RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10054
(910 letters)
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 169 bits (428), Expect = 8e-49
Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 137 ISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKI 196
IS D++++KLTA++ A++ + ++ K+ + +F+ H L + FT + QY ++
Sbjct: 3 ISRRDMEVIKLTARYYAKDKS-IVEQMISKDGEA-RLNFMNSSHPLHKTFTDFVAQYKRV 60
Query: 197 LIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHD 256
+ S ILD R Y +++ + ++ + VE ++ +A I W
Sbjct: 61 YSFTGQ------EIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDK 114
Query: 257 FVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQE 290
F V F +++ R +
Sbjct: 115 FTQVAKFSIPEDTE-IFEGSLDLEQMRLRRVQTG 147
Score = 45.8 bits (108), Expect = 8e-06
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 32 NIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRV 79
++ TA + A++ E I ++ G + NF++ P H + V
Sbjct: 9 EVIKLTARYYAKDKSIVEQMISKD--GEARLNFMNSSHPLHKTFTDFV 54
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60,
SURP domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.217.1.1
Length = 85
Score = 127 bits (320), Expect = 5e-35
Identities = 68/80 (85%), Positives = 73/80 (91%)
Query: 116 EQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDF 175
++ VPK+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDF
Sbjct: 6 QETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDF 65
Query: 176 LRPQHSLFQYFTKLLEQYTK 195
LRPQHSLF YFTKL+EQYTK
Sbjct: 66 LRPQHSLFNYFTKLVEQYTK 85
Score = 66.8 bits (163), Expect = 8e-14
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 4 DVEKPPPGKDETVSQAVVGIIYPPP---EVRNIVDKTANFVARNGPEFESRIRQNEIGNP 60
V K PP + E I PP ++V TA FVARNG +F +++ Q E N
Sbjct: 9 IVPKEPPPEFEF-------IADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNY 61
Query: 61 KFNFLSPGDPYHAYYQHRVK 80
+F+FL P Y+ V+
Sbjct: 62 QFDFLRPQHSLFNYFTKLVE 81
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 104 bits (262), Expect = 3e-27
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 9 PPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPG 68
+ V II PPP+V+ ++DK A +VARNG +FE+ +R + +F FL P
Sbjct: 3 SGSSGTSALAPVAAIIPPPPDVQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPW 60
Query: 69 DPYHAYYQHRVKDIREGKVKEAPAPA 94
Y+AYY+ + + + + ++
Sbjct: 61 HQYNAYYEFKKQFFLQKEGGDSMQAV 86
Score = 44.5 bits (105), Expect = 5e-06
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 131 IADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLL 190
I PP + ++ A++VARNG F TS+ K + +F+FL+P H Y+
Sbjct: 18 IPPPPDVQP----VIDKLAEYVARNGLKFETSVRAKN--DQRFEFLQPWHQYNAYYEFKK 71
Query: 191 EQY 193
+ +
Sbjct: 72 QFF 74
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.217.1.1
Length = 64
Score = 103 bits (259), Expect = 4e-27
Identities = 48/62 (77%), Positives = 56/62 (90%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVK 88
EVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL+P DPYHAYY+H+V + +EGK +
Sbjct: 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 61
Query: 89 EA 90
E
Sbjct: 62 EP 63
Score = 57.4 bits (139), Expect = 7e-11
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 143 DIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQY 193
+IV TA FVARNG F + Q E N +F+FL P Y+ + ++
Sbjct: 5 NIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF 55
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, RNA
binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Length = 88
Score = 100 bits (251), Expect = 9e-26
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 11 GKDETVSQAVVGIIYPP--PEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SP 67
+E Q + + PP E R +++K A FVA GPE E ++ NP F FL
Sbjct: 6 SGEEDYEQWLEIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDK 65
Query: 68 GDPYHAYYQHRVKDIREGKVKEA 90
YY+ +V +IR+
Sbjct: 66 NSREFLYYRRKVAEIRKSGPSSG 88
Score = 47.1 bits (112), Expect = 7e-07
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 134 PPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSLFQYFTKLLEQ 192
PP + +++ A+FVA G M+ + N F FL F Y+ + + +
Sbjct: 21 PPEGAET-RRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAE 79
Query: 193 Y 193
Sbjct: 80 I 80
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Mus
musculus} SCOP: a.217.1.1
Length = 78
Score = 99 bits (249), Expect = 1e-25
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 17 SQAVVGIIYPP--PEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPGDPYHA 73
S G + PP E +N+ +K A F+A GPE E+ QN N F+FL P +
Sbjct: 2 SSGSSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYR 61
Query: 74 YYQHRVKDIREGK 86
YY+ ++ + R+
Sbjct: 62 YYRQKLDEFRKSG 74
Score = 46.0 bits (109), Expect = 1e-06
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 134 PPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSLFQYFTKLLEQ 192
PP ++ + A+F+A G T +Q + N F FL P ++Y+ + L++
Sbjct: 11 PPEDEEA-KNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDE 69
Query: 193 Y 193
+
Sbjct: 70 F 70
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 98.9 bits (246), Expect = 7e-25
Identities = 20/93 (21%), Positives = 40/93 (43%)
Query: 9 PPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPG 68
+S + P ++ I+++TA+FV R G +FE ++ + N +F+FL
Sbjct: 6 SGVAPLGLSVPSDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFD 65
Query: 69 DPYHAYYQHRVKDIREGKVKEAPAPAQKALTTA 101
+ YY+ K ++EG+ +
Sbjct: 66 HYLNPYYKFIQKAMKEGRYTVLAENKSDEKKKS 98
Score = 60.4 bits (146), Expect = 2e-11
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 121 PKDPPKEFEFIADPPSISALDL-DIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQ 179
P +D + I++ TA FV R G F L K+ RN QFDFLR
Sbjct: 6 SGVAPLGLSVPSDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFD 65
Query: 180 HSLFQYFTKLLEQY 193
H L Y+ + +
Sbjct: 66 HYLNPYYKFIQKAM 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 5e-09
Identities = 97/640 (15%), Positives = 180/640 (28%), Gaps = 195/640 (30%)
Query: 346 MQEEINEDDMQEGTTSEEESDNENEEA-RKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPP 404
M E E Q E+A + + KD VQDM + S+EE + I
Sbjct: 7 MDFETGEHQYQYKDILSV-----FEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIMSK 58
Query: 405 PPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLD 464
S L Q + + V++ + + S ++ R
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMV---------QKFVEEVLRINYKFL-MSPIKTEQR----Q 104
Query: 465 P-----RWVEQRDKHLNEKINQETVYAPGQ--------AIEASLKQL-AERRTDIFGVGD 510
P ++EQRD+ N+ NQ V+A + +L +L + I GV
Sbjct: 105 PSMMTRMYIEQRDRLYND--NQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL- 159
Query: 511 EETAIGK------------------------KIGEEDTRKDDKLFPGQA----IEASLKQ 542
GK + ++ + L Q I+ +
Sbjct: 160 ---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTS 215
Query: 543 LAERRTDI-FGVGDEETAIGKKIGEEDTRK-----DDKATWDGHTSSVEA---------A 587
++ ++I + + + + + + + + + A
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQN--AKAWNAFNLSCKILLT 271
Query: 588 TR----AARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKP 643
TR + I H L PDE K + K LPR + N
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTN---- 326
Query: 644 GNFPPPTTPDEVGARV------------LMQERMDNG-EEDLE--EDEEMEEEYGQRRPE 688
P + + + +++ E L E E + +
Sbjct: 327 -----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------ 375
Query: 689 DDDMQIDMEEDS-------------SSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQP 735
D + + + + + + SL + +P S PSI
Sbjct: 376 -DRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 736 PPLPPAPD------KVV----VKKGYDPKQARPPVVKPSPTDEFLISPITG---EKIPAS 782
+ +V + K +D PP D++ S I G + I
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP-----YLDQYFYSHI-GHHLKNIEHP 487
Query: 783 KVQEHMRIGLLDPRWVEQRDKH----------LNEKINQETVYAP--------------- 817
+ R+ LD R++EQ+ +H + + Q Y P
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 818 --EFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYN 855
+FL K+ + + + L +D A +
Sbjct: 548 ILDFLPKIEENLICSKYTD--LLR-IALMAEDE---AIFE 581
Score = 50.6 bits (120), Expect = 3e-06
Identities = 94/662 (14%), Positives = 189/662 (28%), Gaps = 224/662 (33%)
Query: 4 DVEKPPPGKDETVSQAVVGIIY--PPPEVRN------IVDKTANFVARNGPEF-ESRIRQ 54
DV+ P +S+ + I ++ K V + F E +R
Sbjct: 37 DVQDMP---KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRI 89
Query: 55 NEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVT 114
N + FL P + Q ++ T +Q++ L
Sbjct: 90 N------YKFLM--SPIKTEQR------------------QPSMMTRMYIEQRDRLY--N 121
Query: 115 TEQPFVPKDPPKEFEFIADPPSISALDLDIVKLT-AQFVARNG-RGF----LT-SLMQKE 167
Q F + + L +++L A+ V +G G + +
Sbjct: 122 DNQVFAKYNVSR-------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 168 QRNYQFDF---------LRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAIL 218
+ + DF ++ + KLL Q D +K +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-------I 227
Query: 219 DEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDF-----VVVETVDYMPGEPGNF 273
++ +R + E + V A+ W+ F +++ T
Sbjct: 228 HSIQ---AELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRF--------- 274
Query: 274 PPPTTPDEVGARVLMQERMDNGEEDLEEDEEME--EEYGQRRPEDDDMQ----------- 320
D + A +D+ L DE +Y RP+D +
Sbjct: 275 --KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 321 IG---SDEEN--DYYNARMRGRNANRGRGRMQ---EEINEDDMQE--------------- 357
