Query psy10055
Match_columns 124
No_of_seqs 202 out of 1358
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 16:45:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0056 AtpA F0F1-type ATP syn 99.4 2.1E-13 4.5E-18 116.0 2.1 52 71-124 132-188 (504)
2 PTZ00185 ATPase alpha subunit; 98.6 2.2E-08 4.8E-13 87.3 3.4 50 72-123 160-214 (574)
3 PF00008 EGF: EGF-like domain 98.6 3.1E-08 6.7E-13 55.7 2.8 31 30-61 1-32 (32)
4 PRK07165 F0F1 ATP synthase sub 98.5 6E-08 1.3E-12 84.0 3.1 51 72-124 114-169 (507)
5 KOG1353|consensus 98.5 2E-08 4.4E-13 81.3 -0.0 36 87-124 135-173 (340)
6 CHL00059 atpA ATP synthase CF1 98.5 1.2E-07 2.7E-12 81.8 3.7 51 72-124 112-167 (485)
7 smart00179 EGF_CA Calcium-bind 98.4 3.7E-07 8.1E-12 51.5 3.4 36 26-63 2-39 (39)
8 KOG1219|consensus 98.4 2.7E-07 5.9E-12 89.9 3.9 64 27-92 3865-3929(4289)
9 TIGR03324 alt_F1F0_F1_al alter 98.4 2.9E-07 6.3E-12 79.7 3.8 51 72-124 133-188 (497)
10 PRK13343 F0F1 ATP synthase sub 98.3 4.8E-07 1E-11 78.4 3.3 51 72-124 133-188 (502)
11 cd00054 EGF_CA Calcium-binding 98.2 1.6E-06 3.5E-11 48.0 3.4 36 26-63 2-38 (38)
12 TIGR00962 atpA proton transloc 98.2 1.6E-06 3.4E-11 75.2 3.5 51 72-124 132-187 (501)
13 PRK09281 F0F1 ATP synthase sub 98.1 2.3E-06 4.9E-11 74.3 3.9 51 72-124 133-188 (502)
14 KOG1219|consensus 98.1 2.8E-06 6E-11 83.3 4.8 70 25-96 3902-3972(4289)
15 cd00053 EGF Epidermal growth f 97.8 2.2E-05 4.7E-10 42.6 3.3 31 32-63 5-36 (36)
16 smart00181 EGF Epidermal growt 97.7 3.7E-05 8E-10 42.6 3.2 32 29-63 2-35 (35)
17 PF07645 EGF_CA: Calcium-bindi 97.7 5.4E-05 1.2E-09 44.5 3.4 33 25-58 1-34 (42)
18 KOG4289|consensus 97.5 8.4E-05 1.8E-09 71.1 4.0 68 25-94 1238-1308(2531)
19 cd01132 F1_ATPase_alpha F1 ATP 97.5 9.3E-05 2E-09 60.0 3.5 47 75-123 43-94 (274)
20 KOG3516|consensus 97.5 0.00017 3.6E-09 67.7 5.4 66 25-91 544-621 (1306)
21 cd01135 V_A-ATPase_B V/A-type 97.5 8.9E-05 1.9E-09 60.1 3.2 49 72-123 40-93 (276)
22 KOG3514|consensus 97.4 8E-05 1.7E-09 69.5 2.8 38 28-66 625-662 (1591)
23 KOG4289|consensus 97.4 0.00014 3E-09 69.7 4.2 40 25-66 1500-1539(2531)
24 CHL00060 atpB ATP synthase CF1 97.2 0.00027 5.8E-09 61.5 3.3 49 73-123 133-186 (494)
25 KOG3516|consensus 97.1 0.00033 7.2E-09 65.8 3.4 46 20-66 949-994 (1306)
26 cd01133 F1-ATPase_beta F1 ATP 97.1 0.00044 9.6E-09 56.0 3.2 49 73-123 41-94 (274)
27 TIGR03305 alt_F1F0_F1_bet alte 96.9 0.0008 1.7E-08 57.9 3.3 49 73-123 110-163 (449)
28 TIGR01041 ATP_syn_B_arch ATP s 96.6 0.0022 4.7E-08 55.4 3.5 48 73-123 113-165 (458)
29 PRK04196 V-type ATP synthase s 96.5 0.0022 4.9E-08 55.3 3.4 48 72-122 114-166 (460)
30 PF07974 EGF_2: EGF-like domai 96.5 0.0034 7.4E-08 35.3 2.9 27 33-62 6-32 (32)
31 PRK09280 F0F1 ATP synthase sub 96.4 0.0026 5.6E-08 55.0 3.0 35 87-123 132-169 (463)
32 TIGR01040 V-ATPase_V1_B V-type 96.3 0.0033 7.1E-08 54.5 3.4 48 73-123 113-165 (466)
33 TIGR01039 atpD ATP synthase, F 96.1 0.0044 9.5E-08 53.6 3.0 48 74-123 116-168 (461)
34 PRK12597 F0F1 ATP synthase sub 96.0 0.0057 1.2E-07 52.9 3.3 48 74-123 116-168 (461)
35 PF12661 hEGF: Human growth fa 96.0 0.0052 1.1E-07 28.1 1.6 13 49-62 1-13 (13)
36 PRK12678 transcription termina 96.0 0.0043 9.3E-08 55.5 2.3 34 87-123 404-440 (672)
37 PRK09376 rho transcription ter 95.4 0.011 2.4E-07 50.6 2.4 34 85-121 155-191 (416)
38 PRK12608 transcription termina 95.2 0.014 3.1E-07 49.4 2.7 20 98-117 133-152 (380)
39 PF12947 EGF_3: EGF domain; I 94.6 0.03 6.5E-07 32.1 2.1 27 33-60 6-32 (36)
40 KOG1225|consensus 93.9 0.11 2.3E-06 45.8 5.0 56 3-66 248-313 (525)
41 cd01134 V_A-ATPase_A V/A-type 93.4 0.068 1.5E-06 45.2 2.9 34 87-123 145-181 (369)
42 KOG4260|consensus 92.8 0.049 1.1E-06 44.9 1.2 46 13-59 218-269 (350)
43 PHA03099 epidermal growth fact 92.6 0.086 1.9E-06 38.8 2.1 32 32-65 50-83 (139)
44 PF14670 FXa_inhibition: Coagu 92.2 0.14 3E-06 29.4 2.2 18 40-58 11-28 (36)
45 cd01128 rho_factor Transcripti 91.8 0.13 2.8E-06 40.9 2.4 23 95-117 13-35 (249)
46 PHA02887 EGF-like protein; Pro 91.8 0.14 3E-06 37.1 2.3 32 32-65 91-124 (126)
47 PRK02118 V-type ATP synthase s 91.6 0.18 3.9E-06 43.5 3.3 34 87-123 128-164 (436)
48 PF13555 AAA_29: P-loop contai 91.3 0.16 3.5E-06 32.5 2.0 20 100-120 25-44 (62)
49 KOG1214|consensus 91.1 0.2 4.2E-06 46.9 3.1 39 24-64 825-865 (1289)
50 KOG1217|consensus 90.6 0.24 5.2E-06 40.1 3.0 36 25-62 270-306 (487)
51 PF13476 AAA_23: AAA domain; P 90.6 0.18 3.8E-06 36.5 2.0 21 98-119 19-39 (202)
52 PRK06936 type III secretion sy 90.2 0.27 6E-06 42.4 3.0 50 73-123 134-186 (439)
53 TIGR01042 V-ATPase_V1_A V-type 90.2 0.22 4.8E-06 44.5 2.5 41 76-118 201-246 (591)
54 PRK08149 ATP synthase SpaL; Va 89.5 0.26 5.7E-06 42.3 2.4 29 94-123 147-175 (428)
55 PF06745 KaiC: KaiC; InterPro 88.7 0.36 7.8E-06 36.6 2.5 29 93-121 14-42 (226)
56 KOG1217|consensus 88.6 0.39 8.5E-06 38.9 2.7 48 17-65 156-208 (487)
57 cd01393 recA_like RecA is a b 88.0 0.51 1.1E-05 35.5 2.9 29 93-121 14-42 (226)
58 cd01123 Rad51_DMC1_radA Rad51_ 87.9 0.5 1.1E-05 35.7 2.8 29 93-121 14-42 (235)
59 PRK05973 replicative DNA helic 87.9 0.51 1.1E-05 37.4 2.9 28 94-121 60-87 (237)
60 PRK05922 type III secretion sy 87.8 0.39 8.5E-06 41.4 2.4 28 95-123 154-181 (434)
61 PRK08533 flagellar accessory p 87.6 0.63 1.4E-05 36.2 3.2 30 92-121 18-47 (230)
62 PRK07196 fliI flagellum-specif 87.5 0.37 8E-06 41.5 2.0 36 87-123 143-179 (434)
63 TIGR03881 KaiC_arch_4 KaiC dom 87.3 0.59 1.3E-05 35.4 2.9 29 93-121 15-43 (229)
64 TIGR03878 thermo_KaiC_2 KaiC d 86.9 0.53 1.2E-05 37.2 2.5 30 92-121 30-59 (259)
65 TIGR03877 thermo_KaiC_1 KaiC d 86.8 0.62 1.4E-05 36.0 2.8 30 92-121 15-44 (237)
66 TIGR02012 tigrfam_recA protein 86.3 0.61 1.3E-05 38.6 2.7 29 93-121 50-78 (321)
67 PRK08927 fliI flagellum-specif 86.3 0.55 1.2E-05 40.6 2.5 48 74-122 131-181 (442)
68 cd01394 radB RadB. The archaea 86.3 0.7 1.5E-05 34.8 2.8 29 93-121 14-42 (218)
69 PRK14247 phosphate ABC transpo 86.2 0.45 9.8E-06 36.6 1.7 24 92-115 23-46 (250)
70 PF13481 AAA_25: AAA domain; P 86.1 0.71 1.5E-05 33.7 2.7 27 95-121 28-55 (193)
71 PF12662 cEGF: Complement Clr- 86.1 0.44 9.6E-06 25.1 1.1 16 47-63 1-20 (24)
72 TIGR03497 FliI_clade2 flagella 85.8 0.57 1.2E-05 40.0 2.3 29 94-123 133-161 (413)
73 PF07475 Hpr_kinase_C: HPr Ser 85.6 0.58 1.3E-05 35.7 2.0 24 97-120 17-40 (171)
74 cd03229 ABC_Class3 This class 85.5 0.46 1E-05 34.9 1.4 24 92-115 20-43 (178)
75 TIGR02673 FtsE cell division A 85.5 0.49 1.1E-05 35.5 1.6 24 92-115 22-45 (214)
76 PF01637 Arch_ATPase: Archaeal 85.4 0.82 1.8E-05 33.5 2.7 22 98-119 20-41 (234)
77 TIGR01026 fliI_yscN ATPase Fli 85.4 0.79 1.7E-05 39.5 3.0 28 94-122 159-186 (440)
78 cd03225 ABC_cobalt_CbiO_domain 85.4 0.43 9.4E-06 35.7 1.2 23 93-115 22-44 (211)
79 cd03269 ABC_putative_ATPase Th 85.3 0.46 9.9E-06 35.6 1.3 24 92-115 20-43 (210)
80 TIGR01166 cbiO cobalt transpor 85.3 0.49 1.1E-05 34.9 1.5 23 93-115 13-35 (190)
81 TIGR02211 LolD_lipo_ex lipopro 85.3 0.47 1E-05 35.7 1.4 24 92-115 25-48 (221)
82 cd03255 ABC_MJ0796_Lo1CDE_FtsE 85.1 0.48 1E-05 35.6 1.4 24 92-115 24-47 (218)
83 PRK11701 phnK phosphonate C-P 85.0 0.47 1E-05 36.8 1.3 24 92-115 26-49 (258)
84 cd03256 ABC_PhnC_transporter A 84.9 0.53 1.1E-05 35.8 1.5 24 92-115 21-44 (241)
85 TIGR02315 ABC_phnC phosphonate 84.9 0.54 1.2E-05 35.9 1.6 27 92-119 22-48 (243)
86 cd01136 ATPase_flagellum-secre 84.9 0.73 1.6E-05 38.2 2.4 27 95-122 66-92 (326)
87 TIGR03498 FliI_clade3 flagella 84.8 1.1 2.5E-05 38.3 3.6 31 91-122 133-163 (418)
88 cd03259 ABC_Carb_Solutes_like 84.7 0.56 1.2E-05 35.2 1.6 24 92-115 20-43 (213)
89 cd00009 AAA The AAA+ (ATPases 84.6 0.93 2E-05 30.1 2.5 22 98-119 19-40 (151)
90 TIGR00960 3a0501s02 Type II (G 84.4 0.55 1.2E-05 35.3 1.4 24 92-115 23-46 (216)
91 KOG3514|consensus 84.4 0.63 1.4E-05 44.6 2.0 38 27-65 1019-1056(1591)
92 cd03296 ABC_CysA_sulfate_impor 84.3 0.56 1.2E-05 35.9 1.5 24 92-115 22-45 (239)
93 PRK10895 lipopolysaccharide AB 84.3 0.58 1.3E-05 35.8 1.5 24 92-115 23-46 (241)
94 PRK09361 radB DNA repair and r 84.3 0.98 2.1E-05 34.2 2.8 29 93-121 18-46 (225)
95 TIGR03496 FliI_clade1 flagella 84.2 0.74 1.6E-05 39.3 2.3 27 95-122 134-160 (411)
96 cd03260 ABC_PstB_phosphate_tra 84.2 0.56 1.2E-05 35.5 1.4 24 92-115 20-43 (227)
97 cd03249 ABC_MTABC3_MDL1_MDL2 M 84.1 0.54 1.2E-05 35.9 1.3 24 93-116 24-47 (238)
98 cd03266 ABC_NatA_sodium_export 84.1 0.55 1.2E-05 35.3 1.3 23 93-115 26-48 (218)
99 cd03261 ABC_Org_Solvent_Resist 84.0 0.57 1.2E-05 35.7 1.4 23 93-115 21-43 (235)
100 PRK08972 fliI flagellum-specif 84.0 0.73 1.6E-05 39.9 2.2 26 95-121 159-184 (444)
101 TIGR01043 ATP_syn_A_arch ATP s 84.0 0.68 1.5E-05 41.4 2.0 28 87-116 210-240 (578)
102 cd03214 ABC_Iron-Siderophores_ 84.0 0.57 1.2E-05 34.5 1.3 24 92-115 19-42 (180)
103 cd03235 ABC_Metallic_Cations A 84.0 0.65 1.4E-05 34.8 1.6 24 92-115 19-42 (213)
104 TIGR02546 III_secr_ATP type II 83.9 1 2.2E-05 38.6 2.9 48 75-123 119-169 (422)
105 cd03270 ABC_UvrA_I The excisio 83.7 1 2.2E-05 34.6 2.7 28 92-119 15-42 (226)
106 PRK14262 phosphate ABC transpo 83.7 0.65 1.4E-05 35.8 1.6 24 92-115 23-46 (250)
107 cd03292 ABC_FtsE_transporter F 83.7 0.56 1.2E-05 35.0 1.2 23 93-115 22-44 (214)
108 PRK06820 type III secretion sy 83.7 0.79 1.7E-05 39.6 2.3 49 73-122 135-186 (440)
109 TIGR03410 urea_trans_UrtE urea 83.7 0.66 1.4E-05 35.2 1.6 25 92-116 20-44 (230)
110 cd03226 ABC_cobalt_CbiO_domain 83.7 0.62 1.3E-05 34.8 1.4 24 92-115 20-43 (205)
111 PHA00729 NTP-binding motif con 83.7 0.67 1.4E-05 36.7 1.7 20 99-118 18-37 (226)
112 cd03231 ABC_CcmA_heme_exporter 83.7 0.61 1.3E-05 34.9 1.4 24 92-115 20-43 (201)
113 cd03258 ABC_MetN_methionine_tr 83.6 0.63 1.4E-05 35.4 1.5 24 92-115 25-48 (233)
114 PRK14255 phosphate ABC transpo 83.6 0.65 1.4E-05 35.8 1.6 24 92-115 25-48 (252)
115 PRK04328 hypothetical protein; 83.6 1.1 2.4E-05 35.1 2.9 29 93-121 18-46 (249)
116 PRK11124 artP arginine transpo 83.6 0.67 1.5E-05 35.5 1.6 23 93-115 23-45 (242)
117 TIGR02881 spore_V_K stage V sp 83.5 0.62 1.3E-05 36.5 1.4 17 100-116 44-60 (261)
118 PRK14267 phosphate ABC transpo 83.5 0.65 1.4E-05 35.8 1.5 24 92-115 24-47 (253)
119 cd03265 ABC_DrrA DrrA is the A 83.5 0.67 1.5E-05 35.0 1.6 25 92-116 20-44 (220)
120 COG0467 RAD55 RecA-superfamily 83.4 1 2.2E-05 35.2 2.5 30 93-122 18-47 (260)
121 PF01695 IstB_IS21: IstB-like 83.4 0.86 1.9E-05 34.1 2.1 23 97-119 46-68 (178)
122 PRK09493 glnQ glutamine ABC tr 83.3 0.65 1.4E-05 35.5 1.5 24 92-115 21-44 (240)
123 TIGR03864 PQQ_ABC_ATP ABC tran 83.3 0.64 1.4E-05 35.5 1.4 24 92-115 21-44 (236)
124 cd03218 ABC_YhbG The ABC trans 83.3 0.73 1.6E-05 34.9 1.7 24 92-115 20-43 (232)
125 TIGR00416 sms DNA repair prote 83.3 1 2.2E-05 38.8 2.7 31 91-121 87-117 (454)
126 PF03796 DnaB_C: DnaB-like hel 83.2 1.2 2.5E-05 34.7 2.9 28 94-121 15-42 (259)
127 PRK11264 putative amino-acid A 83.2 0.69 1.5E-05 35.5 1.6 23 93-115 24-46 (250)
128 PRK13543 cytochrome c biogenes 83.2 0.64 1.4E-05 35.2 1.3 24 92-115 31-54 (214)
129 cd03301 ABC_MalK_N The N-termi 83.2 0.63 1.4E-05 34.8 1.3 24 92-115 20-43 (213)
130 PRK08116 hypothetical protein; 83.2 0.81 1.8E-05 36.5 2.0 20 101-121 117-136 (268)
131 TIGR02236 recomb_radA DNA repa 83.1 1.2 2.5E-05 35.8 2.9 30 92-121 89-118 (310)
132 PRK09354 recA recombinase A; P 83.1 1 2.3E-05 37.7 2.7 29 93-121 55-83 (349)
133 cd03262 ABC_HisP_GlnQ_permease 83.0 0.73 1.6E-05 34.4 1.6 24 92-115 20-43 (213)
134 TIGR02323 CP_lyasePhnK phospho 83.0 0.69 1.5E-05 35.6 1.5 24 92-115 23-46 (253)
135 cd03217 ABC_FeS_Assembly ABC-t 83.0 0.82 1.8E-05 34.2 1.8 24 92-115 20-43 (200)
136 TIGR03608 L_ocin_972_ABC putat 82.9 0.65 1.4E-05 34.5 1.2 24 92-115 18-41 (206)
137 PRK10575 iron-hydroxamate tran 82.9 0.74 1.6E-05 36.0 1.6 24 92-115 31-54 (265)
138 TIGR03420 DnaA_homol_Hda DnaA 82.8 0.71 1.5E-05 34.6 1.4 21 98-118 38-58 (226)
139 cd03298 ABC_ThiQ_thiamine_tran 82.8 0.69 1.5E-05 34.6 1.4 25 91-115 17-41 (211)
140 PRK07594 type III secretion sy 82.7 1 2.2E-05 38.9 2.5 28 94-122 151-178 (433)
141 PRK10584 putative ABC transpor 82.7 0.67 1.5E-05 35.1 1.3 24 92-115 30-53 (228)
142 cd03257 ABC_NikE_OppD_transpor 82.7 0.78 1.7E-05 34.5 1.6 24 92-115 25-48 (228)
