Your job contains 1 sequence.
>psy10054
MAIDVEKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNP
KFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFV
PKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQH
SLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEA
RVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGEEDLE
EDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTT
SEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPS
QPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKIN
QETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASL
KQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQ
IHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVL
MQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKK
VEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIP
ASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQE
TGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLP
PWAPALQGPL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10054
(910 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038464 - symbol:CG16941 species:7227 "Drosophila ... 1036 5.8e-173 6
UNIPROTKB|F1NU16 - symbol:SF3A1 "Uncharacterized protein"... 1020 8.6e-152 4
RGD|1311477 - symbol:Sf3a1 "splicing factor 3a, subunit 1... 1018 4.7e-151 4
MGI|MGI:1914715 - symbol:Sf3a1 "splicing factor 3a, subun... 1017 6.0e-151 4
ZFIN|ZDB-GENE-030616-156 - symbol:sf3a1 "splicing factor ... 1018 1.6e-150 4
UNIPROTKB|A2VDN6 - symbol:SF3A1 "Splicing factor 3A subun... 1013 2.0e-150 4
UNIPROTKB|E2RDL8 - symbol:SF3A1 "Uncharacterized protein"... 1013 2.5e-150 4
UNIPROTKB|Q15459 - symbol:SF3A1 "Splicing factor 3A subun... 1012 2.5e-150 4
UNIPROTKB|F1RFD3 - symbol:SF3A1 "Splicing factor 3A subun... 1012 2.5e-150 4
UNIPROTKB|I3LQZ7 - symbol:I3LQZ7 "Uncharacterized protein... 1012 1.1e-147 4
UNIPROTKB|E9PAW1 - symbol:SF3A1 "Splicing factor 3A subun... 570 1.8e-137 5
WB|WBGene00004188 - symbol:prp-21 species:6239 "Caenorhab... 725 2.7e-103 3
UNIPROTKB|G5ECL3 - symbol:prp-21 "Protein PRP-21" species... 725 2.7e-103 3
TAIR|locus:2204528 - symbol:AT1G14650 species:3702 "Arabi... 566 5.5e-78 4
ASPGD|ASPL0000077595 - symbol:AN4760 species:162425 "Emer... 523 2.6e-61 2
POMBASE|SPAC22A12.09c - symbol:sap114 "splicing factor Sa... 511 6.9e-61 2
TAIR|locus:2204523 - symbol:AT1G14640 species:3702 "Arabi... 486 1.2e-54 2
UNIPROTKB|G4NLD4 - symbol:MGG_02946 "Pre-mRNA-splicing fa... 458 1.2e-52 2
DICTYBASE|DDB_G0272676 - symbol:sf3a1 "splicing factor 3A... 313 2.5e-44 4
CGD|CAL0003731 - symbol:orf19.4659 species:5476 "Candida ... 202 3.2e-24 3
TAIR|locus:2130195 - symbol:AT4G16200 species:3702 "Arabi... 138 4.2e-14 2
TAIR|locus:2144123 - symbol:AT5G06520 species:3702 "Arabi... 132 3.0e-13 2
SGD|S000003739 - symbol:PRP21 "Subunit of the SF3a splici... 131 7.3e-11 3
TAIR|locus:505006596 - symbol:AT5G12280 species:3702 "Ara... 126 1.6e-07 3
UNIPROTKB|F1NDX1 - symbol:CHERP "Uncharacterized protein"... 148 6.0e-07 2
MGI|MGI:106417 - symbol:Cherp "calcium homeostasis endopl... 142 6.0e-07 2
UNIPROTKB|H0YFR9 - symbol:SFSWAP "Splicing factor, suppre... 138 3.6e-06 1
RGD|1305279 - symbol:Cherp "calcium homeostasis endoplasm... 142 6.3e-06 3
UNIPROTKB|F5H5X1 - symbol:SFSWAP "Splicing factor, suppre... 138 6.5e-06 2
UNIPROTKB|F1NDZ9 - symbol:CHERP "Uncharacterized protein"... 148 7.1e-06 2
MGI|MGI:101760 - symbol:Sfswap "splicing factor, suppress... 141 9.9e-06 1
RGD|1305004 - symbol:Sfswap "splicing factor, suppressor ... 141 9.9e-06 1
UNIPROTKB|A4FV64 - symbol:SF4 "SF4 protein" species:9913 ... 117 9.9e-06 2
FB|FBgn0261872 - symbol:scaf6 species:7227 "Drosophila me... 150 1.3e-05 2
ZFIN|ZDB-GENE-040426-931 - symbol:sfswap "splicing factor... 140 1.3e-05 1
UNIPROTKB|F1P586 - symbol:F1P586 "Uncharacterized protein... 139 1.6e-05 1
UNIPROTKB|Q8IWX8 - symbol:CHERP "Calcium homeostasis endo... 141 2.0e-05 2
UNIPROTKB|J3QK89 - symbol:CHERP "Calcium homeostasis endo... 141 2.0e-05 2
UNIPROTKB|J9P4M7 - symbol:SFSWAP "Uncharacterized protein... 137 2.7e-05 1
UNIPROTKB|F1RFQ9 - symbol:SFSWAP "Uncharacterized protein... 137 2.7e-05 1
UNIPROTKB|Q12872 - symbol:SFSWAP "Splicing factor, suppre... 138 2.8e-05 2
UNIPROTKB|E1C0P9 - symbol:U2SURP "Uncharacterized protein... 137 2.8e-05 1
RGD|1307882 - symbol:U2surp "U2 snRNP-associated SURP dom... 137 2.8e-05 1
UNIPROTKB|E2QUE5 - symbol:SFSWAP "Uncharacterized protein... 137 2.8e-05 1
UNIPROTKB|E2R1V3 - symbol:U2SURP "Uncharacterized protein... 137 3.0e-05 1
UNIPROTKB|O15042 - symbol:U2SURP "U2 snRNP-associated SUR... 137 3.0e-05 1
UNIPROTKB|F1SKE6 - symbol:U2SURP "Uncharacterized protein... 137 3.0e-05 1
MGI|MGI:1915208 - symbol:U2surp "U2 snRNP-associated SURP... 137 3.0e-05 1
UNIPROTKB|E1BKB9 - symbol:SFSWAP "Uncharacterized protein... 135 4.4e-05 1
UNIPROTKB|F1S9W3 - symbol:CHERP "Uncharacterized protein"... 142 5.3e-05 3
UNIPROTKB|J9NZK1 - symbol:CHERP "Uncharacterized protein"... 142 5.5e-05 3
UNIPROTKB|E2RHU5 - symbol:CHERP "Uncharacterized protein"... 142 6.0e-05 3
UNIPROTKB|E2RCV3 - symbol:SUGP1 "Uncharacterized protein"... 113 8.5e-05 3
UNIPROTKB|A8E648 - symbol:CHERP "CHERP protein" species:9... 142 8.6e-05 3
UNIPROTKB|J9P8U4 - symbol:SUGP1 "Uncharacterized protein"... 113 8.6e-05 3
TAIR|locus:2194050 - symbol:AT1G18050 species:3702 "Arabi... 124 0.00010 1
ZFIN|ZDB-GENE-070912-400 - symbol:u2surp "U2 snRNP-associ... 137 0.00011 2
UNIPROTKB|E7ET15 - symbol:U2SURP "U2 snRNP-associated SUR... 131 0.00013 1
MGI|MGI:1917866 - symbol:Sugp1 "SURP and G patch domain c... 111 0.00018 2
UNIPROTKB|F1NAQ9 - symbol:SUGP1 "Uncharacterized protein"... 110 0.00027 2
UNIPROTKB|F1MHP1 - symbol:U2SURP "Uncharacterized protein... 137 0.00029 2
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 125 0.00035 1
UNIPROTKB|Q8IWZ8 - symbol:SUGP1 "SURP and G-patch domain-... 107 0.00038 3
RGD|1310496 - symbol:Sugp1 "SURP and G patch domain conta... 104 0.00050 2
UNIPROTKB|K7EM86 - symbol:SUGP1 "SURP and G-patch domain-... 98 0.00053 1
TAIR|locus:2161705 - symbol:AT5G55100 species:3702 "Arabi... 95 0.00071 3
ZFIN|ZDB-GENE-070410-141 - symbol:zgc:163098 "zgc:163098"... 123 0.00086 1
ZFIN|ZDB-GENE-040407-1 - symbol:cherp "calcium homeostasi... 134 0.00088 2
>FB|FBgn0038464 [details] [associations]
symbol:CG16941 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648 EMBL:AE014297
GO:GO:0007067 GO:GO:0007052 GO:GO:0003723 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:Q862M4 GO:GO:0005686 GO:GO:0000381 SUPFAM:SSF109905
InterPro:IPR019956 PRINTS:PR00348 eggNOG:NOG300902
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 OMA:GMPPAKQ EMBL:AY047530 RefSeq:NP_650583.1
UniGene:Dm.4173 SMR:Q9VEP9 IntAct:Q9VEP9 MINT:MINT-968540
STRING:Q9VEP9 EnsemblMetazoa:FBtr0083374 GeneID:42048
KEGG:dme:Dmel_CG16941 UCSC:CG16941-RA FlyBase:FBgn0038464
InParanoid:Q9VEP9 OrthoDB:EOG4P2NHB GenomeRNAi:42048 NextBio:826909
Uniprot:Q9VEP9
Length = 784
Score = 1036 (369.7 bits), Expect = 5.8e-173, Sum P(6) = 5.8e-173
Identities = 199/290 (68%), Positives = 234/290 (80%)
Query: 11 GKDE--TVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPG 68
G D+ ++S ++GIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNE+GNPKFNFL+ G
Sbjct: 14 GNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGG 73
Query: 69 DPYHAYYQHRVKDIREGKVK--EAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPPK 126
DPYHAYY+H+V + REG A A EQ FVPK+PP
Sbjct: 74 DPYHAYYRHKVNEFREGNDAGITALASMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPP 133
Query: 127 EFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
EFEFIADPPSISALDLDIVKLTAQFVARNGR FLT+LM +EQRN+QFDFLRPQHSLFQYF
Sbjct: 134 EFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYF 193
Query: 187 TKLLEQYTKILIPPKDMMFRLKDES----SSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
TKLLEQYTK+LIPPKD++ +L+ ES SSM +L++VKYRA++ R+QEAQR++EE ++
Sbjct: 194 TKLLEQYTKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKI 253
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERM 292
E++RVAYAQIDWHDFVVVETVDY P E GNFPPPT PDEVGARVLM+ER+
Sbjct: 254 ERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERL 303
Score = 434 (157.8 bits), Expect = 5.8e-173, Sum P(6) = 5.8e-173
Identities = 84/101 (83%), Positives = 91/101 (90%)
Query: 522 EDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHT 581
E +D+ G AIEASLKQLAERRTDIFGVGDEET IGKK+GEE+T+KDD+ TWDGHT
Sbjct: 456 EKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKKDDRVTWDGHT 515
Query: 582 SSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPK 622
SSVEAATRAARANITLE+QIHQIHKVKGLLPDEEKEKIGPK
Sbjct: 516 SSVEAATRAARANITLEEQIHQIHKVKGLLPDEEKEKIGPK 556
Score = 368 (134.6 bits), Expect = 4.7e-166, Sum P(6) = 4.7e-166
Identities = 73/98 (74%), Positives = 85/98 (86%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASKV EHMRIGLLDPRWVEQRDKH EKINQ+ V+A G AIEASLKQLAERRTDIF
Sbjct: 426 EKIPASKVSEHMRIGLLDPRWVEQRDKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIF 485
Query: 507 GVGDEETAIGKKIGEEDTRKDDKL-FPGQ--AIEASLK 541
GVGDEET IGKK+GEE+T+KDD++ + G ++EA+ +
Sbjct: 486 GVGDEETVIGKKLGEEETKKDDRVTWDGHTSSVEAATR 523
Score = 290 (107.1 bits), Expect = 2.9e-151, Sum P(4) = 2.9e-151
Identities = 58/74 (78%), Positives = 62/74 (83%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
DKVVVKK YDPK +P P PTDE+LISPITGEKIPASKV EHMRIGLLDPRWVEQRD
Sbjct: 394 DKVVVKK-YDPKATQPKQA-PMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQRD 451
Query: 803 KHLNEKINQETVYA 816
KH EKINQ+ V+A
Sbjct: 452 KHTVEKINQDNVFA 465
Score = 141 (54.7 bits), Expect = 5.8e-173, Sum P(6) = 5.8e-173
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+KI E G+FFKDSN++A+YN+ GT VHLQ+KERGGRKK
Sbjct: 746 QKIFYE-GMFFKDSNTMAFYNLVNGTTVHLQVKERGGRKK 784
Score = 98 (39.6 bits), Expect = 2.2e-117, Sum P(3) = 2.2e-117
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 820 LLDPRWVEQRDKHLNEKINQE 840
LLDPRWVEQRDKH EKINQ+
Sbjct: 441 LLDPRWVEQRDKHTVEKINQD 461
Score = 57 (25.1 bits), Expect = 2.9e-151, Sum P(4) = 2.9e-151
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 653 DEVGARVLMQERM 665
DEVGARVLM+ER+
Sbjct: 291 DEVGARVLMEERL 303
Score = 49 (22.3 bits), Expect = 5.8e-173, Sum P(6) = 5.8e-173
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 434 DKVVVKKGYDPK 445
DKVVVKK YDPK
Sbjct: 394 DKVVVKK-YDPK 404
Score = 44 (20.5 bits), Expect = 5.8e-173, Sum P(6) = 5.8e-173
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 379 KDNTQVQDM 387
+DNTQVQDM
Sbjct: 359 RDNTQVQDM 367
Score = 43 (20.2 bits), Expect = 8.5e-49, Sum P(3) = 8.5e-49
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 255 HDFVVVETVDYMPGEPGNFPPPT 277
HD VVV+ D +P P PT
Sbjct: 393 HDKVVVKKYDPKATQPKQAPMPT 415
Score = 42 (19.8 bits), Expect = 5.8e-173, Sum P(6) = 5.8e-173
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 316 DDDMQIGSDEEND 328
D +MQI SD+E D
Sbjct: 309 DTEMQIESDDEGD 321
>UNIPROTKB|F1NU16 [details] [associations]
symbol:SF3A1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005684 "U2-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000061 InterPro:IPR000626
Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128 SMART:SM00213
SMART:SM00648 GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0000398 GO:GO:0071013 SUPFAM:SSF109905 GO:GO:0005684
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
OMA:GMPPAKQ EMBL:AADN02050496 IPI:IPI00651567
Ensembl:ENSGALT00000012894 Uniprot:F1NU16
Length = 790
Score = 1020 (364.1 bits), Expect = 8.6e-152, Sum P(4) = 8.6e-152
Identities = 198/327 (60%), Positives = 243/327 (74%)
Query: 7 KPP---PGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
KPP P ++ ++ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFN
Sbjct: 21 KPPEEEPKEEAAPAKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFN 80
Query: 64 FLSPGDPYHAYYQHRVKDIREGKVKEAPA--PXXXXXXXXXXXXXXXXXXXVTTEQPFVP 121
FL+P DPYHAYY+H+V + +EGK +E A P ++ VP
Sbjct: 81 FLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQTAQQQLPQKVQAQVIQETVVP 140
Query: 122 KDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHS 181
K+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHS
Sbjct: 141 KEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHS 200
Query: 182 LFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEAR 241
LF YFTKL+EQYTKILIPPK ++ +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 201 LFNYFTKLVEQYTKILIPPKGLLIKLKKEAENPKEVLDQVYYRVEWAKFQERERKKEEEE 260
Query: 242 VEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGXXXXXX 301
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 261 KEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK------- 313
Query: 302 XXXXXXXYGQRRPEDDDMQIGSDEEND 328
+G+ E+ +M++ SDEE++
Sbjct: 314 -------FGES--EEVEMEVESDEEDE 331
Score = 1007 (359.5 bits), Expect = 2.0e-150, Sum P(4) = 2.0e-150
Identities = 196/335 (58%), Positives = 240/335 (71%)
Query: 10 PGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGD 69
P ++ ++ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL+P D
Sbjct: 27 PKEEAAPAKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPND 86
Query: 70 PYHAYYQHRVKDIREGKVKEAPA--PXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPPKE 127
PYHAYY+H+V + +EGK +E A P ++ VPK+PP E
Sbjct: 87 PYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQTAQQQLPQKVQAQVIQETVVPKEPPPE 146
Query: 128 FEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFT 187
FEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSLF YFT
Sbjct: 147 FEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFT 206
Query: 188 KLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRV 247
KL+EQYTKILIPPK ++ +LK E+ + +LD+V YR ++ ++QE +RK+EE EK+RV
Sbjct: 207 KLVEQYTKILIPPKGLLIKLKKEAENPKEVLDQVYYRVEWAKFQERERKKEEEEKEKERV 266
Query: 248 AYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDN-GXXXXXXXXXXX 306
AYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER + G
Sbjct: 267 AYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVES 326
Query: 307 XXYGQRRPEDD-------------DMQIGSDEEND 328
+++ + D DM GSD+E++
Sbjct: 327 DEEDEKQEKTDEPSTQLDQDTQVQDMDEGSDDEDE 361
Score = 313 (115.2 bits), Expect = 8.6e-152, Sum P(4) = 8.6e-152
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 445 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 502
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 503 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDSKEKIGPSK 546
Score = 310 (114.2 bits), Expect = 1.8e-151, Sum P(4) = 1.8e-151
Identities = 68/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 415 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 474
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 475 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 532
Query: 566 --EEDTRK 571
E+D+++
Sbjct: 533 VPEDDSKE 540
Score = 270 (100.1 bits), Expect = 1.2e-142, Sum P(3) = 1.2e-142
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 382 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 440
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 441 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 469
Score = 141 (54.7 bits), Expect = 8.6e-152, Sum P(4) = 8.6e-152
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+T G+ +HL LKERGGRKK
Sbjct: 752 QKLQYE-GIFIKDSNSLAYYNMTSGSLIHLALKERGGRKK 790
Score = 55 (24.4 bits), Expect = 8.6e-152, Sum P(4) = 8.6e-152
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 382 DQVIVRKDYDPKASKPLPPAPAPDEYL 408
Score = 47 (21.6 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQ-IDWHDFVVVETVDYMPGEPGNFPPPT 277
+EV+ + E Q K +E + D+ Q +D E+ P PPP
Sbjct: 318 EEVEMEVESDEEDEKQEKTDEPSTQLDQDTQVQDMDEGSDDEDESQKVPPPPETPMPPPL 377
Query: 278 --TPDEVGAR 285
TPD+V R
Sbjct: 378 PPTPDQVIVR 387
Score = 47 (21.6 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 299 EELGARILIQERYE 312
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 382 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 440
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 441 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 500
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 501 GHSGSMARTQQAAQANITLQE 521
Score = 41 (19.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 5 VEKPPPGKDETVSQ 18
V PPP +DE VS+
Sbjct: 667 VHPPPPMEDEPVSK 680
>RGD|1311477 [details] [associations]
symbol:Sf3a1 "splicing factor 3a, subunit 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005684 "U2-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 RGD:1311477 GO:GO:0003723
InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398 GO:GO:0071013
SUPFAM:SSF109905 GO:GO:0005684 EMBL:CH473963
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 CTD:10291 OMA:GMPPAKQ OrthoDB:EOG4N5VWN IPI:IPI00215030
RefSeq:NP_001100705.1 UniGene:Rn.114913 Ensembl:ENSRNOT00000008355
GeneID:305479 KEGG:rno:305479 UCSC:RGD:1311477 NextBio:654684
Uniprot:D3ZQM0
Length = 791
Score = 1018 (363.4 bits), Expect = 4.7e-151, Sum P(4) = 4.7e-151
Identities = 196/325 (60%), Positives = 235/325 (72%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 25 EEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 84
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTE---QPFVPK 122
+P DPYHAYY+H+V + +EGK +E A V + + VPK
Sbjct: 85 NPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPK 144
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSL 182
+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSL
Sbjct: 145 EPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSL 204
