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=28.9
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeeccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERG 870 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (910)
.|.|--++|+.+|+.|++.+|.+|+|.++-||
T Consensus 44 ~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 44 IFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 35677789999999999999999999999887
No 56
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.30 E-value=0.69 Score=41.80 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=32.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (910)
.|.|-.++|..+|+.|++.+|.+|+|.++-|||..-
T Consensus 60 i~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~~ 95 (106)
T 1wx7_A 60 IFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMG 95 (106)
T ss_dssp EETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSCC
T ss_pred EECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCCC
Confidence 467888899999999999999999999999999653
No 57
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=81.02 E-value=0.65 Score=40.63 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=28.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKER 869 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++-|
T Consensus 61 ~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 61 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 4788889999999999999999999998865
No 58
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=78.86 E-value=1.2 Score=42.48 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=33.8
Q ss_pred hhccceeeecCCceeeeecCCCc--eEEEeeecccCcccC
Q psy10054 838 NQETGLFFKDSNSLAYYNITPGT--KVHLQLKERGGRKKS 875 (910)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 875 (910)
-.|.|-+++|+.||+-||+..|. ||+|.++-+||-+++
T Consensus 68 LIy~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~~~~~~ 107 (125)
T 2gow_A 68 LIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPEPNS 107 (125)
T ss_dssp EESSSSEEESSCBTGGGCCCTTSEEEEEEEECSCCSSSSS
T ss_pred EEECCcCCCCCCcHHHcCCCCCCceEEEEEecCCCCcccc
Confidence 37899999999999999999765 899999999988775
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=78.81 E-value=0.9 Score=44.22 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=31.0
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++.+||-
T Consensus 64 ~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 64 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp EETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred EECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 3678889999999999999999999999999884
No 60
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=76.52 E-value=1 Score=38.82 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=25.4
Q ss_pred hccceeeecCCceeeeecCCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
.|.|-.++|+.+|+.|++ +|.+|+|.++
T Consensus 61 i~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 61 IYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 478999999999999999 8999999874
No 61
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=75.81 E-value=1.2 Score=42.59 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.6
Q ss_pred c-cceeeecCCceeeeecCCCceEEEeeec-ccC
Q psy10054 840 E-TGLFFKDSNSLAYYNITPGTKVHLQLKE-RGG 871 (910)
Q Consensus 840 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 871 (910)
| .|-.++|+.+|+.||+.+|.+|+|.++. +||
T Consensus 48 ~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 48 HPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp ETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred cCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 5 4777899999999999999999999985 544
No 62
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.06 E-value=1.7 Score=38.50 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=27.0
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeec
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKE 868 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (910)
.|.|-.++|+.+|+.|++.+|.+|.|.++.
T Consensus 47 i~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 47 IYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp EETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred EECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 477888999999999999999999998864
No 63
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=73.46 E-value=1.4 Score=37.00 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=25.8
Q ss_pred hccceeeecCCceeeeecCCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
.|.|--++|+.+|+.|++.+|.+|+|.++
T Consensus 48 ~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 48 FYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 36677889999999999999999999875
No 64
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=72.96 E-value=1.7 Score=36.89 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=26.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++
T Consensus 52 i~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 52 IYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp EETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred EECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 46788899999999999999999999875
No 65
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.82 E-value=1.4 Score=36.93 Aligned_cols=29 Identities=31% Similarity=0.474 Sum_probs=25.9
Q ss_pred hccceeeecCCceeeeecCCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
.|.|-.++|+.+|+.|++.+|.+|+|.++
T Consensus 51 ~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 51 LFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp EETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred EECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 36688899999999999999999999875
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=67.53 E-value=2.5 Score=39.37 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=28.9
Q ss_pred ccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 840 ETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
|.|--++|+.+|+.|++.+|.+|+|.++.+||
T Consensus 45 ~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred ECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 55777899999999999999999999998887
No 67
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=67.40 E-value=1.7 Score=38.50 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.5
Q ss_pred cceeeecCCceeeeecCCCceEEEee
Q psy10054 841 TGLFFKDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (910)
-|-..+|..+|++||+..|.+|+|--
T Consensus 57 ~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 57 IEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred eeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 45567899999999999999999853
No 68
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=67.23 E-value=2.9 Score=37.62 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.8
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|--++|+.+|+.|++.+|.+|+|.++-++.