143 PRK13541 cytochrome c biogenes 82.7 0.64 1.4E-05 34.6 1.2 25 91-115 19-43 (195)
144 PRK14272 phosphate ABC transpo 82.7 0.74 1.6E-05 35.4 1.5 24 92-115 24-47 (252)
145 PRK13540 cytochrome c biogenes 82.6 0.74 1.6E-05 34.4 1.5 24 92-115 21-44 (200)
146 cd03293 ABC_NrtD_SsuB_transpor 82.6 0.66 1.4E-05 35.0 1.2 24 92-115 24-47 (220)
147 cd00983 recA RecA is a bacter 82.5 1.1 2.4E-05 37.2 2.6 29 93-121 50-78 (325)
148 cd03250 ABCC_MRP_domain1 Domai 82.5 0.77 1.7E-05 34.2 1.5 24 92-115 25-48 (204)
149 TIGR03880 KaiC_arch_3 KaiC dom 82.4 1.3 2.9E-05 33.5 2.9 29 93-121 11-39 (224)
150 PRK10908 cell division protein 82.3 0.77 1.7E-05 34.7 1.5 24 92-115 22-45 (222)
151 cd03216 ABC_Carb_Monos_I This 82.3 0.72 1.6E-05 33.6 1.3 24 92-115 20-43 (163)
152 cd00267 ABC_ATPase ABC (ATP-bi 82.3 0.7 1.5E-05 33.0 1.2 24 92-115 19-42 (157)
153 TIGR01189 ccmA heme ABC export 82.3 0.77 1.7E-05 34.2 1.5 24 92-115 20-43 (198)
154 cd03263 ABC_subfamily_A The AB 82.2 0.74 1.6E-05 34.6 1.4 24 92-115 22-45 (220)
155 PRK04301 radA DNA repair and r 82.2 1.3 2.8E-05 35.8 2.8 30 92-121 96-125 (317)
156 cd03223 ABCD_peroxisomal_ALDP 82.1 0.81 1.8E-05 33.4 1.5 24 92-115 21-44 (166)
157 PRK14273 phosphate ABC transpo 82.1 0.84 1.8E-05 35.3 1.7 24 92-115 27-50 (254)
158 cd01122 GP4d_helicase GP4d_hel 82.1 1.2 2.5E-05 34.6 2.5 28 94-121 26-53 (271)
159 cd03215 ABC_Carb_Monos_II This 82.1 0.75 1.6E-05 33.9 1.3 23 93-115 21-43 (182)
160 cd03247 ABCC_cytochrome_bd The 82.0 0.72 1.5E-05 33.8 1.2 24 92-115 22-45 (178)
161 TIGR00767 rho transcription te 82.0 1.1 2.4E-05 38.5 2.5 24 97-121 167-190 (415)
162 TIGR03005 ectoine_ehuA ectoine 81.9 0.81 1.8E-05 35.3 1.5 24 92-115 20-43 (252)
163 CHL00131 ycf16 sulfate ABC tra 81.9 0.84 1.8E-05 35.1 1.6 24 92-115 27-50 (252)
164 cd03252 ABCC_Hemolysin The ABC 81.9 0.75 1.6E-05 35.1 1.3 24 92-115 22-45 (237)
165 cd03224 ABC_TM1139_LivF_branch 81.9 0.78 1.7E-05 34.5 1.4 24 92-115 20-43 (222)
166 cd03251 ABCC_MsbA MsbA is an e 81.7 0.79 1.7E-05 34.8 1.4 23 93-115 23-45 (234)
167 cd03219 ABC_Mj1267_LivG_branch 81.7 0.84 1.8E-05 34.7 1.5 24 92-115 20-43 (236)
168 cd03295 ABC_OpuCA_Osmoprotecti 81.7 0.8 1.7E-05 35.1 1.4 24 92-115 21-44 (242)
169 PRK14250 phosphate ABC transpo 81.7 0.82 1.8E-05 35.2 1.5 24 92-115 23-46 (241)
170 PRK14251 phosphate ABC transpo 81.7 0.81 1.8E-05 35.2 1.4 24 92-115 24-47 (251)
171 TIGR01242 26Sp45 26S proteasom 81.7 1.1 2.3E-05 36.9 2.2 23 94-116 152-174 (364)
172 PRK09984 phosphonate/organopho 81.7 0.81 1.8E-05 35.6 1.4 24 92-115 24-47 (262)
173 PRK10418 nikD nickel transport 81.6 0.79 1.7E-05 35.6 1.4 23 93-115 24-46 (254)
174 PRK14243 phosphate transporter 81.6 0.88 1.9E-05 35.6 1.6 24 92-115 30-53 (264)
175 KOG0989|consensus 81.6 0.83 1.8E-05 38.3 1.5 19 98-116 57-75 (346)
176 TIGR01978 sufC FeS assembly AT 81.4 0.99 2.1E-05 34.4 1.8 24 92-115 20-43 (243)
177 PRK11248 tauB taurine transpor 81.4 0.86 1.9E-05 35.6 1.5 24 92-115 21-44 (255)
178 PRK11629 lolD lipoprotein tran 81.3 0.81 1.8E-05 34.9 1.3 24 92-115 29-52 (233)
179 TIGR03873 F420-0_ABC_ATP propo 81.3 0.85 1.8E-05 35.3 1.4 23 93-115 22-44 (256)
180 PF00931 NB-ARC: NB-ARC domain 81.2 1.2 2.7E-05 34.3 2.3 24 97-120 18-41 (287)
181 PRK14239 phosphate transporter 81.2 0.87 1.9E-05 35.0 1.4 23 93-115 26-48 (252)
182 PRK10771 thiQ thiamine transpo 81.0 0.83 1.8E-05 34.8 1.3 25 91-115 18-42 (232)
183 PRK13538 cytochrome c biogenes 81.0 0.9 2E-05 34.0 1.4 24 92-115 21-44 (204)
184 PRK11614 livF leucine/isoleuci 80.9 0.85 1.8E-05 34.8 1.3 23 93-115 26-48 (237)
185 COG1066 Sms Predicted ATP-depe 80.9 1.2 2.6E-05 38.6 2.3 33 87-119 82-114 (456)
186 TIGR02324 CP_lyasePhnL phospho 80.9 0.93 2E-05 34.2 1.5 24 92-115 28-51 (224)
187 PRK14274 phosphate ABC transpo 80.9 0.82 1.8E-05 35.5 1.2 24 93-116 33-56 (259)
188 cd03267 ABC_NatA_like Similar 80.9 0.88 1.9E-05 35.0 1.4 24 92-115 41-64 (236)
189 PRK14242 phosphate transporter 80.8 0.86 1.9E-05 35.1 1.3 23 93-115 27-49 (253)
190 cd03300 ABC_PotA_N PotA is an 80.8 0.97 2.1E-05 34.5 1.6 23 93-115 21-43 (232)
191 PRK14253 phosphate ABC transpo 80.8 0.93 2E-05 34.8 1.5 23 93-115 24-46 (249)
192 PRK14248 phosphate ABC transpo 80.7 0.88 1.9E-05 35.6 1.4 24 92-115 41-64 (268)
193 COG1157 FliI Flagellar biosynt 80.7 1.4 3E-05 38.2 2.6 44 72-115 134-180 (441)
194 cd03268 ABC_BcrA_bacitracin_re 80.7 0.87 1.9E-05 34.0 1.3 24 92-115 20-43 (208)
195 cd03245 ABCC_bacteriocin_expor 80.7 0.87 1.9E-05 34.2 1.3 23 93-115 25-47 (220)
196 cd01475 vWA_Matrilin VWA_Matri 80.6 1.5 3.2E-05 33.5 2.6 31 25-58 186-217 (224)
197 PRK10419 nikE nickel transport 80.6 0.94 2E-05 35.6 1.5 24 92-115 32-55 (268)
198 PRK14235 phosphate transporter 80.6 0.9 1.9E-05 35.6 1.4 24 92-115 39-62 (267)
199 cd03254 ABCC_Glucan_exporter_l 80.6 0.94 2E-05 34.3 1.4 23 93-115 24-46 (229)
200 PRK14270 phosphate ABC transpo 80.5 0.95 2.1E-05 34.9 1.5 24 92-115 24-47 (251)
201 PRK06793 fliI flagellum-specif 80.5 1.3 2.9E-05 38.1 2.5 28 95-122 153-180 (432)
202 PRK14266 phosphate ABC transpo 80.5 0.88 1.9E-05 35.0 1.3 24 92-115 23-46 (250)
203 cd03246 ABCC_Protease_Secretio 80.5 0.94 2E-05 33.1 1.4 24 92-115 22-45 (173)
204 PRK14238 phosphate transporter 80.5 0.89 1.9E-05 35.8 1.3 24 92-115 44-67 (271)
205 PRK06921 hypothetical protein; 80.5 1.2 2.5E-05 35.6 2.0 19 98-116 117-135 (266)
206 TIGR03740 galliderm_ABC gallid 80.4 0.91 2E-05 34.3 1.3 23 93-115 21-43 (223)
207 PRK05642 DNA replication initi 80.4 1.2 2.6E-05 34.5 2.0 16 101-116 48-63 (234)
208 cd03244 ABCC_MRP_domain2 Domai 80.4 0.94 2E-05 34.1 1.4 23 93-115 25-47 (221)
209 cd03238 ABC_UvrA The excision 80.4 0.9 1.9E-05 34.1 1.2 27 93-120 16-42 (176)
210 PRK10247 putative ABC transpor 80.4 0.95 2.1E-05 34.5 1.4 24 92-115 27-50 (225)
211 PRK10253 iron-enterobactin tra 80.3 1.1 2.3E-05 35.1 1.7 24 92-115 27-50 (265)
212 cd03221 ABCF_EF-3 ABCF_EF-3 E 80.3 0.94 2E-05 32.4 1.3 23 93-115 21-43 (144)
213 PRK08903 DnaA regulatory inact 80.3 0.98 2.1E-05 34.2 1.4 19 98-116 42-60 (227)
214 TIGR00972 3a0107s01c2 phosphat 80.3 1 2.2E-05 34.6 1.6 24 92-115 21-44 (247)
215 PRK14265 phosphate ABC transpo 80.2 1 2.2E-05 35.5 1.6 24 92-115 40-63 (274)
216 PRK14261 phosphate ABC transpo 80.2 0.97 2.1E-05 34.9 1.4 23 93-115 27-49 (253)
217 PRK13548 hmuV hemin importer A 80.2 0.96 2.1E-05 35.3 1.4 24 92-115 22-45 (258)
218 cd03228 ABCC_MRP_Like The MRP 80.1 0.95 2.1E-05 33.0 1.3 23 93-115 23-45 (171)
219 PRK11300 livG leucine/isoleuci 80.1 1 2.2E-05 34.7 1.4 24 92-115 25-48 (255)
220 cd03248 ABCC_TAP TAP, the Tran 80.0 0.97 2.1E-05 34.2 1.3 22 94-115 36-57 (226)
221 cd01121 Sms Sms (bacterial rad 79.9 1.7 3.7E-05 36.5 2.9 31 91-121 75-105 (372)
222 KOG1836|consensus 79.9 2.4 5.3E-05 42.3 4.2 43 29-73 777-822 (1705)
223 PRK13649 cbiO cobalt transport 79.8 0.92 2E-05 35.7 1.2 24 92-115 27-50 (280)
224 cd03230 ABC_DR_subfamily_A Thi 79.8 0.98 2.1E-05 33.0 1.3 23 93-115 21-43 (173)
225 PRK14241 phosphate transporter 79.7 0.98 2.1E-05 35.0 1.3 23 93-115 25-47 (258)
226 PRK08472 fliI flagellum-specif 79.7 1.6 3.4E-05 37.7 2.6 27 95-122 154-180 (434)
227 TIGR00665 DnaB replicative DNA 79.7 1.7 3.8E-05 36.4 2.9 28 94-121 191-218 (434)
228 PRK11831 putative ABC transpor 79.6 0.96 2.1E-05 35.5 1.2 24 92-115 27-50 (269)
229 PRK14256 phosphate ABC transpo 79.6 1 2.3E-05 34.7 1.4 24 92-115 24-47 (252)
230 PRK07960 fliI flagellum-specif 79.5 1.7 3.6E-05 37.8 2.8 35 87-122 163-198 (455)
231 PRK14245 phosphate ABC transpo 79.5 1 2.2E-05 34.7 1.3 24 92-115 23-46 (250)
232 PRK13539 cytochrome c biogenes 79.4 1 2.2E-05 33.8 1.3 28 92-120 22-49 (207)
233 TIGR02655 circ_KaiC circadian 79.4 1.9 4.1E-05 37.1 3.0 33 89-121 254-286 (484)
234 TIGR02238 recomb_DMC1 meiotic 79.4 2 4.3E-05 35.2 3.0 30 92-121 90-119 (313)
235 TIGR03600 phage_DnaB phage rep 79.3 1.9 4E-05 36.2 2.9 28 94-121 190-217 (421)
236 PRK14269 phosphate ABC transpo 79.3 1 2.2E-05 34.7 1.2 23 93-115 23-45 (246)
237 cd03232 ABC_PDR_domain2 The pl 79.3 0.93 2E-05 33.7 1.0 24 92-115 27-50 (192)
238 TIGR01277 thiQ thiamine ABC tr 79.3 0.94 2E-05 34.1 1.1 25 91-115 17-41 (213)
239 PRK15056 manganese/iron transp 79.2 1 2.2E-05 35.4 1.3 23 93-115 28-50 (272)
240 PRK12377 putative replication 79.2 1.1 2.5E-05 35.5 1.6 19 100-118 103-121 (248)
241 PRK09544 znuC high-affinity zi 79.2 1 2.2E-05 35.2 1.2 23 93-115 25-47 (251)
242 PF00954 S_locus_glycop: S-loc 79.2 2.4 5.2E-05 29.0 3.0 34 25-60 76-109 (110)
243 cd01853 Toc34_like Toc34-like 79.1 1.7 3.6E-05 34.5 2.4 28 95-123 28-55 (249)
244 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 79.1 1.1 2.4E-05 34.2 1.4 24 92-115 42-65 (224)
245 PRK06002 fliI flagellum-specif 79.1 1.5 3.3E-05 38.0 2.4 21 95-115 162-182 (450)
246 PF13191 AAA_16: AAA ATPase do 79.0 1.1 2.4E-05 32.0 1.3 20 98-117 24-43 (185)
247 PRK07952 DNA replication prote 79.0 1.4 3E-05 34.9 2.0 19 100-118 101-119 (244)
248 PRK14240 phosphate transporter 78.9 1.1 2.5E-05 34.4 1.4 25 91-115 22-46 (250)
249 PRK10744 pstB phosphate transp 78.9 1.1 2.5E-05 34.8 1.4 24 92-115 33-56 (260)
250 COG0488 Uup ATPase components 78.9 1.1 2.4E-05 39.5 1.5 26 90-115 340-365 (530)
251 PRK14260 phosphate ABC transpo 78.9 1 2.2E-05 35.0 1.2 24 92-115 27-50 (259)
252 PRK14244 phosphate ABC transpo 78.8 1.1 2.4E-05 34.6 1.3 24 92-115 25-48 (251)
253 cd03222 ABC_RNaseL_inhibitor T 78.8 1.3 2.8E-05 33.3 1.6 23 93-115 20-42 (177)
254 PRK11247 ssuB aliphatic sulfon 78.7 1.1 2.4E-05 35.3 1.3 24 92-115 32-55 (257)
255 PRK03992 proteasome-activating 78.7 1.5 3.3E-05 36.6 2.2 25 92-116 159-183 (389)
256 PRK13638 cbiO cobalt transport 78.7 1.1 2.4E-05 35.1 1.3 23 93-115 22-44 (271)
257 COG0468 RecA RecA/RadA recombi 78.6 1.5 3.2E-05 35.8 2.0 26 98-123 60-86 (279)
258 PRK13547 hmuV hemin importer A 78.5 1.2 2.6E-05 35.4 1.5 23 93-115 22-44 (272)
259 PRK08084 DNA replication initi 78.4 1.2 2.6E-05 34.5 1.4 18 99-116 46-63 (235)
260 PRK09302 circadian clock prote 78.3 2 4.4E-05 36.9 2.9 30 92-121 25-54 (509)
261 PRK11231 fecE iron-dicitrate t 78.2 1.3 2.8E-05 34.3 1.5 24 92-115 22-45 (255)
262 TIGR00362 DnaA chromosomal rep 78.1 1.5 3.2E-05 36.5 2.0 18 99-116 137-154 (405)
263 cd03299 ABC_ModC_like Archeal 78.1 1.2 2.6E-05 34.1 1.3 24 93-116 20-43 (235)
264 PRK14271 phosphate ABC transpo 78.1 1.2 2.6E-05 35.2 1.4 24 92-115 41-64 (276)
265 cd03369 ABCC_NFT1 Domain 2 of 78.1 1.2 2.6E-05 33.2 1.4 24 93-116 29-52 (207)
266 TIGR02769 nickel_nikE nickel i 78.1 1.3 2.9E-05 34.5 1.6 24 92-115 31-54 (265)
267 cd03213 ABCG_EPDR ABCG transpo 78.1 1.3 2.8E-05 33.0 1.5 23 93-115 30-52 (194)
268 PRK05428 HPr kinase/phosphoryl 78.0 1.6 3.4E-05 36.2 2.0 24 97-120 145-168 (308)
269 PRK13632 cbiO cobalt transport 77.9 1.2 2.7E-05 34.9 1.4 23 93-115 30-52 (271)
270 PLN03187 meiotic recombination 77.8 2.3 5E-05 35.5 3.0 30 92-121 120-149 (344)
271 PRK14236 phosphate transporter 77.8 1.2 2.7E-05 34.9 1.4 24 92-115 45-68 (272)
272 PRK11823 DNA repair protein Ra 77.8 2.2 4.7E-05 36.6 2.9 32 90-121 72-103 (446)
273 PRK05748 replicative DNA helic 77.8 2.2 4.8E-05 36.2 3.0 28 94-121 199-226 (448)
274 TIGR00968 3a0106s01 sulfate AB 77.8 1.2 2.7E-05 34.1 1.3 23 93-115 21-43 (237)
275 TIGR02655 circ_KaiC circadian 77.8 2.1 4.6E-05 36.8 2.9 30 92-121 15-44 (484)
276 PRK15112 antimicrobial peptide 77.8 1.4 2.9E-05 34.6 1.6 24 92-115 33-56 (267)
277 cd03264 ABC_drug_resistance_li 77.8 1.3 2.9E-05 33.1 1.5 22 93-115 21-42 (211)
278 PRK14268 phosphate ABC transpo 77.6 1.2 2.7E-05 34.5 1.3 24 92-115 32-55 (258)
279 PTZ00454 26S protease regulato 77.6 1.8 3.8E-05 36.7 2.3 25 92-116 173-197 (398)
280 PRK09580 sufC cysteine desulfu 77.6 1.4 3.1E-05 33.7 1.6 23 93-115 22-44 (248)
281 TIGR02982 heterocyst_DevA ABC 77.6 1.3 2.8E-05 33.5 1.4 24 92-115 25-48 (220)
282 PRK08939 primosomal protein Dn 77.6 1.6 3.5E-05 35.6 2.0 19 98-116 156-174 (306)
283 cd03253 ABCC_ATM1_transporter 77.5 1.3 2.7E-05 33.7 1.3 24 92-115 21-44 (236)
284 TIGR03411 urea_trans_UrtD urea 77.5 1.3 2.9E-05 33.8 1.4 23 93-115 23-45 (242)
285 PRK14263 phosphate ABC transpo 77.5 1.3 2.7E-05 34.8 1.3 24 92-115 28-51 (261)