I D D + + N ++ ++ + + ++
Sbjct: 333 IAESIRDGLATWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 358 ---------GTTSEEESDNENEEARKS---KEAKDNT-QVQDMEEDSSSEEEQEDIPPPP 404
+ N+ + S K+ K++T + + + + E E
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE------ 442
Query: 405 PPPSL-KKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPA------SKVQEH 457
+L + + + D + K +D P S + H
Sbjct: 443 --YALHRSI-----------V---------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 458 M------------RIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDI 505
+ R+ LD R++EQ+ +H + N A G +I +L+QL +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN-----ASG-SILNTLQQLKFYK--- 531
Query: 506 FGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAE-----RRTDI--FGVGDEET 558
I + D + + + AI L ++ E + TD+ + E+
Sbjct: 532 -----------PYICDNDPKYERLV---NAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 559 AI 560
AI
Sbjct: 578 AI 579
Score = 46.4 bits (109), Expect = 4e-05
Identities = 45/370 (12%), Positives = 93/370 (25%), Gaps = 110/370 (29%)
Query: 3 IDVEKPPPG--KDETVSQ--AVVGIIYP--PPEVRNIVDKTANFVARNGPEFESRIRQNE 56
I ++ DE S + P EV + + +A + + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--- 345
Query: 57 IGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTE 116
++H D K+ + L A +K + L
Sbjct: 346 -----------------NWKHVNCD----KLTTIIESSLNVLEPAEYRKMFDRL------ 378
Query: 117 QPFV-PKD---PPKEFEFI-ADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNY 171
V P P I D D++ + + SL++K+ +
Sbjct: 379 --SVFPPSAHIPTILLSLIWFDVIKS-----DVMVVVNKLHKY-------SLVEKQPKES 424
Query: 172 -------QFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYR 224
+ + + +++ Y + D + LD +Y
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIP---------KTFDSDDLIPPYLD--QYF 473
Query: 225 ADYIRYQEAQRKQEEARVEKDRVAYAQIDW------HDFVVVETVDYMPGEPGNFPPPTT 278
+I + + E R+ R+ + + HD N
Sbjct: 474 YSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHD-----------STAWNASGSIL 521
Query: 279 PDEVGARVLMQERM------DNGEE------DLEEDEEMEEEYGQRRPEDDDMQIG-SDE 325
L Q + DN + + + EE D ++I E
Sbjct: 522 NT------LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 326 ENDYYNARMR 335
+ + +
Sbjct: 576 DEAIFEEAHK 585
Score = 40.6 bits (94), Expect = 0.003
Identities = 47/298 (15%), Positives = 92/298 (30%), Gaps = 58/298 (19%)
Query: 652 PDEV-GARVLMQERMDNGEEDLEE--DEEMEEEYG----QRRPEDDDMQIDMEEDSSSEE 704
D V G L + EE +++ +E + Y + E + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 705 EQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVV--KKGYDPKQ------A 756
+ ++ +++P L + ++ L PA + V++ G K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKL--RQALLE--LRPAKN-VLIDGVLGSG-KTWVALDVC 171
Query: 757 RPPVVKPSPTDE-FLISPITGEKIPASKVQEHMR--IGLLDPRWVEQRDKHLNEKINQET 813
V+ + F ++ V E ++ + +DP W + D N K+ +
Sbjct: 172 LSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 814 VYA-----------PEFLL------DPRWVEQ-----------RDKHLNEKIN-QETGLF 844
+ A LL + + R K + + ++ T
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 845 FKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPW 902
D +S+ TP L LK R + L + P L+ + R L W
Sbjct: 290 SLDHHSMTL---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB:
1zkh_A
Length = 115
Score = 50.6 bits (121), Expect = 9e-08
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGGRK 873
G+F KDSNSLAYYN+ G +HL LKER G
Sbjct: 82 GIFIKDSNSLAYYNMASGAVIHLALKERSGPS 113
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Length = 111
Score = 48.7 bits (116), Expect = 4e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
F KD+ SLA+YN+ G + L L+ER G
Sbjct: 78 AGFLKDNMSLAHYNVGAGEILTLSLRERSG 107
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 48.7 bits (116), Expect = 8e-07
Identities = 3/63 (4%), Positives = 9/63 (14%), Gaps = 14/63 (22%)
Query: 826 VEQRDK--HLNEKINQETG-------LFF-----KDSNSLAYYNITPGTKVHLQLKERGG 871
VE+ + + + + + G
Sbjct: 17 VEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPIFVAHTAGR 76
Query: 872 RKK 874
Sbjct: 77 YAN 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-05
Identities = 97/626 (15%), Positives = 177/626 (28%), Gaps = 259/626 (41%)
Query: 170 NYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIR 229
+ + L P + F ++L EQ+ KIL P + F DE ++ A ++ ++
Sbjct: 15 SLEHVLLVP-TASFFIASQLQEQFNKILPEPTE-GFAADDEPTTPAELV------GKFLG 66
Query: 230 YQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQ 289
Y + + + D+V + +F E Y+ G +++ A
Sbjct: 67 YV-SSLVEPSKVGQFDQVLNLCLT--EF---EN-CYLEG-----------NDIHALAA-- 106
Query: 290 ERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRG------------- 336
L ++ + + I + Y AR+
Sbjct: 107 --------KLLQENDTTLVKTKEL-------IKN-----YITARIMAKRPFDKKSNSALF 146
Query: 337 RNANRGRGRM------QEEINE--DDMQE-GTTSEEESDNENEEARKSKEAKDNTQVQDM 387
R G ++ Q ++ +++++ T V D+
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH-------------------VLVGDL 187
Query: 388 EEDSSSEEEQEDIPPPPPPPS-----------LKKVEPAPP---LPSQP-SIQPPPLPPA 432
+ S+E E I L+ P L S P S PL
Sbjct: 188 IK-FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---PL--- 240
Query: 433 PDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYA------ 486
IG++ Q Y
Sbjct: 241 ---------------------------IGVI-----------------QLAHYVVTAKLL 256
Query: 487 ---PGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQL 543
PG+ + + LK + TA+ I E D+ + F +A + L
Sbjct: 257 GFTPGE-LRSYLKGATGHSQGLV------TAVA--IAETDSWES---FFVSVRKA-ITVL 303
Query: 544 AERRTDIFGVGDE------ETAIGKKIGEEDTRKDDKATWDGHTS---SVEAATRAARAN 594
F +G T++ +D +G S S+ T+
Sbjct: 304 -------FFIGVRCYEAYPNTSL-----PPSILEDSLENNEGVPSPMLSISNLTQEQ--- 348
Query: 595 ITLEDQIHQIHKVKGLLPDEEKEKI------------GPKRS-----------HAPNPPL 631
++D +++ + LP ++ +I GP +S AP L
Sbjct: 349 --VQDYVNKTNSH---LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGL 402
Query: 632 PRSMPPMN--KPKPGN-FPPPTTP---DEVGARVLMQERMDNGEEDLEEDEEMEEEYGQR 685
+S P + K K N F P +P L+ D +DL ++ +
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSH------LLVPASDLINKDLVKN---NVSFNA- 452
Query: 686 RPEDDDMQI---------DMEEDSSS 702
D+QI D+ S S
Sbjct: 453 ----KDIQIPVYDTFDGSDLRVLSGS 474
Score = 46.2 bits (109), Expect = 6e-05
Identities = 67/395 (16%), Positives = 126/395 (31%), Gaps = 152/395 (38%)
Query: 3 IDV----EKP--PPGKDETVSQAV----VGII-------------YPPPEVRN------- 32
+++ E P P KD +S + +G+I + P E+R+
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 33 ----IVDKTANFVA--RNGPEFESRIRQN-----EIGNPKFNFLSPGDPYHAYYQHRVKD 81
+V TA +A + F +R+ IG Y +
Sbjct: 273 HSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIG------------VRCYEAYPNTS 318
Query: 82 IREGKVKEA-------PAPAQKALTTATQQKQQELLKQVTTEQP---------------F 119
+ ++++ P+P +++ TQ++ Q+ + + + P
Sbjct: 319 LPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 120 VPKDPPKEFEFIADPP-SISALDLDIVKLTAQFVARNGRGFLTSLMQKE----QRNYQFD 174
V ++ PP S+ L+L + K A + L Q +R +F
Sbjct: 378 V----------VSGPPQSLYGLNLTLRKAKAP----------SGLDQSRIPFSERKLKFS 417
Query: 175 --FLR---PQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIR 229
FL P HS LL + ++ KD++ + V + A I+
Sbjct: 418 NRFLPVASPFHS------HLLVPASDLIN--KDLV-------------KNNVSFNAKDIQ 456
Query: 230 ---YQ----EAQRKQEEARVEK--DRVAYAQIDWHDFVVVET---VDYMPGEPGNFPPPT 277
Y R + E+ D + + W + +D+ PG T
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 278 TP--DEVGARVLMQERMDNGEEDLEEDEEMEEEYG 310
D G RV++ +D +D +YG
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDD---------DYG 542
Score = 41.2 bits (96), Expect = 0.002
Identities = 38/251 (15%), Positives = 80/251 (31%), Gaps = 59/251 (23%)
Query: 58 GNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQ 117
G+ + L P + Q ++E K P P + EL+ +
Sbjct: 14 GSLEHVLLVPTASFFIASQ-----LQEQFNKILPEPTEGFAADDEPTTPAELVGK----- 63
Query: 118 PFVPKDPPKEFEFIA---DPPSISALDLDIVKLT-AQFVARNGRGFLT-----SLMQKEQ 168
F+ +++ +P + D ++ L +F +L +L K
Sbjct: 64 -FL--------GYVSSLVEPSKVGQFD-QVLNLCLTEFE----NCYLEGNDIHALAAKLL 109
Query: 169 RNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFR-LKDESSSMAAI---------- 217
+ ++ + + Y T + +FR + + ++ + AI
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 218 LDEVK-----YR---ADYIRYQEAQRKQEEARVEKD-RVAYAQ----IDW-HDFVVVETV 263
+E++ Y D I+ A+ E R D + Q ++W +
Sbjct: 170 FEELRDLYQTYHVLVGDLIK-FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 264 DYMPGEPGNFP 274
DY+ P + P
Sbjct: 229 DYLLSIPISCP 239
Score = 38.5 bits (89), Expect = 0.014
Identities = 86/518 (16%), Positives = 148/518 (28%), Gaps = 195/518 (37%)
Query: 101 ATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFL 160
A+Q ++Q F P F AD + +L +F+ G++
Sbjct: 30 ASQLQEQ-----------FNKILPEPTEGFAADDEPTTPAEL-----VGKFL-----GYV 68
Query: 161 TSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKD---MMFRL-KDESSSMAA 216
+SL++ + L L ++ LE D + +L ++ +++
Sbjct: 69 SSLVEPSKVGQFDQVL--NLCLTEFENCYLEG--------NDIHALAAKLLQENDTTLVK 118
Query: 217 ILDEVK--YRADYIRYQEAQRKQEEA--RVEKDRVA--YAQIDWHDFVVVETVDYMPGEP 270
+ +K A + + +K A R + A A F G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----F----------GGQ 163
Query: 271 GN----FPPPTTPDEVGA-----RVLMQERMDNGEEDLEE----DEEMEEEYGQ------ 311
GN F +E+ VL+ + + E L E + E+ + Q
Sbjct: 164 GNTDDYF------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 312 ------RRPEDDDM-------------QIGSDEENDYYN-ARMRGRNANRGRGRMQEEIN 351
P+ D + Q+ Y A++ G R ++