Query: 183 FQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
F YFTKL+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 205 FNYFTKLVEQYTKILIPPKGLFAKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEK 264
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDN-GXXXXXX 301
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER + G
Sbjct: 265 EKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVE 324
Query: 302 XXXXXXXYGQRRPEDDDMQIGSDEE 326
Q + E+ Q+ D +
Sbjct: 325 MEVESDEEDQEKTEETPSQLDQDTQ 349
Score = 314 (115.6 bits), Expect = 4.7e-151, Sum P(4) = 4.7e-151
Identities = 69/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 416 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 475
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 476 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 533
Query: 566 --EEDTRK 571
E+DT++
Sbjct: 534 VPEDDTKE 541
Score = 312 (114.9 bits), Expect = 7.6e-151, Sum P(4) = 7.6e-151
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 446 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 503
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 504 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSK 547
Score = 270 (100.1 bits), Expect = 8.1e-142, Sum P(3) = 8.1e-142
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 383 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 441
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 442 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 470
Score = 135 (52.6 bits), Expect = 4.7e-151, Sum P(4) = 4.7e-151
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 753 QKLQYE-GIFIKDSNSLAYYNMASGAVIHLALKERGGRKK 791
Score = 55 (24.4 bits), Expect = 4.7e-151, Sum P(4) = 4.7e-151
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 383 DQVIVRKDYDPKASKPLPPAPAPDEYL 409
Score = 47 (21.6 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 302 EELGARILIQERYE 315
Score = 47 (21.6 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 383 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 441
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 442 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 501
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 502 GHSGSMARTQQAAQANITLQE 522
Score = 43 (20.2 bits), Expect = 2.0e-35, Sum P(4) = 2.0e-35
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 231 QEAQRKQEEARVEKDRVAYAQ-IDW--HDFVVVETVDYMPGEPGNFPPPTTPDEVGAR 285
+E Q K EE + D+ Q +D D + V P P P P TPD+V R
Sbjct: 331 EEDQEKTEETPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVR 388
>MGI|MGI:1914715 [details] [associations]
symbol:Sf3a1 "splicing factor 3a, subunit 1" species:10090
"Mus musculus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005684 "U2-type spliceosomal complex"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240
Pfam:PF01805 PROSITE:PS50128 SMART:SM00213 SMART:SM00648
MGI:MGI:1914715 GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0000398 GO:GO:0071013 EMBL:AL807825 SUPFAM:SSF109905
GO:GO:0005684 eggNOG:NOG300902 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 KO:K12825 HOGENOM:HOG000238941
CTD:10291 HOVERGEN:HBG059993 OMA:GMPPAKQ OrthoDB:EOG4N5VWN
ChiTaRS:SF3A1 EMBL:AK028829 EMBL:AK029095 EMBL:AK030223
EMBL:BC010727 EMBL:BC029753 IPI:IPI00408796 RefSeq:NP_080451.4
UniGene:Mm.156914 PDB:1WE7 PDBsum:1WE7 ProteinModelPortal:Q8K4Z5
SMR:Q8K4Z5 IntAct:Q8K4Z5 STRING:Q8K4Z5 PhosphoSite:Q8K4Z5
PaxDb:Q8K4Z5 PRIDE:Q8K4Z5 Ensembl:ENSMUST00000002198 GeneID:67465
KEGG:mmu:67465 UCSC:uc007hup.2 InParanoid:Q8K4Z5
EvolutionaryTrace:Q8K4Z5 NextBio:324654 Bgee:Q8K4Z5
CleanEx:MM_SF3A1 Genevestigator:Q8K4Z5
GermOnline:ENSMUSG00000002129 Uniprot:Q8K4Z5
Length = 791
Score = 1017 (363.1 bits), Expect = 6.0e-151, Sum P(4) = 6.0e-151
Identities = 196/325 (60%), Positives = 235/325 (72%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 25 EEASSKEDPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 84
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTE---QPFVPK 122
+P DPYHAYY+H+V + +EGK +E A V + + VPK
Sbjct: 85 NPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPK 144
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSL 182
+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSL
Sbjct: 145 EPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSL 204
Query: 183 FQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
F YFTKL+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 205 FNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEK 264
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDN-GXXXXXX 301
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER + G
Sbjct: 265 EKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVE 324
Query: 302 XXXXXXXYGQRRPEDDDMQIGSDEE 326
Q + E+ Q+ D +
Sbjct: 325 MEVESDEEDQEKAEETPSQLDQDTQ 349
Score = 314 (115.6 bits), Expect = 6.0e-151, Sum P(4) = 6.0e-151
Identities = 69/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 416 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 475
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 476 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 533
Query: 566 --EEDTRK 571
E+DT++
Sbjct: 534 VPEDDTKE 541
Score = 312 (114.9 bits), Expect = 9.7e-151, Sum P(4) = 9.7e-151
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 446 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 503
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 504 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSK 547
Score = 270 (100.1 bits), Expect = 1.0e-141, Sum P(3) = 1.0e-141
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 383 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 441
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 442 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 470
Score = 135 (52.6 bits), Expect = 6.0e-151, Sum P(4) = 6.0e-151
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 753 QKLQYE-GIFIKDSNSLAYYNMASGAVIHLALKERGGRKK 791
Score = 55 (24.4 bits), Expect = 6.0e-151, Sum P(4) = 6.0e-151
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 383 DQVIVRKDYDPKASKPLPPAPAPDEYL 409
Score = 47 (21.6 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 302 EELGARILIQERYE 315
Score = 47 (21.6 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 383 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 441
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 442 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 501
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 502 GHSGSMARTQQAAQANITLQE 522
Score = 43 (20.2 bits), Expect = 2.0e-35, Sum P(4) = 2.0e-35
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 231 QEAQRKQEEARVEKDRVAYAQ-IDW--HDFVVVETVDYMPGEPGNFPPPTTPDEVGAR 285
+E Q K EE + D+ Q +D D + V P P P P TPD+V R
Sbjct: 331 EEDQEKAEETPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVR 388
>ZFIN|ZDB-GENE-030616-156 [details] [associations]
symbol:sf3a1 "splicing factor 3a, subunit 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648
ZFIN:ZDB-GENE-030616-156 GO:GO:0003723 GO:GO:0006396
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF109905 EMBL:AL591213
HSSP:Q15843 GeneTree:ENSGT00570000079144 InterPro:IPR022030
Pfam:PF12230 KO:K12825 HOGENOM:HOG000238941 CTD:10291
HOVERGEN:HBG059993 OMA:GMPPAKQ EMBL:FP074877 EMBL:BC056521
EMBL:BC066392 EMBL:BC171506 EMBL:BC171508 IPI:IPI00502874
RefSeq:NP_956388.1 UniGene:Dr.28440 SMR:Q90X41 STRING:Q90X41
Ensembl:ENSDART00000061378 Ensembl:ENSDART00000121416
Ensembl:ENSDART00000126687 GeneID:796388 KEGG:dre:796388
InParanoid:Q90X41 NextBio:20932585 Uniprot:Q90X41
Length = 780
Score = 1018 (363.4 bits), Expect = 1.6e-150, Sum P(4) = 1.6e-150
Identities = 191/288 (66%), Positives = 229/288 (79%)
Query: 7 KPPPGKDET-VSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
KP K+ET ++ +VGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 16 KPEEPKEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 75
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPP 125
+P DPYHAYY+H+V + +EGK +E P+ V E VPK+PP
Sbjct: 76 NPSDPYHAYYRHKVNEFKEGKAQE-PSAAVPKVMQHPQQLPQKVQAQVIHET-VVPKEPP 133
Query: 126 KEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQY 185
EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSLF Y
Sbjct: 134 PEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNY 193
Query: 186 FTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKD 245
FTKL+EQYTK+LIPPK ++ +LK E+ + +LD+V+YR ++ ++QE +RK+EE EK+
Sbjct: 194 FTKLVEQYTKVLIPPKGLLLKLKKEAENPREVLDQVRYRVEWAKFQERERKKEEEEREKE 253
Query: 246 RVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMD 293
RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 254 RVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYE 301
Score = 704 (252.9 bits), Expect = 1.5e-117, Sum P(4) = 1.5e-117
Identities = 133/209 (63%), Positives = 167/209 (79%)
Query: 120 VPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQ 179
VPK+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQ
Sbjct: 128 VPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQ 187
Query: 180 HSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEE 239
HSLF YFTKL+EQYTK+LIPPK ++ +LK E+ + +LD+V+YR ++ ++QE +RK+EE
Sbjct: 188 HSLFNYFTKLVEQYTKVLIPPKGLLLKLKKEAENPREVLDQVRYRVEWAKFQERERKKEE 247
Query: 240 ARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGXXXX 299
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 248 EEREKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK----- 302
Query: 300 XXXXXXXXXYGQRRPEDDDMQIGSDEEND 328
+G+ E+ +M++ S++E+D
Sbjct: 303 ---------FGES--EEVEMEVESEDEDD 320
Score = 311 (114.5 bits), Expect = 1.6e-150, Sum P(4) = 1.6e-150
Identities = 69/128 (53%), Positives = 88/128 (68%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + E+ +E VYAPG IE+SLKQLAERRTDIF
Sbjct: 405 EKIPASKMQEHMRIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIF 464
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 465 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 522
Query: 566 -EEDTRKD 572
+ED K+
Sbjct: 523 VQEDDSKE 530
Score = 295 (108.9 bits), Expect = 7.5e-149, Sum P(4) = 7.5e-149
Identities = 61/94 (64%), Positives = 75/94 (79%)
Query: 532 PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGHTSSVEAATRA 590
PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH+ S+ +A
Sbjct: 445 PGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQA 502
Query: 591 ARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
A+ANITL++QI IHK KGL+ D+ KEKIGP +
Sbjct: 503 AQANITLQEQIEAIHKAKGLVQEDDSKEKIGPSK 536
Score = 263 (97.6 bits), Expect = 9.5e-145, Sum P(4) = 9.5e-145
Identities = 56/96 (58%), Positives = 71/96 (73%)
Query: 743 DKVVVKKGYDPKQARP--PVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQ 800
D+V+++K YDPK ++P PV P DE+LISPITGEKIPASK+QEHMRIGLLDPRW+EQ
Sbjct: 372 DQVIIRKDYDPKASKPLAPVATP---DEYLISPITGEKIPASKMQEHMRIGLLDPRWLEQ 428
Query: 801 RDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
RD+ + E+ +E VYAP LD +E K L E+
Sbjct: 429 RDRSIRERQIEEEVYAPG--LD---IESSLKQLAER 459
Score = 134 (52.2 bits), Expect = 1.6e-150, Sum P(4) = 1.6e-150
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 742 QKLQYE-GIFIKDSNSLAYYNMNNGAVIHLALKERGGRKK 780
Score = 75 (31.5 bits), Expect = 5.2e-125, Sum P(4) = 5.2e-125
Identities = 33/102 (32%), Positives = 47/102 (46%)
Query: 747 VKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLN 806
+K P PP + P+P D+ +I K ASK L P V D++L
Sbjct: 353 MKAPLPPDNPLPPPLPPTP-DQVIIRKDYDPK--ASKP--------LAP--VATPDEYLI 399
Query: 807 EKINQETVYAPEF-------LLDPRWVEQRDKHLNEK-INQE 840
I E + A + LLDPRW+EQRD+ + E+ I +E
Sbjct: 400 SPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIRERQIEEE 441
Score = 54 (24.1 bits), Expect = 1.6e-150, Sum P(4) = 1.6e-150
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEK--IPASKVQEHM 458
D+V+++K YDPK K P + E++
Sbjct: 372 DQVIIRKDYDPKASKPLAPVATPDEYL 398
Score = 47 (21.6 bits), Expect = 9.5e-145, Sum P(4) = 9.5e-145
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 288 EELGARILIQERYE 301
Score = 43 (20.2 bits), Expect = 8.2e-118, Sum P(3) = 8.2e-118
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V++ DY P P TPDE G ++ MQE M G
Sbjct: 372 DQVIIRK-DYDPKASKPLAPVATPDEYLISPITGEKIPASKMQEHMRIGLLDPRWLEQRD 430
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+R+ E++ G D E+ ++I E+++Q
Sbjct: 431 RSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 490
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 491 GHSGSMARTQQAAQANITLQE 511
Score = 38 (18.4 bits), Expect = 7.5e-149, Sum P(4) = 7.5e-149
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 267 PGEPGN-FPPPT--TPDEV 282
P P N PPP TPD+V
Sbjct: 356 PLPPDNPLPPPLPPTPDQV 374
>UNIPROTKB|A2VDN6 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9913
"Bos taurus" [GO:0005684 "U2-type spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0003723 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0000398 GO:GO:0071013 SUPFAM:SSF109905
GO:GO:0005684 eggNOG:NOG300902 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 KO:K12825 HOGENOM:HOG000238941
EMBL:BC133328 IPI:IPI00687512 RefSeq:NP_001074979.1 UniGene:Bt.7260
ProteinModelPortal:A2VDN6 SMR:A2VDN6 STRING:A2VDN6 PRIDE:A2VDN6
Ensembl:ENSBTAT00000004398 GeneID:504381 KEGG:bta:504381 CTD:10291
HOVERGEN:HBG059993 InParanoid:A2VDN6 OMA:GMPPAKQ OrthoDB:EOG4N5VWN
NextBio:20866634 Uniprot:A2VDN6
Length = 793
Score = 1013 (361.7 bits), Expect = 2.0e-150, Sum P(4) = 2.0e-150
Identities = 198/326 (60%), Positives = 241/326 (73%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 25 EEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 84
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTE---QPFVPK 122
+P DPYHAYY+H+V + +EGK +E A V + + VPK
Sbjct: 85 NPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQASQQQLPQKVQAQVIQETIVPK 144
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSL 182
+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSL
Sbjct: 145 EPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSL 204
Query: 183 FQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
F YFTKL+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 205 FNYFTKLVEQYTKILIPPKGLFTKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEK 264
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGXXXXXXX 302
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 265 EKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK-------- 316
Query: 303 XXXXXXYGQRRPEDDDMQIGSDEEND 328
+G+ E+ +M++ SDEE++
Sbjct: 317 ------FGES--EEVEMEVESDEEDE 334
Score = 314 (115.6 bits), Expect = 2.0e-150, Sum P(4) = 2.0e-150
Identities = 69/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 418 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 477
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 478 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 535
Query: 566 --EEDTRK 571
E+DT++
Sbjct: 536 VPEDDTKE 543
Score = 312 (114.9 bits), Expect = 3.2e-150, Sum P(4) = 3.2e-150
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 448 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 505
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 506 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSK 549
Score = 270 (100.1 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 444 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 472
Score = 134 (52.2 bits), Expect = 2.0e-150, Sum P(4) = 2.0e-150
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 755 QKLQYE-GIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
Score = 55 (24.4 bits), Expect = 2.0e-150, Sum P(4) = 2.0e-150
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAPDEYL 411
Score = 47 (21.6 bits), Expect = 1.0e-35, Sum P(4) = 1.0e-35
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQ-IDW--HDFVVVETVDYMPGEPGNFPP 275
+EV+ + E Q K EE + D+ Q +D D + V P P P
Sbjct: 321 EEVEMEVESDEEDEKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPL 380
Query: 276 PTTPDEVGAR 285
P TPD+V R
Sbjct: 381 PPTPDQVIVR 390
Score = 47 (21.6 bits), Expect = 4.3e-29, Sum P(3) = 4.3e-29
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 302 EELGARILIQERYE 315
Score = 47 (21.6 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 385 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 444 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 503
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 504 GHSGSMARTQQAAQANITLQE 524
Score = 37 (18.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 VEKPPPGKDETVSQ 18
V PPP +DE S+
Sbjct: 670 VHPPPPMEDEPASK 683
>UNIPROTKB|E2RDL8 [details] [associations]
symbol:SF3A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005684 "U2-type spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0003723 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0000398 GO:GO:0071013 SUPFAM:SSF109905
GO:GO:0005684 GeneTree:ENSGT00570000079144 InterPro:IPR022030
Pfam:PF12230 KO:K12825 CTD:10291 OMA:GMPPAKQ EMBL:AAEX03014797
RefSeq:XP_534733.2 ProteinModelPortal:E2RDL8
Ensembl:ENSCAFT00000020076 GeneID:477538 KEGG:cfa:477538
NextBio:20852999 Uniprot:E2RDL8
Length = 793
Score = 1013 (361.7 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 198/326 (60%), Positives = 241/326 (73%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 25 EEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 84
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTE---QPFVPK 122
+P DPYHAYY+H+V + +EGK +E A V + + VPK
Sbjct: 85 NPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPK 144