T Consensus 68 i~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 68 IFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp EETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred EECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 467888999999999999999999999876653
No 69
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=67.22 E-value=2.6 Score=34.99 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=25.5
Q ss_pred hccceeeecCCceeeeecCCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
.|.|-.++|+.+|+.|++.+|.+|+|..+
T Consensus 47 ~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 47 IYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 37788899999999999999999998753
No 70
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.84 E-value=2 Score=38.14 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.7
Q ss_pred eeecCCceeeeecCCCceEEEeee
Q psy10054 844 FFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
|.+|+.+|+||++.+|.+|++..+
T Consensus 69 L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 69 LENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp CCCSSSBSGGGTCCTTCEEEEECC
T ss_pred cCCCcccHhhcCCCCCCEEEEEec
Confidence 569999999999999999998764
No 71
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.35 E-value=2.2 Score=38.67 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=27.7
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeeccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERG 870 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (910)
.|.|-.++|..+|+.|++..|.+|+|.++...
T Consensus 67 i~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 67 FFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp EETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred EECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 36788899999999999999999999986543
No 72
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.45 E-value=3 Score=39.21 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=31.7
Q ss_pred hhccceeeecCCceeeeecCCC--ceEEEeeecccCcccC
Q psy10054 838 NQETGLFFKDSNSLAYYNITPG--TKVHLQLKERGGRKKS 875 (910)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 875 (910)
-.|.|-+++|..||+-||+..| .||+|.++-++.-+++
T Consensus 67 LIy~GK~LeD~~TL~~y~I~~~~~~tlhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 67 LIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPEPNS 106 (116)
T ss_dssp EEETTEEECSSCBTTTTTCCSSCEEEEEEEECSSCSSSCC
T ss_pred EEECCcCCCCCCcHHHcCCCCCCceEEEEEccCCCCCCCc
Confidence 3689999999999999998766 6888988887776654
No 73
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=64.06 E-value=2.6 Score=38.27 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=27.5
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeec
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKE 868 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (910)
.|.|-.++|+.+|+.|++..|.+|.|.++.
T Consensus 45 i~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 45 IYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp EETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 478989999999999999999999999874
No 74
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.67 E-value=2.9 Score=36.73 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=28.2
Q ss_pred hccceeeecC-CceeeeecCCCceEEEeeeccc
Q psy10054 839 QETGLFFKDS-NSLAYYNITPGTKVHLQLKERG 870 (910)
Q Consensus 839 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 870 (910)
.|.|-.++|. .+|+.|++.+|.+|+|.++..+
T Consensus 48 i~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 48 IYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp EETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred EECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 4778899999 9999999999999999987544
No 75
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=62.62 E-value=2.8 Score=38.26 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=25.1
Q ss_pred hccceeeecCCceeeeecCCCceEEEe
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQ 865 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (910)
+|.|-.+||..||+.||+..|.+|.|-
T Consensus 65 if~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 65 QKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 678999999999999999999999984
No 76
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=62.59 E-value=2.6 Score=39.93 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.4
Q ss_pred ccceeeecCCceeeeecC-------CCceEEEeeecccCcccCC
Q psy10054 840 ETGLFFKDSNSLAYYNIT-------PGTKVHLQLKERGGRKKSL 876 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 876 (910)
|.|-=++|..||+-||+. .+++|+|.|+ +||---.|
T Consensus 46 ~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~~g~fe~l 88 (118)
T 2fnj_B 46 KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADDTFEAL 88 (118)
T ss_dssp ETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-SSSCBCCC
T ss_pred ECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-CCCceeee
Confidence 677778999999999999 7999999999 77754444
No 77
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=62.56 E-value=2.5 Score=36.84 Aligned_cols=28 Identities=14% Similarity=0.462 Sum_probs=24.9
Q ss_pred cccee-eecCCceeeeecCCCceEEEeee
Q psy10054 840 ETGLF-FKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 840 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
|.|-- ++|+.+|+.|++.+|.+|.|.++
T Consensus 55 ~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 55 VDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp ETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred ECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 66777 89999999999999999999764
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=60.21 E-value=3.3 Score=37.30 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.9
Q ss_pred eecCCceeeeecCCCceEEEe
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQ 865 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~ 865 (910)
.+|+.+|++||+.+|.+|.|.