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAH-----YVVTAKLLGFTPGELRSYLK---- 268
Query: 352 EDDMQEGTT------------SEEES-DNENEEARK-----------SKEAKDNTQV-QD 386
G T +E +S ++ RK EA NT +
Sbjct: 269 ------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 387 MEEDSSSEEEQEDIPPP------PPPPSL----KKVEPAPPLPSQPSIQPPPLPPAPDKV 436
+ EDS E E +P P + K P Q I L +
Sbjct: 323 ILEDS--LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---SLVNGAKNL 377
Query: 437 VV-----------------KKGYDPKQEKIPAS--KVQEHMR---IG------LLDP--R 466
VV K Q +IP S K++ R + LL P
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 467 WVEQRDKHLNEKINQE----TVYAP--G---QAIEASL 495
+ + N N + VY G + + S+
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Score = 31.6 bits (71), Expect = 1.8
Identities = 14/141 (9%), Positives = 45/141 (31%), Gaps = 40/141 (28%)
Query: 482 ETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLK 541
E V+ G ++ ++ + R++ + + +E A++ ++
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE------------ALQYVVE 1831
Query: 542 QLAERRTDI-----FGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARA--- 593
++ +R + + V +++ G +++ T
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAA-----------------GDLRALDTVTNVLNFIKL 1874
Query: 594 -NITLEDQIHQIH--KVKGLL 611
I + + + +V+G L
Sbjct: 1875 QKIDIIELQKSLSLEEVEGHL 1895
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 41.8 bits (97), Expect = 8e-04
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 682 YGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPA 741
Y +RR D + ++ ++ ++ PPPPP + P S +
Sbjct: 4 YLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVAS 63
Query: 742 P 742
P
Sbjct: 64 P 64
Score = 34.8 bits (79), Expect = 0.13
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 386 DMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 433
++ ++ ++ PPPPP + P S +P
Sbjct: 17 NLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASP 64
Score = 29.8 bits (66), Expect = 3.9
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 382 TQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 433
+ + + PP P A + P P AP
Sbjct: 16 ANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAP 67
Score = 28.7 bits (63), Expect = 9.0
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 386 DMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 433
M + + P + + S + P P+P
Sbjct: 22 YMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 41.9 bits (97), Expect = 0.001
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 1/111 (0%)
Query: 347 QEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPP 406
E+ +G + ++ S E++ +T D + + E +
Sbjct: 10 HHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVA 69
Query: 407 PSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYD-PKQEKIPASKVQE 456
+ + PA + P++ + + P E P S +
Sbjct: 70 TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKET 120
Score = 40.7 bits (94), Expect = 0.003
Identities = 16/170 (9%), Positives = 43/170 (25%), Gaps = 7/170 (4%)
Query: 669 EEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLP 728
E + E+ E E + D + + E + + + PA
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82
Query: 729 SQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFL-ISPITGEKIPASKVQEH 787
+ P++ + + A T+ + E PA++ +
Sbjct: 83 ATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANK- 141
Query: 788 MRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKI 837
+ K+ + + + + + +W +
Sbjct: 142 -----TEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINR 186
Score = 38.4 bits (88), Expect = 0.012
Identities = 13/102 (12%), Positives = 22/102 (21%), Gaps = 1/102 (0%)
Query: 357 EGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAP 416
EN + + A + E S E E E
Sbjct: 4 HHHHHGHHHQLENLYFQGEETAVPENSGAN-TELVSGESEHSTNEADKQNEGEHARENKL 62
Query: 417 PLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHM 458
+ PA ++ + + P K E +
Sbjct: 63 EKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104
Score = 33.4 bits (75), Expect = 0.43
Identities = 9/116 (7%), Positives = 23/116 (19%), Gaps = 6/116 (5%)
Query: 673 EEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPS 732
++E Y Q + +++E + +
Sbjct: 9 GHHHQLENLYFQGEETA----VPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEK 64
Query: 733 IQPPPLPPAPDKVVV--KKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQE 786
+ + +A E + + E P S +
Sbjct: 65 AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKET 120
Score = 32.6 bits (73), Expect = 0.73
Identities = 3/96 (3%), Positives = 18/96 (18%), Gaps = 8/96 (8%)
Query: 361 SEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPS 420
+ + + ++ + +++E + +
Sbjct: 2 AHHHHHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENK 61
Query: 421 QPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQE 456
+ P + ++ E
Sbjct: 62 LEKAEGVATASETAS--------PASNEAATTETAE 89
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPN 886
G +D +L+ YNI + +HL L+ RG PD P
Sbjct: 48 GKQLEDGRTLSDYNIQKESTLHLVLRLRGYADLREDPDRQDHHPG 92
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion
protein; ubiquitin interacting motif, UIM, protein
domain interface; NMR {Saccharomyces cerevisiae}
Length = 114
Score = 37.5 bits (87), Expect = 0.003
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D +L+ YNI + +HL L+ RGG
Sbjct: 56 GKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 39.9 bits (93), Expect = 0.003
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 353 DDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDS-SSEEEQEDIPPPP--PPPSL 409
DD + + E++ E+ + + D Q+++M +++Q PP PPP
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQG 399
Query: 410 KKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDP 444
+ PP P PP P P + +G P
Sbjct: 400 YPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPP 434
Score = 38.8 bits (90), Expect = 0.008
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 343 RGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPP 402
+E +D E ES + A ++ + +Q M++ ++ Q PP
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP 396
Query: 403 PP-PPPSLKKVEPAPPLPSQPSIQPPPLPPAP 433
P PP + PP P PPP AP
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAP 428
Score = 35.3 bits (81), Expect = 0.081
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 662 QERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKV 721
Q E+D + + E+ D E + ++ Q+ PP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 722 EPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTD 767
+ PP P PP P +G P Q PP P D
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPP-QGAPPAAPPQGVD 442
Score = 31.0 bits (70), Expect = 2.1
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 356 QEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPA 415
+ T +++ A +S +A + M+E + ++ + PP
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQG 399
Query: 416 PPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASK 453
P P PP P +GY P + P
Sbjct: 400 YP----PQGYPPQGYPPQGY--PPQGYPPPPQGAPPQG 431
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP:
d.15.1.1 PDB: 1yx6_B
Length = 98
Score = 36.7 bits (85), Expect = 0.004
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKS 875
G +D +L+ YNI + +HL L+ RGGR +
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis,
signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1
PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I*
3dqv_A 1bt0_A
Length = 76
Score = 36.1 bits (84), Expect = 0.004
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 826 VEQRDK--HLNEKINQETG-------LFF-----KDSNSLAYYNITPGTKVHLQLKERGG 871
+E DK + E++ ++ G L + D + A Y I G+ +HL L RGG
Sbjct: 17 IEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 39.6 bits (92), Expect = 0.006
Identities = 43/242 (17%), Positives = 72/242 (29%), Gaps = 43/242 (17%)
Query: 378 AKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVV 437
+KD ++ D S +E+ P P + P+ P A +
Sbjct: 82 SKDAKEIY-YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140
Query: 438 VKKGYDPK---------QEKIPASKVQEHMRIGLLDPRWVEQRDKHLNE---KINQETVY 485
+ + K + I L V + NE + +E
Sbjct: 141 ADEPVKASLLLHVLVAHKLKKSLDSIPMSKTIKDL----VGGKXTVQNEILGDLGKEFGT 196
Query: 486 APGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQ--- 542
P + E L++LAE D F A+GK+ +R PG ++
Sbjct: 197 TPEKPEETPLEELAETFQDTFS-----GALGKQSSSLLSRLISSKMPGGFTITVARKYLQ 251
Query: 543 ----LAERRTD---IFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANI 595
L R D + + +E ++G E D KA D A+ +
Sbjct: 252 TRWGLPSGRQDGVLLVALSNEP---AARLGSEA---DAKAFLDSMAQKY-----ASIVGV 300
Query: 596 TL 597
L
Sbjct: 301 DL 302
Score = 39.2 bits (91), Expect = 0.007
Identities = 10/69 (14%), Positives = 17/69 (24%)
Query: 688 EDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVV 747
D +I D S +E+ P P + P+ P A +
Sbjct: 82 SKDAKEIYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141
Query: 748 KKGYDPKQA 756
+
Sbjct: 142 DEPVKASLL 150
Score = 31.9 bits (72), Expect = 1.4
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 686 RPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLP-PAPDK 744
P+ ++ E P P + A P+ + + P A
Sbjct: 91 TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLL 150
Query: 745 VVV 747
+ V
Sbjct: 151 LHV 153
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL