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSL 182
+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSL
Sbjct: 145 EPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSL 204
Query: 183 FQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
F YFTKL+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 205 FNYFTKLVEQYTKILIPPKGLFTKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEK 264
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGXXXXXXX 302
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 265 EKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK-------- 316
Query: 303 XXXXXXYGQRRPEDDDMQIGSDEEND 328
+G+ E+ +M++ SDEE++
Sbjct: 317 ------FGES--EEVEMEVESDEEDE 334
Score = 314 (115.6 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 69/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 418 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 477
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 478 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 535
Query: 566 --EEDTRK 571
E+DT++
Sbjct: 536 VPEDDTKE 543
Score = 312 (114.9 bits), Expect = 4.1e-150, Sum P(4) = 4.1e-150
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 448 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 505
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 506 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSK 549
Score = 270 (100.1 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 444 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 472
Score = 133 (51.9 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 755 QKLQYE-GIFIKDSNSLAYYNMANGAIIHLALKERGGRKK 793
Score = 55 (24.4 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAPDEYL 411
Score = 47 (21.6 bits), Expect = 1.3e-35, Sum P(4) = 1.3e-35
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQ-IDW--HDFVVVETVDYMPGEPGNFPP 275
+EV+ + E Q K EE + D+ Q +D D + V P P P
Sbjct: 321 EEVEMEVESDEEDEKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPL 380
Query: 276 PTTPDEVGAR 285
P TPD+V R
Sbjct: 381 PPTPDQVIVR 390
Score = 47 (21.6 bits), Expect = 5.4e-29, Sum P(3) = 5.4e-29
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 302 EELGARILIQERYE 315
Score = 47 (21.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 385 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 444 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 503
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 504 GHSGSMARTQQAAQANITLQE 524
Score = 37 (18.1 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 VEKPPPGKDETVSQ 18
V PPP +DE S+
Sbjct: 670 VHPPPPMEDEPASK 683
>UNIPROTKB|Q15459 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9606
"Homo sapiens" [GO:0005684 "U2-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;IDA;TAS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IMP] [GO:0000389 "mRNA 3'-splice site
recognition" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0071013
SUPFAM:SSF109905 GO:GO:0005684 GO:GO:0000389 eggNOG:NOG300902
InterPro:IPR022030 Pfam:PF12230 EMBL:AC004997 KO:K12825
HOGENOM:HOG000238941 CTD:10291 HOVERGEN:HBG059993 OMA:GMPPAKQ
OrthoDB:EOG4N5VWN EMBL:X85237 EMBL:CR456575 EMBL:BC001976
EMBL:BC007684 IPI:IPI00017451 PIR:S60735 RefSeq:NP_001005409.1
RefSeq:NP_005868.1 UniGene:Hs.406277 UniGene:Hs.505597 PDB:1ZKH
PDB:2DT6 PDB:2DT7 PDBsum:1ZKH PDBsum:2DT6 PDBsum:2DT7
ProteinModelPortal:Q15459 SMR:Q15459 DIP:DIP-29164N IntAct:Q15459
MINT:MINT-144269 STRING:Q15459 PhosphoSite:Q15459 DMDM:2498882
PaxDb:Q15459 PeptideAtlas:Q15459 PRIDE:Q15459 DNASU:10291
Ensembl:ENST00000215793 GeneID:10291 KEGG:hsa:10291 UCSC:uc003ahl.3
GeneCards:GC22M030727 HGNC:HGNC:10765 HPA:HPA000690 HPA:HPA030083
MIM:605595 neXtProt:NX_Q15459 PharmGKB:PA35683 InParanoid:Q15459
PhylomeDB:Q15459 ChiTaRS:SF3A1 EvolutionaryTrace:Q15459
GenomeRNAi:10291 NextBio:39000 PMAP-CutDB:Q15459
ArrayExpress:Q15459 Bgee:Q15459 CleanEx:HS_SF3A1
Genevestigator:Q15459 GermOnline:ENSG00000099995 Uniprot:Q15459
Length = 793
Score = 1012 (361.3 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 198/326 (60%), Positives = 240/326 (73%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 25 EEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 84
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTE---QPFVPK 122
+P DPYHAYY+H+V + +EGK +E A V + + VPK
Sbjct: 85 NPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPK 144
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSL 182
+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSL
Sbjct: 145 EPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSL 204
Query: 183 FQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
F YFTKL+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 205 FNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEK 264
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGXXXXXXX 302
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 265 EKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK-------- 316
Query: 303 XXXXXXYGQRRPEDDDMQIGSDEEND 328
+G+ E+ +M++ SDEE+D
Sbjct: 317 ------FGES--EEVEMEVESDEEDD 334
Score = 314 (115.6 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 69/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 418 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 477
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 478 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 535
Query: 566 --EEDTRK 571
E+DT++
Sbjct: 536 VPEDDTKE 543
Score = 312 (114.9 bits), Expect = 4.1e-150, Sum P(4) = 4.1e-150
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 448 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 505
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 506 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSK 549
Score = 270 (100.1 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 444 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 472
Score = 134 (52.2 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 755 QKLQYE-GIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
Score = 55 (24.4 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAPDEYL 411
Score = 47 (21.6 bits), Expect = 4.3e-29, Sum P(3) = 4.3e-29
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 302 EELGARILIQERYE 315
Score = 47 (21.6 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 385 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 444 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 503
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 504 GHSGSMARTQQAAQANITLQE 524
Score = 44 (20.5 bits), Expect = 2.0e-35, Sum P(4) = 2.0e-35
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQ-IDW--HDFVVVETVDYMPGEPGNFPP 275
+EV+ + + Q K EE + D+ Q +D D + V P P P
Sbjct: 321 EEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPL 380
Query: 276 PTTPDEVGAR 285
P TPD+V R
Sbjct: 381 PPTPDQVIVR 390
Score = 37 (18.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 VEKPPPGKDETVSQ 18
V PPP +DE S+
Sbjct: 670 VHPPPPMEDEPTSK 683
>UNIPROTKB|F1RFD3 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9823
"Sus scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000626
Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128 SMART:SM00213
SMART:SM00648 GO:GO:0003723 GO:GO:0006396 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF109905 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 KO:K12825 CTD:10291 OMA:GMPPAKQ
EMBL:CT956025 EMBL:GACC01000073 RefSeq:XP_003483500.1
UniGene:Ssc.97139 Ensembl:ENSSSCT00000010959 GeneID:100154850
KEGG:ssc:100154850 Uniprot:F1RFD3
Length = 793
Score = 1012 (361.3 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 191/291 (65%), Positives = 226/291 (77%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 25 EEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 84
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTE---QPFVPK 122
+P DPYHAYY+H+V + +EGK +E A V + + VPK
Sbjct: 85 NPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPK 144
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSL 182
+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSL
Sbjct: 145 EPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSL 204
Query: 183 FQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
F YFTKL+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 205 FNYFTKLVEQYTKILIPPKGLFTKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEK 264
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMD 293
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 265 EKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYE 315
Score = 314 (115.6 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 69/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 418 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 477
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 478 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 535
Query: 566 --EEDTRK 571
E+DT++
Sbjct: 536 VPEDDTKE 543
Score = 312 (114.9 bits), Expect = 4.1e-150, Sum P(4) = 4.1e-150
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 448 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 505
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 506 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSK 549
Score = 270 (100.1 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 444 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 472
Score = 134 (52.2 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 755 QKLQYE-GIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
Score = 55 (24.4 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 385 DQVIVRKDYDPKASKPLPPAPAPDEYL 411
Score = 47 (21.6 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 302 EELGARILIQERYE 315
Score = 47 (21.6 bits), Expect = 1.3e-117, Sum P(3) = 1.3e-117
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 385 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 443
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 444 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 503
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 504 GHSGSMARTQQAAQANITLQE 524
Score = 43 (20.2 bits), Expect = 2.6e-35, Sum P(4) = 2.6e-35
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQ-IDW--HDFVVVETVDYMPGEPGNFPP 275
+EV+ + E Q K EE + D+ Q +D D + V P P P
Sbjct: 321 EEVEMEVESDDEDEKQDKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPL 380
Query: 276 PTTPDEVGAR 285
P TPD+V R
Sbjct: 381 PPTPDQVIVR 390
Score = 37 (18.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 VEKPPPGKDETVSQ 18
V PPP +DE S+
Sbjct: 670 VHPPPPMEDEPASK 683
>UNIPROTKB|I3LQZ7 [details] [associations]
symbol:I3LQZ7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000626
Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128 SMART:SM00213
SMART:SM00648 GO:GO:0003723 GO:GO:0006396 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF109905 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 Ensembl:ENSSSCT00000031961
OMA:TEADANI Uniprot:I3LQZ7
Length = 757
Score = 1012 (361.3 bits), Expect = 1.1e-147, Sum P(4) = 1.1e-147
Identities = 191/291 (65%), Positives = 226/291 (77%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 5 EEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 64
Query: 66 SPGDPYHAYYQHRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTE---QPFVPK 122
+P DPYHAYY+H+V + +EGK +E A V + + VPK
Sbjct: 65 NPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPK 124
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSL 182
+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSL
Sbjct: 125 EPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSL 184
Query: 183 FQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
F YFTKL+EQYTKILIPPK + +LK E+ + +LD+V YR ++ ++QE +RK+EE
Sbjct: 185 FNYFTKLVEQYTKILIPPKGLFTKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEK 244
Query: 243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMD 293
EK+RVAYAQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +
Sbjct: 245 EKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYE 295
Score = 307 (113.1 bits), Expect = 1.1e-147, Sum P(4) = 1.1e-147
Identities = 61/83 (73%), Positives = 72/83 (86%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 395 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 454
Query: 507 GVGDEETAIGKKIGEEDTRKDDK 529
GV EETAIGKKIGEE+ +K ++
Sbjct: 455 GV--EETAIGKKIGEEEIQKPEE 475
Score = 274 (101.5 bits), Expect = 4.1e-146, Sum P(4) = 4.1e-146
Identities = 58/104 (55%), Positives = 77/104 (74%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 425 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 482
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRS 624
+ S+ +AA+ANITL++QI IHK K P+E ++ P S
Sbjct: 483 SGSMARTQQAAQANITLQEQIEAIHKAKASKPNEIPQQPPPPSS 526
Score = 270 (100.1 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 362 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 420
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 421 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 449
Score = 134 (52.2 bits), Expect = 1.1e-147, Sum P(4) = 1.1e-147
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 719 QKLQYE-GIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 757
Score = 55 (24.4 bits), Expect = 4.1e-146, Sum P(4) = 4.1e-146
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 362 DQVIVRKDYDPKASKPLPPAPAPDEYL 388
Score = 47 (21.6 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 282 EELGARILIQERYE 295
Score = 47 (21.6 bits), Expect = 1.3e-117, Sum P(3) = 1.3e-117
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 362 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 420
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 421 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 480
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 481 GHSGSMARTQQAAQANITLQE 501
Score = 37 (18.1 bits), Expect = 1.1e-147, Sum P(4) = 1.1e-147
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 267 PGEPGNFPPPTTPDEVGAR 285
P P P P TPD+V R
Sbjct: 349 PETPMPPPLPPTPDQVIVR 367
Score = 37 (18.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 VEKPPPGKDETVSQ 18
V PPP +DE S+
Sbjct: 634 VHPPPPMEDEPASK 647
>UNIPROTKB|E9PAW1 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0005634 GO:GO:0003723
GO:GO:0006396 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF109905
InterPro:IPR022030 Pfam:PF12230 EMBL:AC004997 KO:K12825 CTD:10291
RefSeq:NP_001005409.1 UniGene:Hs.406277 UniGene:Hs.505597
DNASU:10291 GeneID:10291 KEGG:hsa:10291 HGNC:HGNC:10765
ChiTaRS:SF3A1 GenomeRNAi:10291 NextBio:39000 IPI:IPI00470590
ProteinModelPortal:E9PAW1 SMR:E9PAW1 PRIDE:E9PAW1
Ensembl:ENST00000439242 UCSC:uc021wnt.1 ArrayExpress:E9PAW1
Bgee:E9PAW1 Uniprot:E9PAW1
Length = 728
Score = 570 (205.7 bits), Expect = 1.8e-137, Sum P(5) = 1.8e-137
Identities = 111/180 (61%), Positives = 138/180 (76%)
Query: 149 AQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLK 208
AQFVARNGR FLT LMQKEQRNYQFDFLRPQHSLF YFTKL+EQYTKILIPPK + +LK
Sbjct: 106 AQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLK 165
Query: 209 DESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPG 268
E+ + +LD+V YR ++ ++QE +RK+EE EK+RVAYAQIDWHDFVVVETVD+ P
Sbjct: 166 KEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPN 225
Query: 269 EPGNFPPPTTPDEVGARVLMQERMDNGXXXXXXXXXXXXXYGQRRPEDDDMQIGSDEEND 328
E GNFPPPTTP+E+GAR+L+QER + +G+ E+ +M++ SDEE+D
Sbjct: 226 EQGNFPPPTTPEELGARILIQERYEK--------------FGES--EEVEMEVESDEEDD 269
Score = 328 (120.5 bits), Expect = 1.8e-137, Sum P(5) = 1.8e-137
Identities = 59/83 (71%), Positives = 70/83 (84%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL 65
E+ +D S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL
Sbjct: 25 EEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL 84
Query: 66 SPGDPYHAYYQHRVKDIREGKVK 88
+P DPYHAYY+H+V + +EGK +
Sbjct: 85 NPNDPYHAYYRHKVSEFKEGKAQ 107
Score = 314 (115.6 bits), Expect = 1.8e-137, Sum P(5) = 1.8e-137
Identities = 69/128 (53%), Positives = 89/128 (69%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG IE+SLKQLAERRTDIF
Sbjct: 353 EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIF 412
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIG- 565
GV EETAIGKKIGEE+ +K ++ S+ + + + ++ AI K G
Sbjct: 413 GV--EETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGL 470
Query: 566 --EEDTRK 571
E+DT++
Sbjct: 471 VPEDDTKE 478
Score = 312 (114.9 bits), Expect = 2.9e-137, Sum P(5) = 2.9e-137
Identities = 64/104 (61%), Positives = 83/104 (79%)
Query: 523 DTRKDDKLF-PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK-DDKATWDGH 580
+ + DD+++ PG IE+SLKQLAERRTDIFGV EETAIGKKIGEE+ +K ++K TWDGH
Sbjct: 383 EKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGH 440
Query: 581 TSSVEAATRAARANITLEDQIHQIHKVKGLLP-DEEKEKIGPKR 623
+ S+ +AA+ANITL++QI IHK KGL+P D+ KEKIGP +
Sbjct: 441 SGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSK 484
Score = 270 (100.1 bits), Expect = 6.0e-128, Sum P(4) = 6.0e-128
Identities = 55/94 (58%), Positives = 71/94 (75%)
Query: 743 DKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRD 802
D+V+V+K YDPK ++P P+P DE+L+SPITGEKIPASK+QEHMRIGLLDPRW+EQRD
Sbjct: 320 DQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 378
Query: 803 KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEK 836
+ + EK + + VYAP LD +E K L E+
Sbjct: 379 RSIREKQSDDEVYAPG--LD---IESSLKQLAER 407
Score = 134 (52.2 bits), Expect = 1.8e-137, Sum P(5) = 1.8e-137