286 PRK14259 phosphate ABC transpo 77.4 1.3 2.8E-05 34.8 1.4 24 92-115 33-56 (269)
287 PRK06315 type III secretion sy 77.4 2 4.3E-05 37.2 2.6 34 87-121 152-186 (442)
288 PRK06893 DNA replication initi 77.3 1.4 3E-05 34.0 1.4 18 101-118 42-59 (229)
289 PRK14237 phosphate transporter 77.2 1.3 2.8E-05 34.7 1.3 23 93-115 41-63 (267)
290 cd03294 ABC_Pro_Gly_Bertaine T 77.1 1.3 2.9E-05 34.7 1.4 24 92-115 44-67 (269)
291 PRK14254 phosphate ABC transpo 77.1 1.3 2.9E-05 35.2 1.4 23 93-115 60-82 (285)
292 PRK13546 teichoic acids export 77.0 1.3 2.9E-05 34.9 1.4 24 92-115 44-67 (264)
293 PRK10619 histidine/lysine/argi 77.0 1.4 3E-05 34.2 1.4 24 93-116 26-49 (257)
294 PRK14249 phosphate ABC transpo 77.0 1.4 3E-05 34.0 1.4 23 93-115 25-47 (251)
295 cd03237 ABC_RNaseL_inhibitor_d 76.9 2 4.3E-05 33.6 2.3 22 94-115 21-42 (246)
296 PRK13645 cbiO cobalt transport 76.8 1.2 2.7E-05 35.3 1.1 23 93-115 32-54 (289)
297 TIGR00635 ruvB Holliday juncti 76.8 1.4 3E-05 34.8 1.4 20 98-117 30-49 (305)
298 COG3598 RepA RecA-family ATPas 76.7 1.8 3.9E-05 36.8 2.1 24 98-121 89-112 (402)
299 PRK14275 phosphate ABC transpo 76.6 1.4 3E-05 35.1 1.3 24 92-115 59-82 (286)
300 cd03234 ABCG_White The White s 76.6 1.4 3E-05 33.5 1.3 24 92-115 27-50 (226)
301 PF05496 RuvB_N: Holliday junc 76.5 1.5 3.3E-05 35.0 1.5 18 99-116 51-68 (233)
302 PRK14252 phosphate ABC transpo 76.5 1.4 3E-05 34.4 1.3 23 93-115 37-59 (265)
303 TIGR01288 nodI ATP-binding ABC 76.5 1.4 3.1E-05 35.2 1.4 23 93-115 25-47 (303)
304 cd03239 ABC_SMC_head The struc 76.5 2.3 4.9E-05 31.7 2.4 19 100-119 24-42 (178)
305 COG1484 DnaC DNA replication p 76.3 1.5 3.3E-05 34.7 1.5 21 98-118 105-125 (254)
306 PRK13647 cbiO cobalt transport 76.3 1.3 2.9E-05 34.9 1.2 23 93-115 26-48 (274)
307 PF05673 DUF815: Protein of un 76.3 1.8 3.8E-05 34.9 1.9 22 96-117 50-71 (249)
308 PRK08181 transposase; Validate 76.3 1.5 3.3E-05 35.2 1.5 22 97-118 105-126 (269)
309 PRK08506 replicative DNA helic 76.3 2.6 5.5E-05 36.4 3.0 28 94-121 188-215 (472)
310 PRK13648 cbiO cobalt transport 76.2 1.4 3.1E-05 34.5 1.3 23 93-115 30-52 (269)
311 PRK09165 replicative DNA helic 76.2 2.5 5.5E-05 36.7 3.0 28 94-121 213-240 (497)
312 cd03233 ABC_PDR_domain1 The pl 76.2 1.4 3E-05 33.1 1.2 23 93-115 28-50 (202)
313 TIGR01188 drrA daunorubicin re 76.1 1.5 3.3E-05 35.0 1.5 23 93-115 14-36 (302)
314 PRK13652 cbiO cobalt transport 76.1 1.4 3E-05 34.8 1.2 23 93-115 25-47 (277)
315 COG1224 TIP49 DNA helicase TIP 76.0 1.8 4E-05 37.2 2.0 22 96-117 63-84 (450)
316 PRK07721 fliI flagellum-specif 75.9 2.2 4.9E-05 36.7 2.5 27 95-122 155-181 (438)
317 PRK13636 cbiO cobalt transport 75.6 1.5 3.3E-05 34.7 1.3 23 93-115 27-49 (283)
318 PRK14961 DNA polymerase III su 75.6 1.5 3.3E-05 36.2 1.4 19 99-117 39-57 (363)
319 cd03290 ABCC_SUR1_N The SUR do 75.6 1.5 3.3E-05 33.0 1.3 24 92-115 21-44 (218)
320 PRK13641 cbiO cobalt transport 75.4 1.4 3.1E-05 35.0 1.1 23 93-115 28-50 (287)
321 TIGR02640 gas_vesic_GvpN gas v 75.4 1.9 4.1E-05 34.0 1.8 21 98-118 21-41 (262)
322 PRK09183 transposase/IS protei 75.3 2 4.3E-05 34.1 1.9 23 96-118 100-122 (259)
323 PRK06526 transposase; Provisio 75.3 2.5 5.4E-05 33.5 2.5 23 97-119 97-119 (254)
324 cd03297 ABC_ModC_molybdenum_tr 75.2 1.6 3.4E-05 32.8 1.3 26 90-116 16-41 (214)
325 PRK13635 cbiO cobalt transport 75.2 1.5 3.3E-05 34.7 1.2 23 93-115 28-50 (279)
326 PRK14258 phosphate ABC transpo 75.1 1.7 3.6E-05 33.9 1.4 24 92-115 27-50 (261)
327 PF00308 Bac_DnaA: Bacterial d 75.1 2.2 4.8E-05 32.8 2.1 21 100-121 36-56 (219)
328 PTZ00361 26 proteosome regulat 75.0 2.2 4.8E-05 36.7 2.3 24 93-116 212-235 (438)
329 PRK06067 flagellar accessory p 75.0 3.1 6.8E-05 31.7 2.9 29 93-121 20-48 (234)
330 cd03288 ABCC_SUR2 The SUR doma 74.9 1.5 3.3E-05 34.1 1.2 23 93-115 42-64 (257)
331 CHL00181 cbbX CbbX; Provisiona 74.8 2 4.3E-05 34.7 1.8 21 98-118 59-79 (287)
332 PRK03695 vitamin B12-transport 74.8 1.6 3.5E-05 33.8 1.3 23 93-115 17-39 (248)
333 PTZ00133 ADP-ribosylation fact 74.8 2.2 4.7E-05 31.4 1.9 22 98-119 17-38 (182)
334 PRK12402 replication factor C 74.7 1.7 3.7E-05 34.4 1.4 17 101-117 39-55 (337)
335 PRK08727 hypothetical protein; 74.7 1.7 3.8E-05 33.6 1.4 18 100-117 43-60 (233)
336 PRK10938 putative molybdenum t 74.7 1.7 3.8E-05 36.9 1.5 24 92-115 23-46 (490)
337 cd03291 ABCC_CFTR1 The CFTR su 74.6 1.7 3.6E-05 34.9 1.3 25 92-116 57-81 (282)
338 PF13245 AAA_19: Part of AAA d 74.6 3.3 7.2E-05 26.9 2.6 21 101-121 13-33 (76)
339 PRK05688 fliI flagellum-specif 74.5 1.8 4E-05 37.5 1.7 45 76-121 143-190 (451)
340 PRK00080 ruvB Holliday junctio 74.5 2 4.4E-05 34.7 1.8 19 98-116 51-69 (328)
341 PHA02562 46 endonuclease subun 74.3 2.4 5.2E-05 36.4 2.3 22 97-119 26-47 (562)
342 PRK14246 phosphate ABC transpo 74.2 1.7 3.7E-05 33.9 1.3 23 93-115 31-53 (257)
343 cd01878 HflX HflX subfamily. 74.1 2.5 5.5E-05 31.1 2.1 23 98-121 41-63 (204)
344 TIGR02880 cbbX_cfxQ probable R 74.0 2.2 4.7E-05 34.2 1.8 19 98-116 58-76 (284)
345 PRK06835 DNA replication prote 73.9 1.9 4.1E-05 35.6 1.5 20 98-117 183-202 (329)
346 PRK13643 cbiO cobalt transport 73.8 1.6 3.5E-05 34.7 1.1 24 92-115 26-49 (288)
347 PRK14264 phosphate ABC transpo 73.8 1.8 3.9E-05 34.8 1.3 24 92-115 65-88 (305)
348 TIGR03269 met_CoM_red_A2 methy 73.7 1.8 3.9E-05 37.1 1.4 24 92-115 20-43 (520)
349 PRK13639 cbiO cobalt transport 73.6 1.7 3.7E-05 34.2 1.2 23 93-115 23-45 (275)
350 PRK13646 cbiO cobalt transport 73.6 1.7 3.7E-05 34.5 1.2 23 93-115 28-50 (286)
351 PRK11147 ABC transporter ATPas 73.4 1.8 3.9E-05 38.4 1.3 24 92-115 23-46 (635)
352 PRK13651 cobalt transporter AT 73.4 1.7 3.7E-05 35.2 1.1 22 94-115 29-50 (305)
353 TIGR00150 HI0065_YjeE ATPase, 73.4 2.7 5.9E-05 30.5 2.1 22 96-117 20-41 (133)
354 PRK13640 cbiO cobalt transport 73.4 1.8 3.8E-05 34.3 1.2 24 92-115 27-50 (282)
355 PRK11176 lipid transporter ATP 73.3 2 4.3E-05 37.1 1.6 21 95-115 366-386 (582)
356 KOG1225|consensus 73.2 3.2 7E-05 36.8 2.8 42 17-65 300-343 (525)
357 cd00879 Sar1 Sar1 subfamily. 73.2 2.2 4.7E-05 30.9 1.6 20 98-117 19-38 (190)
358 PRK13644 cbiO cobalt transport 73.1 1.8 3.8E-05 34.2 1.1 23 93-115 23-45 (274)
359 TIGR02239 recomb_RAD51 DNA rep 72.9 3.4 7.4E-05 33.8 2.8 30 92-121 90-119 (316)
360 PRK10636 putative ABC transpor 72.7 1.9 4.1E-05 38.3 1.4 23 93-115 22-44 (638)
361 PRK13650 cbiO cobalt transport 72.7 1.8 4E-05 34.2 1.1 23 93-115 28-50 (279)
362 PRK06620 hypothetical protein; 72.5 2.1 4.6E-05 32.9 1.4 18 99-116 45-62 (214)
363 TIGR02688 conserved hypothetic 72.5 2.7 5.8E-05 36.6 2.1 22 97-118 208-229 (449)
364 PRK04192 V-type ATP synthase s 72.4 3.2 6.9E-05 37.3 2.7 30 87-118 215-247 (586)
365 COG4167 SapF ABC-type antimicr 72.4 2 4.4E-05 34.2 1.3 24 93-116 34-57 (267)
366 PF13086 AAA_11: AAA domain; P 72.3 3.2 6.9E-05 30.3 2.3 21 101-121 20-40 (236)
367 PRK15064 ABC transporter ATP-b 72.3 2 4.3E-05 37.0 1.4 24 92-115 21-44 (530)
368 PRK05636 replicative DNA helic 72.2 3.6 7.9E-05 36.0 2.9 28 94-121 261-288 (505)
369 COG1493 HprK Serine kinase of 72.0 2.8 6E-05 34.8 2.0 22 98-119 145-166 (308)
370 PRK13642 cbiO cobalt transport 71.9 2 4.4E-05 33.8 1.2 23 94-116 29-51 (277)
371 PRK14958 DNA polymerase III su 71.9 2.1 4.6E-05 37.4 1.4 20 98-117 38-57 (509)
372 PRK11819 putative ABC transpor 71.8 2.1 4.6E-05 37.2 1.4 24 92-115 27-50 (556)
373 PRK11153 metN DL-methionine tr 71.7 2 4.4E-05 35.2 1.2 23 93-115 26-48 (343)
374 TIGR03015 pepcterm_ATPase puta 71.7 2.3 4.9E-05 32.7 1.4 19 100-118 45-63 (269)
375 PRK13637 cbiO cobalt transport 71.6 2 4.3E-05 34.2 1.1 23 93-115 28-50 (287)
376 TIGR02204 MsbA_rel ABC transpo 71.6 2.1 4.6E-05 36.8 1.4 23 93-115 361-383 (576)
377 cd00820 PEPCK_HprK Phosphoenol 71.6 2.4 5.1E-05 29.8 1.4 22 96-117 13-34 (107)
378 PRK13634 cbiO cobalt transport 71.5 2 4.3E-05 34.3 1.1 23 93-115 28-50 (290)
379 COG0488 Uup ATPase components 71.4 2.6 5.7E-05 37.2 1.9 26 90-115 21-46 (530)
380 PRK14956 DNA polymerase III su 71.3 2.2 4.9E-05 37.3 1.4 19 99-117 41-59 (484)
381 PLN00223 ADP-ribosylation fact 71.1 2.6 5.6E-05 31.0 1.6 20 99-118 18-37 (181)
382 PRK15064 ABC transporter ATP-b 71.1 2.2 4.7E-05 36.7 1.3 24 92-115 339-362 (530)
383 TIGR02868 CydC thiol reductant 70.9 2.3 5E-05 36.4 1.4 23 93-115 356-378 (529)
384 TIGR03719 ABC_ABC_ChvD ATP-bin 70.8 2.4 5.3E-05 36.7 1.6 24 92-115 25-48 (552)
385 PLN03025 replication factor C 70.7 2.4 5.3E-05 34.2 1.4 17 101-117 37-53 (319)
386 PRK05595 replicative DNA helic 70.7 4.3 9.3E-05 34.5 3.0 28 94-121 197-224 (444)
387 PRK13633 cobalt transporter AT 70.7 2.3 5E-05 33.6 1.3 24 92-115 30-53 (280)
388 PLN03073 ABC transporter F fam 70.2 2.3 5E-05 38.7 1.3 25 91-115 196-220 (718)
389 COG0419 SbcC ATPase involved i 70.2 2.8 6.1E-05 38.8 1.9 21 98-119 25-45 (908)
390 PRK08006 replicative DNA helic 70.1 4.3 9.3E-05 35.1 2.9 28 94-121 220-247 (471)
391 PLN03186 DNA repair protein RA 69.9 4.3 9.4E-05 33.8 2.8 30 92-121 117-146 (342)
392 PRK06904 replicative DNA helic 69.8 4.4 9.6E-05 35.0 2.9 28 94-121 217-244 (472)
393 PF00053 Laminin_EGF: Laminin 69.8 4.7 0.0001 23.7 2.2 22 40-64 12-33 (49)
394 PRK13631 cbiO cobalt transport 69.7 2.4 5.2E-05 34.6 1.2 22 94-115 48-69 (320)
395 PRK11174 cysteine/glutathione 69.7 2.4 5.1E-05 36.8 1.2 23 93-115 371-393 (588)
396 COG1222 RPT1 ATP-dependent 26S 69.6 3.4 7.4E-05 35.4 2.1 33 89-122 176-208 (406)
397 TIGR03689 pup_AAA proteasome A 69.5 3.3 7.2E-05 36.5 2.1 23 93-115 211-233 (512)
398 PRK01156 chromosome segregatio 69.5 3 6.5E-05 38.2 1.9 20 99-119 24-43 (895)
399 TIGR02203 MsbA_lipidA lipid A 69.2 2.8 6E-05 36.1 1.6 23 93-115 353-375 (571)
400 PTZ00035 Rad51 protein; Provis 69.1 5.1 0.00011 33.1 3.1 30 92-121 112-141 (337)
401 PRK13342 recombination factor 69.0 2.7 5.9E-05 35.3 1.4 18 100-117 38-55 (413)
402 PRK12422 chromosomal replicati 69.0 3.3 7.2E-05 35.5 2.0 21 100-121 143-163 (445)
403 PRK15134 microcin C ABC transp 69.0 2.6 5.6E-05 36.3 1.3 23 93-115 30-52 (529)
404 KOG1214|consensus 68.9 8.1 0.00018 36.6 4.5 19 40-59 800-819 (1289)
405 PRK14964 DNA polymerase III su 68.9 2.8 6.1E-05 36.7 1.5 19 98-116 35-53 (491)
406 TIGR00679 hpr-ser Hpr(Ser) kin 68.6 3.6 7.9E-05 34.0 2.1 25 96-120 144-168 (304)
407 PRK08760 replicative DNA helic 68.6 4.9 0.00011 34.7 3.0 28 94-121 225-252 (476)
408 PRK00454 engB GTP-binding prot 68.5 3.2 6.9E-05 30.0 1.5 23 98-121 24-46 (196)
409 COG0411 LivG ABC-type branched 68.5 2.3 4.9E-05 34.4 0.8 21 94-114 26-46 (250)
410 TIGR01243 CDC48 AAA family ATP 68.5 3.8 8.3E-05 37.0 2.3 25 92-116 206-230 (733)
411 PTZ00311 phosphoenolpyruvate c 68.3 2.4 5.2E-05 37.9 1.0 22 97-118 255-276 (561)
412 PRK11144 modC molybdate transp 68.1 2.7 5.8E-05 34.6 1.2 25 91-115 17-41 (352)
413 PF06068 TIP49: TIP49 C-termin 68.1 4 8.6E-05 35.0 2.2 22 97-118 49-70 (398)
414 COG1132 MdlB ABC-type multidru 68.1 3 6.5E-05 36.1 1.5 21 95-115 352-372 (567)
415 PRK09344 phosphoenolpyruvate c 67.9 2.2 4.7E-05 37.8 0.6 20 98-117 225-244 (526)
416 COG2812 DnaX DNA polymerase II 67.7 2.1 4.5E-05 37.8 0.5 16 101-116 41-56 (515)
417 PF12946 EGF_MSP1_1: MSP1 EGF 67.6 5.9 0.00013 23.0 2.2 28 29-58 2-30 (37)
418 TIGR00224 pckA phosphoenolpyru 67.6 3.3 7.1E-05 36.8 1.7 23 96-118 231-253 (532)
419 PRK10938 putative molybdenum t 67.5 3.2 6.9E-05 35.3 1.6 24 92-115 280-303 (490)
420 PRK08840 replicative DNA helic 67.4 5.3 0.00012 34.5 2.9 28 94-121 213-240 (464)
421 PF08423 Rad51: Rad51; InterP 67.4 5.4 0.00012 31.6 2.8 30 92-121 32-61 (256)
422 TIGR02633 xylG D-xylose ABC tr 67.3 2.9 6.3E-05 35.6 1.3 24 92-115 21-44 (500)
423 cd03289 ABCC_CFTR2 The CFTR su 67.2 3 6.5E-05 33.3 1.3 23 93-115 25-47 (275)
424 TIGR03598 GTPase_YsxC ribosome 67.2 3.5 7.6E-05 29.9 1.6 24 98-122 18-41 (179)
425 cd00484 PEPCK_ATP Phosphoenolp 67.0 2.6 5.7E-05 37.2 1.0 22 97-118 208-229 (508)
426 PRK14960 DNA polymerase III su 66.9 3.1 6.7E-05 38.1 1.4 19 98-116 37-55 (702)
427 PRK07004 replicative DNA helic 66.9 5.6 0.00012 34.2 3.0 28 94-121 209-236 (460)
428 PRK14962 DNA polymerase III su 66.9 3.1 6.8E-05 36.0 1.4 18 99-116 37-54 (472)
429 PRK09473 oppD oligopeptide tra 66.8 2.8 6.1E-05 34.3 1.1 24 93-116 37-60 (330)