conjugation pathway, ATP-binding, ligase, nucleotide-
binding, polymorphism; 2.85A {Homo sapiens} SCOP:
k.45.1.1 PDB: 3dbr_I 3dbl_I
Length = 88
Score = 35.8 bits (83), Expect = 0.006
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 826 VEQRD--KHLNEKINQETGL------------FFKDSNSLAYYNITPGTKVHLQLKERGG 871
+E D + + E++ ++ G+ D + A Y I G+ +HL L+ RGG
Sbjct: 29 IEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 38.2 bits (89), Expect = 0.010
Identities = 17/125 (13%), Positives = 28/125 (22%), Gaps = 6/125 (4%)
Query: 624 SHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYG 683
+ +P + P P G E D EE+G
Sbjct: 139 TFVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHG 198
Query: 684 QRRPEDDDMQI-DMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 742
P + + + + Q I + V P S P
Sbjct: 199 VDTPATEFLIAPNRCIVALPRTFQ--IKGDTVGDNYTFVGPTYGDRSHQ---GTWEGPGD 253
Query: 743 DKVVV 747
+ V+
Sbjct: 254 GRPVL 258
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 38.5 bits (90), Expect = 0.010
Identities = 15/167 (8%), Positives = 43/167 (25%), Gaps = 6/167 (3%)
Query: 300 EEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARM------RGRNANRGRGRMQEEINED 353
+ + ++ E + +D+E + N ++ + ++
Sbjct: 4 SDYSDGADDMPDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQGWDNLSLKLALFDN 63
Query: 354 DMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVE 413
+ +T E ++ K ++ + ++ + P P L + E
Sbjct: 64 NFDLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEE 123
Query: 414 PAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRI 460
+ + + V K P H+
Sbjct: 124 SEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSF 170
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon,
inhibitor, ubiqu acetylation, cytoplasm, isopeptide
bond, nucleus; 2.60A {Homo sapiens}
Length = 85
Score = 35.0 bits (81), Expect = 0.010
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 18/76 (23%)
Query: 798 VEQRDK--HLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYN 855
VE D ++ KI + P+ +QR G +D +L+ YN
Sbjct: 20 VEPSDTIENVKAKIQDKEGIPPD--------QQRLIF--------AGKQLEDGRTLSDYN 63
Query: 856 ITPGTKVHLQLKERGG 871
I + ++L LK RGG
Sbjct: 64 IHNHSALYLLLKLRGG 79
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond,
metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B
2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D*
3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A
1nbf_C 1cmx_B 1q5w_B ...
Length = 76
Score = 35.0 bits (81), Expect = 0.010
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 18/76 (23%)
Query: 798 VEQRD--KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYN 855
VE D +++ KI + P+ +QR G +D +L+ YN
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPD--------QQRLIF--------AGKQLEDGRTLSDYN 60
Query: 856 ITPGTKVHLQLKERGG 871
I + +HL L+ RGG
Sbjct: 61 IQRESTLHLVLRLRGG 76
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati
bacterial effector, cell cycle-protein binding complex;
1.60A {Homo sapiens} PDB: 4f8c_B
Length = 88
Score = 35.0 bits (81), Expect = 0.011
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 826 VEQRDK--HLNEKINQETG-------LFF-----KDSNSLAYYNITPGTKVHLQLKERGG 871
+E DK + E++ ++ G L + D + A Y I G+ +HL L RGG
Sbjct: 17 IEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76
Query: 872 RKK 874
Sbjct: 77 GGL 79
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 37.7 bits (86), Expect = 0.020
Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 8/214 (3%)
Query: 614 EEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNGEEDLE 673
++GP P + PP P G PP + ++ E +
Sbjct: 45 SGPAEVGPGAVGERTPR--KKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIA 102
Query: 674 EDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSI 733
E E ++R + + ++D + SE+E +K P PP + P
Sbjct: 103 ETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEE 162
Query: 734 QPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLL 793
+ P P V Q+R P + + + I KV +R L
Sbjct: 163 ENESEPEEPSGVEGA----AFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTL 218
Query: 794 DPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVE 827
W++ L + + + AP + D V
Sbjct: 219 -QLWLDNPKIQLTFEATLQQLEAP-YNSDTVLVH 250
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 37.6 bits (87), Expect = 0.024
Identities = 10/69 (14%), Positives = 17/69 (24%)
Query: 688 EDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVV 747
D +I + + +E + + PA P + P P P V
Sbjct: 82 CKDAKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141
Query: 748 KKGYDPKQA 756
Sbjct: 142 DAPVTATDV 150
Score = 34.9 bits (80), Expect = 0.16
Identities = 42/242 (17%), Positives = 74/242 (30%), Gaps = 43/242 (17%)
Query: 378 AKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVV 437
KD ++ + + +E + + PA P + P P P V
Sbjct: 82 CKDAKEIY-YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140
Query: 438 VKKGYDPK---------QEKIPASKVQEHMRIGLLDPRWVEQRDKHLNE---KINQETVY 485
+ K +++ I L V + NE + +E
Sbjct: 141 QDAPVTATDVIRALVAQKLKKELTEIPPSKAIKDL----VGGKSTLQNEILGDLGKEFGS 196
Query: 486 APGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQ--- 542
P + + L +L F +GK+ R PG ++++
Sbjct: 197 TPEKPEDTPLDELGASMQATFD-----GQLGKQSSSLIARFVSSKMPGGFNITAVRKYLE 251
Query: 543 ----LAERRTD---IFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANI 595
L R D +F + E + ++G E D KA +D + A+ A I
Sbjct: 252 TRWGLGPGRQDGVLLFAITAEPPS---RLGSEA---DAKAYFDNLANKY-----ASYAGI 300
Query: 596 TL 597
TL
Sbjct: 301 TL 302
Score = 29.9 bits (67), Expect = 5.1
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 686 RPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLP-PAPDK 744
E + + + ++S + P P + P + P+ P A D
Sbjct: 91 DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150
Query: 745 VVV 747
+
Sbjct: 151 IRA 153
Score = 29.5 bits (66), Expect = 6.2
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 688 EDDDMQIDMEEDSSSEEEQEDIPP-PPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVV 746
+ + ++ + E ++ + P P P+ PAP S P P V
Sbjct: 91 DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150
Query: 747 VK 748
++
Sbjct: 151 IR 152
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure,
northeast structural genomics consortium, protein
structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 34.3 bits (79), Expect = 0.025
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D L Y + P + V + L+ RGG
Sbjct: 51 GKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural
protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Length = 88
Score = 33.9 bits (78), Expect = 0.027
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D +L+ YNI + +HL L+ RGG
Sbjct: 56 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific
protease activity, hydrolase, ubiquitin B structural
genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 85
Score = 33.9 bits (78), Expect = 0.028
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D +L+ YNI + + L L+ RGG
Sbjct: 50 GKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 36.2 bits (82), Expect = 0.041
Identities = 18/105 (17%), Positives = 33/105 (31%)
Query: 627 PNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRR 686
P PPLP P +P P P++ V+ Q M + +E + + G
Sbjct: 10 PKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGIPA 69
Query: 687 PEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQP 731
E + + + + + P+ +QP
Sbjct: 70 AEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQP 114
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 33.5 bits (77), Expect = 0.042
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 18/76 (23%)
Query: 798 VEQRDK--HLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYN 855
V ++ L E++ PE QR + G ++ +L Y+
Sbjct: 26 VSRKATIEELRERVWALFDVRPE--------CQRLFY--------RGKQLENGYTLFDYD 69
Query: 856 ITPGTKVHLQLKERGG 871
+ + L ++ G
Sbjct: 70 VGLNDIIQLLVRPDSG 85
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 36.3 bits (84), Expect = 0.044
Identities = 17/165 (10%), Positives = 47/165 (28%), Gaps = 3/165 (1%)
Query: 315 EDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARK 374
+ D + G +E + R A + I+E ++ + ++
Sbjct: 15 YELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLL 74
Query: 375 SKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 434
K + + DS E++Q E + + + + +
Sbjct: 75 QKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTN 134
Query: 435 KVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDK---HLN 476
V K + K+++ L+ + ++ ++
Sbjct: 135 GEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVVH 179
Score = 34.7 bits (80), Expect = 0.15
Identities = 21/150 (14%), Positives = 44/150 (29%)
Query: 669 EEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLP 728
+E+ E+E EE+ + R ++ + SE+E D K V
Sbjct: 18 DEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLLQKA 77
Query: 729 SQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHM 788
S + K + A ++ + PA + +
Sbjct: 78 SSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTNGEV 137
Query: 789 RIGLLDPRWVEQRDKHLNEKINQETVYAPE 818
++ + K + ++ + V PE
Sbjct: 138 KMKNSSESDNQPEKKKIKKQNPTDLVSVPE 167
Score = 29.3 bits (66), Expect = 7.1
Identities = 16/163 (9%), Positives = 43/163 (26%), Gaps = 13/163 (7%)