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K+ E G+F KDSNSLAYYN+ G +HL LKERGGRKK
Sbjct: 690 QKLQYE-GIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 728
Score = 89 (36.4 bits), Expect = 3.4e-41, Sum P(5) = 3.4e-41
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLL 190
I PP + +IV TA FVARNG F + Q E N +F+FL P Y+ +
Sbjct: 43 IYPPPEVR----NIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKV 98
Query: 191 EQY 193
++
Sbjct: 99 SEF 101
Score = 77 (32.2 bits), Expect = 5.6e-40, Sum P(5) = 5.6e-40
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVK 80
+V + A FVARNG +F +++ Q E N +F+FL P Y+ V+
Sbjct: 97 KVSEFKEGKAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVE 148
Score = 55 (24.4 bits), Expect = 1.8e-137, Sum P(5) = 1.8e-137
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 434 DKVVVKKGYDPKQEKI--PASKVQEHM 458
D+V+V+K YDPK K PA E++
Sbjct: 320 DQVIVRKDYDPKASKPLPPAPAPDEYL 346
Score = 47 (21.6 bits), Expect = 5.4e-60, Sum P(4) = 5.4e-60
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 653 DEVGARVLMQERMD 666
+E+GAR+L+QER +
Sbjct: 237 EELGARILIQERYE 250
Score = 47 (21.6 bits), Expect = 5.8e-36, Sum P(3) = 5.8e-36
Identities = 29/141 (20%), Positives = 47/141 (33%)
Query: 256 DFVVVETVDYMPGEPGNFPPPTTPDE------VGARV---LMQERMDNGXXXXXXXXXXX 306
D V+V DY P PP PDE G ++ MQE M G
Sbjct: 320 DQVIVRK-DYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRD 378
Query: 307 XXYGQRRPEDDDMQIGSDEENDY-YXXXXXXXXXXXXXXXXQEEINEDDMQXXXXXXXXX 365
+++ +D+ G D E+ ++I E+++Q
Sbjct: 379 RSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWD 438
Query: 366 XXXXXXARKSKEAKDNTQVQD 386
AR + A+ N +Q+
Sbjct: 439 GHSGSMARTQQAAQANITLQE 459
Score = 44 (20.5 bits), Expect = 4.3e-66, Sum P(5) = 4.3e-66
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQ-IDW--HDFVVVETVDYMPGEPGNFPP 275
+EV+ + + Q K EE + D+ Q +D D + V P P P
Sbjct: 256 EEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPL 315
Query: 276 PTTPDEVGAR 285
P TPD+V R
Sbjct: 316 PPTPDQVIVR 325
Score = 37 (18.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 VEKPPPGKDETVSQ 18
V PPP +DE S+
Sbjct: 605 VHPPPPMEDEPTSK 618
>WB|WBGene00004188 [details] [associations]
symbol:prp-21 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of
an epithelium" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240
Pfam:PF01805 PROSITE:PS50128 SMART:SM00213 SMART:SM00648
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0016477
GO:GO:0008406 GO:GO:0016246 GO:GO:0003723 GO:GO:0042127
GO:GO:0006396 GO:GO:0040035 GO:GO:0007281 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0040002 GO:GO:0040020 SUPFAM:SSF109905
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 OMA:GMPPAKQ EMBL:FO081752 EMBL:U09415 PIR:S50096
RefSeq:NP_493746.1 UniGene:Cel.19742 SMR:G5ECL3 IntAct:G5ECL3
EnsemblMetazoa:W07E6.4 GeneID:173440 KEGG:cel:CELE_W07E6.4
CTD:173440 WormBase:W07E6.4 NextBio:879663 Uniprot:G5ECL3
Length = 655
Score = 725 (260.3 bits), Expect = 2.7e-103, Sum P(3) = 2.7e-103
Identities = 133/274 (48%), Positives = 188/274 (68%)
Query: 18 QAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQH 77
+A++G+IYPPP++R IVDKTA F A+NG +FE++IR+ E NPKFNFLS DPYHAYY+
Sbjct: 22 RAIIGLIYPPPDIRTIVDKTARFAAKNGVDFENKIREKEAKNPKFNFLSITDPYHAYYKK 81
Query: 78 RVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPPKEFEFIADPPSI 137
V D EG+V+ P + FVP PP +EF ADP +I
Sbjct: 82 MVYDFSEGRVEAPKVPQAVKEH--------------VKKAEFVPSAPPPAYEFSADPSTI 127
Query: 138 SALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKIL 197
+A DLD+++L A FVARNGR FLT LM +E RNYQFDFL+P H F YFTKL++QY K+L
Sbjct: 128 NAYDLDLIRLVALFVARNGRQFLTQLMTREARNYQFDFLKPAHCNFTYFTKLVDQYQKVL 187
Query: 198 IPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDF 257
+P +++ +L+D++++ +++++ YR + ++Q+ + +EEA EK+R AYA IDWHDF
Sbjct: 188 VPSTNVVAQLQDDATNKKRLIEDINYRVSWEKHQKGLKDREEAEAEKERQAYASIDWHDF 247
Query: 258 VVVETVDYMPGEPGNFPPPTTPDEVGARVLMQER 291
VVV+TVD+ PG+ PP TP +VGAR+L++ R
Sbjct: 248 VVVQTVDFQPGDTSQLPPLCTPKDVGARILLEAR 281
Score = 228 (85.3 bits), Expect = 2.7e-103, Sum P(3) = 2.7e-103
Identities = 49/109 (44%), Positives = 68/109 (62%)
Query: 517 KKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKD--DK 574
+ IGE T ++ L G I +L AERRTDIFGVG E+T IGKK+GEED + +K
Sbjct: 382 RHIGERST-EEPVLALGADISRNLGNFAERRTDIFGVGGEQTMIGKKLGEEDNSQQGQNK 440
Query: 575 ATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKR 623
WDG + + TRA + +TL+ QI++IH+ G + D KEKIG ++
Sbjct: 441 LIWDGTEETRDMITRAVQNKVTLDQQINEIHRQHGFVADPSKEKIGAQQ 489
Score = 210 (79.0 bits), Expect = 2.1e-101, Sum P(3) = 2.1e-101
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
E+IP+ K+ EH+R +D ++ E RD+H+ E+ +E V A G I +L AERRTDIF
Sbjct: 356 ERIPSDKLAEHVRYNTVDSQYKEDRDRHIGERSTEEPVLALGADISRNLGNFAERRTDIF 415
Query: 507 GVGDEETAIGKKIGEED 523
GVG E+T IGKK+GEED
Sbjct: 416 GVGGEQTMIGKKLGEED 432
Score = 159 (61.0 bits), Expect = 4.9e-96, Sum P(3) = 4.9e-96
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 744 KVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDK 803
K V+ + YDPK R KP + ++ISP+TGE+IP+ K+ EH+R +D ++ E RD+
Sbjct: 325 KDVIVRDYDPK--RNVTQKPKAVENWIISPLTGERIPSDKLAEHVRYNTVDSQYKEDRDR 382
Query: 804 HLNEKINQETVYA 816
H+ E+ +E V A
Sbjct: 383 HIGERSTEEPVLA 395
Score = 104 (41.7 bits), Expect = 2.7e-103, Sum P(3) = 2.7e-103
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
GLF KD+ S A+YN+ T ++LQ+KERGG+KK
Sbjct: 623 GLFVKDNMSSAFYNLADRTAIYLQVKERGGKKK 655
Score = 57 (25.1 bits), Expect = 2.5e-85, Sum P(3) = 2.5e-85
Identities = 32/115 (27%), Positives = 51/115 (44%)
Query: 435 KVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEAS 494
K V+ + YDPK+ K E+ I L + DK L E + TV Q E
Sbjct: 325 KDVIVRDYDPKRNVTQKPKAVENWIISPLTGERIPS-DK-LAEHVRYNTV--DSQYKEDR 380
Query: 495 LKQLAERRTD--IFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASL--KQLAE 545
+ + ER T+ + +G + I + +G R+ D +F G E ++ K+L E
Sbjct: 381 DRHIGERSTEEPVLALGAD---ISRNLGNFAERRTD-IF-GVGGEQTMIGKKLGE 430
Score = 47 (21.6 bits), Expect = 2.8e-84, Sum P(3) = 2.8e-84
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 821 LDPRWVEQRDKHLNEKINQE 840
+D ++ E RD+H+ E+ +E
Sbjct: 372 VDSQYKEDRDRHIGERSTEE 391
Score = 42 (19.8 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 443 DPKQEKIPASKVQEH 457
DP +EKI A +V H
Sbjct: 479 DPSKEKIGAQQVPRH 493
>UNIPROTKB|G5ECL3 [details] [associations]
symbol:prp-21 "Protein PRP-21" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0016477 GO:GO:0008406
GO:GO:0016246 GO:GO:0003723 GO:GO:0042127 GO:GO:0006396
GO:GO:0040035 GO:GO:0007281 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0040002 GO:GO:0040020 SUPFAM:SSF109905
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 OMA:GMPPAKQ EMBL:FO081752 EMBL:U09415 PIR:S50096
RefSeq:NP_493746.1 UniGene:Cel.19742 SMR:G5ECL3 IntAct:G5ECL3
EnsemblMetazoa:W07E6.4 GeneID:173440 KEGG:cel:CELE_W07E6.4
CTD:173440 WormBase:W07E6.4 NextBio:879663 Uniprot:G5ECL3
Length = 655
Score = 725 (260.3 bits), Expect = 2.7e-103, Sum P(3) = 2.7e-103
Identities = 133/274 (48%), Positives = 188/274 (68%)
Query: 18 QAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQH 77
+A++G+IYPPP++R IVDKTA F A+NG +FE++IR+ E NPKFNFLS DPYHAYY+
Sbjct: 22 RAIIGLIYPPPDIRTIVDKTARFAAKNGVDFENKIREKEAKNPKFNFLSITDPYHAYYKK 81
Query: 78 RVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPPKEFEFIADPPSI 137
V D EG+V+ P + FVP PP +EF ADP +I
Sbjct: 82 MVYDFSEGRVEAPKVPQAVKEH--------------VKKAEFVPSAPPPAYEFSADPSTI 127
Query: 138 SALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKIL 197
+A DLD+++L A FVARNGR FLT LM +E RNYQFDFL+P H F YFTKL++QY K+L
Sbjct: 128 NAYDLDLIRLVALFVARNGRQFLTQLMTREARNYQFDFLKPAHCNFTYFTKLVDQYQKVL 187
Query: 198 IPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDF 257
+P +++ +L+D++++ +++++ YR + ++Q+ + +EEA EK+R AYA IDWHDF
Sbjct: 188 VPSTNVVAQLQDDATNKKRLIEDINYRVSWEKHQKGLKDREEAEAEKERQAYASIDWHDF 247
Query: 258 VVVETVDYMPGEPGNFPPPTTPDEVGARVLMQER 291
VVV+TVD+ PG+ PP TP +VGAR+L++ R
Sbjct: 248 VVVQTVDFQPGDTSQLPPLCTPKDVGARILLEAR 281
Score = 228 (85.3 bits), Expect = 2.7e-103, Sum P(3) = 2.7e-103
Identities = 49/109 (44%), Positives = 68/109 (62%)
Query: 517 KKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKD--DK 574
+ IGE T ++ L G I +L AERRTDIFGVG E+T IGKK+GEED + +K
Sbjct: 382 RHIGERST-EEPVLALGADISRNLGNFAERRTDIFGVGGEQTMIGKKLGEEDNSQQGQNK 440
Query: 575 ATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKR 623
WDG + + TRA + +TL+ QI++IH+ G + D KEKIG ++
Sbjct: 441 LIWDGTEETRDMITRAVQNKVTLDQQINEIHRQHGFVADPSKEKIGAQQ 489
Score = 210 (79.0 bits), Expect = 2.1e-101, Sum P(3) = 2.1e-101
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
E+IP+ K+ EH+R +D ++ E RD+H+ E+ +E V A G I +L AERRTDIF
Sbjct: 356 ERIPSDKLAEHVRYNTVDSQYKEDRDRHIGERSTEEPVLALGADISRNLGNFAERRTDIF 415
Query: 507 GVGDEETAIGKKIGEED 523
GVG E+T IGKK+GEED
Sbjct: 416 GVGGEQTMIGKKLGEED 432
Score = 159 (61.0 bits), Expect = 4.9e-96, Sum P(3) = 4.9e-96
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 744 KVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDK 803
K V+ + YDPK R KP + ++ISP+TGE+IP+ K+ EH+R +D ++ E RD+
Sbjct: 325 KDVIVRDYDPK--RNVTQKPKAVENWIISPLTGERIPSDKLAEHVRYNTVDSQYKEDRDR 382
Query: 804 HLNEKINQETVYA 816
H+ E+ +E V A
Sbjct: 383 HIGERSTEEPVLA 395
Score = 104 (41.7 bits), Expect = 2.7e-103, Sum P(3) = 2.7e-103
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
GLF KD+ S A+YN+ T ++LQ+KERGG+KK
Sbjct: 623 GLFVKDNMSSAFYNLADRTAIYLQVKERGGKKK 655
Score = 57 (25.1 bits), Expect = 2.5e-85, Sum P(3) = 2.5e-85
Identities = 32/115 (27%), Positives = 51/115 (44%)
Query: 435 KVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEAS 494
K V+ + YDPK+ K E+ I L + DK L E + TV Q E
Sbjct: 325 KDVIVRDYDPKRNVTQKPKAVENWIISPLTGERIPS-DK-LAEHVRYNTV--DSQYKEDR 380
Query: 495 LKQLAERRTD--IFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASL--KQLAE 545
+ + ER T+ + +G + I + +G R+ D +F G E ++ K+L E
Sbjct: 381 DRHIGERSTEEPVLALGAD---ISRNLGNFAERRTD-IF-GVGGEQTMIGKKLGE 430
Score = 47 (21.6 bits), Expect = 2.8e-84, Sum P(3) = 2.8e-84
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 821 LDPRWVEQRDKHLNEKINQE 840
+D ++ E RD+H+ E+ +E
Sbjct: 372 VDSQYKEDRDRHIGERSTEE 391
Score = 42 (19.8 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 443 DPKQEKIPASKVQEH 457
DP +EKI A +V H
Sbjct: 479 DPSKEKIGAQQVPRH 493
>TAIR|locus:2204528 [details] [associations]
symbol:AT1G14650 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648 Prosite:PS00299
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 EMBL:AC010657
InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398 SUPFAM:SSF109905
GO:GO:0005684 eggNOG:NOG300902 InterPro:IPR022030 Pfam:PF12230
KO:K12825 EMBL:AY081293 EMBL:AK226440 IPI:IPI00538761 PIR:G86280
RefSeq:NP_001117289.1 RefSeq:NP_172917.1 UniGene:At.22146 PDB:1WE6
PDBsum:1WE6 ProteinModelPortal:Q8RXF1 SMR:Q8RXF1 STRING:Q8RXF1
PaxDb:Q8RXF1 PRIDE:Q8RXF1 EnsemblPlants:AT1G14650.1
EnsemblPlants:AT1G14650.2 GeneID:838027 KEGG:ath:AT1G14650
TAIR:At1g14650 HOGENOM:HOG000238941 InParanoid:Q8RXF1 OMA:ILHAPRI
PhylomeDB:Q8RXF1 ProtClustDB:CLSN2682969 EvolutionaryTrace:Q8RXF1
Genevestigator:Q8RXF1 GermOnline:AT1G14650 Uniprot:Q8RXF1
Length = 785
Score = 566 (204.3 bits), Expect = 5.5e-78, Sum P(4) = 5.5e-78
Identities = 117/285 (41%), Positives = 169/285 (59%)
Query: 9 PPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPG 68
PP T ++ + GII+PPP++R IV+KTA FV++NG EFE RI + N KFNFL
Sbjct: 48 PPAAVATHTRTI-GIIHPPPDIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSS 106
Query: 69 DPYHAYYQHRVKDIR-EGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQP-----F-VP 121
DPYHA+YQH++ + R + K QP F +P
Sbjct: 107 DPYHAFYQHKLTEYRAQNKDGAQGTDDSDGTTDPQLDTGAADESEAGDTQPDLQAQFRIP 166
Query: 122 KDP---PKEFEF-IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR 177
P P+ ++ + P I+ +LDI+KLTAQFVARNG+ FLT L +E N QF F++
Sbjct: 167 SKPLEAPEPEKYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLSNRENNNPQFHFMK 226
Query: 178 PQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQ 237
P HS+F +FT L++ Y+++L+PPKD+ +L+ ++ + +L+ +R ++ R QE Q+K+
Sbjct: 227 PTHSMFTFFTSLVDAYSEVLMPPKDLKEKLRKSAADLTTVLERCLHRLEWDRSQEQQKKK 286
Query: 238 EEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEV 282
EE E +RV A IDWHDFVVVE++D+ E PPP T DEV
Sbjct: 287 EEDEKELERVQMAMIDWHDFVVVESIDFADEEDEELPPPMTLDEV 331
Score = 140 (54.3 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
Identities = 36/90 (40%), Positives = 54/90 (60%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
E IP +++ EHMRI L+DP++ EQ+D+ + KI +ET A I ++ LA R DIF
Sbjct: 419 ELIPINEMSEHMRISLIDPKFKEQKDR-MFAKI-RETTLAQDDEIAKNIVGLARLRPDIF 476
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAI 536
G +EE + K E + +KD++ P Q I
Sbjct: 477 GTTEEEVSNAVK-AEIEKKKDEQ--PKQVI 503
Score = 127 (49.8 bits), Expect = 5.5e-78, Sum P(4) = 5.5e-78
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 746 VVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHL 805
+VK P+ P + PT + +ISPITGE IP +++ EHMRI L+DP++ EQ+D+ +
Sbjct: 391 IVKNWKRPEDRIP--TERDPT-KVVISPITGELIPINEMSEHMRISLIDPKFKEQKDR-M 446
Query: 806 NEKINQETV 814
KI + T+
Sbjct: 447 FAKIRETTL 455
Score = 94 (38.1 bits), Expect = 5.5e-78, Sum P(4) = 5.5e-78
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
+K++ + G F KD+ SLA+YN+ G + L L+ERGGRK+
Sbjct: 747 QKLSGKAG-FLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785
Score = 47 (21.6 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 809 INQETVYAPEFLLDPRWVEQRDKHLNEKINQET 841
IN+ + + L+DP++ EQ+D+ + KI + T
Sbjct: 423 INEMSEHMRISLIDPKFKEQKDR-MFAKIRETT 454
Score = 38 (18.4 bits), Expect = 5.5e-78, Sum P(4) = 5.5e-78
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 583 SVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKI 619
+++ R ++A+ ED+I + K + DEE+ K+
Sbjct: 327 TLDEVIRRSKASAMEEDEIVEPGKEVEMEMDEEEVKL 363
Score = 37 (18.1 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 261 ETVDYMPGEPGNFPPPTT--PDEVGARVL 287
E D + G+P +FP P P G ++
Sbjct: 527 EQGDGVYGDPNSFPGPAALPPPRPGVPIV 555
>ASPGD|ASPL0000077595 [details] [associations]
symbol:AN4760 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 EMBL:BN001303 EMBL:AACD01000080
SUPFAM:SSF109905 eggNOG:NOG300902 OrthoDB:EOG40S3R5
InterPro:IPR022030 Pfam:PF12230 HOGENOM:HOG000194133 KO:K12825
RefSeq:XP_662364.1 ProteinModelPortal:Q5B3X0 SMR:Q5B3X0
STRING:Q5B3X0 EnsemblFungi:CADANIAT00005666 GeneID:2872559
KEGG:ani:AN4760.2 OMA:FTEADDQ Uniprot:Q5B3X0
Length = 524
Score = 523 (189.2 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 112/269 (41%), Positives = 165/269 (61%)
Query: 35 DKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPX 94
D A +VARNG FE R+R+ E NPKF+FL+ DPY +YQ R+ +I++G+ + A
Sbjct: 29 DIRAGYVARNGAVFEDRVREKERSNPKFSFLNSNDPYAPFYQWRLNEIKQGRGTDVSA-- 86
Query: 95 XXXXXXXXXXXXXXXXXXVTTEQPFVPKDP--PKEFEFIADPPSISALDLDIVKLTAQFV 152
T P PK P P +F F A P I+A DL++V+LTA FV
Sbjct: 87 ------------GRPGEPTPTPAPEAPKGPAPPPDFHFSARMPIINAQDLEVVRLTALFV 134
Query: 153 ARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPP--------KDMM 204
A+ G+ F+T+L Q+E RN+QFDFLRPQHSL+Q+FT+L++QYT +L P K +
Sbjct: 135 AKRGKSFMTALSQREARNFQFDFLRPQHSLYQFFTRLVDQYTILLRPEGIDEATSQKKRI 194
Query: 205 FRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVD 264
L+ + +L+ K RA++++YQE Q++++E EK+R+ YAQIDWHDFVVVETV
Sbjct: 195 AELEQNVKNRFHVLERAKARAEWVKYQEQQKQKKEEEEEKERIEYAQIDWHDFVVVETVL 254
Query: 265 YMPGEPG-NFPPPTTPDEVGARVLMQERM 292
+ + + PPPT+ +++ + L Q+ M
Sbjct: 255 FTEADDQVDLPPPTSLNDLQSASLEQKAM 283
Score = 162 (62.1 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 22 GIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKD 81
G++ PP ++R A +VARNG FE R+R+ E NPKF+FL+ DPY +YQ R+ +
Sbjct: 22 GVVLPPKDIR------AGYVARNGAVFEDRVREKERSNPKFSFLNSNDPYAPFYQWRLNE 75
Query: 82 IREGKVKEAPA 92
I++G+ + A
Sbjct: 76 IKQGRGTDVSA 86
Score = 122 (48.0 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 446 QEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDI 505
+++IP +++Q+HMRI +LDPRW EQ+ K + T + +LK+LA +R+D+
Sbjct: 402 KQQIPEAELQQHMRIEMLDPRWREQQAK---AQARTATTNLSTADVVNNLKRLASQRSDV 458
Query: 506 FGVGDEETAIGKKIG-EEDTRKDDKLFPG 533
F + TA+ EE+ RK F G
Sbjct: 459 F----DSTAVQSAPNPEEEARKKRMAFEG 483
Score = 96 (38.9 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 747 VKKGYDPK-QARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDK 803
++ Y P+ QAR + + + P ++IP +++Q+HMRI +LDPRW EQ+ K
Sbjct: 376 IRSDYVPRAQAR----RQNAAGAMALCPNCKQQIPEAELQQHMRIEMLDPRWREQQAK 429
Score = 74 (31.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 33 IVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQ 76
+V TA FVA+ G F + + Q E N +F+FL P H+ YQ
Sbjct: 126 VVRLTALFVAKRGKSFMTALSQREARNFQFDFLRP---QHSLYQ 166
Score = 48 (22.0 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 539 SLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDG 579
+LK+LA +R+D+F + TA+ E+ + + ++G
Sbjct: 447 NLKRLASQRSDVF----DSTAVQSAPNPEEEARKKRMAFEG 483
Score = 46 (21.3 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 820 LLDPRWVEQRDK 831
+LDPRW EQ+ K
Sbjct: 418 MLDPRWREQQAK 429
>POMBASE|SPAC22A12.09c [details] [associations]
symbol:sap114 "splicing factor Sap114" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
PomBase:SPAC22A12.09c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005681 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292 HSSP:Q8CH02
SUPFAM:SSF109905 eggNOG:NOG300902 OrthoDB:EOG40S3R5
InterPro:IPR022030 Pfam:PF12230 PIR:T38149 RefSeq:NP_593239.1