T Consensus 73 ~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 73 DNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CCTTSBHHHHCCSSSCEEEEE
T ss_pred CCCCCCHhHCCcCCCCEEEEE
Confidence 389999999999999999874
No 79
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.20 E-value=3.1 Score=37.79 Aligned_cols=30 Identities=37% Similarity=0.625 Sum_probs=27.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeec
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKE 868 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (910)
.|.|-.++|..+|+.|++.+|.+|+|.++.
T Consensus 71 i~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 71 IYCGRKLKDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp EETTEECCTTCBHHHHTCCTTCEEEEEESS
T ss_pred EECCeECCCCCcHHHcCCCCCCEEEEEeCC
Confidence 478889999999999999999999998764
No 80
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=58.55 E-value=2.6 Score=38.38 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=24.5
Q ss_pred hccceeeecCCceeee--ecCCCceEEE
Q psy10054 839 QETGLFFKDSNSLAYY--NITPGTKVHL 864 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ 864 (910)
.|.|-.++|+.+|+.| |+..|.+|+|
T Consensus 71 Iy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 71 VYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp EETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred EECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 5889999999999999 9999999987
No 81
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=56.97 E-value=6.3 Score=37.41 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.2
Q ss_pred hccceeeecCCceeeeecCC-------CceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITP-------GTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 872 (910)
.|.|--++|+.||+-||+.+ |++|+|.|+. ||-
T Consensus 45 I~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~-~~~ 84 (118)
T 4ajy_B 45 YKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA-DDT 84 (118)
T ss_dssp EETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC-SSC
T ss_pred EeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec-CCC
Confidence 37788899999999999999 9999999998 443
No 82
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.54 E-value=3.6 Score=37.10 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=26.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
.|.|-.++|+.+|+.|++..|.+|.|.++
T Consensus 71 i~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 71 IYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp EETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 47888999999999999999999999764
No 83
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=55.75 E-value=3.5 Score=39.21 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.3
Q ss_pred eecCCceeeeecCCCceEEEeeec
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQLKE 868 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~ 868 (910)
.|--|||++|++..|++|.|..|.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 577899999999999999998763
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=55.74 E-value=5.3 Score=36.31 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=28.5
Q ss_pred eecCCceeeeecCCCceEEEeeecccCcccCCCCCccCC
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQG 883 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (910)
..|+.+|+.|++.+|.+|+|..+. + ..+..|-||.|
T Consensus 72 l~d~~tL~~~gi~~G~~L~l~~~~--~-~~~~~~~~~~~ 107 (107)
T 1wf9_A 72 ADPNLRISSLNLAHGSMVYLAYEG--E-RTIRGSGPSSG 107 (107)
T ss_dssp CCTTCBGGGTCCCTTCEEECCCSS--C-CCCCCCCCCCC
T ss_pred CCCCCCHHHCCCCCCCEEEEEeCC--C-CcccCCCCCCC
Confidence 589999999999999999998773 3 34445788765
No 85
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=55.31 E-value=2.7 Score=42.75 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=2.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCccc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (910)
.|.|-.+.|+.||+ +|++|+|.|+-|||.++
T Consensus 44 If~GK~LeD~~TLs-----~~STLhLvlRLrGG~~k 74 (189)
T 2xzm_9 44 VNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKK 74 (189)
T ss_dssp ---------------------------------CCC
T ss_pred EecCeECCCCCccc-----CCCEEEEEEecCCCccc
Confidence 47788899999999 99999999999999875
No 86
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=54.97 E-value=4.8 Score=36.28 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=19.2
Q ss_pred ceeecCCCCCccChhhHHHHhHh
Q psy10054 768 EFLISPITGEKIPASKVQEHMRI 790 (910)
Q Consensus 768 ~~~~~PitGe~Ip~~e~~eHmRi 790 (910)
-|..|||||..+.-.+|-|.|-.