Query: 348 EEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDME------------EDSSSEE 395
+ +++ E +EE+ + +E + + E E S +
Sbjct: 14 DYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYL 73
Query: 396 EQEDIPPPPPPPSLK-KVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKV 454
Q+ + P + K + PA +
Sbjct: 74 LQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQT 133
Query: 455 QEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQ 497
+++ + K + ++ + V P +++ K
Sbjct: 134 NGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKP 176
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 36.4 bits (83), Expect = 0.044
Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Query: 667 NGEEDLEEDEEMEEEYGQRRPEDDDM--QIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPA 724
+ ++ + D ++ + + + +D Q ++ + + + +PP PP P
Sbjct: 11 SSKQHGKRDSKITDHFVRIPKSEDKRKEQCEVRHQRAERKIPKYVPPNLPPDKKWLGTPI 70
Query: 725 PPLPSQP--SIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSP 765
+ P ++ P L P+ V + + P P+
Sbjct: 71 EEMRKMPRCGVRLPLLRPSASHTVTVRVDLLRAGEVPKPFPTH 113
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 36.4 bits (84), Expect = 0.047
Identities = 36/271 (13%), Positives = 74/271 (27%), Gaps = 100/271 (36%)
Query: 301 EDEEMEEEYGQR-------RPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINED 353
+D++++ +Y R + ++ G + E + +QE I E+
Sbjct: 886 DDKDVKAKYETSILEHSGIRLIEPELFNGYNPEK---------------KEMIQEVIVEE 930
Query: 354 DMQEGTTSEEESDNENEEARKSKEA-KDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKV 412
D++ S+E A + K D + ++ E +
Sbjct: 931 DLEPFEASKET-------AEQFKHQHGDKVDIFEIPETGEYSVK---------------- 967
Query: 413 EPAPPLPSQPSIQPPPLPPAPDKV--VVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQ 470
L ++ P V + G++ K I + + DP
Sbjct: 968 -----LLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISD-DIISQV-----DPI---- 1012
Query: 471 RDKHLNEKINQETVYAPGQAIEA------SLKQLAERRTDIFGVGDEETAIGKKIGEEDT 524
T++ +EA + + + VG G +G
Sbjct: 1013 ------------TLFVLVSVVEAFIASGITDPYEMYKYVHVSEVG---NCSGSGMG---- 1053
Query: 525 RKDDKLFPG-QAIEASLKQLAE---RRTDIF 551
G A+ K + + DI
Sbjct: 1054 --------GVSALRGMFKDRFKDEPVQNDIL 1076
Score = 36.4 bits (84), Expect = 0.060
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 344 GRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPP 403
G +Q +++E T + E E RK+ + + + +S++
Sbjct: 729 GGLQFV---PELKEFTAKLRKELVETSEVRKA-VSIETALEHKVVNGNSADAA---YAQV 781
Query: 404 PPPPSLKKVEPAPPLPSQPSIQPPPLPPA-----PDKVVVKKGY 442
P P L ++ ++V+V G+
Sbjct: 782 EIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGF 825
Score = 33.3 bits (76), Expect = 0.46
Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 661 MQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKK 720
+Q + E + +E+ E R+ + ++ + + + + P + +
Sbjct: 731 LQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQ 790
Query: 721 VEPAPPLPSQPSIQPPPLPPA-----PDKVVVKKGY 751
++ P L ++ ++V+V G+
Sbjct: 791 LDF-PELKPYKQVKQIAPAELEGLLDLERVIVVTGF 825
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 35.1 bits (80), Expect = 0.074
Identities = 14/82 (17%), Positives = 26/82 (31%)
Query: 701 SSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPV 760
+ + + PPP + + EP P +P + P + P K K+ +
Sbjct: 41 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100
Query: 761 VKPSPTDEFLISPITGEKIPAS 782
+ E + PA
Sbjct: 101 KRDVKPVESRPASPFENTAPAR 122
Score = 33.1 bits (75), Expect = 0.31
Identities = 16/89 (17%), Positives = 27/89 (30%)
Query: 694 IDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDP 753
+ + + Q P P + P PP + I+ P P P VKK +
Sbjct: 40 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 99
Query: 754 KQARPPVVKPSPTDEFLISPITGEKIPAS 782
+ V+ P F + +
Sbjct: 100 PKRDVKPVESRPASPFENTAPARLTSSTA 128
Score = 31.6 bits (71), Expect = 0.78
Identities = 16/80 (20%), Positives = 24/80 (30%)
Query: 702 SEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVV 761
E E E P P PP V P +P +P K VK +
Sbjct: 59 VEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENT 118
Query: 762 KPSPTDEFLISPITGEKIPA 781
P+ + T + + +
Sbjct: 119 APARLTSSTATAATSKPVTS 138
Score = 31.2 bits (70), Expect = 1.1
Identities = 18/56 (32%), Positives = 22/56 (39%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSP 765
P P P S+ V PA P Q PP P+ PK+A + KP P
Sbjct: 29 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 84
Score = 30.8 bits (69), Expect = 1.7
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 394 EEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASK 453
E P P P P + + AP + +P +P P P KV + D K + +
Sbjct: 54 PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 113
Query: 454 VQE 456
E
Sbjct: 114 PFE 116
Score = 30.8 bits (69), Expect = 1.8
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 696 MEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQ 755
+E + ++ + P + V+P P +P +P P+P P + V +
Sbjct: 26 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 85
Query: 756 ARPPVVKPSPTDE 768
+P E
Sbjct: 86 PKPKPKPVKKVQE 98
Score = 30.5 bits (68), Expect = 1.8
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 687 PEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVV 746
P D + ++ E E P P P P K P +P +P P P +
Sbjct: 42 PADLEPPQAVQPPPEPVVEPEPEPEPIPEP--PKEAPVVIEKPKPKPKPKPKPVKKVQEQ 99
Query: 747 VKKGYDPKQARPPVVKPSP 765
K+ P ++RP +
Sbjct: 100 PKRDVKPVESRPASPFENT 118
Score = 30.5 bits (68), Expect = 1.8
Identities = 17/74 (22%), Positives = 28/74 (37%)
Query: 383 QVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGY 442
QV ++ + P PP + P P + +P +P P PP VV++K
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Query: 443 DPKQEKIPASKVQE 456
+ K K +
Sbjct: 84 PKPKPKPKPVKKVQ 97
Score = 30.5 bits (68), Expect = 2.0
Identities = 11/83 (13%), Positives = 20/83 (24%)
Query: 703 EEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVK 762
E P K +P P + QP + + AR
Sbjct: 68 IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSST 127
Query: 763 PSPTDEFLISPITGEKIPASKVQ 785
+ ++ + S+ Q
Sbjct: 128 ATAATSKPVTSVASGPRALSRNQ 150
Score = 30.5 bits (68), Expect = 2.1
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 392 SSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPA 451
+ + + PPP + + EP P +P + P + P K K+ +
Sbjct: 41 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100
Query: 452 SKVQE 456
+ +
Sbjct: 101 KRDVK 105
Score = 30.5 bits (68), Expect = 2.3
Identities = 10/87 (11%), Positives = 23/87 (26%)
Query: 696 MEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQ 755
+ + + P P P + + P+ + P P P K V ++ +
Sbjct: 46 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK 105
Query: 756 ARPPVVKPSPTDEFLISPITGEKIPAS 782
+ + A+
Sbjct: 106 PVESRPASPFENTAPARLTSSTATAAT 132
Score = 30.1 bits (67), Expect = 2.5
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 384 VQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVV 437
VQ E E + + P PP + +E P P + P + V
Sbjct: 51 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 104
Score = 29.7 bits (66), Expect = 3.3
Identities = 14/73 (19%), Positives = 20/73 (27%)
Query: 702 SEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVV 761
E+ P P P +KKV+ P +P P P A V
Sbjct: 77 VVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPV 136
Query: 762 KPSPTDEFLISPI 774
+ +S
Sbjct: 137 TSVASGPRALSRN 149
Score = 29.3 bits (65), Expect = 5.4
Identities = 13/70 (18%), Positives = 23/70 (32%)
Query: 387 MEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQ 446
+ + Q P P + P PP + I+ P P P VKK + +
Sbjct: 42 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 101
Query: 447 EKIPASKVQE 456
+ + +
Sbjct: 102 RDVKPVESRP 111
Score = 28.9 bits (64), Expect = 6.4
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 394 EEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPAS 452
E E PP P ++K +P P +P + P K V + P + PA
Sbjct: 64 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR 122
Score = 28.9 bits (64), Expect = 7.0
Identities = 12/73 (16%), Positives = 19/73 (26%)
Query: 384 VQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYD 443
Q + + + E PPP P P + P+ K K
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Query: 444 PKQEKIPASKVQE 456
P ++ K
Sbjct: 92 PVKKVQEQPKRDV 104
Score = 28.5 bits (63), Expect = 8.0
Identities = 14/65 (21%), Positives = 24/65 (36%)
Query: 391 SSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIP 450
+ ++ E PPP P ++ P+P P P + K K K ++ P
Sbjct: 41 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100
Query: 451 ASKVQ 455
V+
Sbjct: 101 KRDVK 105
Score = 28.5 bits (63), Expect = 8.6
Identities = 11/77 (14%), Positives = 21/77 (27%)
Query: 394 EEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASK 453
+E + P P K +P + QP P+ P +
Sbjct: 72 PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131
Query: 454 VQEHMRIGLLDPRWVEQ 470
+ + PR + +
Sbjct: 132 TSKPVTSVASGPRALSR 148
Score = 28.5 bits (63), Expect = 9.2
Identities = 10/61 (16%), Positives = 19/61 (31%)
Query: 394 EEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASK 453
E + PP P + + P P ++ P D V+ E ++
Sbjct: 63 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR 122
Query: 454 V 454
+
Sbjct: 123 L 123
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 35.0 bits (80), Expect = 0.076
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 622 KRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQER--MDNGEEDLEEDEEME 679