ProteinModelPortal:O13900 SMR:O13900 IntAct:O13900 STRING:O13900
EnsemblFungi:SPAC22A12.09c.1 GeneID:2541437 KEGG:spo:SPAC22A12.09c
HOGENOM:HOG000194133 KO:K12825 OMA:YLEDPFP NextBio:20802539
Uniprot:O13900
Length = 481
Score = 511 (184.9 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 105/277 (37%), Positives = 158/277 (57%)
Query: 17 SQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQ 76
S G+I PPP +R I+DK+A++VARNGP FE +IRQNE N KF FL DPYH YYQ
Sbjct: 28 SSVPAGVILPPPAIREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYYQ 87
Query: 77 HRVKDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDP-PKEFEFIADPP 135
H++ + REGK+K ++P P P + F P
Sbjct: 88 HKLTEAREGKLKS---------HATGLSTQKTSTLARPIQKPIEATIPAPSPYLFSEPLP 138
Query: 136 SISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTK 195
SIS+LDLD+++LTA++ A G FL SL QKE N QFDFL+P ++L+ YF ++++QYT
Sbjct: 139 SISSLDLDVLRLTARYAAVRGSSFLVSLSQKEWNNTQFDFLKPNNALYPYFMRIVQQYTS 198
Query: 196 ILIPP-KDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDW 254
++ P L++ ++L +++ R + + E+Q+K+++ EK+++ YAQIDW
Sbjct: 199 LIREPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQIDW 258
Query: 255 HDFVVVETVDYMPG-EPGNFPPPTTPDEVGARVLMQE 290
+DFVVVE + + E PT ++ L Q+
Sbjct: 259 NDFVVVEVIQFTKSDEHAKLAKPTNLADLQTATLEQK 295
Score = 130 (50.8 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
E +PA++++EHMR+ LLDPRW EQR E+ + T+ + A++K+L +RTD+F
Sbjct: 391 ELVPATELEEHMRLKLLDPRWQEQRKV---EESRKSTLNLENVNVAANMKRLVSQRTDLF 447
Query: 507 GVGDEETAIGKKIGEEDTRK 526
V + G +I +E+ +
Sbjct: 448 DVQN-----GVEISQEEIER 462
Score = 129 (50.5 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 40/115 (34%), Positives = 57/115 (49%)
Query: 753 PKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEK--IN 810
PK +P P ISP +GE +PA++++EHMR+ LLDPRW EQR + K +N
Sbjct: 367 PKVQKPVPKAFQPKVPMEISPFSGELVPATELEEHMRLKLLDPRWQEQRKVEESRKSTLN 426
Query: 811 QETVYAPEFLLDPRWVEQR----DKHLNEKINQETGLFFKDSNSLAYYNITPGTK 861
E V + R V QR D +I+QE K + + + + TP K
Sbjct: 427 LENVNVAANM--KRLVSQRTDLFDVQNGVEISQEEIERRKRAATQSAWGATPTNK 479
Score = 58 (25.5 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 522 EDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKA 575
E++RK + A++K+L +RTD+F V + G +I +E+ + +A
Sbjct: 418 EESRKSTLNLENVNVAANMKRLVSQRTDLFDVQN-----GVEISQEEIERRKRA 466
Score = 49 (22.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 115 TEQPFVPKDPPKEFEF-IADPPSISA 139
T +P+ P PK+ EF ++ PPS+++
Sbjct: 314 TAEPWEPISAPKKQEFGVSLPPSLAS 339
Score = 45 (20.9 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 114 TTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLT 148
TT QP V K PK F+ P IS ++V T
Sbjct: 363 TTTQPKVQKPVPKAFQPKV-PMEISPFSGELVPAT 396
>TAIR|locus:2204523 [details] [associations]
symbol:AT1G14640 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
EMBL:CP002684 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
InterPro:IPR022030 Pfam:PF12230 KO:K12825 IPI:IPI00529258
RefSeq:NP_172916.1 UniGene:At.51611 ProteinModelPortal:F4HW92
SMR:F4HW92 PRIDE:F4HW92 EnsemblPlants:AT1G14640.1 GeneID:838026
KEGG:ath:AT1G14640 OMA:PIAVATH PhylomeDB:F4HW92 Uniprot:F4HW92
Length = 735
Score = 486 (176.1 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 94/266 (35%), Positives = 153/266 (57%)
Query: 21 VGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVK 80
+GIIYPPPE+R IV+ TA FV++NG F ++++ + N F+FL +PYH +Y+++V
Sbjct: 58 IGIIYPPPEIRKIVETTAQFVSQNGLAFGNKVKTEKANNANFSFLKSDNPYHGFYRYKVT 117
Query: 81 D----IREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPPKEFEFIADPPS 136
+ IR+G + + P+++ + P
Sbjct: 118 EYSCHIRDGAQGTDVDDTEDPKLDDESDAKPDLQAQFRAPRKILEAPEPEKYT-VRLPEG 176
Query: 137 ISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKI 196
I +LDI+K TAQFVARNG+ FL LM++E N QF F++P HS+F +FT L++ Y+++
Sbjct: 177 IMEAELDIIKHTAQFVARNGQSFLRELMRREVNNSQFQFMKPTHSMFTFFTSLVDAYSEV 236
Query: 197 LIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHD 256
L+PP+D+ +L+ + + +L+ R ++ R+QE ++ +EE EK+RV IDW D
Sbjct: 237 LMPPRDLKEKLRKSVADLTTVLERCLNRLEWDRFQEEEKNKEEDEKEKERVQMVMIDWKD 296
Query: 257 FVVVETVDYMPGEPGNFPPPTTPDEV 282
F VVE++D+ E + P P T +EV
Sbjct: 297 FAVVESIDFADEEDKDLPMPMTLEEV 322
Score = 135 (52.6 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
E IP +++ EHMRI L+DP++ EQ+D+ + KI +ET A I ++ LA R DIF
Sbjct: 409 ELIPITEMSEHMRISLIDPKFKEQKDR-MFAKI-RETTLAQDDEIAKNIVGLARLRPDIF 466
Query: 507 GVGDEETAIGKKIGEEDTRKDDKLFPGQAI 536
G +EE + K E +KD++ P Q I
Sbjct: 467 GTTEEEVSNAVKADIE--KKDEQ--PKQVI 492
Score = 111 (44.1 bits), Expect = 3.9e-52, Sum P(2) = 3.9e-52
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 766 TDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETV 814
+ + +IS ITGE IP +++ EHMRI L+DP++ EQ+D+ + KI + T+
Sbjct: 398 SSKVVISRITGELIPITEMSEHMRISLIDPKFKEQKDR-MFAKIRETTL 445
Score = 44 (20.5 bits), Expect = 4.3e-45, Sum P(2) = 4.3e-45
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 820 LLDPRWVEQRDKHLNEKINQET 841
L+DP++ EQ+D+ + KI + T
Sbjct: 424 LIDPKFKEQKDR-MFAKIRETT 444
Score = 40 (19.1 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 267 PGEPGNFPPPTTPDE 281
P PG PPP P+E
Sbjct: 650 PPPPGEAPPPL-PEE 663
>UNIPROTKB|G4NLD4 [details] [associations]
symbol:MGG_02946 "Pre-mRNA-splicing factor sap114"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000061 Pfam:PF01805
PROSITE:PS50128 SMART:SM00648 GO:GO:0003723 GO:GO:0006396
EMBL:CM001237 SUPFAM:SSF109905 InterPro:IPR022030 Pfam:PF12230
KO:K12825 RefSeq:XP_003720761.1 ProteinModelPortal:G4NLD4
EnsemblFungi:MGG_02946T0 GeneID:2682499 KEGG:mgr:MGG_02946
Uniprot:G4NLD4
Length = 536
Score = 458 (166.3 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 103/276 (37%), Positives = 154/276 (55%)
Query: 22 GIIYPPP-EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPGDPYHAYYQHRV 79
G+I PPP E+R +++KTA +VAR G E R+R+N GNPKF+F+ S D Y+ YY+ R
Sbjct: 34 GVIIPPPGEIREVIEKTAGYVARGGLGIEQRLRENHSGNPKFSFVTSQSDAYNPYYEWRK 93
Query: 80 KDIREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPPK--EFEFIADPPSI 137
+ + G+ EQ P+ PPK +FEF A P +
Sbjct: 94 AEYKAGR---------GTALAAGRADAAALAAAKLAEQNKEPQGPPKPPDFEFSARMPRM 144
Query: 138 SALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKIL 197
+ DL+I+++TA FVARNGR F T LMQ+E +N QF FL P H+ +F +++QY IL
Sbjct: 145 NQKDLEILRVTALFVARNGRQFQTQLMQRETKNPQFQFLIPNHTFHNFFQHMVDQYAIIL 204
Query: 198 IPP----------KDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRV 247
+ + +L+ IL+ K RA+Y +QE +R+++EA EK +
Sbjct: 205 KESGMGGDGSKAQEQRIEQLRRNVEDRFHILERAKQRAEYAVWQEQERQKQEAAEEKKKD 264
Query: 248 AYAQIDWHDFVVVETVDYMPGEPG-NFPPPTTPDEV 282
+A+IDW+DFVVVET+D+ + PPPTT +++
Sbjct: 265 DFARIDWNDFVVVETIDFTEADANITLPPPTTLNDI 300
Score = 113 (44.8 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 447 EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIF 506
++I S+ +EHMRI LLDPRW EQ+ K + T + +LK+LA +RTD+F
Sbjct: 420 QQILLSEWEEHMRIELLDPRWKEQKAK---AESRYATTNISTADVANNLKRLASQRTDVF 476
Query: 507 GVGDEETAIGKKIGEEDTRKDDK 529
D T G+ + EE+ + K
Sbjct: 477 ---DSVT--GQPLSEEEMARRKK 494
Score = 97 (39.2 bits), Expect = 5.6e-51, Sum P(2) = 5.6e-51
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 747 VKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDK 803
+K+ Y PK A P + + P ++I S+ +EHMRI LLDPRW EQ+ K
Sbjct: 393 IKENYVPKAAARG---PRTGGQTALCPRCNQQILLSEWEEHMRIELLDPRWKEQKAK 446
Score = 79 (32.9 bits), Expect = 4.3e-49, Sum P(2) = 4.3e-49
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 539 SLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKA---TWDGHTSSVEAATRAARANI 595
+LK+LA +RTD+F ++ G+ + EE+ + KA ++DG+ A A ++
Sbjct: 464 NLKRLASQRTDVF-----DSVTGQPLSEEEMARRKKAAINSYDGNPDGKSQAHIAHLQHV 518
Query: 596 TLEDQIHQIHKVKG 609
+E+QI I + G
Sbjct: 519 NVEEQIRAIQQKFG 532
Score = 50 (22.7 bits), Expect = 4.9e-46, Sum P(2) = 4.9e-46
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 820 LLDPRWVEQRDK 831
LLDPRW EQ+ K
Sbjct: 435 LLDPRWKEQKAK 446
>DICTYBASE|DDB_G0272676 [details] [associations]
symbol:sf3a1 "splicing factor 3A subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005684 "U2-type spliceosomal complex"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000389 "mRNA 3'-splice site recognition" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648 dictyBase:DDB_G0272676
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000008
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF109905 GO:GO:0005684
GO:GO:0000389 eggNOG:NOG300902 InterPro:IPR022030 Pfam:PF12230
KO:K12825 OMA:ILHAPRI RefSeq:XP_001134622.1 HSSP:Q15459
ProteinModelPortal:Q86A14 STRING:Q86A14 EnsemblProtists:DDB0233180
GeneID:8618597 KEGG:ddi:DDB_G0272676 ProtClustDB:CLSZ2847461
Uniprot:Q86A14
Length = 760
Score = 313 (115.2 bits), Expect = 2.5e-44, Sum P(4) = 2.5e-44
Identities = 69/223 (30%), Positives = 122/223 (54%)
Query: 116 EQPFVPKDPPKEFE--------FIADPPS-ISALDLDIVKLTAQFVARNGRGFLTSLMQK 166
E+P P PP + E +I D P ++ L+LD ++LTAQF+A+NG F L +
Sbjct: 146 EKPQPPPPPPPKKEPTQPDPLLYILDVPDFMTPLELDTIRLTAQFIAKNGDSFFMELASR 205
Query: 167 EQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDES-SSMAAILDEVKYRA 225
E +N QFDFL+P + L+++F L+E Y +I+ PP+ + +LK S+ IL+ R
Sbjct: 206 EVKNSQFDFLKPTNHLYEWFRALVESYAQIIYPPQGIKEQLKSNYFSNKQTILERAMNRC 265
Query: 226 DYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGAR 285
+Y + +E + +++E R ++++ A IDWHDFV+V+T+++ + + P P T D++
Sbjct: 266 EYNQLKEIEEQKKEEREDEEKTIIASIDWHDFVIVDTIEFNEDDLDDLPQPRTFDQL--- 322
Query: 286 VLMQERMDNGXXXXXXXXXXXXXYGQRRPEDDDMQIGSDEEND 328
+ + G GQ + DM++ D+E++
Sbjct: 323 -IAGDTPFGGSDFDNDGHGSNGKGGQDMEMEMDMEMEMDDEDN 364
Score = 142 (55.0 bits), Expect = 2.5e-44, Sum P(4) = 2.5e-44
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 23 IIYPPP-EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKD 81
II P E++ I+DKTA + A+ G FE++++Q E N KFNF+ GD Y+ YY++++ +
Sbjct: 5 IITPTEGELKTIIDKTAAYAAKLGESFENKVKQREGHNAKFNFMKEGDQYYPYYRNKIVE 64
Query: 82 IREGKVKEAPAPXXXXXXXXXXXXXXXXXXXVTTEQP 118
+ K++ A T P
Sbjct: 65 -NKAKIQADAAAAAAAANPKTPSTTTTTTTTTTATTP 100
Score = 101 (40.6 bits), Expect = 2.5e-44, Sum P(4) = 2.5e-44
Identities = 35/112 (31%), Positives = 50/112 (44%)
Query: 445 KQEKIPASKVQEHMRIGLLDPRWVEQRDKHL------NEKINQETVYAPGQAIEASLKQL 498
KQE IP ++QEHMRI L+ +QRD L N N I +L+
Sbjct: 422 KQE-IPLDEMQEHMRIELIQK---QQRDSRLGGGGSSNNNNNLTNTLTQDDDIARNLQSF 477
Query: 499 AERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDI 550
A +R DIFG ET KK E+ T+ ++ G + Q A++ +
Sbjct: 478 ASKRVDIFG----ETESSKKQDEQPTQAPKVIWDGHSGSIPRVQAAQQAAQL 525
Score = 95 (38.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 8 PPPGKDETVSQAVVGIIYPP----PEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PPP K+ T ++ I+ P P + + TA F+A+NG F + E+ N +F+
Sbjct: 154 PPPKKEPTQPDPLLYILDVPDFMTPLELDTIRLTAQFIAKNGDSFFMELASREVKNSQFD 213
Query: 64 FLSPGDPYHAYYQHRVK 80
FL P + + +++ V+
Sbjct: 214 FLKPTNHLYEWFRALVE 230
Score = 90 (36.7 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 536 IEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSS---VEAATRAAR 592
I +L+ A +R DIFG ET KK E+ T+ K WDGH+ S V+AA +AA+
Sbjct: 470 IARNLQSFASKRVDIFG----ETESSKKQDEQPTQAP-KVIWDGHSGSIPRVQAAQQAAQ 524
Score = 77 (32.2 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 144 IVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF-TKLLEQYTKI 196
I+ TA + A+ G F + Q+E N +F+F++ + Y+ K++E KI
Sbjct: 16 IIDKTAAYAAKLGESFENKVKQREGHNAKFNFMKEGDQYYPYYRNKIVENKAKI 69
Score = 76 (31.8 bits), Expect = 2.5e-44, Sum P(4) = 2.5e-44
Identities = 36/135 (26%), Positives = 63/135 (46%)
Query: 754 KQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLN---EKIN 810
+Q PP SP+ S I E+ P SK + + + + W++ +N E +
Sbjct: 633 QQQLPPQTNTSPSSS---SSIKVEE-PQSKKLKIDDVLIPESVWLQNNPNPVNLTVEMAD 688
Query: 811 QETVYAPEFLLDPR----WVEQRDKHLN------EKINQETGL-FFKDSNSLAYYNITPG 859
+ +Y + L P ++++ K LN +K+ Q GL KD+ S+A+YN+
Sbjct: 689 KSNIY--QITLQPTDSISLLKEKIKELNGMPTNKQKL-QAPGLSILKDTCSIAFYNLKSL 745
Query: 860 TKVHLQLKERGGRKK 874
V K++GG+KK
Sbjct: 746 AIVTCGQKKKGGKKK 760
Score = 67 (28.6 bits), Expect = 5.2e-37, Sum P(3) = 5.2e-37
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 744 KVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDK 803
K+ + K Y +++ V +PT + ++IP ++QEHMRI L+ +QRD
Sbjct: 392 KLKIVKDY--QKSNSSVKSNAPTKLTQLCQFCKQEIPLDEMQEHMRIELIQK---QQRDS 446
Query: 804 HL 805
L
Sbjct: 447 RL 448
>CGD|CAL0003731 [details] [associations]
symbol:orf19.4659 species:5476 "Candida albicans" [GO:0003723
"RNA binding" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 CGD:CAL0003731 GO:GO:0003723 GO:GO:0006396
EMBL:AACQ01000005 EMBL:AACQ01000006 SUPFAM:SSF109905
eggNOG:NOG300902 InterPro:IPR022030 Pfam:PF12230 KO:K12825
RefSeq:XP_722730.1 RefSeq:XP_722876.1 ProteinModelPortal:Q5AMI7
GeneID:3635475 GeneID:3635700 KEGG:cal:CaO19.12129
KEGG:cal:CaO19.4659 Uniprot:Q5AMI7
Length = 425
Score = 202 (76.2 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 54/167 (32%), Positives = 85/167 (50%)
Query: 116 EQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQR---NYQ 172
E+ + PP + F+ D P IS DLD++K+TA ++A+NG + L+Q E + Q
Sbjct: 83 EEDIIIAKPP-DLPFLIDLPIISQHDLDVIKITALYIAQNGESKIPKLLQHETKLNNRAQ 141
Query: 173 FDFLRPQHSLFQYFTKLLEQYTKILIP----------PKDMMF----RLKDESSSMAAIL 218
F+FL HSL F K ++QY KI+I +D + +L + IL
Sbjct: 142 FEFLNESHSLHDLFQKYIQQY-KIVIELYQNSHGENVDQDQEYLQLRQLIKKPRGEYDIL 200
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDY 265
+ RA YI+ + K+E+ + ++ YA IDW DF +V VD+
Sbjct: 201 TQAYNRAQYIKQNKVIAKREQEESKARQLHYASIDWQDFSIVAKVDF 247
Score = 121 (47.7 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
PP +V+ +DKT +V +NG FE R+ +N N KF F+ P + Y YY+ ++
Sbjct: 11 PPSDVKQTIDKTVGYVIKNGKSFEERLLKNN-KNDKFTFIKPDNEYFPYYKWKL 63
Score = 71 (30.1 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 773 PITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKH 832
PITG+ IP ++ H++ L DPR+ ++++ ++ + + YA D + E +
Sbjct: 353 PITGKLIPENEFDTHIKTLLRDPRYKKEQENYIRKNFS----YASNITTDQVY-ENIKRF 407
Query: 833 LNEKINQE 840
+ ++ N E
Sbjct: 408 VKKRANVE 415
Score = 62 (26.9 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 11/57 (19%), Positives = 32/57 (56%)
Query: 449 IPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDI 505
IP ++ H++ L DPR+ ++++ ++ + + + Q E ++K+ ++R ++
Sbjct: 359 IPENEFDTHIKTLLRDPRYKKEQENYIRKNFSYASNITTDQVYE-NIKRFVKKRANV 414
Score = 45 (20.9 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 11/65 (16%), Positives = 29/65 (44%)
Query: 810 NQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKER 869
N+ + L DPR+ ++++ ++ + + + + + Y NI K +++
Sbjct: 362 NEFDTHIKTLLRDPRYKKEQENYIRKNFSYASNI----TTDQVYENIKRFVKKRANVEDE 417
Query: 870 GGRKK 874
+KK
Sbjct: 418 NPKKK 422
>TAIR|locus:2130195 [details] [associations]
symbol:AT4G16200 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723 GO:GO:0006396
EMBL:Z97340 EMBL:AL161543 SUPFAM:SSF109905 KO:K12825
IPI:IPI00521005 PIR:E71428 RefSeq:NP_193355.1 UniGene:At.50346
ProteinModelPortal:O23467 SMR:O23467 PRIDE:O23467
EnsemblPlants:AT4G16200.1 GeneID:827313 KEGG:ath:AT4G16200
TAIR:At4g16200 eggNOG:NOG282945 InParanoid:O23467 OMA:HDERINF
PhylomeDB:O23467 Genevestigator:O23467 Uniprot:O23467
Length = 288
Score = 138 (53.6 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 17 SQAVVGIIYPPPEV--RNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPGDPYHA 73
S+ + II PP ++ R +VDK A FV++ G EFE++I + + KFNFL S DP H
Sbjct: 8 SEQSMEIITPPADIGTRTLVDKAAQFVSKKGLEFETKIIDSYPTDAKFNFLRSTADPCHT 67
Query: 74 YYQHRVKD 81
YY+H++ +
Sbjct: 68 YYKHKLAE 75
Score = 117 (46.2 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 141 DLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPP 200
+LD VK+TAQFVA G F LM++ QF+F++ F ++ + + Y+++L PP
Sbjct: 200 ELDTVKVTAQFVAWYGDDFRGFLMERVMTEPQFEFMKATDYRFSFYNEFVVAYSQVLNPP 259
Query: 201 KDMMFRLKDESS 212
K + +L+ ++
Sbjct: 260 KYLKDKLRGRAA 271
Score = 103 (41.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 12 KDETVSQAVVGIIYPPPEVRN--IVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPG 68
+D ++ + I + PP V IV+ T+ V++ G EFE ++ + + +FNFL S
Sbjct: 81 QDGATDESDIKIFHAPPNVTTTAIVETTSCLVSQFGSEFEMMVKDSNTDDARFNFLKSSE 140
Query: 69 DPYHAYYQHRVKD 81
DPY+ Y+ ++ +
Sbjct: 141 DPYNVLYKQKLDE 153
Score = 55 (24.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 179 QHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRY 230
QH L + +K + T L+ P + FRL E + LD VK A ++ +
Sbjct: 164 QHKLAESISKYHREATPKLVLPNLLQFRLVKEMTFEE--LDTVKVTAQFVAW 213
Score = 52 (23.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 134 PPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKL-LEQ 192
PP+++ IV+ T+ V++ G F + + +F+FL+ + K L++
Sbjct: 96 PPNVTTTA--IVETTSCLVSQFGSEFEMMVKDSNTDDARFNFLKSSEDPYNVLYKQKLDE 153
Query: 193 YTKILIPPKDMMFRLK 208
Y+ + P+D ++ K
Sbjct: 154 YS---LDPRDAYYQHK 166
Score = 45 (20.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 69 DPYHAYYQHRVKD 81
DP AYYQH++ +
Sbjct: 157 DPRDAYYQHKLAE 169
>TAIR|locus:2144123 [details] [associations]
symbol:AT5G06520 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AP002543 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 KO:K12825 IPI:IPI00516593
RefSeq:NP_196270.1 UniGene:At.54748 ProteinModelPortal:Q9FG18
SMR:Q9FG18 PRIDE:Q9FG18 EnsemblPlants:AT5G06520.1 GeneID:830540
KEGG:ath:AT5G06520 TAIR:At5g06520 HOGENOM:HOG000152450 OMA:FVAVYGK
PhylomeDB:Q9FG18 ProtClustDB:CLSN2916517 Genevestigator:Q9FG18
Uniprot:Q9FG18
Length = 679
Score = 132 (51.5 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 19 AVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