430 PRK06645 DNA polymerase III su 66.7 3.2 6.9E-05 36.4 1.4 19 98-116 43-61 (507)
431 PRK15093 antimicrobial peptide 66.7 3.3 7.2E-05 33.7 1.5 24 93-116 28-51 (330)
432 PRK13537 nodulation ABC transp 66.6 3.2 7E-05 33.4 1.4 23 93-115 28-50 (306)
433 PRK11160 cysteine/glutathione 66.6 3.4 7.4E-05 36.0 1.6 24 92-115 360-383 (574)
434 PF14532 Sigma54_activ_2: Sigm 66.5 3.7 8E-05 28.8 1.5 18 99-116 22-39 (138)
435 PRK13549 xylose transporter AT 66.4 2.9 6.2E-05 35.8 1.1 23 93-115 26-48 (506)
436 cd03276 ABC_SMC6_euk Eukaryoti 66.4 4.2 9.1E-05 30.7 1.9 20 100-120 23-42 (198)
437 cd03278 ABC_SMC_barmotin Barmo 66.4 4.2 9.1E-05 30.7 1.9 20 95-115 20-39 (197)
438 PRK09302 circadian clock prote 66.3 5.8 0.00013 34.1 2.9 29 93-121 268-296 (509)
439 PF02562 PhoH: PhoH-like prote 66.2 5.3 0.00012 31.0 2.5 23 99-121 20-42 (205)
440 COG1119 ModF ABC-type molybden 66.2 4.2 9.2E-05 33.0 1.9 28 87-115 47-74 (257)
441 COG1373 Predicted ATPase (AAA+ 66.2 4.1 8.9E-05 34.4 2.0 21 100-121 39-59 (398)
442 TIGR02142 modC_ABC molybdenum 66.1 3.1 6.7E-05 34.2 1.2 25 91-115 16-40 (354)
443 PRK00411 cdc6 cell division co 66.1 5 0.00011 32.7 2.4 22 98-119 55-76 (394)
444 PF12955 DUF3844: Domain of un 66.0 6.7 0.00015 27.6 2.7 34 32-65 12-62 (103)
445 PRK10636 putative ABC transpor 66.0 3.3 7.1E-05 36.9 1.4 24 92-115 332-355 (638)
446 PRK09099 type III secretion sy 65.9 3.9 8.5E-05 35.3 1.8 43 73-115 135-180 (441)
447 PRK02224 chromosome segregatio 65.9 4.1 8.9E-05 37.1 2.0 22 98-120 23-44 (880)
448 TIGR01193 bacteriocin_ABC ABC- 65.8 3.3 7.1E-05 36.9 1.4 23 93-115 495-517 (708)
449 TIGR03522 GldA_ABC_ATP gliding 65.7 3 6.4E-05 33.4 1.0 23 93-115 23-45 (301)
450 PRK11147 ABC transporter ATPas 65.7 3.2 6.9E-05 36.8 1.3 24 92-115 339-362 (635)
451 PLN00023 GTP-binding protein; 65.6 3.6 7.9E-05 34.4 1.5 21 98-118 21-41 (334)
452 cd02019 NK Nucleoside/nucleoti 65.5 4.1 8.9E-05 25.5 1.4 16 102-117 3-18 (69)
453 COG1122 CbiO ABC-type cobalt t 65.5 3.5 7.5E-05 32.6 1.3 22 95-116 27-48 (235)
454 PRK10762 D-ribose transporter 65.4 3.4 7.3E-05 35.3 1.3 23 93-115 25-47 (501)
455 PRK14087 dnaA chromosomal repl 65.4 4.4 9.6E-05 34.7 2.1 22 99-121 142-163 (450)
456 PRK13536 nodulation factor exp 65.3 3.4 7.3E-05 34.1 1.3 23 93-115 62-84 (340)
457 PHA02542 41 41 helicase; Provi 65.2 5.9 0.00013 34.4 2.8 29 93-121 185-213 (473)
458 PRK00149 dnaA chromosomal repl 65.0 3.6 7.8E-05 34.9 1.4 18 99-116 149-166 (450)
459 PRK14257 phosphate ABC transpo 65.0 3.4 7.5E-05 33.8 1.3 22 94-115 104-125 (329)
460 TIGR01842 type_I_sec_PrtD type 65.0 3.5 7.6E-05 35.5 1.4 23 93-115 339-361 (544)
461 PRK13549 xylose transporter AT 64.9 3.7 8E-05 35.1 1.5 24 92-115 282-305 (506)
462 TIGR02857 CydD thiol reductant 64.9 3.8 8.3E-05 35.0 1.5 22 94-115 344-365 (529)
463 smart00487 DEXDc DEAD-like hel 64.8 6.2 0.00014 27.4 2.4 23 99-121 25-47 (201)
464 PRK15439 autoinducer 2 ABC tra 64.7 3.6 7.8E-05 35.3 1.4 23 93-115 284-306 (510)
465 COG2274 SunT ABC-type bacterio 64.7 4 8.6E-05 37.3 1.7 21 95-115 496-516 (709)
466 PRK09700 D-allose transporter 64.5 3.7 8E-05 35.1 1.4 24 92-115 25-48 (510)
467 COG4987 CydC ABC-type transpor 64.4 4.7 0.0001 36.1 2.0 24 92-115 358-381 (573)
468 PRK10789 putative multidrug tr 64.3 3.9 8.5E-05 35.5 1.6 22 94-115 337-358 (569)
469 PRK15439 autoinducer 2 ABC tra 64.3 3.4 7.4E-05 35.5 1.2 22 94-115 33-54 (510)
470 COG1134 TagH ABC-type polysacc 64.3 3.6 7.9E-05 33.2 1.2 23 93-115 48-70 (249)
471 CHL00081 chlI Mg-protoporyphyr 64.2 3.8 8.3E-05 34.3 1.4 18 99-116 39-56 (350)
472 cd03236 ABC_RNaseL_inhibitor_d 64.2 5.2 0.00011 31.5 2.1 21 95-115 23-43 (255)
473 PF00154 RecA: recA bacterial 64.2 5.5 0.00012 33.1 2.3 31 93-123 48-79 (322)
474 COG2255 RuvB Holliday junction 64.1 3.8 8.2E-05 34.2 1.3 19 98-116 52-70 (332)
475 CHL00195 ycf46 Ycf46; Provisio 64.1 5.3 0.00011 34.9 2.3 23 93-115 254-276 (489)
476 COG3638 ABC-type phosphate/pho 64.0 4 8.7E-05 33.1 1.4 20 96-115 28-47 (258)
477 PRK10522 multidrug transporter 63.9 3.8 8.3E-05 35.4 1.4 22 94-115 345-366 (547)
478 TIGR01241 FtsH_fam ATP-depende 63.8 5.5 0.00012 34.2 2.3 22 95-116 85-106 (495)
479 PRK09519 recA DNA recombinatio 63.7 6.2 0.00014 36.6 2.8 29 93-121 55-83 (790)
480 PRK11288 araG L-arabinose tran 63.7 3.8 8.3E-05 35.0 1.3 23 93-115 274-296 (501)
481 PRK10261 glutathione transport 63.6 3.8 8.3E-05 36.3 1.3 25 92-116 36-60 (623)
482 PRK06749 replicative DNA helic 63.5 7.3 0.00016 33.3 3.0 28 94-121 182-209 (428)
483 PRK14951 DNA polymerase III su 63.5 4.1 8.9E-05 36.7 1.5 21 98-118 38-58 (618)
484 COG4178 ABC-type uncharacteriz 63.5 4.3 9.3E-05 36.6 1.6 26 90-115 411-436 (604)
485 PF14516 AAA_35: AAA-like doma 63.3 5.9 0.00013 32.4 2.4 24 96-119 29-52 (331)
486 PRK09700 D-allose transporter 63.3 3.9 8.6E-05 34.9 1.4 23 93-115 284-306 (510)
487 TIGR03719 ABC_ABC_ChvD ATP-bin 63.2 4 8.6E-05 35.4 1.4 24 92-115 342-365 (552)
488 cd03243 ABC_MutS_homologs The 63.2 5.2 0.00011 29.9 1.9 21 95-115 26-46 (202)
489 PRK13657 cyclic beta-1,2-gluca 63.0 4.1 8.9E-05 35.4 1.4 26 93-119 356-381 (588)
490 PRK15134 microcin C ABC transp 63.0 4.3 9.4E-05 34.9 1.6 24 92-115 306-329 (529)
491 TIGR03269 met_CoM_red_A2 methy 63.0 4 8.8E-05 35.0 1.4 24 92-115 304-327 (520)
492 PF12775 AAA_7: P-loop contain 63.0 5.6 0.00012 31.8 2.1 22 98-119 33-54 (272)
493 TIGR03797 NHPM_micro_ABC2 NHPM 62.9 3.9 8.5E-05 36.3 1.3 23 93-115 474-496 (686)
494 TIGR02928 orc1/cdc6 family rep 62.8 6.3 0.00014 31.7 2.4 21 98-118 40-60 (365)
495 PRK10762 D-ribose transporter 62.7 4.1 8.9E-05 34.8 1.3 23 93-115 273-295 (501)
496 cd03275 ABC_SMC1_euk Eukaryoti 62.6 5.4 0.00012 30.9 1.9 20 99-119 23-42 (247)
497 PRK11022 dppD dipeptide transp 62.6 4 8.7E-05 33.3 1.2 24 93-116 28-51 (326)
498 PRK10982 galactose/methyl gala 62.6 4.2 9.1E-05 34.6 1.4 24 92-115 18-41 (491)
499 PLN03073 ABC transporter F fam 62.6 3.9 8.5E-05 37.2 1.2 24 92-115 529-552 (718)
500 PRK11000 maltose/maltodextrin 62.5 4 8.7E-05 33.9 1.2 23 93-115 24-46 (369)
No 1
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.36 E-value=2.1e-13 Score=116.03 Aligned_cols=52 Identities=56% Similarity=0.656 Sum_probs=46.5
Q ss_pred eccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 71 RAISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 71 ~~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.+|++..|++++.|+. +.-++. |+| ||||||+||||||||+||+|||||||+
T Consensus 132 ~Apgv~~RksV~ePlqTGikaIDa--miPIGRGQRELIIGDRQTGKTaIAidtIiNQk~ 188 (504)
T COG0056 132 KAPGVMDRKSVNEPLQTGIKAIDA--LIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG 188 (504)
T ss_pred ccCceecccccCchhhhhhHHHhh--hcccCCCceEEEeccCcCCcchhhHHHHHhccc
Confidence 4688899999998887 666777 888 999999999999999999999999984
No 2
>PTZ00185 ATPase alpha subunit; Provisional
Probab=98.62 E-value=2.2e-08 Score=87.31 Aligned_cols=50 Identities=48% Similarity=0.603 Sum_probs=42.7
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
++.+..|..+..++. +.-++. |.| |||++||||+|+|||+||||+||||+
T Consensus 160 ap~~~~R~~v~epL~TGIkaID~--LiPIGRGQR~lIfGd~GtGKTtLAld~IinQ~ 214 (574)
T PTZ00185 160 APNIVSRSPVNYNLLTGFKAVDT--MIPIGRGQRELIVGDRQTGKTSIAVSTIINQV 214 (574)
T ss_pred CcChhhcCCCCCcCcCCceeeec--cccccCCCEEEeecCCCCChHHHHHHHHHhhh
Confidence 456667777776665 888888 666 99999999999999999999999997
No 3
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=98.62 E-value=3.1e-08 Score=55.65 Aligned_cols=31 Identities=35% Similarity=0.897 Sum_probs=27.6
Q ss_pred CCCCCCCCCCeeeeCC-CCceEEecCCCeeccc
Q psy10055 30 EEHDPCKHGGICISTD-SGPICECRNLDFEGIY 61 (124)
Q Consensus 30 ~~~nPC~ngG~C~~~~-~~y~C~C~~tg~~G~~ 61 (124)
-.++||+|+|+|++.. ++|.|.|++ ||+|++
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~-G~~G~~ 32 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPP-GYTGKR 32 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBT-TEESTT
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCC-CCccCC
Confidence 0588999999999988 899999999 999974
No 4
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=98.51 E-value=6e-08 Score=84.03 Aligned_cols=51 Identities=47% Similarity=0.552 Sum_probs=41.8
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
++.+..|..+..++. +.-++. |.| |||++||||+|+|||++|+|+|+||++
T Consensus 114 ap~~~~R~~v~epL~TGIkaID~--l~pigrGQR~~Ifg~~gtGKT~lal~~I~~q~~ 169 (507)
T PRK07165 114 AHGLMTVKTLNEQLYTGIIAIDL--LIPIGKGQRELIIGDRQTGKTHIALNTIINQKN 169 (507)
T ss_pred CCCchhhCCCCceeecCchhhhh--cCCcccCCEEEeecCCCCCccHHHHHHHHHhcC
Confidence 455566666666655 777777 666 999999999999999999999999974
No 5
>KOG1353|consensus
Probab=98.51 E-value=2e-08 Score=81.31 Aligned_cols=36 Identities=69% Similarity=0.995 Sum_probs=32.2
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
..+.+. ++| +||||+||||++|||+||+|||+|||.
T Consensus 135 ~KAvds--lVpigRgqrELiIgdRqTGkTsla~dTI~nqk~ 173 (340)
T KOG1353|consen 135 LKAVDS--LVPIGRGQRELIIGDRQTGKTSLAIDTILNQKR 173 (340)
T ss_pred hhHhhc--eeeeccCceEEEeccccCCceeeeehhhhhhhh
Confidence 566666 777 999999999999999999999999983
No 6
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=98.46 E-value=1.2e-07 Score=81.76 Aligned_cols=51 Identities=53% Similarity=0.578 Sum_probs=42.3
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.|.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||++
T Consensus 112 ap~~~~R~~v~epl~TGI~aID~--l~pigrGQR~~I~g~~g~GKt~Lal~~I~~q~~ 167 (485)
T CHL00059 112 APGIISRRSVYEPLQTGLIAIDS--MIPIGRGQRELIIGDRQTGKTAVATDTILNQKG 167 (485)
T ss_pred CCCchhccCCCcccccCceeecc--ccccccCCEEEeecCCCCCHHHHHHHHHHhccc
Confidence 456666777766665 788888 656 999999999999999999999999974
No 7
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=98.39 E-value=3.7e-07 Score=51.46 Aligned_cols=36 Identities=39% Similarity=1.046 Sum_probs=32.2
Q ss_pred cCCCCCC-CCCCCCCeeeeCCCCceEEecCCCee-ccccc
Q psy10055 26 LDPCEEH-DPCKHGGICISTDSGPICECRNLDFE-GIYCE 63 (124)
Q Consensus 26 ~d~C~~~-nPC~ngG~C~~~~~~y~C~C~~tg~~-G~~Ce 63 (124)
+++| .. +||.++++|++..++|.|.|++ +|. |..|+
T Consensus 2 ~~~C-~~~~~C~~~~~C~~~~g~~~C~C~~-g~~~g~~C~ 39 (39)
T smart00179 2 IDEC-ASGNPCQNGGTCVNTVGSYRCECPP-GYTDGRNCE 39 (39)
T ss_pred cccC-cCCCCcCCCCEeECCCCCeEeECCC-CCccCCcCC
Confidence 5788 56 8999999999999999999999 999 88874
No 8
>KOG1219|consensus
Probab=98.37 E-value=2.7e-07 Score=89.95 Aligned_cols=64 Identities=28% Similarity=0.584 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCCeeeeCC-CCceEEecCCCeeccccccCccceeeccceeeccccccceeeEeccC
Q psy10055 27 DPCEEHDPCKHGGICISTD-SGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSRKKLRLIECEDG 92 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~-~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~r~~~~~~~~~~C~~~ 92 (124)
+.| +.+||||||+|...+ ++|.|.||+ .|+|.+||.+...|..+||+....|......+.|.+-
T Consensus 3865 d~C-~~npCqhgG~C~~~~~ggy~CkCps-qysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~ 3929 (4289)
T KOG1219|consen 3865 DPC-NDNPCQHGGTCISQPKGGYKCKCPS-QYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCP 3929 (4289)
T ss_pred ccc-ccCcccCCCEecCCCCCceEEeCcc-cccCcccccccccccCCCCCCCCEEEecCCCeeEeCC
Confidence 556 466666666665444 456666666 6666666666666655666555555544444333333
No 9
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=98.37 E-value=2.9e-07 Score=79.69 Aligned_cols=51 Identities=49% Similarity=0.606 Sum_probs=41.7
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.|.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||++
T Consensus 133 ~p~~~~R~~v~epl~TGI~aID~--l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~~ 188 (497)
T TIGR03324 133 APPIMDRAPVTVPLQTGLKVIDA--LIPIGRGQRELILGDRQTGKTAIAIDTILNQKG 188 (497)
T ss_pred CcCccccCCCCchhhcCCEEEec--cCCcccCCEEEeecCCCCCHHHHHHHHHHHhcC
Confidence 345566666666555 788888 656 999999999999999999999999974
No 10
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=98.29 E-value=4.8e-07 Score=78.43 Aligned_cols=51 Identities=53% Similarity=0.629 Sum_probs=41.5
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.|.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||+.