K NP L PP++KP G PP+ V + R + EE E EE +
Sbjct: 18 KLPQNLNPLLLNV-PPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQ 76
Query: 680 EEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPS 717
Q+ D + D + E DI P
Sbjct: 77 RPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKK 114
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein
binding; 2.60A {Homo sapiens}
Length = 111
Score = 32.9 bits (75), Expect = 0.11
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D +L+ YNI + +HL L+ RGG
Sbjct: 82 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation,
antiviral protein-viral P complex; 2.01A {Homo sapiens}
PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Length = 159
Score = 33.0 bits (75), Expect = 0.17
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 16/68 (23%)
Query: 804 HLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVH 863
HL ++++ + G +D L Y + P + V
Sbjct: 106 HLKQQVSGLEGVQDD--------LFWLTF--------EGKPLEDQLPLGEYGLKPLSTVF 149
Query: 864 LQLKERGG 871
+ L+ RGG
Sbjct: 150 MNLRLRGG 157
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 31.6 bits (72), Expect = 0.21
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D L Y I + L K+ G
Sbjct: 54 GQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling
protein-metal binding protein COM; HET: TRE; 1.70A {Homo
sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A
2y5b_B
Length = 152
Score = 32.7 bits (74), Expect = 0.24
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D +L+ YNI + +HL L+ RGG
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.24
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 26/95 (27%)
Query: 456 EHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAI 515
E +R +W E++ K L E + +E ++ A++ + + E +
Sbjct: 85 ESIR------KWREEQRKRLQELDAAS------KVMEQEWREKAKKDLEEWNQRQSEQ-V 131
Query: 516 GKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDI 550
K + R DK F + DI
Sbjct: 132 EKNK--INNRIADKAF-----------YQQPDADI 153
Score = 29.7 bits (66), Expect = 3.1
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 786 EHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNE 835
E +R +W E++ K L E V E W E+ K L E
Sbjct: 85 ESIR------KWREEQRKRLQELDAASKVMEQE------WREKAKKDLEE 122
Score = 28.2 bits (62), Expect = 9.0
Identities = 6/54 (11%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 296 EEDLEEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEE 349
EE + +E++ + E + + + ++ + N+ R+ ++
Sbjct: 92 EEQRKRLQELDAA--SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Length = 172
Score = 32.7 bits (74), Expect = 0.25
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D +L+ YNI + +HL L+ RGG
Sbjct: 143 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase,
DE-isgylase, hydrolase-protein complex; 1.60A {Homo
sapiens}
Length = 79
Score = 31.2 bits (71), Expect = 0.26
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERG 870
G +D L Y + P + V + L+ RG
Sbjct: 51 GKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 31.3 bits (71), Expect = 0.29
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 826 VEQRD--KHLNEKINQETG-------LFF-----KDSNSLAYYNITPGTKVHLQLKERGG 871
V ++ + + G + +D +L + T + + + GG
Sbjct: 34 VTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP,
oligomerization, ubiquitin insertion, hydrolase binding;
2.17A {Bacillus amyloliquefaciens}
Length = 189
Score = 32.7 bits (74), Expect = 0.32
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 23/131 (17%)
Query: 748 KKGYDPKQARPPVVKPSPTDEFLI--SPITGEKIPASKVQEHMRIGLLDPRW---VEQRD 802
K G ++A + ++ S K + L VE D
Sbjct: 67 KSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSD 126
Query: 803 --KHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGT 860
+++ KI + P D + + K L +D +L+ YNI +
Sbjct: 127 TIENVKAKIQDKEGIPP----DQQRLIFAGKQL------------EDGRTLSDYNIQKES 170
Query: 861 KVHLQLKERGG 871
+HL L+ RGG
Sbjct: 171 TLHLVLRLRGG 181
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 32.9 bits (76), Expect = 0.36
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPS 764
P PP P P P S + P LP AP + +A P +
Sbjct: 2 PQLPPAPDDY---PTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPAD 53
Score = 31.8 bits (73), Expect = 0.78
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 401 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQ---EKIPASKVQEH 457
P PP P P P S + P LP AP + + +IPA ++ H
Sbjct: 2 PQLPPAPDDY---PTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNH 58
Query: 458 MRI-----GLLDPRWVEQR 471
+ I G RW QR
Sbjct: 59 VAIVMDGNG----RWATQR 73
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 96
Score = 30.8 bits (70), Expect = 0.41
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 846 KDSNSLAYYNITPGTKVHLQLKERGG 871
+D + L+ I G+ VH+ ++ G
Sbjct: 67 RDQDILSQRGILDGSTVHVVVRSHSG 92
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 32.7 bits (74), Expect = 0.42
Identities = 13/59 (22%), Positives = 20/59 (33%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDE 768
P P + PAPP + Q L A + ++ K+A+ K P
Sbjct: 16 PAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKP 74
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 32.5 bits (73), Expect = 0.49
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 3/94 (3%)
Query: 684 QRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 743
R +Q S+ Q P P P + + P +P P
Sbjct: 34 ARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKK 93
Query: 744 KVVVKKGYDPKQARPPVVKPSPTDEFLISPITGE 777
+ K P + + +K F + G+
Sbjct: 94 QPAKTK---PGKRQRMALKLEADRLFDVKNEDGD 124
Score = 28.6 bits (63), Expect = 8.7
Identities = 11/65 (16%), Positives = 18/65 (27%)
Query: 383 QVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGY 442
Q+Q + S+ + P P P + P + P K K
Sbjct: 41 QIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKP 100
Query: 443 DPKQE 447
+Q
Sbjct: 101 GKRQR 105
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 32.4 bits (73), Expect = 0.53
Identities = 12/74 (16%), Positives = 23/74 (31%)
Query: 664 RMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEP 723
+M + + M + + R PE+ Q + E + + P E
Sbjct: 188 QMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEW 247
Query: 724 APPLPSQPSIQPPP 737
+QP+ P
Sbjct: 248 GTDAAAQPAAIPAQ 261
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 32.8 bits (75), Expect = 0.54
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 393 SEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKI 449
S + + P P P P+ P P LP P+ PPP P + VK G K+ I
Sbjct: 3 SNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAI 59
Score = 30.9 bits (70), Expect = 1.8
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 702 SEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQ 755
S + + P P P P+ P P LP P+ PPP P + VK G K+
Sbjct: 3 SNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKK 56
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 81
Score = 30.0 bits (68), Expect = 0.57
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 826 VEQRDK--HLNEKINQETG-------LFF-----KDSNSLAYYNITPGTKVHLQLK 867
V + + L + ++++ L F D L+ Y+I P +K++L +K
Sbjct: 24 VPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 32.7 bits (75), Expect = 0.69
Identities = 26/250 (10%), Positives = 70/250 (28%), Gaps = 38/250 (15%)
Query: 149 AQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLK 208
+ V ++ Q + TKL + K
Sbjct: 798 IESVQSFMNAHKEYKKTEKPPKGQE-VSELEAIYNSLQTKL--RLIKREPFVAPAGLTPN 854
Query: 209 DESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPG 268
+ S+ +A+ + A+ +R + ++K+ ++K +++
Sbjct: 855 EIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLE--------------- 899
Query: 269 EPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEE-EYGQRRPEDDDMQIGSDEEN 327
+ + + + G+ +++ E + + Q SD +
Sbjct: 900 -----------NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLS 948
Query: 328 DYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDM 387
A++ N N + E + Q+ T + ++ E ++Q +
Sbjct: 949 I--LAQLTELNYNGVP-ELTERKDTFFAQQWTGVKSSAETYKNTLLAELE-----RLQKI 1000
Query: 388 EEDSSSEEEQ 397
E+
Sbjct: 1001 EDLHHHHHHH 1010
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein;
ubiquitin-like domain, solution structure, signaling
protein; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 30.5 bits (69), Expect = 0.71
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 12/49 (24%)
Query: 835 EKINQETG-------LFF-----KDSNSLAYYNITPGTKVHLQLKERGG 871
+++ G FF D I V + + +
Sbjct: 51 RRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 32.2 bits (74), Expect = 0.76
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 396 EQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 434
E++ I P + ++ P+P + + + PP P +
Sbjct: 165 EKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQIN 203
Score = 32.2 bits (74), Expect = 0.76
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 705 EQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 743
E++ I P + ++ P+P + + + PP P +
Sbjct: 165 EKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQIN 203
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 31.6 bits (72), Expect = 1.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 661 MQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEE 704
+ E D E EE+E+ EEE + PE + + + E+ ++E