A V I PPPE+R+ V+ TA V++NG E E ++ + + + + F+ DPYHA+YQ +
Sbjct: 390 ASVAPIEPPPEIRSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWSTDPYHAFYQLK 449
Query: 79 VKDIR 83
+ + R
Sbjct: 450 LAEYR 454
Score = 128 (50.1 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 49/172 (28%), Positives = 80/172 (46%)
Query: 117 QPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFL 176
QP V + FEF I+ +L I+KLTAQF+AR G F+ L ++ N QF FL
Sbjct: 465 QPNVLRSFGFGFEF--PEKEITLKELGIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFL 522
Query: 177 RP-QHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQR 235
+S F ++ L+ Y+++L+P K M D+ + A ++D ++ + ++
Sbjct: 523 ESTNNSRFSFYNGLVIAYSRVLMPSK--MLSKSDDCT--ATVVD------GFLSCLQLEK 572
Query: 236 KQEEARVEKDRVAYAQIDWHD-FVVVETVDYMPGEPG------NFPPPTTPD 280
++E ++ ID D F +E DY P PP TP+
Sbjct: 573 REEGVDID-------MIDLLDCFARLEDADYSANVPQPQHLSTQMQPPHTPE 617
Score = 120 (47.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 30/104 (28%), Positives = 55/104 (52%)
Query: 125 PKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQ 184
P +F F+ + + +LD +KLTAQFVA G F T LM++ + +FDF + S
Sbjct: 202 PVKFAFLTRGVTFTRNELDTIKLTAQFVAVYGTLFRTELMKRVFISPKFDFFKSTDSKCS 261
Query: 185 YFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYI 228
++ +L++ Y+++L + L + +LD+V + D +
Sbjct: 262 FYLRLVDGYSRVLRRSRKNGAGLGEVVVGFLKLLDQVVEKKDAV 305
Score = 78 (32.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 17 SQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYY 75
S +GI + E+ ++ TA FVA G F+ + + +P F FL P D +++Y
Sbjct: 77 SHLPLGITFTRKELE-LIKLTAQFVAVYGKYFQRELTTRVVESPLFEFLKPTDSRNSFY 134
Score = 66 (28.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 1 MAI-DVEKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGN 59
M+I D+ P P K +++ G+ + E+ + + TA FVA G F + + + +
Sbjct: 192 MSINDLRAPAPVKFAFLTR---GVTFTRNEL-DTIKLTAQFVAVYGTLFRTELMKRVFIS 247
Query: 60 PKFNFLSPGDPYHAYY 75
PKF+F D ++Y
Sbjct: 248 PKFDFFKSTDSKCSFY 263
Score = 41 (19.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 879 DFSQGLPNPLACLRALYRPLLPPWAPALQGPL 910
D+S +P P + P P +P L PL
Sbjct: 595 DYSANVPQPQHLSTQMQPPHTPETSPPLPLPL 626
>SGD|S000003739 [details] [associations]
symbol:PRP21 "Subunit of the SF3a splicing factor complex"
species:4932 "Saccharomyces cerevisiae" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005686 "U2 snRNP" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
SGD:S000003739 EMBL:BK006943 GO:GO:0003723 EMBL:X77688
GO:GO:0000398 GO:GO:0005686 SUPFAM:SSF109905 GO:GO:0071004
EMBL:L07744 PDB:4DGW PDBsum:4DGW EMBL:X67564 EMBL:Z49478
EMBL:AY558079 PIR:S23553 RefSeq:NP_012332.1
ProteinModelPortal:P32524 SMR:P32524 DIP:DIP-33054N DIP:DIP-689N
IntAct:P32524 MINT:MINT-383990 STRING:P32524 PaxDb:P32524
PRIDE:P32524 EnsemblFungi:YJL203W GeneID:853227 KEGG:sce:YJL203W
CYGD:YJL203w eggNOG:NOG300902 GeneTree:ENSGT00570000079144
OMA:RIRFSAY OrthoDB:EOG40S3R5 NextBio:973437 Genevestigator:P32524
GermOnline:YJL203W InterPro:IPR022030 Pfam:PF12230 Uniprot:P32524
Length = 280
Score = 131 (51.2 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 33/136 (24%), Positives = 66/136 (48%)
Query: 125 PKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQ 184
P +F F IS D++++KLTA++ A++ + + ++ K+ + +F+ H L +
Sbjct: 76 PPDFLFSQYDTGISRRDMEVIKLTARYYAKD-KSIVEQMISKDGEA-RLNFMNSSHPLHK 133
Query: 185 YFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEK 244
FT + QY ++ F ++ S ILD R Y +++ + ++ + VE
Sbjct: 134 TFTDFVAQYKRVY------SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVEL 187
Query: 245 DRVAYAQIDWHDFVVV 260
++ +A I W F V
Sbjct: 188 CKIQFAAIPWDKFTQV 203
Score = 85 (35.0 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYY 75
+++ + T N++ ++G EFE+++ ++E +F+F+ DP H YY
Sbjct: 7 QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYY 49
Score = 45 (20.9 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 572 DDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKR 623
+D ++G + R + I L D I ++ + ++ D+ K+K G +
Sbjct: 210 EDTEIFEGSLDLEQMRLRRVQTGIKLFDSIKPTNEEEKIVSDQGKQKGGDSK 261
>TAIR|locus:505006596 [details] [associations]
symbol:AT5G12280 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 EMBL:CP002688 GO:GO:0003723
GO:GO:0006396 InterPro:IPR019955 PROSITE:PS50053 EMBL:AL592312
SUPFAM:SSF109905 IPI:IPI00534473 RefSeq:NP_568261.1
UniGene:At.51055 ProteinModelPortal:Q94CL4 SMR:Q94CL4
EnsemblPlants:AT5G12280.1 GeneID:831103 KEGG:ath:AT5G12280
TAIR:At5g12280 InParanoid:Q94CL4 PhylomeDB:Q94CL4
ProtClustDB:CLSN2689628 ArrayExpress:Q94CL4 Genevestigator:Q94CL4
Uniprot:Q94CL4
Length = 419
Score = 126 (49.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 117 QPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFL 176
+PF+ DP +F P + D+D + LTAQ V R G F L+++ QF+FL
Sbjct: 148 RPFLLSDPAPKFPDYVLPEGYTIEDVDTIFLTAQIVGRYGEEFWLDLIKEVDNKPQFEFL 207
Query: 177 RPQHSLFQYFTKL 189
+P S F YF +L
Sbjct: 208 KPADSKFDYFNRL 220
Score = 57 (25.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRI 52
PP E+R +DK A VAR G E +I
Sbjct: 89 PPREMRIHMDKIARVVARKGLRIERKI 115
Score = 56 (24.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 835 EKINQETGLFFKDSNSLAYYNITPG 859
+K+ + G F KD+ SLA+YN+ G
Sbjct: 388 QKLRGKAG-FLKDNTSLAHYNVGAG 411
>UNIPROTKB|F1NDX1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
EMBL:AADN02061998 IPI:IPI00821225 Ensembl:ENSGALT00000006062
ArrayExpress:F1NDX1 Uniprot:F1NDX1
Length = 398
Score = 148 (57.2 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
PP E+RN++DK A FVARNGPEFE + + NPKF+FL GD ++ YY++++
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGD-FYGYYKYKL 60
Score = 43 (20.2 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 126 KEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQ 172
K+ + I PP I L + A A G + L+Q+ Q N Q
Sbjct: 70 KQNQDIEAPPQIQPLPQPSLPPAAPIPAPQGTPSVEELIQQSQWNLQ 116
>MGI|MGI:106417 [details] [associations]
symbol:Cherp "calcium homeostasis endoplasmic reticulum
protein" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006874 "cellular calcium ion homeostasis" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=ISO] [GO:0033017 "sarcoplasmic reticulum membrane"
evidence=ISO] [GO:0044325 "ion channel binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051209 "release of sequestered calcium ion into cytosol"
evidence=ISO] [GO:0051533 "positive regulation of NFAT protein
import into nucleus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 MGI:MGI:106417
GO:GO:0005783 GO:GO:0048471 GO:GO:0008285 GO:GO:0051209
GO:GO:0003723 GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 HSSP:Q8CH02 CTD:10523
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716 KO:K12841
OrthoDB:EOG4BCDMG InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
EMBL:AF536541 EMBL:BC020488 IPI:IPI00229604 RefSeq:NP_613051.3
UniGene:Mm.30136 ProteinModelPortal:Q8CGZ0 SMR:Q8CGZ0 IntAct:Q8CGZ0
STRING:Q8CGZ0 PhosphoSite:Q8CGZ0 PaxDb:Q8CGZ0 PRIDE:Q8CGZ0
GeneID:27967 KEGG:mmu:27967 UCSC:uc009mga.1 InParanoid:Q8CGZ0
NextBio:306460 Bgee:Q8CGZ0 CleanEx:MM_CHERP Genevestigator:Q8CGZ0
Uniprot:Q8CGZ0
Length = 936
Score = 142 (55.0 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++ +
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKLALEQ 64
Query: 84 EGKVKEAPAP 93
+ + + AP
Sbjct: 65 QQLICKQQAP 74
Score = 60 (26.2 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 26/126 (20%), Positives = 53/126 (42%)
Query: 160 LTSLMQKEQRNYQFD------FLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSS 213
+ L+Q ++N FD P L QY L+ +Y+ + + P + F+ + S
Sbjct: 260 IARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSV-VQPVQLAFQ--QQIQS 316
Query: 214 MAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNF 273
+ +E + + + Q+ Q++Q++ + + Q+ + V T P +
Sbjct: 317 LKTQHEE--FVSSLAQQQQQQQQQQQQQPQPQPQPQIQLPQMEADVKATPPPPAPPPASA 374
Query: 274 PPPTTP 279
P PT P
Sbjct: 375 PAPTIP 380
Score = 45 (20.9 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 466 RW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
+W ++Q+++HL ++ A A+E +++L E
Sbjct: 113 QWSLQQQEQHLLALRQEQVTTAVAHAVEQQMQKLLE 148
Score = 41 (19.5 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 749 KGYDPKQARPPVVKPSPTDEFLISPITGE---KIPASKVQEHMRIGLLDPRWVEQRDKHL 805
K P A PP P+PT P + ++P S + G+ DP R
Sbjct: 361 KATPPPPAPPPASAPAPTIPPTTQPDDNKPPIQMPGSSEYD-TSAGVQDPAAAGPRGPGP 419
Query: 806 NEKI 809
+E+I
Sbjct: 420 HEQI 423
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 752 DPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRW-VEQRDKHLNEKIN 810
+P A PP+ +P ++P G +Q+ +W ++Q+++HL +
Sbjct: 77 EPTSAMPPLPQPPLAPTASLTPAQGTPSMDELIQQS--------QWSLQQQEQHLLA-LR 127
Query: 811 QETV 814
QE V
Sbjct: 128 QEQV 131
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 159 FLTSLMQKEQRNYQFDFLRPQ 179
F++SL Q++Q+ Q +PQ
Sbjct: 324 FVSSLAQQQQQQQQQQQQQPQ 344
>UNIPROTKB|H0YFR9 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905 EMBL:AC131009
EMBL:AC117500 HGNC:HGNC:10790 ChiTaRS:SFSWAP
Ensembl:ENST00000537164 Uniprot:H0YFR9
Length = 320
Score = 138 (53.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
V II PPP+V+ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 86 VAAIIPPPPDVQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 142
>RGD|1305279 [details] [associations]
symbol:Cherp "calcium homeostasis endoplasmic reticulum protein"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006396
"RNA processing" evidence=IEA] [GO:0006874 "cellular calcium ion
homeostasis" evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0033017 "sarcoplasmic reticulum
membrane" evidence=IDA] [GO:0044325 "ion channel binding"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=ISO] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 RGD:1305279
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0033017 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 IPI:IPI00362613
ProteinModelPortal:D3ZAX5 PRIDE:D3ZAX5 Ensembl:ENSRNOT00000017424
UCSC:RGD:1305279 Uniprot:D3ZAX5
Length = 946
Score = 142 (55.0 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++ +
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKLALEQ 64
Query: 84 EGKVKEAPAP 93
+ + + AP
Sbjct: 65 QQLICKQQAP 74
Score = 53 (23.7 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 26/126 (20%), Positives = 51/126 (40%)
Query: 160 LTSLMQKEQRNYQFD------FLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSS 213
+ L+Q ++N FD P L QY L+ +Y+ + + P + F+ + S
Sbjct: 271 IARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSV-VQPVQLAFQ--QQIQS 327
Query: 214 MAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNF 273
+ +E + Q+ Q++Q++ ++ Q+ + V T P +
Sbjct: 328 LKTQHEEF---VSSLAQQQQQQQQQQQPPQQPPQPQIQLPPMEADVKATPPPSAPPPASA 384
Query: 274 PPPTTP 279
P PT P
Sbjct: 385 PAPTIP 390
Score = 45 (20.9 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 466 RW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
+W ++Q+++HL ++ A A+E +++L E
Sbjct: 113 QWSLQQQEQHLLALRQEQVTTAVAHAVEQQMQKLLE 148
Score = 42 (19.8 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 749 KGYDPKQARPPVVKPSPTDEFLISPITGE---KIPASKVQEHMRIGLLDPRWVEQRDKHL 805
K P A PP P+PT P + ++P S + G+ DP R
Sbjct: 371 KATPPPSAPPPASAPAPTIPPTTQPDDNKPPIQMPGSSEYD-TSAGVQDPAAAGPRGPGP 429
Query: 806 NEKI 809
+E+I
Sbjct: 430 HEQI 433
Score = 41 (19.5 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 614 EEKEKIGPKRSHA 626
+EK GP RSH+
Sbjct: 748 QEKRNSGPSRSHS 760
Score = 41 (19.5 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 752 DPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRW-VEQRDKHLNEKIN 810
+P A PP+ +P ++P G +Q+ +W ++Q+++HL +
Sbjct: 77 EPTSAMPPLPQPPLAPTASLTPAQGTPSMDELIQQS--------QWSLQQQEQHLLA-LR 127
Query: 811 QETV 814
QE V
Sbjct: 128 QEQV 131
>UNIPROTKB|F5H5X1 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
EMBL:AC131009 EMBL:AC117500 HGNC:HGNC:10790 ChiTaRS:SFSWAP
IPI:IPI01012731 ProteinModelPortal:F5H5X1 SMR:F5H5X1
Ensembl:ENST00000535236 ArrayExpress:F5H5X1 Bgee:F5H5X1
Uniprot:F5H5X1
Length = 546
Score = 138 (53.6 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
V II PPP+V+ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 239 VAAIIPPPPDVQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 295
Score = 93 (37.8 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 33 IVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGK 86
I+++TA+FV R G +FE ++ + N +F+FL + YY+ K ++EG+
Sbjct: 4 IIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGR 57
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP + + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 243 IPPPPDVQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 292
Score = 48 (22.0 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 31/151 (20%), Positives = 71/151 (47%)
Query: 480 NQETVYAPGQA-IEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK--DDKLFP-GQA 535
+ + V AP +A +++ ++ ++ D G ++ +G + G ++ K P G+
Sbjct: 307 SMQAVSAPEEAPTDSAPEKPSDAGED--GAPEDAAEVGARAGSGGKKEASSSKTVPDGKL 364
Query: 536 IEASLKQLAERRTDIFGVGDEETAI----GKKIGEEDTRKDDKATWDGHTSSVEAA-TRA 590
++AS ++ F + +E + ++ +D DD+ + +G SS AA T
Sbjct: 365 VKASFAPIS------FAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSAANTNP 418
Query: 591 ARAN--ITLEDQIHQIHKVKGLLPDEEKEKI 619
A A + +E++ Q+ + + L + K+K+
Sbjct: 419 AVAPPCVVVEEKKPQLTQEE-LEAKQAKQKL 448
>UNIPROTKB|F1NDZ9 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AADN02061998 IPI:IPI00585527
Ensembl:ENSGALT00000006060 ArrayExpress:F1NDZ9 Uniprot:F1NDZ9
Length = 905
Score = 148 (57.2 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
PP E+RN++DK A FVARNGPEFE + + NPKF+FL GD ++ YY++++
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGD-FYGYYKYKL 60
Score = 43 (20.2 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 126 KEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQ 172
K+ + I PP I L + A A G + L+Q+ Q N Q
Sbjct: 70 KQNQDIEAPPQIQPLPQPSLPPAAPIPAPQGTPSVEELIQQSQWNLQ 116
>MGI|MGI:101760 [details] [associations]
symbol:Sfswap "splicing factor, suppressor of white-apricot
homolog (Drosophila)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 MGI:MGI:101760
GO:GO:0005634 GO:GO:0006355 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0048025 SUPFAM:SSF109905
InterPro:IPR019147 Pfam:PF09750 GeneTree:ENSGT00570000079144
CTD:6433 HOVERGEN:HBG079184 OMA:MYYSYYM OrthoDB:EOG4ZW59T
EMBL:AC114614 EMBL:AC114657 EMBL:AK031872 EMBL:AK140369
IPI:IPI00274030 RefSeq:NP_758480.2 UniGene:Mm.288714
ProteinModelPortal:Q3USH5 SMR:Q3USH5 STRING:Q3USH5 PRIDE:Q3USH5
Ensembl:ENSMUST00000053737 GeneID:231769 KEGG:mmu:231769
UCSC:uc008zsu.1 HOGENOM:HOG000168244 InParanoid:Q8CCZ1
NextBio:380743 Bgee:Q3USH5 Genevestigator:Q3USH5 Uniprot:Q3USH5
Length = 945
Score = 141 (54.7 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 15 TVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAY 74
T + A V II PPP+++ ++DK A +VARNG +FE+ +R + +F FL P Y+AY
Sbjct: 440 TSALAPVAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAY 497
Query: 75 YQHR 78
Y+ +
Sbjct: 498 YEFK 501
Score = 100 (40.3 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 82 (33.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 449 IPPPPDIQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 498
>RGD|1305004 [details] [associations]
symbol:Sfswap "splicing factor, suppressor of white-apricot
homolog (Drosophila)" species:10116 "Rattus norvegicus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
RGD:1305004 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 EMBL:CH473973 GO:GO:0048025
SUPFAM:SSF109905 InterPro:IPR019147 Pfam:PF09750
GeneTree:ENSGT00570000079144 HOVERGEN:HBG079184 OMA:MYYSYYM
OrthoDB:EOG4ZW59T EMBL:BC091384 IPI:IPI00370880 UniGene:Rn.12338
Ensembl:ENSRNOT00000001235 ArrayExpress:D3ZTQ1 Uniprot:D3ZTQ1
Length = 945
Score = 141 (54.7 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 15 TVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAY 74
T + A V II PPP+++ ++DK A +VARNG +FE+ +R + +F FL P Y+AY
Sbjct: 440 TSALAPVAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAY 497
Query: 75 YQHR 78
Y+ +
Sbjct: 498 YEFK 501
Score = 100 (40.3 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 82 (33.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 449 IPPPPDIQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 498
>UNIPROTKB|A4FV64 [details] [associations]
symbol:SF4 "SF4 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
KO:K13096 eggNOG:NOG299701 CTD:57794 HOVERGEN:HBG079172 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:DAAA02019030 EMBL:BC123792
IPI:IPI00838095 RefSeq:NP_001096748.1 UniGene:Bt.61513 SMR:A4FV64
STRING:A4FV64 Ensembl:ENSBTAT00000049124 GeneID:533971
KEGG:bta:533971 HOGENOM:HOG000253953 NextBio:20876213
Uniprot:A4FV64
Length = 635
Score = 117 (46.2 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
+ P +E Q + + PP E R +++K A FVA GPE E +N NP F+
Sbjct: 152 QSPDEDDEEDYEQWLEIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFS 211
Query: 64 FLSPGDPYH-AYYQHRVKDIREGKVKEAPAP 93
FL + YY+ +V +IR+ K AP
Sbjct: 212 FLHDKNSREFLYYRKKVAEIRKEAQKLQAAP 242
Score = 70 (29.7 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 134 PPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFL-RPQHSLFQYFTKLLEQ 192
PP + ++ + A+F+A G T +Q + N F FL P ++Y+ + LE+
Sbjct: 247 PPEDEEVK-NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEE 305
Query: 193 YTKILIPP 200
+ K P