T Consensus 133 ap~~~~R~~v~epl~TGIkaID~--l~pigrGQR~~I~g~~g~GKt~Lal~~i~~~~~ 188 (502)
T PRK13343 133 APAIIERDFVTEPLQTGIKVVDA--LIPIGRGQRELIIGDRQTGKTAIAIDAIINQKD 188 (502)
T ss_pred CcChhhcCCCCcccccCCceecc--ccccccCCEEEeeCCCCCCccHHHHHHHHhhcC
Confidence 455556666666655 777777 656 999999999999999999999999974
No 11
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=98.22 E-value=1.6e-06 Score=48.02 Aligned_cols=36 Identities=36% Similarity=1.015 Sum_probs=31.9
Q ss_pred cCCCCCC-CCCCCCCeeeeCCCCceEEecCCCeeccccc
Q psy10055 26 LDPCEEH-DPCKHGGICISTDSGPICECRNLDFEGIYCE 63 (124)
Q Consensus 26 ~d~C~~~-nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce 63 (124)
+++| .. +||.++++|.+..++|.|.|++ +|.|..|+
T Consensus 2 ~~~C-~~~~~C~~~~~C~~~~~~~~C~C~~-g~~g~~C~ 38 (38)
T cd00054 2 IDEC-ASGNPCQNGGTCVNTVGSYRCSCPP-GYTGRNCE 38 (38)
T ss_pred cccC-CCCCCcCCCCEeECCCCCeEeECCC-CCcCCcCC
Confidence 5778 56 7999999999999999999999 99998874
No 12
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=98.15 E-value=1.6e-06 Score=75.22 Aligned_cols=51 Identities=59% Similarity=0.664 Sum_probs=40.9
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.|.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||++
T Consensus 132 ~p~~~~R~~i~~pl~TGi~aID~--l~pigrGQr~~I~g~~g~GKt~Lal~~i~~~~~ 187 (501)
T TIGR00962 132 APGVMERKSVHEPLQTGIKAIDA--MIPIGRGQRELIIGDRQTGKTAVAIDTIINQKD 187 (501)
T ss_pred CCChhhcCCcCceeccCCceeec--cCCcccCCEEEeecCCCCCccHHHHHHHHhhcC
Confidence 345566666666555 677777 555 999999999999999999999999973
No 13
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=98.12 E-value=2.3e-06 Score=74.27 Aligned_cols=51 Identities=59% Similarity=0.655 Sum_probs=40.8
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.+.+..|.....++. +.-++. |.| |||++|||++|+|||+||+|+|+||++
T Consensus 133 ~p~~~~R~~~~~~l~TGi~~ID~--l~pigrGQr~~Ifg~~g~GKt~lal~~i~~~~~ 188 (502)
T PRK09281 133 APGVIDRKSVHEPLQTGIKAIDA--MIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG 188 (502)
T ss_pred CcCccccCCccceeecCCeeeec--ccccccCcEEEeecCCCCCchHHHHHHHHHhcC
Confidence 345556666666555 777777 555 999999999999999999999999973
No 14
>KOG1219|consensus
Probab=98.12 E-value=2.8e-06 Score=83.29 Aligned_cols=70 Identities=26% Similarity=0.553 Sum_probs=61.4
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccC-ccceeeccceeeccccccceeeEeccCCCcC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV-EISVVRAISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~-~~~~~~~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
+..+| .++||.+||+|+...++|.|.||. +|+|.+||.. .++|..++|.....+.+.+..|-|.+..+..
T Consensus 3902 ~~epC-~snPC~~GgtCip~~n~f~CnC~~-gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~ 3972 (4289)
T KOG1219|consen 3902 DLEPC-ASNPCLTGGTCIPFYNGFLCNCPN-GYTGKRCEARGISECSKNVCGTGGQCINIPGSFHCNCTPGIL 3972 (4289)
T ss_pred ccccc-cCCCCCCCCEEEecCCCeeEeCCC-CccCceeecccccccccccccCCceeeccCCceEeccChhHh
Confidence 66889 699999999999999999999999 9999999998 8888888888888888888877777765554
No 15
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=97.85 E-value=2.2e-05 Score=42.62 Aligned_cols=31 Identities=35% Similarity=0.946 Sum_probs=27.8
Q ss_pred CCCCCCCCeeeeCCCCceEEecCCCeecc-ccc
Q psy10055 32 HDPCKHGGICISTDSGPICECRNLDFEGI-YCE 63 (124)
Q Consensus 32 ~nPC~ngG~C~~~~~~y~C~C~~tg~~G~-~Ce 63 (124)
.++|.++++|++..+.|.|.|+. +|.|. .|+
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~-g~~g~~~C~ 36 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPP-GYTGDRSCE 36 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCC-CCcccCCcC
Confidence 67899999999999999999999 99998 663
No 16
>smart00181 EGF Epidermal growth factor-like domain.
Probab=97.74 E-value=3.7e-05 Score=42.58 Aligned_cols=32 Identities=38% Similarity=1.014 Sum_probs=27.9
Q ss_pred CCCC-CCCCCCCeeeeCCCCceEEecCCCeec-cccc
Q psy10055 29 CEEH-DPCKHGGICISTDSGPICECRNLDFEG-IYCE 63 (124)
Q Consensus 29 C~~~-nPC~ngG~C~~~~~~y~C~C~~tg~~G-~~Ce 63 (124)
| .. +||.++ +|++..++|.|.|++ ||.| +.|+
T Consensus 2 C-~~~~~C~~~-~C~~~~~~~~C~C~~-g~~g~~~C~ 35 (35)
T smart00181 2 C-ASGGPCSNG-TCINTPGSYTCSCPP-GYTGDKRCE 35 (35)
T ss_pred C-CCcCCCCCC-EEECCCCCeEeECCC-CCccCCccC
Confidence 5 45 689999 999999999999999 9999 7774
No 17
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.69 E-value=5.4e-05 Score=44.51 Aligned_cols=33 Identities=30% Similarity=0.829 Sum_probs=28.1
Q ss_pred ccCCCCC-CCCCCCCCeeeeCCCCceEEecCCCee
Q psy10055 25 VLDPCEE-HDPCKHGGICISTDSGPICECRNLDFE 58 (124)
Q Consensus 25 ~~d~C~~-~nPC~ngG~C~~~~~~y~C~C~~tg~~ 58 (124)
++|+|.. .++|..++.|+++.++|.|.|++ ||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~-Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPP-GYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEEST-TEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCC-CcE
Confidence 4788842 33699999999999999999999 997
No 18
>KOG4289|consensus
Probab=97.52 E-value=8.4e-05 Score=71.09 Aligned_cols=68 Identities=29% Similarity=0.535 Sum_probs=49.3
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccc--eeeccceeecccccccee-eEeccCCC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEIS--VVRAISMRVRGSRKKLRL-IECEDGAG 94 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~--~~~~~~~~~r~~~~~~~~-~~C~~~~~ 94 (124)
.+|.| -++||.|+|+|..-.++|+|.|.+ +|+|.+||.+... |+...++....+++.+.. +.|.+..+
T Consensus 1238 eiDlC-Ys~pC~nng~C~srEggYtCeCrp-g~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1238 EIDLC-YSGPCGNNGRCRSREGGYTCECRP-GFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred hhHhh-hcCCCCCCCceEEecCceeEEecC-CccccceeeecccCccccceecCCCEEeecCCCceeccCCCc
Confidence 34889 799999999999999999999999 9999999987543 343445444445544333 44444433
No 19
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.50 E-value=9.3e-05 Score=59.96 Aligned_cols=47 Identities=62% Similarity=0.732 Sum_probs=35.4
Q ss_pred eeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 75 MRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 75 ~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.-|.....++. +.-++. |.| |||.+|||+.++|||+||+++|+||+
T Consensus 43 ~~~R~~i~e~L~TGI~~ID~--l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~ 94 (274)
T cd01132 43 IIPRKSVNEPLQTGIKAIDA--MIPIGRGQRELIIGDRQTGKTAIAIDTIINQK 94 (274)
T ss_pred hhhcCCcccccccCCEEeec--cCCcccCCEEEeeCCCCCCccHHHHHHHHHhc
Confidence 344444444443 566666 444 99999999999999999999999986
No 20
>KOG3516|consensus
Probab=97.49 E-value=0.00017 Score=67.73 Aligned_cols=66 Identities=23% Similarity=0.503 Sum_probs=50.8
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCcccee-----------eccceeecccc-ccceeeEecc
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVV-----------RAISMRVRGSR-KKLRLIECED 91 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~-----------~~~~~~~r~~~-~~~~~~~C~~ 91 (124)
..|.| .+|||+|||.|..+|..|.|.|..|||.|..|+...++.. ...-+...+.. ..|+.+.|..
T Consensus 544 i~drC-lPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi~e~SCeay~~~~~t~~~~~iD~DGsGpl~Pl~v~C~~ 621 (1306)
T KOG3516|consen 544 ISDRC-LPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSIYELSCEAYKNIGQTSGNFLIDSDGSGPLEPLQVYCNI 621 (1306)
T ss_pred ccccc-CCccccCCCcccccccceeEeccccccccccccCCCcchhhHHhhhhccccceEEEccCCCCcccceEEEEec
Confidence 45889 6999999999999999999999988999999998765431 12233444444 5577788884
No 21
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.48 E-value=8.9e-05 Score=60.14 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=37.4
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
++.+..|.....++. +.-++. |.| |||++|||++|+|||+|+.+ |++|+
T Consensus 40 ap~~~~R~~i~e~l~TGIkaID~--l~pig~GQR~gIfgg~GvGKt~L~~~-i~~~~ 93 (276)
T cd01135 40 PINPVARIYPEEMIQTGISAIDG--MNTLVRGQKIPIFSGSGLPHNELAAQ-IARQA 93 (276)
T ss_pred CcCchhcCCcccccccCcEeeec--ccccccCCEEEeecCCCCChhHHHHH-HHHhh
Confidence 355555655655554 777877 555 99999999999999999998 66664
No 22
>KOG3514|consensus
Probab=97.45 E-value=8e-05 Score=69.51 Aligned_cols=38 Identities=39% Similarity=0.917 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 28 PCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 28 ~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
.| ++|||+|+|+|.+.|+.|.|+|..|+|.|+.|+.+.
T Consensus 625 ~C-~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~CerE~ 662 (1591)
T KOG3514|consen 625 IC-ESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCEREA 662 (1591)
T ss_pred cc-CCCcccCCCCccccccccccccccCcccCcccccee
Confidence 69 799999999999999999999999899999998763
No 23
>KOG4289|consensus
Probab=97.43 E-value=0.00014 Score=69.71 Aligned_cols=40 Identities=30% Similarity=0.661 Sum_probs=36.8
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
..+.| ++.+|+|+|+|++.|++|+|+||. +|.|+.|++.+
T Consensus 1500 rk~fC-dsg~C~n~g~CvnrWg~~~C~CP~-~fggk~c~~~m 1539 (2531)
T KOG4289|consen 1500 RKNFC-DSGQCSNGGTCVNRWGGFSCECPL-GFGGKGCCQGM 1539 (2531)
T ss_pred hhccc-CCCccCCCCeeecccCcEeecCcc-ccCCcchhhcc
Confidence 45789 699999999999999999999999 99999998875
No 24
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=97.21 E-value=0.00027 Score=61.46 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=37.8
Q ss_pred cceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.+..|.....++. +.-++. |.| |||++|||++|+|||+|+.++|.||+
T Consensus 133 p~~~~R~~i~e~L~TGIraID~--l~pigkGQR~gIfgg~GvGKs~L~~~~~~~~~ 186 (494)
T CHL00060 133 PAFIQLDTKLSIFETGIKVVDL--LAPYRRGGKIGLFGGAGVGKTVLIMELINNIA 186 (494)
T ss_pred cCchhcccccceeecCceeeec--cCCcccCCEEeeecCCCCChhHHHHHHHHHHH
Confidence 34444555554444 778887 555 99999999999999999999999964
No 25
>KOG3516|consensus
Probab=97.15 E-value=0.00033 Score=65.78 Aligned_cols=46 Identities=28% Similarity=0.755 Sum_probs=39.3
Q ss_pred cccccccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 20 SVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 20 ~v~~~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
+|.......| .+.||+|||.|++.+.+|+|+|..|.|.|+.|..++
T Consensus 949 gv~~GC~GhC-ss~~C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~ei 994 (1306)
T KOG3516|consen 949 GVSPGCEGHC-SSYPCLNGGHCVERYDGYTCDCSRTAYDGPFCSKEI 994 (1306)
T ss_pred cccCCCcccc-ccccccCCCEEEEecCceeeccccCcCCCCcccccc
Confidence 3444455679 688999999999999999999998899999998874
No 26
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.09 E-value=0.00044 Score=56.01 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=37.0
Q ss_pred cceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.+..|.....++. +.-++. |.| |||++||+++|+|||+|+.+.+.|++
T Consensus 41 p~~~~R~~~~e~L~TGIr~ID~--l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~ 94 (274)
T cd01133 41 PEFVEQSTKTEILETGIKVIDL--LAPYAKGGKIGLFGGAGVGKTVLIMELINNIA 94 (274)
T ss_pred CCchhhcCcCcccccCceeeec--cCCcccCCEEEEecCCCCChhHHHHHHHHHHH
Confidence 34444444444443 677777 555 99999999999999999999999875
No 27
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.90 E-value=0.0008 Score=57.91 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=37.1
Q ss_pred cceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.+..|.....++. +.-++. |.| |||++|||++|+|||+|+.++|.||+
T Consensus 110 p~~~~R~~i~e~L~TGIr~ID~--l~pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~ 163 (449)
T TIGR03305 110 PTLTRRSSKSEVFETGIKAIDV--LVPLERGGKAGLFGGAGVGKTVLLTEMIHNMV 163 (449)
T ss_pred CCchhcccCCcccccCceeecc--ccccccCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 44445555544444 566666 444 99999999999999999999999975
No 28
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.55 E-value=0.0022 Score=55.37 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=35.8
Q ss_pred cceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.+..|.....++. +.-++. |.| |||++|||++|+|||+|+.+ |++|.
T Consensus 113 ~~~~~R~~~~~~l~TGi~~ID~--l~pig~GQR~gIfgg~G~GKs~L~~~-ia~~~ 165 (458)
T TIGR01041 113 INPYAREYPEEFIQTGISAIDG--MNTLVRGQKLPIFSGSGLPHNELAAQ-IARQA 165 (458)
T ss_pred CChhhcCCCCCcCCCCeEEEEc--cCccccCCEEEeeCCCCCCHHHHHHH-HHHhh
Confidence 33444555554443 777887 555 99999999999999999998 77764
No 29
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.53 E-value=0.0022 Score=55.26 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=36.3
Q ss_pred ccceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
++.+..|....+++. +.-++. |.| |||++|||++|+|||+|+.+ |++|
T Consensus 114 ap~~l~R~~i~epl~TGi~~ID~--l~pig~GQR~gIfgg~G~GKs~L~~~-ia~~ 166 (460)
T PRK04196 114 PINPVAREYPEEFIQTGISAIDG--LNTLVRGQKLPIFSGSGLPHNELAAQ-IARQ 166 (460)
T ss_pred CCChhhcCCCCccccCCeEEEec--cCcccCCCEEEeeCCCCCCccHHHHH-HHHh
Confidence 344555666655554 777777 555 99999999999999999988 6665
No 30
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.50 E-value=0.0034 Score=35.26 Aligned_cols=27 Identities=30% Similarity=0.800 Sum_probs=23.4
Q ss_pred CCCCCCCeeeeCCCCceEEecCCCeecccc
Q psy10055 33 DPCKHGGICISTDSGPICECRNLDFEGIYC 62 (124)
Q Consensus 33 nPC~ngG~C~~~~~~y~C~C~~tg~~G~~C 62 (124)
..|.+.|+|+.. ..+|.|.+ +|+|+.|
T Consensus 6 ~~C~~~G~C~~~--~g~C~C~~-g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSP--CGRCVCDS-GYTGPDC 32 (32)
T ss_pred CccCCCCEEeCC--CCEEECCC-CCcCCCC
Confidence 469999999876 56999999 9999987
No 31
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.39 E-value=0.0026 Score=55.02 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=30.6
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.-++. |.| |||++||+++|+|||+|+.+++.|++
T Consensus 132 iraID~--l~pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~ 169 (463)
T PRK09280 132 IKVIDL--LAPYAKGGKIGLFGGAGVGKTVLIQELINNIA 169 (463)
T ss_pred Ceeecc--cCCcccCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 677777 445 99999999999999999999999874
No 32
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.35 E-value=0.0033 Score=54.45 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=35.6
Q ss_pred cceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.+..|.....++. +.-++. |.| |||++||+++|+|||+|+.+ |++|.
T Consensus 113 ~~~~~R~~i~e~l~TGI~aID~--l~~ig~GQRigIfagsGvGKs~L~~~-i~~~~ 165 (466)
T TIGR01040 113 INPYARIYPEEMIQTGISAIDV--MNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQA 165 (466)
T ss_pred CChhHcCCCCCeeecCcEEEec--cCccccCCeeeeecCCCCCHHHHHHH-HHHhh
Confidence 34445555555444 777777 545 99999999999999999987 77664
No 33
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.14 E-value=0.0044 Score=53.63 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=36.0
Q ss_pred ceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 74 SMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 74 ~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
.+..|.....++. +.-++. |.| |||.+||+++|+|||+|+.+++.|++
T Consensus 116 ~~~~R~~~~e~l~TGiraID~--l~pig~GQr~~If~~~G~GKt~L~~~~~~~~~ 168 (461)
T TIGR01039 116 SFEEQSTKVEILETGIKVIDL--LAPYAKGGKIGLFGGAGVGKTVLIQELINNIA 168 (461)
T ss_pred ChhHcCCcccccccCceeecc--cCCcccCCEEEeecCCCCChHHHHHHHHHHHH
Confidence 3344444444433 677777 545 99999999999999999999999864
No 34
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.04 E-value=0.0057 Score=52.87 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=36.0
Q ss_pred ceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 74 SMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 74 ~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
.+..|.....++. +.-++. |.| |||.+||++.|+|||+|..+.+.|++
T Consensus 116 ~~~~R~~~~e~l~TGir~ID~--l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~ 168 (461)
T PRK12597 116 PLAEQDTSTEILETGIKVIDL--LCPIAKGGKTGLFGGAGVGKTVLMMELIFNIS 168 (461)
T ss_pred ChhhcCCcCcceecCCeeecc--cCccccCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 3344444444443 677777 445 99999999999999999999999874
No 35
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.99 E-value=0.0052 Score=28.09 Aligned_cols=13 Identities=31% Similarity=1.025 Sum_probs=10.8
Q ss_pred eEEecCCCeecccc
Q psy10055 49 ICECRNLDFEGIYC 62 (124)
Q Consensus 49 ~C~C~~tg~~G~~C 62 (124)
.|.|++ ||+|++|
T Consensus 1 ~C~C~~-G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPP-GWTGPNC 13 (13)
T ss_dssp EEEE-T-TEETTTT
T ss_pred CccCcC-CCcCCCC
Confidence 589999 9999987
No 36
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.98 E-value=0.0043 Score=55.52 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=28.3
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
..-++. |.| |||++|+++.++|||+|+.+ |+||+
T Consensus 404 iRvIDl--l~PIGkGQR~LIvgpp~aGKTtLL~~-IAn~i 440 (672)
T PRK12678 404 TRVIDL--IMPIGKGQRGLIVSPPKAGKTTILQN-IANAI 440 (672)
T ss_pred ceeeee--ecccccCCEeEEeCCCCCCHHHHHHH-HHHHH
Confidence 566777 445 99999999999999999876 88764
No 37
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.36 E-value=0.011 Score=50.59 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=26.7
Q ss_pred eeeEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHh
Q psy10055 85 RLIECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 85 ~~~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
....-++. |.| |||++|+|+.++|||+||-+ |.|
T Consensus 155 ~~~rvID~--l~PIGkGQR~lIvgppGvGKTTLaK~-Ian 191 (416)
T PRK09376 155 LSTRIIDL--IAPIGKGQRGLIVAPPKAGKTVLLQN-IAN 191 (416)
T ss_pred cceeeeee--ecccccCceEEEeCCCCCChhHHHHH-HHH
Confidence 34566666 445 99999999999999999877 444
No 38
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.25 E-value=0.014 Score=49.40 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=19.5
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
|||++|+|+.|+|||+|+.+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~ 152 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQ 152 (380)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 99999999999999999988
No 39
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=94.59 E-value=0.03 Score=32.13 Aligned_cols=27 Identities=26% Similarity=0.711 Sum_probs=20.9
Q ss_pred CCCCCCCeeeeCCCCceEEecCCCeecc
Q psy10055 33 DPCKHGGICISTDSGPICECRNLDFEGI 60 (124)
Q Consensus 33 nPC~ngG~C~~~~~~y~C~C~~tg~~G~ 60 (124)
..|....+|.+..+.|.|.|.+ ||.|.