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~ 29 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLI 29 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTT
T ss_pred ccccCCcCCCccCHHHHHHHHHh
Confidence 48899999999999999888743
No 87
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.90 E-value=4.9 Score=38.27 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=31.0
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcccCCCCCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDF 880 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (910)
.|.|--+||+-||.-|++.+|.+|+|-++ |..||.
T Consensus 60 Iy~GKiLKD~eTL~~~gIk~g~TIhLvi~-------s~~p~~ 94 (118)
T 2daf_A 60 RYSGKILKNNETLVQHGVKPQEIVQVEIF-------STNPDL 94 (118)
T ss_dssp EETTEEECSSCCHHHHSCCSSCEEEEEEE-------ESCTTT
T ss_pred EECCeEcCCcchHHHcCCCCCCEEEEEEe-------cCCCcc
Confidence 79999999999999999999999999865 566664
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=53.03 E-value=6.3 Score=35.42 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=32.6
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (910)
.|.|--+.+..|++-|+|..|.+|.+.++-|||.-
T Consensus 51 ~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 51 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp EETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred EECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 58899999999999999999999999999999943
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.95 E-value=7.9 Score=34.24 Aligned_cols=21 Identities=19% Similarity=0.437 Sum_probs=18.8
Q ss_pred eecCCceeeeecCCCceEEEe
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQ 865 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~ 865 (910)
.+|+.+|++||+..|.+|+|.
T Consensus 65 ~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 65 DQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCSSSBTTSSSCCTTCEEEEB
T ss_pred CCCcCCHhHCCCCCCCEEEEE
Confidence 479999999999999998875
No 90
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=51.85 E-value=4.4 Score=38.21 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.8
Q ss_pred eecCCceeeeecCCCceEEEee
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~ 866 (910)
.|--|||++|++..|++|.|..
T Consensus 88 wkrLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 88 WKRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEE
T ss_pred ceEecchhhcCCCCCCEEEEEe
Confidence 6778999999999999998864
No 91
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=50.26 E-value=5.8 Score=34.47 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.6
Q ss_pred ccceeeecCCceeeeecCCCceEEEee
Q psy10054 840 ETGLFFKDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (910)
|.|--++|+.+|+.|++.+|.+|.|..
T Consensus 56 ~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 56 FKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp ETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred ECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 678888999999999999999999865
No 92
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=50.10 E-value=6 Score=38.11 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.2
Q ss_pred cceeeecCCceeeeecCCCceEEEeee
Q psy10054 841 TGLFFKDSNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (910)
+|. .|--|||++|++..|++|.|.++
T Consensus 79 ~~~-~krLNTL~HY~V~dgatv~l~~~ 104 (127)
T 3h6n_A 79 EDG-RKKLNTLAHYKIPEGASLAMSLI 104 (127)
T ss_dssp ETT-EECCCBTTTTTCCTTCEEEEEEC
T ss_pred cCc-eeEeccccccCCCCCCEEEEEEc
Confidence 444 67789999999999999999865
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=50.08 E-value=6.2 Score=35.30 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=29.2
Q ss_pred hhccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 838 NQETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
=.|.|--|.++.|++-|+|..|.+|.+.++-|||
T Consensus 60 f~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 60 FRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3688999999999999999999999999999998
No 94
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.45 E-value=6.7 Score=35.03 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.9
Q ss_pred ccceeeecCCceeeeecCCCceEEEee
Q psy10054 840 ETGLFFKDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (910)
|.|-.++|. +|+.||+..|.+|+|..
T Consensus 52 ~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 52 VKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp ETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred ECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 788899999 99999999999999964
No 95
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=47.91 E-value=7.7 Score=36.10 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.6
Q ss_pred ecCCceeeeecCCCceEEEee
Q psy10054 846 KDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~ 866 (910)
+|+.+|++||+.+|.+|+|..
T Consensus 65 ~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 65 DGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp CCSSBTTTTTCCSSEEEEEEE
T ss_pred CCcCCHHHCCCCCCCEEEEEe
Confidence 799999999999999999876
No 96
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=47.77 E-value=5.5 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.6
Q ss_pred ccceeeecCCceeeeecCCCceEEEee
Q psy10054 840 ETGLFFKDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (910)
|.|-.++|..+|+.||+..|.+|+|..