Sbjct: 306 FRKAKAGP 313
>FB|FBgn0261872 [details] [associations]
symbol:scaf6 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;NAS]
[GO:0005681 "spliceosomal complex" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 EMBL:AE014296
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 OMA:FEGPWNS FlyBase:FBgn0261872
GenomeRNAi:3346235 NextBio:849268 EMBL:BT031129
RefSeq:NP_001014589.1 UniGene:Dm.3754 SMR:Q59E33 STRING:Q59E33
EnsemblMetazoa:FBtr0091474 GeneID:3346235 KEGG:dme:Dmel_CG33522
UCSC:CG33522-RA CTD:3346235 OrthoDB:EOG4FN2ZV Uniprot:Q59E33
Length = 960
Score = 150 (57.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 24 IYPPPE--VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
+ PP + +RNI+DK A FVARNGPEFE+ +Q + NPKF FL G+ + YYQ RV
Sbjct: 3 VQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE-FANYYQFRV 59
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 269 EPGNFPPPTTP 279
+PG FPP P
Sbjct: 513 QPGQFPPMQAP 523
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 226 DYIRYQEAQRKQEEARVEKDRV 247
+Y + + A RKQ+E + KD +
Sbjct: 720 EYYKVKNAARKQKEEEI-KDGI 740
>ZFIN|ZDB-GENE-040426-931 [details] [associations]
symbol:sfswap "splicing factor, suppressor of
white-apricot homolog (Drosophila)" species:7955 "Danio rerio"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 ZFIN:ZDB-GENE-040426-931 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 InterPro:IPR019147 Pfam:PF09750
GeneTree:ENSGT00570000079144 CTD:6433 EMBL:BX901878 EMBL:CR762410
IPI:IPI00494348 RefSeq:NP_957462.2 UniGene:Dr.15152
Ensembl:ENSDART00000143113 GeneID:394143 KEGG:dre:394143
NextBio:20815094 ArrayExpress:F1Q5L3 Bgee:F1Q5L3 Uniprot:F1Q5L3
Length = 958
Score = 140 (54.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 8 PPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSP 67
PPP + V II PPP+++ ++DK A +VARNG +FE+ +R +P+F+FL
Sbjct: 455 PPPVV--ATAAPVAAIIPPPPDIQPVIDKLAEYVARNGVKFETSVRAKN--DPRFDFLQS 510
Query: 68 GDPYHAYYQHR 78
Y++YY+ +
Sbjct: 511 WHQYNSYYEFK 521
Score = 112 (44.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 22 GIIYPP----P---EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAY 74
G++ PP P + I+++TANFV + G +FE ++ + GN +F+FL + Y
Sbjct: 181 GLLIPPDVELPATTKTHAIIERTANFVCKQGAQFEIVLKAKQAGNSQFDFLRFDHYLNPY 240
Query: 75 YQHRVKDIREGKVKEA 90
Y+H ++ ++EG+ A
Sbjct: 241 YKHILRAMKEGRYTPA 256
Score = 75 (31.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K +FDFL+ H Y+
Sbjct: 469 IPPPPDIQPV-ID--KL-AEYVARNGVKFETSVRAKNDP--RFDFLQSWHQYNSYY 518
>UNIPROTKB|F1P586 [details] [associations]
symbol:F1P586 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000061 Pfam:PF01805
PROSITE:PS50128 SMART:SM00648 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 InterPro:IPR019147 Pfam:PF09750
GeneTree:ENSGT00570000079144 OMA:MYYSYYM EMBL:AADN02034831
EMBL:AADN02034832 EMBL:AADN02034833 IPI:IPI00571108
Ensembl:ENSGALT00000003918 Uniprot:F1P586
Length = 951
Score = 139 (54.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIR-QNEIGNPKFNFLSPGDPYHAYYQHR 78
VV II PPP+++ ++DK A +VARNG +FE+ +R +N++ +F FL P Y+ YY+ +
Sbjct: 444 VVAIIPPPPDIQPVIDKLAEYVARNGIKFETSVRAKNDLS--RFEFLQPWHQYNPYYEFK 501
Score = 101 (40.6 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 202 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 261
Query: 86 KVKEAPA 92
+ AP+
Sbjct: 262 RYA-APS 267
Score = 81 (33.6 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 448 IPPPPDIQPV-ID--KL-AEYVARNGIKFETSVRAKNDLS-RFEFLQPWHQYNPYY 498
>UNIPROTKB|Q8IWX8 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] [GO:0051209 "release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0051533
"positive regulation of NFAT protein import into nucleus"
evidence=IMP] [GO:0044325 "ion channel binding" evidence=IPI]
[GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISS]
[GO:0007399 "nervous system development" evidence=TAS] [GO:0006874
"cellular calcium ion homeostasis" evidence=IDA] [GO:0008285
"negative regulation of cell proliferation" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
EMBL:AF536542 GO:GO:0048471 GO:GO:0008285 GO:GO:0007399
GO:GO:0051209 GO:GO:0003723 GO:GO:0006396 GO:GO:0051533
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0033017
EMBL:AC008764 EMBL:BC021294 EMBL:Y08265 EMBL:U94836 IPI:IPI00333010
RefSeq:NP_006378.3 UniGene:Hs.740364 HSSP:Q8CH02
ProteinModelPortal:Q8IWX8 SMR:Q8IWX8 IntAct:Q8IWX8
MINT:MINT-1637299 STRING:Q8IWX8 PhosphoSite:Q8IWX8 DMDM:296439404
PaxDb:Q8IWX8 PRIDE:Q8IWX8 Ensembl:ENST00000546361 GeneID:10523
KEGG:hsa:10523 UCSC:uc002nei.1 CTD:10523 GeneCards:GC19M016629
HGNC:HGNC:16930 HPA:HPA050647 neXtProt:NX_Q8IWX8 PharmGKB:PA26459
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InParanoid:Q8IWX8 KO:K12841 OrthoDB:EOG4BCDMG PhylomeDB:Q8IWX8
GenomeRNAi:10523 NextBio:39918 Bgee:Q8IWX8 CleanEx:HS_CHERP
Genevestigator:Q8IWX8 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
Uniprot:Q8IWX8
Length = 916
Score = 141 (54.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQ 76
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYK 57
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 449 IPASKVQEHMRIGLLDPRW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
IP ++ M + +W ++Q+++HL ++ A A+E +++L E
Sbjct: 96 IPPAQGAPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLE 148
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 159 FLTSLMQKEQRNYQ 172
F+TSL Q++Q+ Q
Sbjct: 324 FVTSLAQQQQQQQQ 337
>UNIPROTKB|J3QK89 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 EMBL:AC008764 HGNC:HGNC:16930 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
ProteinModelPortal:J3QK89 Ensembl:ENST00000198939 OMA:FEGPWNS
Uniprot:J3QK89
Length = 927
Score = 141 (54.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQ 76
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYK 57
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 449 IPASKVQEHMRIGLLDPRW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
IP ++ M + +W ++Q+++HL ++ A A+E +++L E
Sbjct: 96 IPPAQGAPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLE 148
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 159 FLTSLMQKEQRNYQ 172
F+TSL Q++Q+ Q
Sbjct: 335 FVTSLAQQQQQQQQ 348
>UNIPROTKB|J9P4M7 [details] [associations]
symbol:SFSWAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 InterPro:IPR019147 Pfam:PF09750
GeneTree:ENSGT00570000079144 CTD:6433 EMBL:AAEX03014588
RefSeq:XP_534636.2 Ensembl:ENSCAFT00000049679 GeneID:477438
KEGG:cfa:477438 Uniprot:J9P4M7
Length = 940
Score = 137 (53.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
V II PPP+++ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 442 VAAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 498
Score = 100 (40.3 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 82 (33.9 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 446 IPPPPDIQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 495
>UNIPROTKB|F1RFQ9 [details] [associations]
symbol:SFSWAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000061 Pfam:PF01805
PROSITE:PS50128 SMART:SM00648 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 InterPro:IPR019147 Pfam:PF09750
GeneTree:ENSGT00570000079144 CTD:6433 OMA:MYYSYYM EMBL:CU655912
RefSeq:XP_003132904.1 UniGene:Ssc.5416 Ensembl:ENSSSCT00000010683
GeneID:100511047 KEGG:ssc:100511047 Uniprot:F1RFQ9
Length = 944
Score = 137 (53.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
V II PPP+++ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 446 VAAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 502
Score = 100 (40.3 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 82 (33.9 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 450 IPPPPDIQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 499
>UNIPROTKB|Q12872 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
GO:GO:0005634 GO:GO:0006355 EMBL:CH471054 GO:GO:0006351
GO:GO:0003723 GO:GO:0048025 GO:GO:0006376 SUPFAM:SSF109905
InterPro:IPR019147 Pfam:PF09750 EMBL:AC131009 EMBL:U08377
EMBL:AC117500 EMBL:BC008707 EMBL:BC015953 EMBL:BC136678
EMBL:BC144364 IPI:IPI00290094 IPI:IPI00790550 PIR:A54037 PIR:B54037
PIR:C54037 RefSeq:NP_001248340.1 RefSeq:NP_004583.2
UniGene:Hs.308171 PDB:2E5Z PDB:2E60 PDBsum:2E5Z PDBsum:2E60
ProteinModelPortal:Q12872 SMR:Q12872 IntAct:Q12872 STRING:Q12872
PhosphoSite:Q12872 DMDM:292495067 PRIDE:Q12872
Ensembl:ENST00000261674 Ensembl:ENST00000541286 GeneID:6433
KEGG:hsa:6433 UCSC:uc001uja.1 CTD:6433 GeneCards:GC12P132196
H-InvDB:HIX0036782 HGNC:HGNC:10790 HPA:HPA039362 HPA:HPA040063
MIM:601945 neXtProt:NX_Q12872 PharmGKB:PA35706 eggNOG:NOG289028
HOVERGEN:HBG079184 InParanoid:Q12872 OMA:MYYSYYM OrthoDB:EOG4ZW59T
PhylomeDB:Q12872 ChiTaRS:SFSWAP EvolutionaryTrace:Q12872
GenomeRNAi:6433 NextBio:24987 ArrayExpress:Q12872 Bgee:Q12872
CleanEx:HS_SFRS8 Genevestigator:Q12872 GermOnline:ENSG00000061936
Uniprot:Q12872
Length = 951
Score = 138 (53.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
V II PPP+V+ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 446 VAAIIPPPPDVQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 502
Score = 98 (39.6 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TA+FV R G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 81 (33.6 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP + + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 450 IPPPPDVQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 499
Score = 48 (22.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 31/151 (20%), Positives = 71/151 (47%)
Query: 480 NQETVYAPGQA-IEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRK--DDKLFP-GQA 535
+ + V AP +A +++ ++ ++ D G ++ +G + G ++ K P G+
Sbjct: 514 SMQAVSAPEEAPTDSAPEKPSDAGED--GAPEDAAEVGARAGSGGKKEASSSKTVPDGKL 571
Query: 536 IEASLKQLAERRTDIFGVGDEETAI----GKKIGEEDTRKDDKATWDGHTSSVEAA-TRA 590
++AS ++ F + +E + ++ +D DD+ + +G SS AA T
Sbjct: 572 VKASFAPIS------FAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSAANTNP 625
Query: 591 ARAN--ITLEDQIHQIHKVKGLLPDEEKEKI 619
A A + +E++ Q+ + + L + K+K+
Sbjct: 626 AVAPPCVVVEEKKPQLTQEE-LEAKQAKQKL 655
>UNIPROTKB|E1C0P9 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AADN02024092 EMBL:AADN02024093
EMBL:AADN02024094 IPI:IPI00583949 ProteinModelPortal:E1C0P9
Ensembl:ENSGALT00000004113 Uniprot:E1C0P9
Length = 985
Score = 137 (53.3 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 358 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 417
Query: 64 FLSPGD-PYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 418 FLFENQTPAHVYYRWKLYSILQG 440
>RGD|1307882 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
RGD:1307882 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 GeneTree:ENSGT00390000010687
IPI:IPI00370764 RefSeq:XP_002727165.1 RefSeq:XP_002730000.1
ProteinModelPortal:D4A4B4 Ensembl:ENSRNOT00000011609 GeneID:315903
KEGG:rno:315903 UCSC:RGD:1307882 NextBio:670025 ArrayExpress:D4A4B4
Uniprot:D4A4B4
Length = 985
Score = 137 (53.3 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 357 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 416
Query: 64 FLSPGD-PYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 417 FLFENQTPAHVYYRWKLYSILQG 439
>UNIPROTKB|E2QUE5 [details] [associations]
symbol:SFSWAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 InterPro:IPR019147 Pfam:PF09750
GeneTree:ENSGT00570000079144 OMA:MYYSYYM EMBL:AAEX03014588
Ensembl:ENSCAFT00000010692 Uniprot:E2QUE5
Length = 993
Score = 137 (53.3 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
V II PPP+++ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 443 VAAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 499
Score = 100 (40.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 82 (33.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 447 IPPPPDIQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 496
>UNIPROTKB|E2R1V3 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AAEX03013650
Ensembl:ENSCAFT00000012763 Uniprot:E2R1V3
Length = 1028
Score = 137 (53.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 400 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 459
Query: 64 FLSPGD-PYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 460 FLFENQTPAHVYYRWKLYSILQG 482
>UNIPROTKB|O15042 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 HSSP:Q9NQ94 EMBL:AC018450 EMBL:AC026304 EMBL:BC006474
EMBL:BC016323 EMBL:BC105604 EMBL:BC111692 EMBL:AB002330
EMBL:BK000564 IPI:IPI00143753 IPI:IPI00790699 IPI:IPI00829908
RefSeq:NP_001073884.1 UniGene:Hs.596572 ProteinModelPortal:O15042
SMR:O15042 IntAct:O15042 STRING:O15042 PhosphoSite:O15042
PaxDb:O15042 PRIDE:O15042 Ensembl:ENST00000319822
Ensembl:ENST00000397933 Ensembl:ENST00000473835 GeneID:23350
KEGG:hsa:23350 UCSC:uc003evh.1 UCSC:uc003evi.1 UCSC:uc003evk.1
CTD:23350 GeneCards:GC03P142720 H-InvDB:HIX0003746 HGNC:HGNC:30855
HPA:HPA037545 neXtProt:NX_O15042 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 InParanoid:O15042 KO:K12842
OMA:SILQANS OrthoDB:EOG47SSD9 ChiTaRS:u2surp GenomeRNAi:23350
NextBio:45335 PMAP-CutDB:O15042 ArrayExpress:O15042 Bgee:O15042
Genevestigator:O15042 Uniprot:O15042
Length = 1029
Score = 137 (53.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 401 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 460
Query: 64 FLSPGD-PYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 461 FLFENQTPAHVYYRWKLYSILQG 483
>UNIPROTKB|F1SKE6 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:FP236268 RefSeq:XP_003358644.1
Ensembl:ENSSSCT00000012792 GeneID:100517309 KEGG:ssc:100517309
Uniprot:F1SKE6
Length = 1029
Score = 137 (53.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 401 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 460
Query: 64 FLSPGD-PYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 461 FLFENQTPAHVYYRWKLYSILQG 483
>MGI|MGI:1915208 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
MGI:MGI:1915208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 CTD:23350 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 KO:K12842 OMA:SILQANS
OrthoDB:EOG47SSD9 EMBL:AC159895 EMBL:BC068265 EMBL:AK011588
EMBL:AK011796 IPI:IPI00411097 IPI:IPI00467507 IPI:IPI00830853
RefSeq:NP_001108449.1 RefSeq:NP_080752.2 UniGene:Mm.292742
UniGene:Mm.392755 HSSP:Q01085 ProteinModelPortal:Q6NV83 SMR:Q6NV83
STRING:Q6NV83 PhosphoSite:Q6NV83 PaxDb:Q6NV83 PRIDE:Q6NV83
Ensembl:ENSMUST00000078374 Ensembl:ENSMUST00000079659 GeneID:67958
KEGG:mmu:67958 UCSC:uc009rba.2 UCSC:uc009rbb.2 UCSC:uc009rbd.1
GeneTree:ENSGT00390000010687 InParanoid:Q6NV83 NextBio:326070
Bgee:Q6NV83 CleanEx:MM_2610101N10RIK Genevestigator:Q6NV83
Uniprot:Q6NV83
Length = 1029
Score = 137 (53.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 401 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 460
Query: 64 FLSPGD-PYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 461 FLFENQTPAHVYYRWKLYSILQG 483
>UNIPROTKB|E1BKB9 [details] [associations]
symbol:SFSWAP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000061 Pfam:PF01805
PROSITE:PS50128 SMART:SM00648 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 InterPro:IPR019147 Pfam:PF09750
GeneTree:ENSGT00570000079144 CTD:6433 OMA:MYYSYYM EMBL:DAAA02044959
IPI:IPI00698935 RefSeq:NP_001179248.1 UniGene:Bt.20765
Ensembl:ENSBTAT00000000563 GeneID:512326 KEGG:bta:512326
NextBio:20870342 Uniprot:E1BKB9
Length = 942
Score = 135 (52.6 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 20 VVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
V II PPP+++ ++DK A +VARNG +FE+ +R + +F FL P Y+AYY+ +
Sbjct: 446 VATIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFK 502
Score = 100 (40.3 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 26 PPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG 85
P ++ I+++TANFV + G +FE ++ + N +F+FL + YY+ K ++EG
Sbjct: 204 PTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEG 263
Query: 86 K 86
+
Sbjct: 264 R 264
Score = 82 (33.9 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
I PP I + +D KL A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 450 IPPPPDIQPV-ID--KL-AEYVARNGLKFETSVRAKNDQ--RFEFLQPWHQYNAYY 499
>UNIPROTKB|F1S9W3 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051533 "positive regulation of NFAT protein import
into nucleus" evidence=IEA] [GO:0051209 "release of sequestered
calcium ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0044325 "ion channel
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:CU929691
Ensembl:ENSSSCT00000015139 OMA:THELPTH Uniprot:F1S9W3
Length = 852
Score = 142 (55.0 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++ +
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKLALEQ 64
Query: 84 EGKVKEAPAP 93
+ + + AP
Sbjct: 65 QQLICKQQAP 74
Score = 46 (21.3 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 449 IPASKVQEHMRIGLLDPRW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
IP ++ M + +W ++Q+++HL ++ A A+E +++L E
Sbjct: 96 IPPTQGTPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLE 148
Score = 37 (18.1 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 753 PKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDP 795
P A PP +P + P T E + VQ+ G P
Sbjct: 366 PAPAIPPTTQPDDNKPPIQMPGTSEYDASGGVQDPAASGPRGP 408
>UNIPROTKB|J9NZK1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
CTD:10523 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:AAEX03012307 RefSeq:XP_852773.2