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~-Gy~Gd 32 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKP-GYEGD 32 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-C-EEECC
T ss_pred CCCCCCcEeecCCCCEEeECCC-CCccC
Confidence 4577889999999999999999 99863
No 40
>KOG1225|consensus
Probab=93.86 E-value=0.11 Score=45.82 Aligned_cols=56 Identities=25% Similarity=0.683 Sum_probs=40.0
Q ss_pred CCCcccccCC--------CCccccccccccccCC--CCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 3 ENRNCTALCS--------DCQYCHYSVENSVLDP--CEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 3 ~~~~~~~~~~--------~~~~c~~~v~~~~~d~--C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
+.+.|+..|+ .|+ |..++...+-++ | +++|..++.|++. .|.|++ +|.|+.|+...
T Consensus 248 ~~~~C~~~c~~~g~c~~G~CI-C~~Gf~G~dC~e~~C--p~~cs~~g~~~~g----~CiC~~-g~~G~dCs~~~ 313 (525)
T KOG1225|consen 248 STIYCPGGCTGRGQCVEGRCI-CPPGFTGDDCDELVC--PVDCSGGGVCVDG----ECICNP-GYSGKDCSIRR 313 (525)
T ss_pred ccccCCCCCcccceEeCCeEe-CCCCCcCCCCCcccC--CcccCCCceecCC----EeecCC-Ccccccccccc
Confidence 3667888877 455 777777665444 6 5558777777664 899999 89999987543
No 41
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.40 E-value=0.068 Score=45.19 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=27.0
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
.+-++. |.| |||.+|+|+.|+|||+|+. .|++|+
T Consensus 145 irvID~--l~Pi~kGqr~~I~G~~G~GKT~L~~-~Iak~~ 181 (369)
T cd01134 145 QRVLDT--LFPVVKGGTAAIPGPFGCGKTVIQQ-SLSKYS 181 (369)
T ss_pred chhhhc--cccccCCCEEEEECCCCCChHHHHH-HHHhCC
Confidence 455555 444 9999999999999999996 577775
No 42
>KOG4260|consensus
Probab=92.83 E-value=0.049 Score=44.86 Aligned_cols=46 Identities=24% Similarity=0.643 Sum_probs=40.3
Q ss_pred CCcccccccccc-----ccCCCC-CCCCCCCCCeeeeCCCCceEEecCCCeec
Q psy10055 13 DCQYCHYSVENS-----VLDPCE-EHDPCKHGGICISTDSGPICECRNLDFEG 59 (124)
Q Consensus 13 ~~~~c~~~v~~~-----~~d~C~-~~nPC~ngG~C~~~~~~y~C~C~~tg~~G 59 (124)
+|.-|..+|+++ ++|+|. ++.||...-+|+++.++|.|.+.+ ||.+
T Consensus 218 ~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~-Gy~~ 269 (350)
T KOG4260|consen 218 GCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKE-GYKK 269 (350)
T ss_pred ChhhhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccc-cccC
Confidence 788999999997 778882 277899999999999999999998 8875
No 43
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=92.62 E-value=0.086 Score=38.78 Aligned_cols=32 Identities=38% Similarity=0.944 Sum_probs=26.4
Q ss_pred CCCCCCCCeeeeCC--CCceEEecCCCeeccccccC
Q psy10055 32 HDPCKHGGICISTD--SGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 32 ~nPC~ngG~C~~~~--~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.+-|.|| +|.-.. ..+.|.|+. ||+|.+||..
T Consensus 50 ~~YClHG-~C~yI~dl~~~~CrC~~-GYtGeRCEh~ 83 (139)
T PHA03099 50 DGYCLHG-DCIHARDIDGMYCRCSH-GYTGIRCQHV 83 (139)
T ss_pred CCEeECC-EEEeeccCCCceeECCC-Ccccccccce
Confidence 4568897 897444 689999999 9999999875
No 44
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=92.22 E-value=0.14 Score=29.40 Aligned_cols=18 Identities=28% Similarity=0.822 Sum_probs=15.3
Q ss_pred eeeeCCCCceEEecCCCee
Q psy10055 40 ICISTDSGPICECRNLDFE 58 (124)
Q Consensus 40 ~C~~~~~~y~C~C~~tg~~ 58 (124)
+|++.+++|.|.|++ ||.
T Consensus 11 ~C~~~~g~~~C~C~~-Gy~ 28 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPP-GYK 28 (36)
T ss_dssp EEEEETTSEEEE-ST-TEE
T ss_pred CCccCCCceEeECCC-CCE
Confidence 688999999999999 985
No 45
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.79 E-value=0.13 Score=40.90 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.0
Q ss_pred cCCCCceeEeccCCCCchhhhHH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~ 117 (124)
+-.|||.+|+|+.|+|||+++-.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~ 35 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQS 35 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 44799999999999999998744
No 46
>PHA02887 EGF-like protein; Provisional
Probab=91.77 E-value=0.14 Score=37.14 Aligned_cols=32 Identities=31% Similarity=0.844 Sum_probs=24.9
Q ss_pred CCCCCCCCeeeeC--CCCceEEecCCCeeccccccC
Q psy10055 32 HDPCKHGGICIST--DSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 32 ~nPC~ngG~C~~~--~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.+-|.| |+|.-. ...+.|.|+. ||+|.+|++.
T Consensus 91 k~YCiH-G~C~yI~dL~epsCrC~~-GYtG~RCE~v 124 (126)
T PHA02887 91 NDFCIN-GECMNIIDLDEKFCICNK-GYTGIRCDEV 124 (126)
T ss_pred hCEeeC-CEEEccccCCCceeECCC-CcccCCCCcc
Confidence 345786 599744 3678999999 9999999864
No 47
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=91.65 E-value=0.18 Score=43.52 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=27.8
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
++-++. |.| |||+.||+++|+|||+| +..|.+|.
T Consensus 128 IkaID~--l~pl~rGQkigIF~gaGvgk~~L-~~~ia~~~ 164 (436)
T PRK02118 128 IPMIDV--FNTLVESQKIPIFSVSGEPYNAL-LARIALQA 164 (436)
T ss_pred cEEeec--ccccccCCEEEEEeCCCCCHHHH-HHHHHHhh
Confidence 566666 444 99999999999999998 77788875
No 48
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.27 E-value=0.16 Score=32.50 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=16.4
Q ss_pred ceeEeccCCCCchhhhHHHHH
Q psy10055 100 RELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~ 120 (124)
--+|.|+++.|||+| +|+|.
T Consensus 25 ~tli~G~nGsGKSTl-lDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTL-LDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHH-HHHHH
Confidence 578999999999987 56653
No 49
>KOG1214|consensus
Probab=91.14 E-value=0.2 Score=46.85 Aligned_cols=39 Identities=23% Similarity=0.652 Sum_probs=33.4
Q ss_pred cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeec--ccccc
Q psy10055 24 SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEG--IYCEK 64 (124)
Q Consensus 24 ~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G--~~Ce~ 64 (124)
.+.|+| .++-|....+|++++++|.|.|.+ ||.| ..|-.
T Consensus 825 ~dvDeC-~psrChp~A~CyntpgsfsC~C~p-Gy~GDGf~CVP 865 (1289)
T KOG1214|consen 825 TDVDEC-SPSRCHPAATCYNTPGSFSCRCQP-GYYGDGFQCVP 865 (1289)
T ss_pred cccccc-CccccCCCceEecCCCcceeeccc-CccCCCceecC
Confidence 377999 699999999999999999999999 9975 44433
No 50
>KOG1217|consensus
Probab=90.65 E-value=0.24 Score=40.13 Aligned_cols=36 Identities=31% Similarity=0.822 Sum_probs=32.0
Q ss_pred ccCCCCCCC-CCCCCCeeeeCCCCceEEecCCCeecccc
Q psy10055 25 VLDPCEEHD-PCKHGGICISTDSGPICECRNLDFEGIYC 62 (124)
Q Consensus 25 ~~d~C~~~n-PC~ngG~C~~~~~~y~C~C~~tg~~G~~C 62 (124)
+++.| ... +|.++++|++..+.|.|.|++ +|.|..|
T Consensus 270 ~~~~C-~~~~~c~~~~~C~~~~~~~~C~C~~-g~~g~~~ 306 (487)
T KOG1217|consen 270 DVDSC-ALIASCPNGGTCVNVPGSYRCTCPP-GFTGRLC 306 (487)
T ss_pred ecccc-CCCCccCCCCeeecCCCcceeeCCC-CCCCCCC
Confidence 56889 466 499999999999889999999 9999998
No 51
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=90.61 E-value=0.18 Score=36.46 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=17.4
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+.--+|+|.+++|||+|+ ++|
T Consensus 19 ~g~~vi~G~Ng~GKStil-~ai 39 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL-EAI 39 (202)
T ss_dssp SEEEEEEESTTSSHHHHH-HHH
T ss_pred CCcEEEECCCCCCHHHHH-HHH
Confidence 357789999999999997 555
No 52
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.16 E-value=0.27 Score=42.39 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=33.0
Q ss_pred cceeecccccccee--eEeccC-CCcCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 73 ISMRVRGSRKKLRL--IECEDG-AGMDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~-~~mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.+..|.....++. +.-++. +.+..|||..|+|.++.|||+| +..|.+|.
T Consensus 134 p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStL-l~~Ia~~~ 186 (439)
T PRK06936 134 PAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTL-LASLIRSA 186 (439)
T ss_pred CChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChHHH-HHHHhcCC
Confidence 33444444444333 233333 3345699999999999999999 78888764
No 53
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=90.15 E-value=0.22 Score=44.46 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=30.3
Q ss_pred eecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHH
Q psy10055 76 RVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 76 ~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~ 118 (124)
..|.....++. ..-++. |.| |||.+|+|+.|+|||+|..+.
T Consensus 201 ~~R~~~~~PL~TG~RvID~--lfPi~kGqr~~I~gg~G~GKT~l~~~l 246 (591)
T TIGR01042 201 TEKLPANTPLLTGQRVLDA--LFPCVQGGTTAIPGAFGCGKTVISQSL 246 (591)
T ss_pred hhccCCCCccccchhhhhh--ccchhcCCeEEEEcCCCcCHHHHHHHH
Confidence 33344444444 566666 556 999999999999999999873
No 54
>PRK08149 ATP synthase SpaL; Validated
Probab=89.49 E-value=0.26 Score=42.32 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.6
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
.+..|||..|+|.++.|||+| ++.|++|.
T Consensus 147 ~i~~Gq~i~I~G~sG~GKTTL-l~~i~~~~ 175 (428)
T PRK08149 147 TCGVGQRMGIFASAGCGKTSL-MNMLIEHS 175 (428)
T ss_pred eEecCCEEEEECCCCCChhHH-HHHHhcCC
Confidence 355699999999999999999 67887764
No 55
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=88.71 E-value=0.36 Score=36.63 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.|+..++--++.|+.|+|||++++..+.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 46777999999999999999999987765
No 56
>KOG1217|consensus
Probab=88.56 E-value=0.39 Score=38.89 Aligned_cols=48 Identities=33% Similarity=0.842 Sum_probs=37.1
Q ss_pred cccccccc----ccCCCC-CCCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 17 CHYSVENS----VLDPCE-EHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 17 c~~~v~~~----~~d~C~-~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
|..++.+. ..+.|. ...+|++++.|.+..+.|.|.|++ +|.|..|+..
T Consensus 156 C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~-~~~~~~~~~~ 208 (487)
T KOG1217|consen 156 CTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPP-GYTGSTCETT 208 (487)
T ss_pred eCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCC-CccCCcCcCC
Confidence 55555553 115783 255699999999999999999999 9999999875
No 57
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.05 E-value=0.51 Score=35.52 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++..++-..|.|+.+.|||++|+..+.+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 46778999999999999999999988765
No 58
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=87.95 E-value=0.5 Score=35.75 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++..+..-.|.|..++|||++|+..+.+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36777899999999999999999998866
No 59
>PRK05973 replicative DNA helicase; Provisional
Probab=87.94 E-value=0.51 Score=37.42 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=25.4
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|.|..|+|||++|+..+.+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 6888999999999999999999988765
No 60
>PRK05922 type III secretion system ATPase; Validated
Probab=87.79 E-value=0.39 Score=41.36 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.1
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+..|||..|+|.++.|||+| +.+|.+|.
T Consensus 154 I~~GqrigI~G~nG~GKSTL-L~~Ia~~~ 181 (434)
T PRK05922 154 LGKGQRIGVFSEPGSGKSSL-LSTIAKGS 181 (434)
T ss_pred EcCCcEEEEECCCCCChHHH-HHHHhccC
Confidence 35599999999999999999 78887764
No 61
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.62 E-value=0.63 Score=36.17 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=25.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.++.+++.-+++|+.|+|||++|+..+.+
T Consensus 18 ~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 18 GGGIPAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445777999999999999999999876653
No 62
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=87.52 E-value=0.37 Score=41.52 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=26.3
Q ss_pred eEeccCC-CcCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 87 IECEDGA-GMDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~-~mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.-++.. .+..|||..|+|.+|.|||+|+ +.|.++.
T Consensus 143 i~aID~ll~I~~GQ~igI~G~sGaGKSTLl-~~I~g~~ 179 (434)
T PRK07196 143 VNAINGLLTIGKGQRVGLMAGSGVGKSVLL-GMITRYT 179 (434)
T ss_pred eeeccceEeEecceEEEEECCCCCCccHHH-HHHhccc
Confidence 3444443 2345999999999999999985 7777653
No 63
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=87.29 E-value=0.59 Score=35.44 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++.+++--+|.|..++|||++|...+.+
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 36778999999999999999999886654
No 64
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=86.94 E-value=0.53 Score=37.15 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=26.2
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-|+.+++-.++.|..|+|||++|+..+.+
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346778999999999999999999998775
No 65
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=86.78 E-value=0.62 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-|+.+++-.++.|+.++|||++|+..+.+
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 347888999999999999999999988765
No 66
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.34 E-value=0.61 Score=38.61 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=25.9
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-|+..+.-.+|+|..++|||+||+..+.+
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~ 78 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAE 78 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888899999999999999998876
No 67
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=86.31 E-value=0.55 Score=40.59 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=30.7
Q ss_pred ceeecccccccee--eEeccCC-CcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 74 SMRVRGSRKKLRL--IECEDGA-GMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 74 ~~~~r~~~~~~~~--~~C~~~~-~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.+..|.....++. +.-++.. .+..+||..|+|.+|.|||+|. ..|.++
T Consensus 131 ~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL-~~I~~~ 181 (442)
T PRK08927 131 PAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLL-SMLARN 181 (442)
T ss_pred ChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence 3334444433333 4444442 2345999999999999999995 666655
No 68
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.25 E-value=0.7 Score=34.76 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=25.0
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++..++--+|.|..++|||++|+..+.+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888899999999999999998765
No 69
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.16 E-value=0.45 Score=36.63 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl 46 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLL 46 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 455678999999999999999986
No 70
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.08 E-value=0.71 Score=33.70 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.4
Q ss_pred cC-CCCceeEeccCCCCchhhhHHHHHh
Q psy10055 95 MD-PPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 95 mv-p~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+. .++--+|.|..++|||+++++.+..
T Consensus 28 ~~~~g~l~~i~g~~g~GKT~~~~~l~~~ 55 (193)
T PF13481_consen 28 LLPRGELTLIAGPPGSGKTTLALQLAAA 55 (193)
T ss_dssp EE-TTSEEEEEECSTSSHHHHHHHHHHH
T ss_pred cccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 44 5889999999999999999998764
No 71
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=86.06 E-value=0.44 Score=25.10 Aligned_cols=16 Identities=31% Similarity=0.883 Sum_probs=12.3
Q ss_pred CceEEecCCCee----ccccc
Q psy10055 47 GPICECRNLDFE----GIYCE 63 (124)
Q Consensus 47 ~y~C~C~~tg~~----G~~Ce 63 (124)
+|.|.|++ ||. |..|+
T Consensus 1 sy~C~C~~-Gy~l~~d~~~C~ 20 (24)
T PF12662_consen 1 SYTCSCPP-GYQLSPDGRSCE 20 (24)
T ss_pred CEEeeCCC-CCcCCCCCCccc
Confidence 58999999 985 55663
No 72
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=85.83 E-value=0.57 Score=40.02 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.0
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
.+..+||.+|+|..+.|||+|. ..|++|.