T Consensus 55 ~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 55 VKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp ETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred cCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 678889999999999999999999963
No 97
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.68 E-value=6 Score=36.40 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=28.5
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-=++|..||+-||+.+|.+| +.|.=||.
T Consensus 63 I~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 63 VINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 488988999999999999999999 77777875
No 98
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=46.23 E-value=8.1 Score=42.87 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=31.4
Q ss_pred hccceeeecCCceeeeecCCCceE-EEeeecccCcc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKV-HLQLKERGGRK 873 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 873 (910)
.|.|--++|..+|+.|++..|.+| .|.+|.|||..
T Consensus 54 iy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~~~ 89 (368)
T 1oqy_A 54 IYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 89 (368)
T ss_dssp ESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSSSC
T ss_pred EECCeecCCcCCHHHcCCCCCCEEEEEEecCCCCCC
Confidence 478999999999999999999988 88889998865
No 99
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=44.82 E-value=10 Score=34.31 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=26.6
Q ss_pred hccceeeecCCceeeeec-CCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNI-TPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 867 (910)
.|.|--++|+.+|+.||+ ..|.+|.|.++
T Consensus 66 i~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 66 LLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 378999999999999999 99999999875
No 100
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=44.16 E-value=7.3 Score=38.02 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=21.3
Q ss_pred cceeeecCCceeeeecCCCceEEEeeec
Q psy10054 841 TGLFFKDSNSLAYYNITPGTKVHLQLKE 868 (910)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (910)
+|.+ |--|||++|++..|++|.|..|.
T Consensus 103 ~~~w-krLNTL~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 103 QGLW-RRLNTLQHYKVPDGATVALVPCL 129 (138)
T ss_dssp ETTE-EECCBHHHHTCCTTCEEEEEEC-
T ss_pred cCCc-eeecchhccCCCCCCEEEEEECC
Confidence 4554 44689999999999999998763
No 101
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=43.67 E-value=9.2 Score=34.61 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.9
Q ss_pred eecCCceeeeecCCCceEEEe
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQ 865 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~ 865 (910)
..|+.+|++||+..|.+|.|.
T Consensus 73 ~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 73 SDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp SGGGSCHHHHCCCSCCEEEEE
T ss_pred cCCcCCHHHCCCCCCCEEEEE
Confidence 488899999999999999874
No 102
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=42.34 E-value=11 Score=33.74 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=32.2
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
.|.|--|.++.|.+-|+|..|.+|.+.+.-|||.
T Consensus 49 ~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 49 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred EECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 5789999999999999999999999999999995
No 103
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=39.16 E-value=11 Score=34.80 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=29.2
Q ss_pred hhccceeeecCCceeeeecCCCceEEEeeecccC
Q psy10054 838 NQETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
=.|.|--|.++.|.+-|+|..|.+|.+.++-|||
T Consensus 73 F~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 73 FLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3689999999999999999999999999999998
No 104
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=35.67 E-value=10 Score=33.68 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.7
Q ss_pred hccceeeecCCceeeeec-CCCceEEEeee
Q psy10054 839 QETGLFFKDSNSLAYYNI-TPGTKVHLQLK 867 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 867 (910)
.|.|--++|+.+|+.||+ ..|++|+|.+.
T Consensus 48 i~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 48 LLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp EETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred EECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 478889999999999999 59999999764
No 105
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=35.53 E-value=14 Score=35.53 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.2
Q ss_pred eecCCceeeeecCCCceEEEee
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~ 866 (910)
.|--|||++|++..|++|.|.=
T Consensus 104 wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 104 ITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCCCBTGGGTCCTTCEEEEEE
T ss_pred eeEeccccccCCCCCCEEEEee
Confidence 4778999999999999998853
No 106
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.47 E-value=17 Score=33.61 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=28.8
Q ss_pred hccceeee-cCCceeeeecCCCceEEEeeecccC
Q psy10054 839 QETGLFFK-DSNSLAYYNITPGTKVHLQLKERGG 871 (910)
Q Consensus 839 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (910)
.|.|-=++ |+.||.-||+.+|.+|+|-++-||.