Sbjct: 337 LDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate
metabolism, kinase, membrane, nucleotide-binding,
nucleus; 2.60A {Saccharomyces cerevisiae} SCOP:
b.1.18.21 d.353.1.1
Length = 252
Score = 31.5 bits (70), Expect = 1.1
Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 13/153 (8%)
Query: 619 IGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEM 678
I ++ + +P + ++G + +G ED
Sbjct: 83 IEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKD---PDDFGDGYTRFHEDLSP 139
Query: 679 EEE--YGQRRPEDDDMQIDMEEDSSSEEEQEDIPPP--PPPPSLKKVEPAPPL------P 728
Y P ME + + Q+ PP L L
Sbjct: 140 RPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQ 199
Query: 729 SQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVV 761
Q + P P+ VV+ +
Sbjct: 200 DQFNENNSGALPIPNHVVLNHLVTSSIKHNTLC 232
Score = 28.8 bits (63), Expect = 7.9
Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 4/129 (3%)
Query: 316 DDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKS 375
D + +D+ ++ N + D M+ T+ + +
Sbjct: 66 SDFLPTATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDD 125
Query: 376 KEAKDNTQVQDMEEDSSSEEEQE----DIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPP 431
+D+ E + P ++ + PP LPP
Sbjct: 126 FGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPP 185
Query: 432 APDKVVVKK 440
+ V++ K
Sbjct: 186 QLENVILNK 194
Score = 28.5 bits (62), Expect = 8.5
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 3/124 (2%)
Query: 313 RPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEA 372
+ +++ MR ++R +Q + DD +G T E +
Sbjct: 84 EVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPL 143
Query: 373 RKSKEAKDNTQVQDMEEDSSSEEEQEDIPPP---PPPPSLKKVEPAPPLPSQPSIQPPPL 429
+ + + E +++ PP L L + Q
Sbjct: 144 EYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFN 203
Query: 430 PPAP 433
Sbjct: 204 ENNS 207
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 31.6 bits (72), Expect = 1.2
Identities = 12/65 (18%), Positives = 19/65 (29%)
Query: 371 EARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLP 430
R+ + ++ E + E+E PPP P P P Q P
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFV 62
Query: 431 PAPDK 435
+
Sbjct: 63 DTAVE 67
Score = 31.2 bits (71), Expect = 2.0
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 388 EEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQE 447
+ S +E+ + + E PP P I PPP P AP+
Sbjct: 5 RREQSKAKERLLEREEALAKHMSEREKRPP----PKIDPPPSPKAPEPSKRVLKEKQAPL 60
Query: 448 KIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLK 496
+ + + LLDP + + + E++ A + +E LK
Sbjct: 61 FVDTAVEGTLPPLSLLDP------AEVKQKSYSPESLEAMSRLLEIKLK 103
Score = 30.4 bits (69), Expect = 3.4
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 678 MEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPP 737
M + ++ + + E + E+E PPP P P P Q P
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPL 60
Query: 738 LPPAPDK 744
+
Sbjct: 61 FVDTAVE 67
Score = 30.0 bits (68), Expect = 4.4
Identities = 13/76 (17%), Positives = 23/76 (30%)
Query: 662 QERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKV 721
+ +E L E EE ++ R + +ID + E + + P
Sbjct: 5 RREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDT 64
Query: 722 EPAPPLPSQPSIQPPP 737
LP + P
Sbjct: 65 AVEGTLPPLSLLDPAE 80
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 31.0 bits (70), Expect = 1.3
Identities = 10/68 (14%), Positives = 27/68 (39%)
Query: 332 ARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDS 391
M R RG + ++ + M + + E +EA + + A+ + ++
Sbjct: 171 YWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEG 230
Query: 392 SSEEEQED 399
+E+ ++
Sbjct: 231 EAEQNTDN 238
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 31.3 bits (70), Expect = 1.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 401 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPA 432
P P P + +P P P PS + P PP
Sbjct: 315 PTAPTQPMYETEKPLEPAPVAPSYENEPTPPV 346
Score = 31.3 bits (70), Expect = 1.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPA 741
P P P + +P P P PS + P PP
Sbjct: 315 PTAPTQPMYETEKPLEPAPVAPSYENEPTPPV 346
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 31.3 bits (70), Expect = 1.5
Identities = 10/57 (17%), Positives = 14/57 (24%), Gaps = 5/57 (8%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPT 766
L + P +P PPP PA + + PT
Sbjct: 28 VTSAASDFLAALHPPVTVPDPA--PPPPPAPAAGN---PPDTVTGDSVLQRILRGPT 79
Score = 30.5 bits (68), Expect = 2.4
Identities = 23/125 (18%), Positives = 32/125 (25%), Gaps = 11/125 (8%)
Query: 711 PPPPPPSLKKVEPAPPLPSQP-SIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEF 769
PP P PAPP P P + PP + P +P +
Sbjct: 41 PPVTVPD-----PAPPPPPAPAAGNPPDTVTGDSVLQRIL---RGPTGPGTTSLAPAVRY 92
Query: 770 LISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLL--DPRWVE 827
P A GL E + E + +A + + W
Sbjct: 93 GRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIKRWAEDEVQLYPEEWEG 152
Query: 828 QRDKH 832
Q D
Sbjct: 153 QFDGF 157
Score = 29.3 bits (65), Expect = 6.0
Identities = 9/57 (15%), Positives = 12/57 (21%), Gaps = 2/57 (3%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPT 766
S + P PS + P A PP P+
Sbjct: 5 HHHHHHSS--GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 31.2 bits (71), Expect = 1.5
Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 662 QERMDNGEEDLE-EDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIP 710
QE +D ++++ +D+E E++ DD+ +++ +++ DI
Sbjct: 237 QEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDIH 286
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 31.4 bits (71), Expect = 1.7
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 347 QEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPP 406
++++ ++ ++ K T+ ++ + + +
Sbjct: 685 DNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKLPKIADGDTSDDEEQE 744
Query: 407 PSLKKVEPAPPLPSQPSIQPPPLPPAPDK---VVVKK 440
PAPP P PS P + V V+
Sbjct: 745 DE----APAPPKPKPPSTPNPCVRKDQSGTHIVSVED 777
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 31.0 bits (68), Expect = 1.9
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 401 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVV 438
P P P+ + +P P P P+ + P PP +
Sbjct: 457 PTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494
Score = 31.0 bits (68), Expect = 1.9
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVV 747
P P P+ + +P P P P+ + P PP +
Sbjct: 457 PTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105;
ubiquitin-like protein, NESG, leucine-rich repeat,
structural genomics; NMR {Arabidopsis thaliana}
Length = 85
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 833 LNEKINQETG-------LFFK-----DSNSLAYYNITPGTKVHL 864
L ++ T L FK ++++L ++ G K+ L
Sbjct: 37 LKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLML 80
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein;
1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Length = 76
Score = 28.4 bits (64), Expect = 2.3
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 846 KDSNSLAYYNITPGTKVHLQLKERG 870
+ ++ ++ + VH+ + R
Sbjct: 51 PNHLTVQNCDLEQQSIVHIVQRPRR 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.7
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 469 EQRDKHLNEKINQETVYAPGQA----IEASLK 496
+Q K L + +YA A I+A+++
Sbjct: 19 KQALKKLQASLK---LYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 4.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 511 EETAIGKKIGEEDTRK---DDKLFPGQAIEASLK 541
E+ A+ KK+ + + K DD P AI+A+++
Sbjct: 18 EKQAL-KKL--QASLKLYADDSA-PALAIKATME 47
Score = 28.8 bits (63), Expect = 4.7
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 19/40 (47%)
Query: 395 EEQEDIPPPPPPPSLKKVE-------P--APPLPSQPSIQ 425
E+Q +LKK++ AP L + +++
Sbjct: 18 EKQ----------ALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 4.7
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 19/40 (47%)
Query: 704 EEQEDIPPPPPPPSLKKVE-------P--APPLPSQPSIQ 734
E+Q +LKK++ AP L + +++
Sbjct: 18 EKQ----------ALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 9.4
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 104 QKQQELLKQVTTE-QPFVPKDPP 125
+KQ LK++ + + P
Sbjct: 18 EKQA--LKKLQASLKLYADDSAP 38
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.0 bits (70), Expect = 2.7
Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 296 EEDLEEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDM 355
E + E++ + ++ E ++E N NA + ++ I D+
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKN------NALKKIRELESHI--SDL 1128
Query: 356 QEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDI 400
QE SE+ + N+ E+ ++ + ++E+ + Q+++
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Score = 30.6 bits (69), Expect = 3.2
Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 49/254 (19%)
Query: 149 AQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLK 208
+ N R F+ ++ + L T+ E+ + + R K
Sbjct: 821 IFCIQYNVRSFM------NVXHWPWMXLFFXIXPLLKVTRQEEEMQAK----DEELQRTK 870
Query: 209 DESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPG 268
+ A L E++ + + +E QE+ + E + A A+
Sbjct: 871 ERQQKAEAELKELEQKHTQLC-EEKNLLQEKLQAETELYAEAE----------------- 912
Query: 269 EPGNFPPPTTPDEVGARVLMQER-MDNGEEDLEED-EEMEEEYGQRRPEDDDMQIGSDEE 326
E+ R+ +++ ++ ++E EE EE Q + E M +
Sbjct: 913 ------------EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM------Q 954