T Consensus 133 ~i~~Gqri~I~G~sG~GKTtLl-~~i~~~~ 161 (413)
T TIGR03497 133 TIGKGQRVGIFAGSGVGKSTLL-GMIARNA 161 (413)
T ss_pred EEcCCCEEEEECCCCCCHHHHH-HHHhCCC
Confidence 3456999999999999999994 7777653
No 73
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=85.65 E-value=0.58 Score=35.70 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.3
Q ss_pred CCCceeEeccCCCCchhhhHHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
.+.-.||.|+++.|||++|++.|-
T Consensus 17 ~G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 17 GGVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999999999875
No 74
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.55 E-value=0.46 Score=34.91 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl 43 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLL 43 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 455678999999999999999975
No 75
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=85.48 E-value=0.49 Score=35.46 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl 45 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLL 45 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999987
No 76
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=85.42 E-value=0.82 Score=33.53 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=17.7
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.+--+++|.|+.|||++.-..+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~ 41 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFI 41 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCcCCHHHHHHHHH
Confidence 5677899999999999865444
No 77
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=85.39 E-value=0.79 Score=39.45 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.5
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.+..|||..|+|.++.|||+|. +.|+++
T Consensus 159 ~i~~Gq~~~I~G~sG~GKStLl-~~I~~~ 186 (440)
T TIGR01026 159 TVGKGQRIGIFAGSGVGKSTLL-GMIARN 186 (440)
T ss_pred ccCCCcEEEEECCCCCCHHHHH-HHHhCC
Confidence 3456999999999999999994 777765
No 78
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=85.36 E-value=0.43 Score=35.66 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl 44 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLL 44 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 79
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.33 E-value=0.46 Score=35.58 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl 43 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTI 43 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 344678999999999999999985
No 80
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=85.31 E-value=0.49 Score=34.94 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl 35 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLL 35 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44668999999999999999986
No 81
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=85.30 E-value=0.47 Score=35.74 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl 48 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLL 48 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 455678999999999999999975
No 82
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=85.08 E-value=0.48 Score=35.59 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl 47 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLL 47 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHH
Confidence 344668999999999999999975
No 83
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=84.96 E-value=0.47 Score=36.84 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl 49 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLL 49 (258)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999985
No 84
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.91 E-value=0.53 Score=35.84 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl 44 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLL 44 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999985
No 85
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=84.88 E-value=0.54 Score=35.89 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
++.+.+|+.-+|+|.+|.|||+|+ .+|
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl-~~l 48 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLL-RCI 48 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHH
Confidence 445678999999999999999985 444
No 86
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=84.88 E-value=0.73 Score=38.24 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.2
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
+..+||..|+|.++.|||+| +..|.++
T Consensus 66 i~~Gqri~I~G~sG~GKTtL-l~~Ia~~ 92 (326)
T cd01136 66 VGKGQRLGIFAGSGVGKSTL-LGMIARG 92 (326)
T ss_pred EcCCcEEEEECCCCCChHHH-HHHHhCC
Confidence 45699999999999999999 6777765
No 87
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.77 E-value=1.1 Score=38.29 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=24.3
Q ss_pred cCCCcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
..+.+..+||..|+|.++.|||+|+ ..|.++
T Consensus 133 ~~~~i~~Gq~i~I~G~sG~GKTtLl-~~I~~~ 163 (418)
T TIGR03498 133 TFLPLCRGQRLGIFAGSGVGKSTLL-SMLARN 163 (418)
T ss_pred eeccccCCcEEEEECCCCCChHHHH-HHHhCC
Confidence 3445667999999999999999995 555543
No 88
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.66 E-value=0.56 Score=35.17 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl 43 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLL 43 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 89
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.62 E-value=0.93 Score=30.07 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=17.7
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+.--+|.|..|+|||+++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999876543
No 90
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=84.42 E-value=0.55 Score=35.30 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl 46 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFL 46 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 91
>KOG3514|consensus
Probab=84.36 E-value=0.63 Score=44.58 Aligned_cols=38 Identities=29% Similarity=0.820 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
..| ..+.|.|.|.|+..|.+|.|.|..|.|+|+.|...
T Consensus 1019 t~c-~~~acanhG~c~q~w~~~~c~csmtS~~Gp~C~d~ 1056 (1591)
T KOG3514|consen 1019 TTC-SEDACANHGVCIQQWNGIACDCSMTSYSGPRCNDP 1056 (1591)
T ss_pred ccc-chhhhhccceeeeeecceeeeccccccCCCccCCC
Confidence 567 57889999999999999999999889999999865
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.32 E-value=0.56 Score=35.92 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl 45 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLL 45 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 445678999999999999999975
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=84.31 E-value=0.58 Score=35.83 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl 46 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTF 46 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH
Confidence 345678999999999999999975
No 94
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.31 E-value=0.98 Score=34.19 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=25.2
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++..+.-.+|.|..++|||++|+..+.+
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~ 46 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVE 46 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888899999999999999988765
No 95
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.24 E-value=0.74 Score=39.30 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.7
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
+..|||.+|+|.++.|||+|. +.|.++
T Consensus 134 i~~Gq~~~I~G~sG~GKTtLl-~~I~~~ 160 (411)
T TIGR03496 134 VGRGQRMGIFAGSGVGKSTLL-GMMARY 160 (411)
T ss_pred EecCcEEEEECCCCCCHHHHH-HHHhcC
Confidence 456999999999999999995 677654
No 96
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=84.19 E-value=0.56 Score=35.52 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl 43 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLL 43 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 97
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=84.13 E-value=0.54 Score=35.88 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-+|+|.+|.|||+|+-
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~ 47 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVS 47 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHH
Confidence 445689999999999999999863
No 98
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=84.10 E-value=0.55 Score=35.27 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl 48 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTL 48 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44568999999999999999986
No 99
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.04 E-value=0.57 Score=35.74 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl 43 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLL 43 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44668999999999999999975
No 100
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=84.00 E-value=0.73 Score=39.91 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.2
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+..|||.+|+|++|+|||+|+ ..|.+
T Consensus 159 i~~GqrigI~G~sG~GKSTLL-~~I~~ 184 (444)
T PRK08972 159 VGKGQRMGLFAGSGVGKSVLL-GMMTR 184 (444)
T ss_pred EcCCCEEEEECCCCCChhHHH-HHhcc
Confidence 456999999999999999995 44443
No 101
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=83.99 E-value=0.68 Score=41.36 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=23.1
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhH
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~ 116 (124)
.+-++. |.| |||.+|+|+.|+|||++.-
T Consensus 210 iRvID~--l~Pi~kGqr~~I~gg~G~GKT~l~~ 240 (578)
T TIGR01043 210 QRILDT--FFPIAKGGTAAIPGPFGSGKTVTQH 240 (578)
T ss_pred chhhhc--cccccCCCEEEEecCCCCCHHHHHH
Confidence 566666 555 9999999999999999843
No 102
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=83.98 E-value=0.57 Score=34.47 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|.|.+|.|||++.
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl 42 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLL 42 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHH
Confidence 444678999999999999999974
No 103
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=83.95 E-value=0.65 Score=34.82 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl 42 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLL 42 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 345668999999999999999986
No 104
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=83.86 E-value=1 Score=38.55 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=31.4
Q ss_pred eeecccccccee--eEeccCC-CcCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 75 MRVRGSRKKLRL--IECEDGA-GMDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 75 ~~~r~~~~~~~~--~~C~~~~-~mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+..|.....++. +.-++.. .+..+||..|+|.++.|||+| +..|.++.
T Consensus 119 ~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStL-l~~I~~~~ 169 (422)
T TIGR02546 119 PMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL-LGMIARGA 169 (422)
T ss_pred HHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHHH-HHHHhCCC
Confidence 334444444333 3334443 235599999999999999999 77777653
No 105
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.75 E-value=1 Score=34.60 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
++.+.+|+.-.|+|.+|.|||+|+..+|
T Consensus 15 sl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 15 DVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred eeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3445679999999999999999985554
No 106
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.75 E-value=0.65 Score=35.75 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl 46 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLL 46 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHH
Confidence 445678999999999999999986
No 107
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=83.75 E-value=0.56 Score=35.04 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl 44 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLL 44 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999975
No 108
>PRK06820 type III secretion system ATPase; Validated
Probab=83.73 E-value=0.79 Score=39.57 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=31.1
Q ss_pred cceeecccccccee--eEeccCC-CcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGA-GMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~-~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
+.+..|.....++. +.-++.. .+..|||.+|+|..+.|||+|+ ..|.+|
T Consensus 135 p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl-~~I~~~ 186 (440)
T PRK06820 135 PSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLL-GMLCAD 186 (440)
T ss_pred CChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHH-HHHhcc
Confidence 33344444433333 3444442 2345999999999999999995 677655
No 109
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=83.72 E-value=0.66 Score=35.21 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++.+.+|+.-+|+|.+|.|||+|+-
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~ 44 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLK 44 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHH
Confidence 3456789999999999999999863
No 110
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=83.71 E-value=0.62 Score=34.80 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl 43 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLA 43 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 111
>PHA00729 NTP-binding motif containing protein
Probab=83.71 E-value=0.67 Score=36.69 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=17.5
Q ss_pred CceeEeccCCCCchhhhHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~ 118 (124)
...+|+|..|+|||++|.-.
T Consensus 18 ~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999764
No 112
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=83.70 E-value=0.61 Score=34.93 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||+|.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl 43 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLL 43 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999984
No 113
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.62 E-value=0.63 Score=35.37 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl 48 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLI 48 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999985
No 114
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.61 E-value=0.65 Score=35.78 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl 48 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYL 48 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 445678999999999999999975
No 115
>PRK04328 hypothetical protein; Provisional
Probab=83.59 E-value=1.1 Score=35.05 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.++.|+.++|||.+|+..+.+
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46777999999999999999999988765
No 116
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=83.57 E-value=0.67 Score=35.48 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl 45 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLL 45 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999986
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=83.50 E-value=0.62 Score=36.47 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.8
Q ss_pred ceeEeccCCCCchhhhH
Q psy10055 100 RELIIGDRQTGKTALAI 116 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~ 116 (124)
.-+|+|..|+|||++|-
T Consensus 44 ~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVAR 60 (261)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45799999999999994
No 118
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.49 E-value=0.65 Score=35.80 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl 47 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLL 47 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 119
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.46 E-value=0.67 Score=34.97 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=20.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++.+.+|+.-+|+|.+|.|||+|.-
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIK 44 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHH
Confidence 3456689999999999999999863
No 120
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=83.40 E-value=1 Score=35.16 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=27.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.++-.+..-++.|.-++|||++++..+.++
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~ 47 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEG 47 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHH
Confidence 567779999999999999999999998875
No 121
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.37 E-value=0.86 Score=34.12 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.++--+|+|..|+|||+||.-.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~ 68 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIA 68 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHH
Confidence 36668899999999999998654
No 122
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=83.34 E-value=0.65 Score=35.52 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl 44 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLL 44 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=83.29 E-value=0.64 Score=35.53 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl 44 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLF 44 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344678999999999999999985
No 124
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=83.28 E-value=0.73 Score=34.94 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl 43 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTF 43 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHH
Confidence 344668999999999999999984
No 125
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.25 E-value=1 Score=38.75 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=26.5
Q ss_pred cCCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-+-++.+++-.+|.|+.++|||++++...-+
T Consensus 87 LgGGi~~GsvilI~G~pGsGKTTL~lq~a~~ 117 (454)
T TIGR00416 87 LGGGIVPGSLILIGGDPGIGKSTLLLQVACQ 117 (454)
T ss_pred hcCCccCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999999987554
No 126
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=83.23 E-value=1.2 Score=34.70 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=23.9
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.|++--+|-|..+.|||++|+..+.|
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ia~~ 42 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQIALN 42 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcCcEEEEEecccCCchHHHHHHHHH
Confidence 6889999999999999999999998876
No 127
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=83.22 E-value=0.69 Score=35.53 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl 46 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLL 46 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999986
No 128
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.21 E-value=0.64 Score=35.15 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|+|.+|.|||+|.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl 54 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLL 54 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHH
Confidence 344668999999999999999985
No 129
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=83.18 E-value=0.63 Score=34.81 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl 43 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTL 43 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999986
No 130
>PRK08116 hypothetical protein; Validated
Probab=83.18 E-value=0.81 Score=36.49 Aligned_cols=20 Identities=50% Similarity=0.518 Sum_probs=16.7
Q ss_pred eeEeccCCCCchhhhHHHHHh
Q psy10055 101 ELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~~~~~ 121 (124)
-+|.|+.|+|||+||. +|.|
T Consensus 117 l~l~G~~GtGKThLa~-aia~ 136 (268)
T PRK08116 117 LLLWGSVGTGKTYLAA-CIAN 136 (268)
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 6799999999999987 4444
No 131
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=83.11 E-value=1.2 Score=35.76 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=25.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-++..++-.+|+|..++|||++++....|
T Consensus 89 ~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 89 GGGIETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345666888899999999999999998877
No 132
>PRK09354 recA recombinase A; Provisional
Probab=83.06 E-value=1 Score=37.73 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-|+..+.-.+|+|..++|||+||+..+.+
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46766888889999999999999999887
No 133
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=82.98 E-value=0.73 Score=34.40 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl 43 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLL 43 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999874
No 134
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=82.96 E-value=0.69 Score=35.65 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl 46 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLL 46 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999975
No 135
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=82.95 E-value=0.82 Score=34.24 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||+|.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl 43 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLA 43 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHH
Confidence 455678999999999999999864
No 136
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=82.88 E-value=0.65 Score=34.51 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.0
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl 41 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLL 41 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHH
Confidence 334568999999999999999975
No 137
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=82.88 E-value=0.74 Score=36.00 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl 54 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLL 54 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 345668999999999999999985
No 138
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.81 E-value=0.71 Score=34.57 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.2
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
+.--+++|..|+|||++|.-.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 445778999999999999653
No 139
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.76 E-value=0.69 Score=34.61 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.+.+|++-.|+|.+|.|||++.
T Consensus 17 is~~i~~Ge~~~l~G~nGsGKSTLl 41 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLL 41 (211)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH
Confidence 3455678999999999999999986
No 140
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=82.71 E-value=1 Score=38.87 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=23.2
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.+..|||..|+|.+++|||++. ..|.++
T Consensus 151 ~i~~GqrigI~G~sG~GKSTLL-~~I~~~ 178 (433)
T PRK07594 151 TCGEGQRVGIFSAPGVGKSTLL-AMLCNA 178 (433)
T ss_pred ecCCCCEEEEECCCCCCccHHH-HHhcCC
Confidence 3456999999999999999996 666654
No 141
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=82.69 E-value=0.67 Score=35.11 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl 53 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLL 53 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999985
No 142
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=82.69 E-value=0.78 Score=34.53 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl 48 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLA 48 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 345568999999999999999874
No 143
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.66 E-value=0.64 Score=34.56 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.4
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.+.+|++-.|+|.+|.|||+|+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl 43 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLL 43 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHH
Confidence 3455678999999999999999985
No 144
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.66 E-value=0.74 Score=35.39 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||++.
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl 47 (252)
T PRK14272 24 NLDVQRGTVNALIGPSGCGKTTFL 47 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999975
No 145
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.61 E-value=0.74 Score=34.38 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|.|.+|.|||++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl 44 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLL 44 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 444568999999999999999985
No 146
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.60 E-value=0.66 Score=35.02 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl 47 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLL 47 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999986
No 147
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=82.53 E-value=1.1 Score=37.19 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=25.3
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-|+..+.-..|+|..++|||+||+..+.+
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~ 78 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAE 78 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46766778889999999999999999877
No 148
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=82.46 E-value=0.77 Score=34.25 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||+|+
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl 48 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLL 48 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999985
No 149
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=82.38 E-value=1.3 Score=33.47 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=25.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++.+++--+|.|+.++|||.+|+..+.+
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36777889999999999999999988765
No 150
>PRK10908 cell division protein FtsE; Provisional
Probab=82.34 E-value=0.77 Score=34.69 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl 45 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLL 45 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 151
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=82.33 E-value=0.72 Score=33.57 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=21.0
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl 43 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLM 43 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHH
Confidence 455678999999999999999985
No 152
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.33 E-value=0.7 Score=33.02 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=19.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+++.-+|+|.+|.|||++.
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll 42 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLL 42 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 334668899999999999999864
No 153
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=82.29 E-value=0.77 Score=34.15 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||++.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl 43 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLL 43 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH
Confidence 445678999999999999999986
No 154
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=82.23 E-value=0.74 Score=34.60 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=20.2
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl 45 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTL 45 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999875
No 155
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=82.22 E-value=1.3 Score=35.83 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.2
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-++..++-.+|+|..++|||.+|+..+.+
T Consensus 96 ~GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 96 GGGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred cCCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 346777889999999999999999999877
No 156
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=82.11 E-value=0.81 Score=33.40 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.++++-+|+|.++.|||+++
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl 44 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLF 44 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344678999999999999999985
No 157
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.11 E-value=0.84 Score=35.28 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl 50 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFL 50 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999975
No 158
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=82.10 E-value=1.2 Score=34.59 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=25.1
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
++.++.--+|.|..++|||++++....+
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 6888999999999999999999987665
No 159
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=82.08 E-value=0.75 Score=33.89 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl 43 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELA 43 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44567999999999999999975
No 160
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=82.04 E-value=0.72 Score=33.81 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.++.|||+++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl 45 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLL 45 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 445668999999999999999875
No 161
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=81.96 E-value=1.1 Score=38.51 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.4
Q ss_pred CCCceeEeccCCCCchhhhHHHHHh
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.|||.+|+|+.++|||+|+-. |.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~ 190 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQ 190 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHH
Confidence 499999999999999998765 444
No 162
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=81.94 E-value=0.81 Score=35.30 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl 43 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTIL 43 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344678999999999999999975
No 163
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=81.94 E-value=0.84 Score=35.10 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl 50 (252)
T CHL00131 27 NLSINKGEIHAIMGPNGSGKSTLS 50 (252)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHH
Confidence 344678999999999999999987
No 164
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=81.93 E-value=0.75 Score=35.05 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl 45 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLT 45 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 165
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=81.88 E-value=0.78 Score=34.46 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl 43 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLL 43 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHH
Confidence 445678999999999999999986
No 166
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.74 E-value=0.79 Score=34.79 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl 45 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTLV 45 (234)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999986
No 167
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=81.74 E-value=0.84 Score=34.67 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl 43 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLF 43 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 168
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.72 E-value=0.8 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl 44 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTM 44 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999975
No 169
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.70 E-value=0.82 Score=35.18 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl 46 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLI 46 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999986
No 170
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.69 E-value=0.81 Score=35.22 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl 47 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFL 47 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 445668999999999999999875
No 171
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=81.67 E-value=1.1 Score=36.90 Aligned_cols=23 Identities=48% Similarity=0.756 Sum_probs=19.6
Q ss_pred CcCCCCceeEeccCCCCchhhhH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++.++..-+|+|..|+|||++|-
T Consensus 152 g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHH
Confidence 45667789999999999999884
No 172
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=81.66 E-value=0.81 Score=35.58 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl 47 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLL 47 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 173
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=81.64 E-value=0.79 Score=35.56 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|+
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl 46 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTC 46 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 174
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=81.61 E-value=0.88 Score=35.62 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl 53 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTIL 53 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 455678999999999999999986
No 175
>KOG0989|consensus
Probab=81.56 E-value=0.83 Score=38.32 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=15.9
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
..--||+|.+||||||.|+
T Consensus 57 lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred CceEEeeCCCCCcHhHHHH
Confidence 3446799999999999886
No 176
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=81.39 E-value=0.99 Score=34.37 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl 43 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLS 43 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHH
Confidence 345668999999999999999975
No 177
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=81.37 E-value=0.86 Score=35.61 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl 44 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLL 44 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999975
No 178
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=81.35 E-value=0.81 Score=34.90 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl 52 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLL 52 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 179
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=81.31 E-value=0.85 Score=35.34 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl 44 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLL 44 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 180
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=81.24 E-value=1.2 Score=34.32 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=20.3
Q ss_pred CCCceeEeccCCCCchhhhHHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
+.....|.|..|+|||+||....-
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~ 41 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVAR 41 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHC
T ss_pred CeEEEEEEcCCcCCcceeeeeccc
Confidence 466778999999999999988663
No 181
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=81.15 E-value=0.87 Score=35.02 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl 48 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLL 48 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 182
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=81.01 E-value=0.83 Score=34.82 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.5
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
-++.+.+|+.-+|+|.+|.|||+|.