T Consensus 66 i~~Gk~L~dD~~tL~dygI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 66 TSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp ESSSCEECCSSSBHHHHTCCSSEEEEEEECSCSC
T ss_pred EeCCcCccCCcCCHHHcCCCCCCEEEEEehhccC
Confidence 37777676 7899999999999999999998886
No 107
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.41 E-value=10 Score=34.67 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=22.2
Q ss_pred eecCCceeeeecCCCceEEEeeec
Q psy10054 845 FKDSNSLAYYNITPGTKVHLQLKE 868 (910)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~ 868 (910)
++|..+|+-||+.+|.+|+|.|..
T Consensus 59 L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 59 VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred CCCcCCHHHcCCCCCCEEEEEecC
Confidence 689999999999999999998875
No 108
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.10 E-value=13 Score=34.23 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=32.4
Q ss_pred hhccceeeecCCceeeeecCCCceEEEeeecccCc
Q psy10054 838 NQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGR 872 (910)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (910)
=.|.|--|.+..|.+-|+|..|.+|.+.++-|||.
T Consensus 67 f~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 67 FRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp EESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred EEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35789999999999999999999999999999995
No 109
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=31.82 E-value=18 Score=39.35 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=25.6
Q ss_pred hccceeeecCCceeeeecCCCceEEEeeecc
Q psy10054 839 QETGLFFKDSNSLAYYNITPGTKVHLQLKER 869 (910)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (910)
.|.|--++|+.+|+.|++.+|.+|+|.++-|
T Consensus 277 i~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 277 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 3668789999999999999999999998765
No 110
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.76 E-value=16 Score=30.59 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=10.2
Q ss_pred eeecCCCCCccChhhHHHHh
Q psy10054 769 FLISPITGEKIPASKVQEHM 788 (910)
Q Consensus 769 ~~~~PitGe~Ip~~e~~eHm 788 (910)
...|+.||..+....|++|+
T Consensus 17 ~~~C~~C~~~~~~~~L~~H~ 36 (75)
T 2d9k_A 17 LAVCQHCDLELSILKLKEHE 36 (75)
T ss_dssp CEECSSSCCEECHHHHHHHH
T ss_pred ccCCcccChHhhHHHHHHHH
Confidence 44555555555555555553
No 111
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.33 E-value=32 Score=23.56 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=20.4
Q ss_pred CceeecCCCCCccCh--hhHHHHhHhh
Q psy10054 767 DEFLISPITGEKIPA--SKVQEHMRIG 791 (910)
Q Consensus 767 ~~~~~~PitGe~Ip~--~e~~eHmRi~ 791 (910)
.....|++||....- +.|..|||+-
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L~~H~~~H 33 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDLQRHIWAH 33 (37)
T ss_dssp CCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred CCCeECCCCChhhccCHHHHHHHHHhc
Confidence 446899999998766 6899999873
No 112
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=30.66 E-value=31 Score=31.95 Aligned_cols=23 Identities=13% Similarity=0.481 Sum_probs=21.3
Q ss_pred CCceeecCCCCCccChhhHHHHh
Q psy10054 766 TDEFLISPITGEKIPASKVQEHM 788 (910)
Q Consensus 766 ~~~~~~~PitGe~Ip~~e~~eHm 788 (910)
+..+..||.||-+|.++-+.-|+
T Consensus 67 ~s~~~~C~nC~R~vaa~RFApHL 89 (99)
T 3mhs_C 67 SSQYIHCENCGRDVSANRLAAHL 89 (99)
T ss_dssp TSCEEECTTTCCEEEGGGHHHHH
T ss_pred CCCeEECCCCCCCchhhhhHHHH
Confidence 46799999999999999999997
No 113
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.11 E-value=19 Score=31.19 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.0
Q ss_pred ccceeeec-CCceeeeecCCCceEEEeee
Q psy10054 840 ETGLFFKD-SNSLAYYNITPGTKVHLQLK 867 (910)
Q Consensus 840 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 867 (910)
|.|--++| ..+|+.|++.+|.+|+|..+
T Consensus 56 ~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 56 FKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp ETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred ECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 67888999 55899999999999999753
No 114
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.18 E-value=36 Score=21.42 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.0
Q ss_pred eecCCCCCcc-ChhhHHHHhHhh
Q psy10054 770 LISPITGEKI-PASKVQEHMRIG 791 (910)
Q Consensus 770 ~~~PitGe~I-p~~e~~eHmRi~ 791 (910)
..|++||... ....|..|||+-
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H 25 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHLRIH 25 (29)
T ss_dssp EECTTTSCEESCHHHHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHHHHh
Confidence 5799999875 467899999874
No 115
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=27.16 E-value=29 Score=32.18 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=24.8
Q ss_pred ccceeeecCCceeeeec-CCCceEEEeeec
Q psy10054 840 ETGLFFKDSNSLAYYNI-TPGTKVHLQLKE 868 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 868 (910)
+.|--.+|..||+-||+ .+|.+|+|.|-.