ProteinModelPortal:J9NZK1 Ensembl:ENSCAFT00000050032 GeneID:610237
KEGG:cfa:610237 Uniprot:J9NZK1
Length = 916
Score = 142 (55.0 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++ +
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKLALEQ 64
Query: 84 EGKVKEAPAP 93
+ + + AP
Sbjct: 65 QQLICKQQAP 74
Score = 46 (21.3 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 449 IPASKVQEHMRIGLLDPRW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
IP ++ M + +W ++Q+++HL ++ A A+E +++L E
Sbjct: 96 IPPAQGAPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLE 148
Score = 38 (18.4 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 758 PPVVKPSPTDEFLISPIT 775
PP P+PT I P T
Sbjct: 357 PPAPPPAPTPTPAIPPTT 374
>UNIPROTKB|E2RHU5 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AAEX03012307 Ensembl:ENSCAFT00000024839
NextBio:20895802 Uniprot:E2RHU5
Length = 940
Score = 142 (55.0 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++ +
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKLALEQ 64
Query: 84 EGKVKEAPAP 93
+ + + AP
Sbjct: 65 QQLICKQQAP 74
Score = 46 (21.3 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 449 IPASKVQEHMRIGLLDPRW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
IP ++ M + +W ++Q+++HL ++ A A+E +++L E
Sbjct: 96 IPPAQGAPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLE 148
Score = 38 (18.4 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 758 PPVVKPSPTDEFLISPIT 775
PP P+PT I P T
Sbjct: 357 PPAPPPAPTPTPAIPPTT 374
>UNIPROTKB|E2RCV3 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585
Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443
SMART:SM00648 GO:GO:0005634 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 KO:K13096 CTD:57794 GeneTree:ENSGT00410000025695
EMBL:AAEX03012271 RefSeq:XP_864993.2 Ensembl:ENSCAFT00000022747
GeneID:476661 KEGG:cfa:476661 Uniprot:E2RCV3
Length = 636
Score = 113 (44.8 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
+ P ++E Q + + PP E R +++K A FVA GPE E +N NP F+
Sbjct: 153 QSPDEDEEEDYEQWLEIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFS 212
Query: 64 FLSPGDPYH-AYYQHRVKDIRE 84
FL + YY+ +V +IR+
Sbjct: 213 FLHDKNSREFLYYRKKVAEIRK 234
Score = 69 (29.3 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 143 DIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFL-RPQHSLFQYFTKLLEQYTKILIPP 200
++ + A+F+A G T +Q + N F FL P ++Y+ + LE++ K P
Sbjct: 256 NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKAGP 314
Score = 38 (18.4 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 195 KILIPPKDMMFRLKDESSSMAAILD 219
K+ +PP +++ R D S S ++ D
Sbjct: 384 KVELPPAELVQRDVDASPSPLSVQD 408
>UNIPROTKB|A8E648 [details] [associations]
symbol:CHERP "CHERP protein" species:9913 "Bos taurus"
[GO:0051533 "positive regulation of NFAT protein import into
nucleus" evidence=IEA] [GO:0051209 "release of sequestered calcium
ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 CTD:10523 eggNOG:NOG267701 HOGENOM:HOG000010294
HOVERGEN:HBG052716 KO:K12841 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 GeneTree:ENSGT00600000084415 OMA:FEGPWNS
EMBL:DAAA02019093 EMBL:BC153841 IPI:IPI00871125
RefSeq:NP_001103268.1 UniGene:Bt.46185 Ensembl:ENSBTAT00000006959
GeneID:525110 KEGG:bta:525110 InParanoid:A8E648 NextBio:20874102
Uniprot:A8E648
Length = 916
Score = 142 (55.0 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83
PP E+RN++DK A FVARNGPEFE + + NPKF+FL G+ +++YY+ ++ +
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKLALEQ 64
Query: 84 EGKVKEAPAP 93
+ + + AP
Sbjct: 65 QQLICKQQAP 74
Score = 44 (20.5 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 466 RW-VEQRDKHLNEKINQETVYAPGQAIEASLKQLAE 500
+W ++Q+++HL ++ A A+E +++L E
Sbjct: 113 QWNLQQQEQHLLALRQEQVTAAVAHALEQQMQKLLE 148
Score = 38 (18.4 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 758 PPVVKPSPTDEFLISPIT 775
PP P+PT I P T
Sbjct: 357 PPAPPPAPTPAPAIPPTT 374
>UNIPROTKB|J9P8U4 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:AAEX03012271
Ensembl:ENSCAFT00000049900 Uniprot:J9P8U4
Length = 640
Score = 113 (44.8 bits), Expect = 8.7e-05, Sum P(3) = 8.6e-05
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
+ P ++E Q + + PP E R +++K A FVA GPE E +N NP F+
Sbjct: 157 QSPDEDEEEDYEQWLEIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFS 216
Query: 64 FLSPGDPYH-AYYQHRVKDIRE 84
FL + YY+ +V +IR+
Sbjct: 217 FLHDKNSREFLYYRKKVAEIRK 238
Score = 69 (29.3 bits), Expect = 8.7e-05, Sum P(3) = 8.6e-05
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 143 DIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFL-RPQHSLFQYFTKLLEQYTKILIPP 200
++ + A+F+A G T +Q + N F FL P ++Y+ + LE++ K P
Sbjct: 260 NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKAGP 318
Score = 38 (18.4 bits), Expect = 8.7e-05, Sum P(3) = 8.6e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 195 KILIPPKDMMFRLKDESSSMAAILD 219
K+ +PP +++ R D S S ++ D
Sbjct: 388 KVELPPAELVQRDVDASPSPLSVQD 412
>TAIR|locus:2194050 [details] [associations]
symbol:AT1G18050 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
EMBL:CP002684 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
IPI:IPI00527567 RefSeq:NP_173245.1 UniGene:At.51658
ProteinModelPortal:F4IAL8 SMR:F4IAL8 EnsemblPlants:AT1G18050.1
GeneID:838385 KEGG:ath:AT1G18050 Uniprot:F4IAL8
Length = 285
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 27 PPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVK--DIRE 84
PP R D +A V GPE E ++ + GNPK++F D YHAYYQ ++ + E
Sbjct: 147 PPRTRYYADSSARLVFMEGPEMERKMMTSYAGNPKYSFFWSSDRYHAYYQKKLAGYQLHE 206
Query: 85 G 85
G
Sbjct: 207 G 207
>ZFIN|ZDB-GENE-070912-400 [details] [associations]
symbol:u2surp "U2 snRNP-associated SURP domain
containing" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070912-400 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 EMBL:BX248497 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 OMA:SILQANS
OrthoDB:EOG47SSD9 GeneTree:ENSGT00390000010687 IPI:IPI00613709
UniGene:Dr.75427 Ensembl:ENSDART00000132651 Uniprot:B0S5J3
Length = 923
Score = 137 (53.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 8 PPPGK-----DETVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPK 61
PPP K ++T+SQA+V ++ P + +++ + FV R GP FE+ I EI NP
Sbjct: 333 PPPPKCKEEFEKTLSQAIVKVVIPTERNLLSLIHRMIEFVVREGPMFEAMIMNREINNPL 392
Query: 62 FNFLSPGD-PYHAYYQHRVKDIREGK 86
+ FL P H YY+ ++ I +G+
Sbjct: 393 YRFLFENQSPAHVYYRWKLYTILQGE 418
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 598 EDQIHQIHKVKGLLPDEEKEKI 619
+D +I K KG L DEE++K+
Sbjct: 457 DDDDEEICK-KGSLKDEERDKL 477
>UNIPROTKB|E7ET15 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AC018450
EMBL:AC026304 HGNC:HGNC:30855 ChiTaRS:u2surp IPI:IPI00966302
ProteinModelPortal:E7ET15 SMR:E7ET15 Ensembl:ENST00000493598
ArrayExpress:E7ET15 Bgee:E7ET15 Uniprot:E7ET15
Length = 1028
Score = 131 (51.2 bits), Expect = 0.00013, P = 0.00013
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 400 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 459
Query: 64 FLSPGD-PYHAYYQHRVKDI 82
FL P H YY+ ++ I
Sbjct: 460 FLFENQTPAHVYYRWKLYSI 479
>MGI|MGI:1917866 [details] [associations]
symbol:Sugp1 "SURP and G patch domain containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
MGI:MGI:1917866 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701 CTD:57794
HOVERGEN:HBG079172 OMA:EKVAMEN OrthoDB:EOG4VX24Z EMBL:AF521129
EMBL:AK156508 EMBL:BC120919 EMBL:BC120920 IPI:IPI00454015
RefSeq:NP_081757.1 UniGene:Mm.17665 PDB:1UG0 PDB:1X4O PDBsum:1UG0
PDBsum:1X4O ProteinModelPortal:Q8CH02 SMR:Q8CH02 STRING:Q8CH02
PhosphoSite:Q8CH02 PaxDb:Q8CH02 PRIDE:Q8CH02
Ensembl:ENSMUST00000011450 GeneID:70616 KEGG:mmu:70616
UCSC:uc009lyn.1 GeneTree:ENSGT00410000025695 InParanoid:Q8CH02
EvolutionaryTrace:Q8CH02 NextBio:331984 Bgee:Q8CH02 CleanEx:MM_SF4
Genevestigator:Q8CH02 GermOnline:ENSMUSG00000011306 Uniprot:Q8CH02
Length = 643
Score = 111 (44.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
+ P ++E Q + + PP E R +++K A FVA GPE E ++ NP F
Sbjct: 158 QSPDDDEEEDYEQWLEIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFT 217
Query: 64 FLSPGDPYH-AYYQHRVKDIREGKVKEAPAP 93
FL + YY+ +V +IR KEA P
Sbjct: 218 FLHDKNSREFLYYRRKVAEIR----KEAQKP 244
Score = 64 (27.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 124 PPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSL 182
P + ++ P A +L KL A+F+A G T +Q + N F FL P
Sbjct: 244 PQAATQKVSPPEDEEAKNL-AEKL-ARFIADGGPEVETIALQNNRENQAFSFLYDPNSQG 301
Query: 183 FQYFTKLLEQYTK 195
++Y+ + L+++ K
Sbjct: 302 YRYYRQKLDEFRK 314
>UNIPROTKB|F1NAQ9 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
OMA:EKVAMEN GeneTree:ENSGT00410000025695 EMBL:AADN02071815
IPI:IPI00580066 Ensembl:ENSGALT00000004744 Uniprot:F1NAQ9
Length = 619
Score = 110 (43.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
+ P ++E Q + + PP E R +V+K A FVA GPE E ++ NP F+
Sbjct: 152 QSPDEDEEEDYEQWLEIKVLPPEDAETRQVVEKLARFVAEGGPELEKVAMEDYKDNPAFS 211
Query: 64 FLSPGDPYH-AYYQHRVKDIRE 84
FL + YY+ +V +IR+
Sbjct: 212 FLHDKNSREFLYYRKKVAEIRK 233
Score = 63 (27.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 149 AQFVARNGRGFLTSLMQKEQRNYQFDFL-RPQHSLFQYFTKLLEQYTK 195
A+F+A G +Q + N+ F FL P ++Y+ + LE++ K
Sbjct: 258 ARFIADGGPEVEAIALQNNRENHAFRFLYEPNSKGYKYYRQKLEEFRK 305
>UNIPROTKB|F1MHP1 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 OMA:SILQANS GeneTree:ENSGT00390000010687
EMBL:DAAA02002870 IPI:IPI00701440 Ensembl:ENSBTAT00000012063
Uniprot:F1MHP1
Length = 1035
Score = 137 (53.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 8 PPPGKDE---TVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
PP K++ T+SQA+V ++ P + ++ + FV R GP FE+ I EI NP F
Sbjct: 401 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 460
Query: 64 FLSPGD-PYHAYYQHRVKDIREG 85
FL P H YY+ ++ I +G
Sbjct: 461 FLFENQTPAHVYYRWKLYSILQG 483
Score = 40 (19.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 219 DEVKYRADYIRYQEAQRKQE-EARVEKDR 246
++V++ D + ++ ++KQE E +E++R
Sbjct: 873 EQVEHYRDKLLQRKKKKKQEKEKELERER 901
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 125 (49.1 bits), Expect = 0.00035, P = 0.00035
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 26 PP--PEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIR 83
PP P+ + I+DK A +VAR GP FE+ + + NP F+FL P P + YY+ ++ IR
Sbjct: 432 PPQSPQEQQIIDKLAEYVARTGPRFETFTFEKQRNNPLFSFLKPRSPANDYYKWKLWTIR 491
>UNIPROTKB|Q8IWZ8 [details] [associations]
symbol:SUGP1 "SURP and G-patch domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701
EMBL:AF521128 EMBL:AY072916 EMBL:AY072917 EMBL:AC004475
EMBL:BC063784 EMBL:AL137286 EMBL:AL713757 IPI:IPI00103419
IPI:IPI00337787 PIR:T02299 RefSeq:NP_757386.2 UniGene:Hs.515274
ProteinModelPortal:Q8IWZ8 SMR:Q8IWZ8 IntAct:Q8IWZ8
MINT:MINT-3047702 STRING:Q8IWZ8 PhosphoSite:Q8IWZ8 DMDM:61216666
PaxDb:Q8IWZ8 PRIDE:Q8IWZ8 Ensembl:ENST00000247001
Ensembl:ENST00000334782 GeneID:57794 KEGG:hsa:57794 UCSC:uc002nmh.3
CTD:57794 GeneCards:GC19M019389 HGNC:HGNC:18643 HPA:HPA004890
MIM:607992 neXtProt:NX_Q8IWZ8 PharmGKB:PA165394338
HOVERGEN:HBG079172 InParanoid:Q8IWZ8 OMA:EKVAMEN OrthoDB:EOG4VX24Z
PhylomeDB:Q8IWZ8 ChiTaRS:SUGP1 GenomeRNAi:57794 NextBio:64730
ArrayExpress:Q8IWZ8 Bgee:Q8IWZ8 CleanEx:HS_SF4
Genevestigator:Q8IWZ8 GermOnline:ENSG00000105705 Uniprot:Q8IWZ8
Length = 645
Score = 107 (42.7 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 6 EKPPPGKDETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFN 63
+ P ++E Q + + PP E R +++K A FVA GPE E ++ NP F
Sbjct: 162 QSPDEDEEEDYEQWLEIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMEDYKDNPAFA 221
Query: 64 FLSPGDPYH-AYYQHRVKDIREGKVKEAPA 92
FL + YY+ +V +IR+ K A
Sbjct: 222 FLHDKNSREFLYYRKKVAEIRKEAQKSQAA 251
Score = 69 (29.3 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 134 PPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFL-RPQHSLFQYFTKLLEQ 192
PP + ++ + A+F+A G T +Q + N F FL P ++Y+ + LE+
Sbjct: 257 PPEDEEVK-NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEE 315
Query: 193 YTK 195
+ K
Sbjct: 316 FRK 318
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 195 KILIPPKDMMFRLKDESSSMAAILD 219
K+ +PP +++ R D S S ++ D
Sbjct: 393 KVELPPAELVQRDVDASPSPLSVQD 417
>RGD|1310496 [details] [associations]
symbol:Sugp1 "SURP and G patch domain containing 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
RGD:1310496 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701 CTD:57794
HOVERGEN:HBG079172 OrthoDB:EOG4VX24Z GeneTree:ENSGT00410000025695
EMBL:BC079341 IPI:IPI00206072 RefSeq:NP_001011920.1
RefSeq:XP_003751619.1 UniGene:Rn.67035 ProteinModelPortal:Q68FU8
SMR:Q68FU8 STRING:Q68FU8 PhosphoSite:Q68FU8 PRIDE:Q68FU8
Ensembl:ENSRNOT00000027826 GeneID:290666 KEGG:rno:290666
UCSC:RGD:1310496 InParanoid:Q68FU8 NextBio:631453
ArrayExpress:Q68FU8 Genevestigator:Q68FU8
GermOnline:ENSRNOG00000020510 Uniprot:Q68FU8
Length = 644
Score = 104 (41.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 24 IYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYH-AYYQHRVK 80
+ PP E R +++K A FVA GPE E ++ NP F FL + YY+ +V
Sbjct: 177 VSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRKKVA 236
Query: 81 DIREGKVKEAPAP 93
+IR KEA P
Sbjct: 237 EIR----KEAQKP 245
Score = 67 (28.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 124 PPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSL 182
P + ++ P A +L KL A+F+A G T +Q + N F FL P
Sbjct: 245 PQAATQKVSPPEDEEAKNL-AEKL-ARFIADGGPEVETIALQNNRENQAFSFLYDPNSQG 302
Query: 183 FQYFTKLLEQYTK 195
++Y+ + LE++ K
Sbjct: 303 YRYYKQKLEEFRK 315
>UNIPROTKB|K7EM86 [details] [associations]
symbol:SUGP1 "SURP and G-patch domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 SUPFAM:SSF109905
EMBL:AC022543 EMBL:AC004475 HGNC:HGNC:18643 EMBL:AC003967
Ensembl:ENST00000589144 Uniprot:K7EM86
Length = 78
Score = 98 (39.6 bits), Expect = 0.00053, P = 0.00053
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYH-AYYQHRVKDIREGKV 87
E R +++K A FVA GPE E ++ NP F FL + YY+ +V +IR+
Sbjct: 2 ETRKVIEKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVAEIRKEAQ 61
Query: 88 KEAPA 92
K A
Sbjct: 62 KSQAA 66
>TAIR|locus:2161705 [details] [associations]
symbol:AT5G55100 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
EMBL:CP002688 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
InterPro:IPR019147 Pfam:PF09750 UniGene:At.24236 eggNOG:NOG289028
OMA:CAYTQLI EMBL:AY039984 EMBL:AY096458 IPI:IPI00533427
RefSeq:NP_568820.1 ProteinModelPortal:Q94BN8 IntAct:Q94BN8
EnsemblPlants:AT5G55100.2 GeneID:835601 KEGG:ath:AT5G55100
InParanoid:Q94BN8 ProtClustDB:CLSN2690020 Genevestigator:Q94BN8
Uniprot:Q94BN8
Length = 844
Score = 95 (38.5 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 26 PPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV--KDI 82
PP E + I+ +T++FV+++G + E +R + NP F FL P H Y++ V +++
Sbjct: 145 PPTEKLHQIITRTSSFVSKHGGQSEIVLRVKQGDNPTFGFLMPDHHLHLYFRFLVDHQEL 204
Query: 83 REGK 86
GK
Sbjct: 205 LTGK 208
Score = 84 (34.6 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 27/127 (21%), Positives = 61/127 (48%)
Query: 122 KDPPK-EFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQH 180
K PK E + I +P + +D + F+ +NG+ +L+ ++ + F FLRP
Sbjct: 319 KSQPKLELQ-IVEPTTEMKRVIDKI---VDFIQKNGKELEATLVAQDVKYGMFPFLRPSS 374
Query: 181 SLFQYFTKLLEQYTKILIPPKDMMFRLKD-ESSSMAAILDEVKYRADYIRYQEAQRKQEE 239
Y+ K+L++ ++ K ++ R +D + M + + K+ + ++ +K E+
Sbjct: 375 LYHAYYRKVLQEAEELKSGDKGVIIRKEDVKQEKMGNAVKDSKHGFGSVLPDDSAKK-EK 433
Query: 240 ARVEKDR 246
++ D+
Sbjct: 434 LKMVSDK 440
Score = 37 (18.1 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 312 RRPEDDDMQIGSDEEN 327
+R ED M+ G +EE+
Sbjct: 624 QRDEDGKMEQGEEEES 639
>ZFIN|ZDB-GENE-070410-141 [details] [associations]
symbol:zgc:163098 "zgc:163098" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070410-141 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 GeneTree:ENSGT00390000010687
EMBL:BX927261 IPI:IPI00997649 Ensembl:ENSDART00000122919
ArrayExpress:F1QSP9 Bgee:F1QSP9 Uniprot:F1QSP9
Length = 942
Score = 123 (48.4 bits), Expect = 0.00086, P = 0.00086
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 ETVSQAVVGIIYPPPE-VRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPY- 71
+T+S+AVV ++ PP + ++ + FV R GP FE+ I E NP F FL
Sbjct: 321 KTLSEAVVTVVIPPERNLLGLIHRMIEFVVREGPMFEAMIMNREKNNPDFRFLFDNKSQE 380
Query: 72 HAYYQHRVKDIREGK 86
H YY+ ++ I +G+
Sbjct: 381 HVYYRWKLYSILQGE 395
>ZFIN|ZDB-GENE-040407-1 [details] [associations]
symbol:cherp "calcium homeostasis endoplasmic
reticulum protein" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-040407-1
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905
PROSITE:PS51391 EMBL:BC171627 IPI:IPI00490676 UniGene:Dr.75231
ArrayExpress:B7ZVL5 Bgee:B7ZVL5 Uniprot:B7ZVL5
Length = 910
Score = 134 (52.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 26 PPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
PP E+RN++DK A FVARNGPEFE + + N KF+FL G+ + YY++++
Sbjct: 6 PPEDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNAKFSFLFGGE-FFGYYKYKL 60
Score = 37 (18.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 751 YDPKQARPP 759
+DP QA PP
Sbjct: 424 FDPSQAPPP 432
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 910 711 0.00084 121 3 11 23 0.46 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 615 (65 KB)
Total size of DFA: 342 KB (2168 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 62.66u 0.08s 62.74t Elapsed: 00:00:53
Total cpu time: 62.68u 0.08s 62.76t Elapsed: 00:00:54
Start: Thu Aug 15 12:42:25 2013 End: Thu Aug 15 12:43:19 2013