RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10054
(910 letters)
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 111 bits (280), Expect = 3e-30
Identities = 68/80 (85%), Positives = 73/80 (91%)
Query: 116 EQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDF 175
++ VPK+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDF
Sbjct: 5 QETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDF 64
Query: 176 LRPQHSLFQYFTKLLEQYTK 195
LRPQHSLF YFTKL+EQYTK
Sbjct: 65 LRPQHSLFNYFTKLVEQYTK 84
Score = 78.7 bits (194), Expect = 2e-18
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 23 IIYPPPEVR----NIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHR 78
I PP + ++V TA FVARNG +F +++ Q E N +F+FL P Y+
Sbjct: 19 FIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKL 78
Query: 79 V 79
V
Sbjct: 79 V 79
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 97.1 bits (242), Expect = 3e-25
Identities = 48/61 (78%), Positives = 56/61 (91%)
Query: 29 EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVK 88
EVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL+P DPYHAYY+H+V + +EGK +
Sbjct: 1 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 60
Query: 89 E 89
E
Sbjct: 61 E 61
Score = 73.6 bits (181), Expect = 6e-17
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 144 IVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQY 193
IV TA FVARNG F + Q E N +F+FL P Y+ + ++
Sbjct: 5 IVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF 54
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 88.4 bits (219), Expect = 8e-22
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 13 DETVSQAVVGIIYPPP--EVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPGD 69
+E Q + + PP E R +++K A FVA GPE E ++ NP F FL
Sbjct: 8 EEDYEQWLEIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNS 67
Query: 70 PYHAYYQHRVKDIREGK 86
YY+ +V +IR+
Sbjct: 68 REFLYYRRKVAEIRKSG 84
Score = 64.9 bits (158), Expect = 1e-13
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 123 DPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHS 181
D + E PP + +++ A+FVA G M+ + N F FL
Sbjct: 10 DYEQWLEIKVSPPEGAET-RRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSR 68
Query: 182 LFQYFTKLLEQYTK 195
F Y+ + + + K
Sbjct: 69 EFLYYRRKVAEIRK 82
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 65
Score = 83.3 bits (206), Expect = 2e-20
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 24 IYPP--PEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFL-SPGDPYHAYYQHRVK 80
+ PP E +N+ +K A F+A GPE E+ QN N F+FL P + YY+ ++
Sbjct: 2 VSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLD 61
Query: 81 DIRE 84
+ R+
Sbjct: 62 EFRK 65
Score = 61.7 bits (150), Expect = 8e-13
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 134 PPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLR-PQHSLFQYFTKLLEQ 192
PP ++ + A+F+A G T +Q + N F FL P ++Y+ + L++
Sbjct: 4 PPEDEEA-KNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDE 62
Query: 193 YTK 195
+ K
Sbjct: 63 FRK 65
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 41.1 bits (96), Expect = 3e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G +D +L+ YNI + +HL L+ RGG
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 39.1 bits (91), Expect = 2e-04
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERG 870
G+F KDSNSLAYYN+ G +HL LKERG
Sbjct: 58 GIFIKDSNSLAYYNMANGAVIHLALKERG 86
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 37.7 bits (87), Expect = 8e-04
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 844 FFKDSNSLAYYNITPGTKVHLQLKERGG 871
F KD+ SLA+YN+ G + L L+ER G
Sbjct: 80 FLKDNMSLAHYNVGAGEILTLSLRERSG 107
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein,
OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 36.8 bits (85), Expect = 0.001
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 12/53 (22%)
Query: 831 KHLNEKINQETGL------------FFKDSNSLAYYNITPGTKVHLQLKERGG 871
L ++I + GL +D L Y I + L K+ G
Sbjct: 31 LGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 33.7 bits (77), Expect = 0.009
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 846 KDSNSLAYYNITPGTKVHLQLKERG 870
+ ++ ++ + VH+ + R
Sbjct: 53 PNHLTVQNCDLEQQSIVHIVQRPRR 77
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 31.8 bits (72), Expect = 0.051
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 844 FFKDSNSLAYYNITPGTKVHLQLKE 868
+D LA + PG+ V L + +
Sbjct: 51 ALQDRVPLASQGLGPGSTVLLVVDK 75
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 73
Score = 31.0 bits (70), Expect = 0.074
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLK 867
G D + YNI G+ +HL L
Sbjct: 47 GKQLADDKTAKDYNIEGGSVLHLVLA 72
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 30.2 bits (68), Expect = 0.16
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLK 867
G +D L Y + P + V + L+
Sbjct: 50 GKPLEDQLPLGEYGLKPLSTVFMNLR 75
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 30.7 bits (69), Expect = 0.17
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 826 VEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
+ L ++ ++ L Y + G ++H+ G
Sbjct: 46 ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSG 91
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 29.7 bits (67), Expect = 0.23
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHL 864
G KD ++ Y+I G VHL
Sbjct: 47 GKILKDDQTVESYHIQDGHSVHL 69
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 30.7 bits (69), Expect = 0.25
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGGRKK 874
G F + +L + G + L R +
Sbjct: 71 GRFLHGNVTLGALKLPFGKTTVMHLVARETLPE 103
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 29.9 bits (67), Expect = 0.26
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 12/49 (24%)
Query: 831 KHLNEKINQETGL------------FFKDSNSLAYYNITPGTKVHLQLK 867
+ L KI + + +D ++L Y + + L ++
Sbjct: 26 EELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 74
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 31.5 bits (70), Expect = 0.34
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 396 EQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 434
E++ I P + ++ P+P + + + PP P +
Sbjct: 165 EKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQIN 203
Score = 31.5 bits (70), Expect = 0.34
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 705 EQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 743
E++ I P + ++ P+P + + + PP P +
Sbjct: 165 EKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQIN 203
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 31.1 bits (69), Expect = 0.40