T Consensus 71 ~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 71 IGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp ETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred ccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 55667899999999999 599999998853
No 116
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.16 E-value=46 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=18.0
Q ss_pred eeecCCCCCccC-hhhHHHHhHh
Q psy10054 769 FLISPITGEKIP-ASKVQEHMRI 790 (910)
Q Consensus 769 ~~~~PitGe~Ip-~~e~~eHmRi 790 (910)
-..|++||.... .+.|..|||+
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHHHHH
Confidence 368999999865 5789999986
No 117
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.83 E-value=46 Score=22.42 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=20.1
Q ss_pred CceeecCCCCCccC-hhhHHHHhHhh
Q psy10054 767 DEFLISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 767 ~~~~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
.....|++||.... ...|..|||+-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKANLNVHLRKH 32 (36)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHc
Confidence 44689999999865 47799999874
No 118
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.69 E-value=45 Score=22.47 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.2
Q ss_pred CceeecCCCCCccC-hhhHHHHhHhh
Q psy10054 767 DEFLISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 767 ~~~~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
.....|++||.... ...|..|||+-
T Consensus 7 ~~~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32 (36)
T ss_dssp CSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred CCCeecCcCCCCcCchHHHHHHHHHh
Confidence 44678999999875 57899999874
No 119
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.59 E-value=47 Score=22.49 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=20.3
Q ss_pred CceeecCCCCCccC-hhhHHHHhHhh
Q psy10054 767 DEFLISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 767 ~~~~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
.....|++||.... ...|..|||+-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKSNLKAHMNRH 32 (36)
T ss_dssp CCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred CCCccCCCCCchhCCHHHHHHHHHHh
Confidence 45689999999874 57899999874
No 120
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.31 E-value=41 Score=20.99 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=17.4
Q ss_pred eecCCCCCccC-hhhHHHHhHhh
Q psy10054 770 LISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 770 ~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
..|++||.... .+.|..|||+-
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~~h 24 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQRVH 24 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred ccCCCCCCcCCCHHHHHHHHHHc
Confidence 36999998865 47899999874
No 121
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.16 E-value=45 Score=21.00 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=18.7
Q ss_pred eeecCCCCCccC-hhhHHHHhHhh
Q psy10054 769 FLISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 769 ~~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
...|++||.... ...|..|||+-
T Consensus 3 ~~~C~~C~~~f~~~~~l~~H~~~h 26 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMRHLETH 26 (30)
T ss_dssp CEECTTTCCEESCHHHHHHHHHTT
T ss_pred CccCCCCCcccCCHHHHHHHHHHh
Confidence 468999999865 57899999874
No 122
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.43 E-value=53 Score=21.98 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=20.2
Q ss_pred CceeecCCCCCcc-ChhhHHHHhHhh
Q psy10054 767 DEFLISPITGEKI-PASKVQEHMRIG 791 (910)
Q Consensus 767 ~~~~~~PitGe~I-p~~e~~eHmRi~ 791 (910)
.....|++||... ..+.|..|||+-
T Consensus 5 ~k~~~C~~C~k~f~~~~~l~~H~~~H 30 (35)
T 1srk_A 5 KRPFVCRICLSAFTTKANCARHLKVH 30 (35)
T ss_dssp CSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHHc
Confidence 3467899999986 468899999874
No 123
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.24 E-value=50 Score=22.35 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=20.1
Q ss_pred CceeecCCCCCccC-hhhHHHHhHhh