Query: 327 NDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKD-NTQVQ 385
+ + R ++Q E D + ++ E++ + +KE K +V
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Query: 386 DMEEDSSSEEEQED 399
D+ + + EEE+
Sbjct: 1015 DLTTNLAEEEEKAK 1028
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 30.6 bits (68), Expect = 2.8
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 401 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 433
PP PS+ + + P Q Q +
Sbjct: 48 PPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Score = 30.6 bits (68), Expect = 2.8
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 742
PP PS+ + + P Q Q +
Sbjct: 48 PPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
Query: 662 QERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKV 721
++R ++ + EE +Y + + + +Q + + E I +LK+
Sbjct: 564 EKRFFEKFPEVNKLEEFTNKY--KVLDVNYLQRLELDYMVRDVMPEAIALDRGSNNLKRT 621
Query: 722 EPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQA--RPPVVKPSPTDEFL 770
P P ++V PK+ + + + EFL
Sbjct: 622 MREEEDGQAFKKFKANEDPIPPEIVELLKVLPKRQYFKVTIFEAHAFSEFL 672
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 30.1 bits (68), Expect = 3.6
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 8/115 (6%)
Query: 701 SSEEEQEDIPPPPPPPSLKKVEPAPP-LPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPP 759
S E+ P + +P L + P P P K
Sbjct: 2 SQHNEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTR 61
Query: 760 VVKPSPTDEFLISPI-----TGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKI 809
K + ++ T + + + Q +R G P +E D L EKI
Sbjct: 62 NEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLLE--DFILREKI 114
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.2 bits (67), Expect = 4.0
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 694 IDMEEDSSSEEEQE---------DIPPPPPPPSLKKVEPAPPLPSQPSI 733
+ + D +E D+ P P P P QPS+
Sbjct: 913 VVVLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPSALQPSL 961
Score = 29.8 bits (66), Expect = 5.5
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 9/47 (19%)
Query: 387 MEEDSSSEEEQE---------DIPPPPPPPSLKKVEPAPPLPSQPSI 424
+ D +E D+ P P P P QPS+
Sbjct: 915 VLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPSALQPSL 961
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 29.3 bits (66), Expect = 4.8
Identities = 11/82 (13%), Positives = 23/82 (28%)
Query: 643 PGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSS 702
P P+ VL E + ++ ++ + +E D+S
Sbjct: 155 PEGCTLAADPELTVVSVLPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASL 214
Query: 703 EEEQEDIPPPPPPPSLKKVEPA 724
EE + + + A
Sbjct: 215 EEVKAEASEDNAGTDSEDNSDA 236
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 29.3 bits (65), Expect = 4.9
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 402 PPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPA 451
P V PA P S++P L + + + +P
Sbjct: 2 PLGSSDCHTTVRPAKPPVVDRSLKPGALSNSES---IPTIDGLRHVVVPG 48
Score = 28.9 bits (64), Expect = 5.4
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 711 PPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 743
P V PA P S++P L +
Sbjct: 2 PLGSSDCHTTVRPAKPPVVDRSLKPGALSNSES 34
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 28.1 bits (63), Expect = 5.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 846 KDSNSLAYYNITPGTKVHLQLKERGGRKKSLQP 878
KD +SLA + G VHL +K + + P
Sbjct: 67 KDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECP 99
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 29.8 bits (67), Expect = 5.0
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 353 DDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKV 412
Q + + + K + Q Q ++ ++Q+ PPPPPPP
Sbjct: 362 AAAQTNAAAMATLEKLMKAFESLKSFQQQQQQQQQQQ-----QQQQQQPPPPPPPPPPPQ 416
Query: 413 EPAPPLPSQPSI 424
P PP +QP +
Sbjct: 417 LPQPPPQAQPLL 428
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 29.8 bits (67), Expect = 5.0
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 16/81 (19%)
Query: 383 QVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVV---- 438
QV D + + +I S PL + P KVV
Sbjct: 88 QVALCNADGCTASDATEIVVADTDGS-----HLAPLKEPLLEKNKPYKQNSGKVVGSYFV 142
Query: 439 -----KKGYDPKQEKIPASKV 454
+ + KIPA +
Sbjct: 143 EWGVYGRNFTVD--KIPAQNL 161
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding,
cytoplasm, acetylation, cytoskeleton, actin-binding;
1.1A {Mus musculus}
Length = 26
Score = 25.8 bits (56), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 400 IPPPPPPPSLKKVEPAPPLP 419
IPPPPP P + + P PPLP
Sbjct: 1 IPPPPPLPGVASIPPPPPLP 20
Score = 25.8 bits (56), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 709 IPPPPPPPSLKKVEPAPPLP 728
IPPPPP P + + P PPLP
Sbjct: 1 IPPPPPLPGVASIPPPPPLP 20
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 28.8 bits (64), Expect = 7.0
Identities = 11/67 (16%), Positives = 17/67 (25%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEF 769
P + + P+ PP P + PP ++P
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
Query: 770 LISPITG 776
I P G
Sbjct: 204 GIPPGRG 210
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 28.9 bits (64), Expect = 7.0
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 597 LEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMP--PMNKPKPGNFPPPTTPD 653
L+ I I+ P+ P PN P + P P N P N + +
Sbjct: 206 LKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN 264
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 28.4 bits (63), Expect = 7.3
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 11/89 (12%)
Query: 705 EQEDIPPPPPPPSLKKVEPAPPLPSQPS-----------IQPPPLPPAPDKVVVKKGYDP 753
++ED PP P S P P+ IQ D + DP
Sbjct: 4 DEEDGEPPYEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDP 63
Query: 754 KQARPPVVKPSPTDEFLISPITGEKIPAS 782
A + + P+ EK
Sbjct: 64 MAASAEYELEKRVERLELFPVELEKDSEG 92
>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein
transport; 2.42A {Homo sapiens} PDB: 3ajb_A
Length = 334
Score = 28.9 bits (64), Expect = 8.0
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 577 WDGHTSSVEAATRAA------RANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPP 630
+ ++ A + + +++L D ++ +++ L+ E+ + P
Sbjct: 137 LTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLV--EQHKSSSWINKDGSKPL 194
Query: 631 LPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMD 666
L M P + +P ++ L+ E D
Sbjct: 195 LSHYMMPDEETPLAVQACGLSPRDITTIKLLNETRD 230
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 29.2 bits (65), Expect = 8.6
Identities = 12/64 (18%), Positives = 21/64 (32%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEF 769
P PP + +P P +P PP P + V ++ + + F
Sbjct: 27 PAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANF 86
Query: 770 LISP 773
+ P
Sbjct: 87 YVCP 90
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 29.0 bits (65), Expect = 9.1
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 401 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQE 447
P + + A S+ ++ P P+ V + +
Sbjct: 11 RPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGD 57
Score = 28.6 bits (64), Expect = 9.9
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDP---------KQARPPV 760
P + + A S+ ++ P P+ V + K + V
Sbjct: 11 RPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRV 70
Query: 761 VKPSPTDEFLISPITGEK--IPASKVQE 786
+ + E+ + + +P++ +
Sbjct: 71 LGYNHNGEWCEAQTKNGQGWVPSNYITP 98
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 28.8 bits (65), Expect = 9.3
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 691 DMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKG 750
++ + E D + ++ + P ++ A P Q + Q PP + +V V
Sbjct: 476 TLKFNPETDFLTGKDGKKFKLEAP--DADELPRAEFDPGQDTYQHPPKDSSGQRVAV--- 530
Query: 751 YDPKQARPPVVKPSPTDEFLISPITGEKI 779
P R P D++ + +I
Sbjct: 531 -SPTSQRLQ--LLEPFDKWDGKDLEDLQI 556
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana,
uncharacterized putative protein, NESG, structural
genomics; NMR {Arabidopsis thaliana}
Length = 84
Score = 26.8 bits (60), Expect = 9.5
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 13/46 (28%)
Query: 835 EKINQETG-------LFF------KDSNSLAYYNITPGTKVHLQLK 867
+KI + L ++ ++ I P + + L++
Sbjct: 38 QKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 28.5 bits (62), Expect = 9.6
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 5/131 (3%)
Query: 621 PKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEE 680
P P LP+S + K P PP TP + +++ + E+
Sbjct: 18 PAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSK-----EVKQEQILSLFEDTFVPEISV 72
Query: 681 EYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPP 740
+ E ++ + + ++E E SL V +
Sbjct: 73 TTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGA 132
Query: 741 APDKVVVKKGY 751
+ +
Sbjct: 133 GRLDLPPGFMF 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.132 0.385
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,804,952
Number of extensions: 978427
Number of successful extensions: 4823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4054
Number of HSP's successfully gapped: 414
Length of query: 910
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 808
Effective length of database: 3,853,851
Effective search space: 3113911608
Effective search space used: 3113911608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (27.7 bits)