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 7/141 (4%)
Query: 349 EINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPS 408
+ + + E+ + Q + ED ++ P +
Sbjct: 17 DTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAEDGDEYDDPFAGPADTISLA 76
Query: 409 LKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWV 468
++ + PS + Q PP+ V+K GY K+ K + E + RW
Sbjct: 77 SERYDKDDDGPSDGN-QFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQK------RWC 129
Query: 469 EQRDKHLNEKINQETVYAPGQ 489
+ + G+
Sbjct: 130 ALSKTVFYYYGSDKDKQQKGE 150
Score = 29.5 bits (65), Expect = 1.2
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 657 ARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPP 716
A L E + ++ E + + + + ED ++ P
Sbjct: 16 ADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAEDGDEYDDPFAGPADTISL 75
Query: 717 SLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGY 751
+ ++ + PS + Q PP+ V+K GY
Sbjct: 76 ASERYDKDDDGPSDGN-QFPPIAAQDLPFVIKAGY 109
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 28.8 bits (64), Expect = 0.78
Identities = 5/48 (10%), Positives = 12/48 (25%)
Query: 824 RWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
+ + + +L +T G K+ + G
Sbjct: 44 QKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTISG 91
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 28.7 bits (64), Expect = 1.5
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 395 EEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPP 431
+ Q P P P P P +PP
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPP 126
Score = 28.7 bits (64), Expect = 1.5
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 704 EEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPP 740
+ Q P P P P P +PP
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPP 126
Score = 28.7 bits (64), Expect = 1.6
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 401 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 433
P P P + P P P P P P
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127
Score = 28.7 bits (64), Expect = 1.6
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 710 PPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAP 742
P P P + P P P P P P
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127
Score = 27.1 bits (60), Expect = 5.1
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 16/61 (26%)
Query: 706 QEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSP 765
+ + P P P P + PPP PP+P+ PP V+P+
Sbjct: 90 KNQVSPSAPAA------PVPTPICPTTTPPPPPPPSPEA----------HVPPPYVEPTT 133
Query: 766 T 766
T
Sbjct: 134 T 134
Score = 27.1 bits (60), Expect = 6.0
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 400 IPPPPPPPSLKKVEPAPPLPSQPSIQPP-PLPPAP 433
P P P P PP + + PP P
Sbjct: 100 APVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 27.7 bits (61), Expect = 1.7
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G ++ L + P TK+ + G
Sbjct: 57 GKPAENDVKLGALKLKPNTKIMMMGTRESG 86
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 27.7 bits (61), Expect = 1.8
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 841 TGLFFKDSNSLAYYNITPGTKVHLQLK 867
G D +L Y I V + +
Sbjct: 49 AGKILNDDTALKEYKIDEKNFVVVMVT 75
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 27.2 bits (60), Expect = 2.1
Identities = 5/49 (10%), Positives = 17/49 (34%), Gaps = 12/49 (24%)
Query: 831 KHLNEKINQETGL------------FFKDSNSLAYYNITPGTKVHLQLK 867
+ L E++ + ++ +L Y++ + L ++
Sbjct: 26 EELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 74
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 27.1 bits (60), Expect = 2.2
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 18/58 (31%)
Query: 831 KHLNEKINQETG-------LFFK------DSNSLAYYNITPGTKVHLQLKERGGRKKS 875
+ L + + + G L FK L+ I G +V L G+K S
Sbjct: 29 QDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI-----GKKNS 81
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 27.3 bits (60), Expect = 2.6
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 827 EQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
E +I L D SL Y + G V L K+ G
Sbjct: 44 ESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVG 88
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 26.4 bits (58), Expect = 3.9
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKE 868
G D I V + + +
Sbjct: 50 GRPLTDKMKFEELKIPKDYVVQVIVSQ 76
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A
(Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 26.4 bits (58), Expect = 4.4
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQL 866
G D + Y I V + +
Sbjct: 52 GKILSDDVPIRDYRIDEKNFVVVMV 76
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 26.9 bits (59), Expect = 4.7
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 849 NSLAYYNITPGTKVHLQLKERGG 871
L Y I +V K
Sbjct: 77 KKLRDYGIRNRDEVSFIKKLGQK 99
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.9 bits (59), Expect = 4.9
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 831 KHLNEKINQETGL------------FFKDSNSLAYYNITPGTKVHLQLK 867
+ E I++ KD ++L + I G VHL +K
Sbjct: 55 QQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK 103
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 25.9 bits (57), Expect = 5.9
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 842 GLFFKDSNSLAYYNITPGTKVHLQLKERGG 871
G+ + + ++ + ++ GG
Sbjct: 50 GIRIQADQTPEDLDMEDNDIIEAHREQIGG 79
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 26.0 bits (57), Expect = 6.4
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 20/62 (32%)
Query: 831 KHLNEKINQETG-------LFFKDSN------------SLAYYNITPGTKVHLQLKERGG 871
L +K+ G + D + SL + G ++H + GG
Sbjct: 29 NDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA-VDVTGG 87
Query: 872 RK 873
+
Sbjct: 88 NE 89
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 27.5 bits (60), Expect = 7.2
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 578 DGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKI 619
+ + A + + + + + +VK L+ EE E++
Sbjct: 369 EAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEEL 410
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.132 0.385
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,605,635
Number of extensions: 189527
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 72
Length of query: 910
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 816
Effective length of database: 1,116,976
Effective search space: 911452416
Effective search space used: 911452416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.0 bits)