Q psy10054 767 DEFLISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 767 ~~~~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
.....|++||.... ...|..|||+-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred CCCEECCCCCceeCCHHHHHHHHHHh
Confidence 45689999999865 47899999874
No 124
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.63 E-value=22 Score=31.34 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.2
Q ss_pred ccceeeecCCceeeeecCCCceEEE
Q psy10054 840 ETGLFFKDSNSLAYYNITPGTKVHL 864 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (910)
+.|-.++|..||+-||+..|.+|++
T Consensus 61 ~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 61 PKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp TTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred CCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4588899999999999999999775
No 125
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.56 E-value=31 Score=31.22 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=10.7
Q ss_pred eeecCCCCCccCh
Q psy10054 769 FLISPITGEKIPA 781 (910)
Q Consensus 769 ~~~~PitGe~Ip~ 781 (910)
--.||+||+.|.-
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3479999999984
No 126
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.49 E-value=38 Score=24.44 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=18.6
Q ss_pred eeecCCCCCccChhhHHHHhH
Q psy10054 769 FLISPITGEKIPASKVQEHMR 789 (910)
Q Consensus 769 ~~~~PitGe~Ip~~e~~eHmR 789 (910)
-.-||+|-|..|+.-+.-|+-
T Consensus 6 ~vqcpvcqq~mpaahin~hld 26 (29)
T 3vhs_A 6 QVQCPVCQQMMPAAHINSHLD 26 (29)
T ss_dssp EEECTTTCCEEEGGGHHHHHH
T ss_pred eeeChHHHHhCcHHHHHHHHh
Confidence 467999999999999999963
No 127
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.39 E-value=48 Score=20.93 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=17.7
Q ss_pred eeecCCCCCccC-hhhHHHHhHh
Q psy10054 769 FLISPITGEKIP-ASKVQEHMRI 790 (910)
Q Consensus 769 ~~~~PitGe~Ip-~~e~~eHmRi 790 (910)
...|++||.... .+.|..|||+
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMETHYRV 25 (28)
T ss_dssp SEECSSSCCEESCHHHHHHHHTT
T ss_pred CccCCCCCcccCCHHHHHHHHHh
Confidence 367999998855 4789999986
No 128
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.32 E-value=50 Score=20.62 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=17.6
Q ss_pred eecCCCCCccC-hhhHHHHhHhh
Q psy10054 770 LISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 770 ~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
..|+.||.... ...|..|||+-
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCSSCCCCCCTTTHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHh
Confidence 46999998864 57899999874
No 129
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.72 E-value=50 Score=20.77 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=17.5
Q ss_pred eecCCCCCccC-hhhHHHHhHhh
Q psy10054 770 LISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 770 ~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
..|++||.... .+.|..|||+-
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHHHHHh
Confidence 57999998864 47899999874
No 130
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.14 E-value=76 Score=21.01 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=19.8
Q ss_pred CceeecCCCCCccC-hhhHHHHhHhh
Q psy10054 767 DEFLISPITGEKIP-ASKVQEHMRIG 791 (910)
Q Consensus 767 ~~~~~~PitGe~Ip-~~e~~eHmRi~ 791 (910)
..-..|++||.... .+.|..|||+-
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h 30 (35)
T 2elx_A 5 SSGYVCALCLKKFVSSIRLRSHIREV 30 (35)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred CCCeECCCCcchhCCHHHHHHHHHHH
Confidence 34578999999854 57899999874
No 131
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.85 E-value=28 Score=30.79 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.0
Q ss_pred ccceeeecCCceeeeecCCCceEEEee
Q psy10054 840 ETGLFFKDSNSLAYYNITPGTKVHLQL 866 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (910)
|.|-.+ |..+|+.|++.+|.+|+|..
T Consensus 61 ~~Gk~L-dd~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 61 YKGLVP-EDKTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp SSSBCC-SSSBHHHHCCCTTEEEEECC
T ss_pred ECCeeC-CcCcHHHCCCCCCCEEEEEe
Confidence 566666 45599999999999999964
Done!