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl 42 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLL 42 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH
Confidence 3555678999999999999999985
No 183
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.00 E-value=0.9 Score=34.01 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl 44 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLL 44 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 184
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=80.93 E-value=0.85 Score=34.81 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||++.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLL 48 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44668999999999999999875
No 185
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=1.2 Score=38.64 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=28.8
Q ss_pred eEeccCCCcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 87 IECEDGAGMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 87 ~~C~~~~~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+.=+.+-+++||+-.||-||-|+|||+|.+.+.
T Consensus 82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva 114 (456)
T COG1066 82 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA 114 (456)
T ss_pred HHhhhcCCcccccEEEEccCCCCCHHHHHHHHH
Confidence 445667889999999999999999999998865
No 186
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=80.93 E-value=0.93 Score=34.23 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl 51 (224)
T TIGR02324 28 SLTVNAGECVALSGPSGAGKSTLL 51 (224)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 445678999999999999999985
No 187
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.88 E-value=0.82 Score=35.49 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.5
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-.|+|.+|.|||+|+-
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIK 56 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH
Confidence 445689999999999999999863
No 188
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=80.87 E-value=0.88 Score=34.96 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl 64 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTL 64 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 189
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=80.82 E-value=0.86 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl 49 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFL 49 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 190
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.80 E-value=0.97 Score=34.51 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl 43 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLL 43 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 44678999999999999999874
No 191
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.80 E-value=0.93 Score=34.84 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl 46 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLL 46 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 192
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.74 E-value=0.88 Score=35.56 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl 64 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFL 64 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999974
No 193
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.66 E-value=1.4 Score=38.23 Aligned_cols=44 Identities=18% Similarity=0.039 Sum_probs=33.7
Q ss_pred ccceeecccccccee--eEeccCCCcCC-CCceeEeccCCCCchhhh
Q psy10055 72 AISMRVRGSRKKLRL--IECEDGAGMDP-PSRELIIGDRQTGKTALA 115 (124)
Q Consensus 72 ~~~~~~r~~~~~~~~--~~C~~~~~mvp-~~r~li~g~~~~g~t~~~ 115 (124)
.|.+..|.....++. ++-++++-..+ |||..||...|.|||+|-
T Consensus 134 pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLL 180 (441)
T COG1157 134 PPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLL 180 (441)
T ss_pred CCCchhcccccccccccceeeecccccccCceeEEEecCCCcHHHHH
Confidence 455566666655544 88888865555 999999999999999874
No 194
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=80.66 E-value=0.87 Score=33.98 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl 43 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTM 43 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 195
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=80.65 E-value=0.87 Score=34.22 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||++.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl 47 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLL 47 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 196
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=80.59 E-value=1.5 Score=33.47 Aligned_cols=31 Identities=32% Similarity=0.831 Sum_probs=22.6
Q ss_pred ccCCCCC-CCCCCCCCeeeeCCCCceEEecCCCee
Q psy10055 25 VLDPCEE-HDPCKHGGICISTDSGPICECRNLDFE 58 (124)
Q Consensus 25 ~~d~C~~-~nPC~ngG~C~~~~~~y~C~C~~tg~~ 58 (124)
+.++|.. +.+|. ..|.++.+.|.|.|++ ||+
T Consensus 186 ~~~~C~~~~~~c~--~~C~~~~g~~~c~c~~-g~~ 217 (224)
T cd01475 186 VPDLCATLSHVCQ--QVCISTPGSYLCACTE-GYA 217 (224)
T ss_pred CchhhcCCCCCcc--ceEEcCCCCEEeECCC-Ccc
Confidence 4466721 22455 4799999999999999 986
No 197
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=80.58 E-value=0.94 Score=35.58 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl 55 (268)
T PRK10419 32 SLSLKSGETVALLGRSGCGKSTLA 55 (268)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999986
No 198
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=80.58 E-value=0.9 Score=35.62 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl 62 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFL 62 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 199
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.56 E-value=0.94 Score=34.26 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl 46 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLI 46 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 200
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.53 E-value=0.95 Score=34.90 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl 47 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFL 47 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 201
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=80.52 E-value=1.3 Score=38.12 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=22.2
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
+..|||.+|+|+++.|||+|+...+.++
T Consensus 153 I~~Gqri~I~G~sG~GKTtLl~~Ia~~~ 180 (432)
T PRK06793 153 IGIGQKIGIFAGSGVGKSTLLGMIAKNA 180 (432)
T ss_pred ecCCcEEEEECCCCCChHHHHHHHhccC
Confidence 3459999999999999999965544444
No 202
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.50 E-value=0.88 Score=35.00 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl 46 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFI 46 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999875
No 203
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=80.49 E-value=0.94 Score=33.09 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl 45 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLA 45 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=80.48 E-value=0.89 Score=35.78 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|+|.+|.|||+|+
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl 67 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYI 67 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999985
No 205
>PRK06921 hypothetical protein; Provisional
Probab=80.48 E-value=1.2 Score=35.59 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.4
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+.--+|+|..|+|||+||.
T Consensus 117 ~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4457899999999999986
No 206
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=80.43 E-value=0.91 Score=34.33 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl 43 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLL 43 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 207
>PRK05642 DNA replication initiation factor; Validated
Probab=80.42 E-value=1.2 Score=34.54 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.6
Q ss_pred eeEeccCCCCchhhhH
Q psy10055 101 ELIIGDRQTGKTALAI 116 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~ 116 (124)
-+|+|..|+|||+|+.
T Consensus 48 l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQ 63 (234)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999999954
No 208
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=80.40 E-value=0.94 Score=34.06 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||++.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl 47 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLL 47 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 44568899999999999999985
No 209
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.40 E-value=0.9 Score=34.11 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.0
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
+.+.+|.+-.++|.+|.|||+|.- +|+
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~-~il 42 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVN-EGL 42 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHh
Confidence 445689999999999999999973 443
No 210
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=80.35 E-value=0.95 Score=34.46 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl 50 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLL 50 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 211
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=80.29 E-value=1.1 Score=35.10 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||+|.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl 50 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLL 50 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHH
Confidence 445678999999999999999985
No 212
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=80.29 E-value=0.94 Score=32.40 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.++.|||+++
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl 43 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLL 43 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 44668999999999999999885
No 213
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.29 E-value=0.98 Score=34.24 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.4
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
..--+|+|..|+|||++|.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4557899999999999986
No 214
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=80.26 E-value=1 Score=34.64 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl 44 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLL 44 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 215
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.19 E-value=1 Score=35.52 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl 63 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLL 63 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 344678999999999999999986
No 216
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.19 E-value=0.97 Score=34.90 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|+
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl 49 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLL 49 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHH
Confidence 44678999999999999999985
No 217
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=80.18 E-value=0.96 Score=35.27 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl 45 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLL 45 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 345668999999999999999975
No 218
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.09 E-value=0.95 Score=33.00 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.++|.+|.|||++.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl 45 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLL 45 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999874
No 219
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=80.07 E-value=1 Score=34.73 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl 48 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVF 48 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHH
Confidence 344668999999999999999986
No 220
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=80.01 E-value=0.97 Score=34.18 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-+|+|.+|.|||+|+
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl 57 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVV 57 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3457999999999999999985
No 221
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.91 E-value=1.7 Score=36.52 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=26.2
Q ss_pred cCCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-+-++.+++-.+|.|+.++|||++++....+
T Consensus 75 LgGGi~~GslvLI~G~pG~GKStLllq~a~~ 105 (372)
T cd01121 75 LGGGLVPGSVILIGGDPGIGKSTLLLQVAAR 105 (372)
T ss_pred hcCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457888999999999999999999987644
No 222
>KOG1836|consensus
Probab=79.86 E-value=2.4 Score=42.26 Aligned_cols=43 Identities=28% Similarity=0.709 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCeeeeCC--CCceEE-ecCCCeeccccccCccceeecc
Q psy10055 29 CEEHDPCKHGGICISTD--SGPICE-CRNLDFEGIYCEKVEISVVRAI 73 (124)
Q Consensus 29 C~~~nPC~ngG~C~~~~--~~y~C~-C~~tg~~G~~Ce~~~~~~~~~~ 73 (124)
| .+=||.+++.|.... ....|. ||+ +|+|.+|+...+..+.++
T Consensus 777 C-~~C~Cp~~~~~~~~~~~~~~iCk~Cp~-gytG~rCe~c~dgyfg~p 822 (1705)
T KOG1836|consen 777 C-QPCPCPNGGACGQTPEILEVVCKNCPP-GYTGLRCEECADGYFGNP 822 (1705)
T ss_pred C-ccCCCCCChhhcCcCcccceecCCCCC-CCcccccccCCCccccCC
Confidence 8 688999999998665 467899 999 999999998766655433
No 223
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.82 E-value=0.92 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl 50 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIM 50 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 345668999999999999999985
No 224
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.77 E-value=0.98 Score=32.99 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+++.-.|+|.+|.|||++.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl 43 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLI 43 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34568999999999999999975
No 225
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=79.75 E-value=0.98 Score=35.04 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl 47 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVL 47 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 226
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=79.67 E-value=1.6 Score=37.69 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.6
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
+..+||.+|+|.++.|||+|. .+|..+
T Consensus 154 i~~Gq~~~i~G~sG~GKStLl-~~i~~~ 180 (434)
T PRK08472 154 CGKGQKLGIFAGSGVGKSTLM-GMIVKG 180 (434)
T ss_pred ecCCCEEEEECCCCCCHHHHH-HHHhhc
Confidence 456999999999999999996 666654
No 227
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=79.65 E-value=1.7 Score=36.38 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=25.4
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+|+-.+|.|..+.|||++++..+.+
T Consensus 191 G~~~G~l~vi~g~pg~GKT~~~l~~a~~ 218 (434)
T TIGR00665 191 GLQPSDLIILAARPSMGKTAFALNIAEN 218 (434)
T ss_pred CCCCCeEEEEEeCCCCChHHHHHHHHHH
Confidence 6888999999999999999999988765
No 228
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=79.62 E-value=0.96 Score=35.49 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl 50 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLL 50 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 445668999999999999999985
No 229
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.59 E-value=1 Score=34.71 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl 47 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVL 47 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999875
No 230
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=79.53 E-value=1.7 Score=37.83 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=25.6
Q ss_pred eEeccCC-CcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 87 IECEDGA-GMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 87 ~~C~~~~-~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
+.-++.+ .+..|||..|+|..+.|||++ +..|.++
T Consensus 163 iraID~ll~I~~Gqri~I~G~sG~GKTTL-L~~Ia~~ 198 (455)
T PRK07960 163 VRAINALLTVGRGQRMGLFAGSGVGKSVL-LGMMARY 198 (455)
T ss_pred ceeeeecccccCCcEEEEECCCCCCccHH-HHHHhCC
Confidence 4444442 234599999999999999999 4666654
No 231
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.47 E-value=1 Score=34.70 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl 46 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFL 46 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHH
Confidence 445678999999999999999985
No 232
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.43 E-value=1 Score=33.84 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
++.+.+|+.-+|+|.+|.|||++ +.+|.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTL-l~~l~ 49 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTL-LRLIA 49 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHh
Confidence 33456899999999999999998 44443
No 233
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=79.41 E-value=1.9 Score=37.15 Aligned_cols=33 Identities=33% Similarity=0.246 Sum_probs=27.9
Q ss_pred eccCCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 89 CEDGAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 89 C~~~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-..+-++.+++-.++.|+.|+|||++++..+-+
T Consensus 254 ~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~ 286 (484)
T TIGR02655 254 EMCGGGFFKDSIILATGATGTGKTLLVSKFLEN 286 (484)
T ss_pred HHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344557888999999999999999999987664
No 234
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=79.37 E-value=2 Score=35.24 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=25.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-|+..++-..|+|..++|||.+++...++
T Consensus 90 gGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 90 GGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 346777889999999999999999998765
No 235
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=79.34 E-value=1.9 Score=36.16 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=25.5
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|-|..+.|||++|+..+.|
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~ 217 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAEN 217 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999998755
No 236
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.33 E-value=1 Score=34.75 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl 45 (246)
T PRK14269 23 MQIEQNKITALIGASGCGKSTFL 45 (246)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44668999999999999999975
No 237
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.32 E-value=0.93 Score=33.72 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+++.-+|+|.+|.|||++.
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl 50 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLL 50 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHH
Confidence 345678999999999999999975
No 238
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=79.31 E-value=0.94 Score=34.07 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.+.+|+.-+|+|.+|.|||+++
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl 41 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLL 41 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHH
Confidence 3455678999999999999999986
No 239
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=79.22 E-value=1 Score=35.39 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl 50 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLF 50 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 240
>PRK12377 putative replication protein; Provisional
Probab=79.21 E-value=1.1 Score=35.52 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.8
Q ss_pred ceeEeccCCCCchhhhHHH
Q psy10055 100 RELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~ 118 (124)
--+|+|+.|+|||+||.-.
T Consensus 103 ~l~l~G~~GtGKThLa~AI 121 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAI 121 (248)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4578999999999998643
No 241
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=79.17 E-value=1 Score=35.23 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl 47 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLV 47 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44668999999999999999986
No 242
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=79.16 E-value=2.4 Score=29.04 Aligned_cols=34 Identities=35% Similarity=0.728 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeecc
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGI 60 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~ 60 (124)
..|.|+....|-.-|.|.. .....|.|++ ||..+
T Consensus 76 p~d~Cd~y~~CG~~g~C~~-~~~~~C~Cl~-GF~P~ 109 (110)
T PF00954_consen 76 PKDQCDVYGFCGPNGICNS-NNSPKCSCLP-GFEPK 109 (110)
T ss_pred cccCCCCccccCCccEeCC-CCCCceECCC-CcCCC
Confidence 4578955788999999954 3566799999 99654
No 243
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=79.13 E-value=1.7 Score=34.48 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=23.4
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
..+.-|.+++|..+.||||+ +.+|++++
T Consensus 28 ~~~~~~IllvG~tGvGKSSl-iNaLlg~~ 55 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSST-INSIFGER 55 (249)
T ss_pred ccCCeEEEEECCCCCcHHHH-HHHHhCCC
Confidence 34577999999999999999 78888753
No 244
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=79.12 E-value=1.1 Score=34.22 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl 65 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLL 65 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999875
No 245
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=79.12 E-value=1.5 Score=37.99 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=19.3
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+..|||.+|+|.+|.|||+|+
T Consensus 162 I~~Gqri~I~G~SGsGKTTLL 182 (450)
T PRK06002 162 LCAGQRIGIFAGSGVGKSTLL 182 (450)
T ss_pred ecCCcEEEEECCCCCCHHHHH
Confidence 556999999999999999997
No 246
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=79.02 E-value=1.1 Score=31.99 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=13.0
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
+.--++.|.+|+|||++.-.
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~ 43 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRA 43 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56678999999999999654
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.96 E-value=1.4 Score=34.95 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.1
Q ss_pred ceeEeccCCCCchhhhHHH
Q psy10055 100 RELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~ 118 (124)
--++.|..|+|||+||.-.
T Consensus 101 ~~~l~G~~GtGKThLa~ai 119 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAI 119 (244)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4678999999999998743
No 248
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=78.94 E-value=1.1 Score=34.37 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.0
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl 46 (250)
T PRK14240 22 INLDIEENQVTALIGPSGCGKSTFL 46 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHH
Confidence 3445668999999999999999985
No 249
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=78.94 E-value=1.1 Score=34.78 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl 56 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLL 56 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 250
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=78.92 E-value=1.1 Score=39.50 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.9
Q ss_pred ccCCCcCCCCceeEeccCCCCchhhh
Q psy10055 90 EDGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 90 ~~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
..++.+.++.|..|+|.+|.|||+|.
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLl 365 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLL 365 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHH
Confidence 34555678999999999999999974
No 251
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.90 E-value=1 Score=35.00 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLl 50 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFI 50 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999874
No 252
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.80 E-value=1.1 Score=34.57 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 25 s~~i~~Ge~~~I~G~nGsGKSTLl 48 (251)
T PRK14244 25 NLDIYKREVTAFIGPSGCGKSTFL 48 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344678999999999999999985
No 253
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.77 E-value=1.3 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.4
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.++.+-.|+|.+|.|||+|.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl 42 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAV 42 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHH
Confidence 45778999999999999999975
No 254
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=78.74 E-value=1.1 Score=35.29 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLl 55 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLL 55 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 255
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=78.70 E-value=1.5 Score=36.64 Aligned_cols=25 Identities=44% Similarity=0.687 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..+..++...+++|..|+|||++|-
T Consensus 159 ~~g~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 159 EVGIEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred hcCCCCCCceEEECCCCCChHHHHH
Confidence 3445678889999999999999973
No 256
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.69 E-value=1.1 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl 44 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLF 44 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999999985
No 257
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=78.62 E-value=1.5 Score=35.75 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.2
Q ss_pred CCceeEeccCCCCchhhhHHHHHh-cc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN-QK 123 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~-q~ 123 (124)
+.-.-|+|..+.|||++|+.++.| |+
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~ 86 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQK 86 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhc
Confidence 444558999999999999999998 65
No 258
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=78.52 E-value=1.2 Score=35.37 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|+
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTLl 44 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLL 44 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999975
No 259
>PRK08084 DNA replication initiation factor; Provisional
Probab=78.43 E-value=1.2 Score=34.54 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=15.6
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
..-+|+|.+|+|||+|+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 456899999999999986
No 260
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=78.32 E-value=2 Score=36.90 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=25.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-++.+++-.++.|+.|+|||++|+..+.+
T Consensus 25 ~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~ 54 (509)
T PRK09302 25 HGGLPKGRPTLVSGTAGTGKTLFALQFLVN 54 (509)
T ss_pred cCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 336778999999999999999999987765
No 261
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=78.20 E-value=1.3 Score=34.32 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl 45 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLL 45 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHH
Confidence 344568999999999999999975
No 262
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=78.14 E-value=1.5 Score=36.53 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.3
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
..-+|+|..|+|||+|+.
T Consensus 137 n~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 346799999999999983
No 263
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.13 E-value=1.2 Score=34.12 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.3
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-+|+|.+|.|||++.-
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~ 43 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLE 43 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHH
Confidence 345689999999999999999853
No 264
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.11 E-value=1.2 Score=35.24 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+++.-+|+|.+|.|||+|+
T Consensus 41 s~~i~~Ge~~~I~G~nGsGKSTLl 64 (276)
T PRK14271 41 SMGFPARAVTSLMGPTGSGKTTFL 64 (276)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 344668999999999999999975
No 265
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=78.11 E-value=1.2 Score=33.23 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.3
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-+|+|.+|.|||+|.-
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~ 52 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLIL 52 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHH
Confidence 345679999999999999999863
No 266
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=78.08 E-value=1.3 Score=34.54 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 31 sl~i~~Ge~~~i~G~nGsGKSTLl 54 (265)
T TIGR02769 31 SLSIEEGETVGLLGRSGCGKSTLA 54 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 344678999999999999999985
No 267
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=78.05 E-value=1.3 Score=33.04 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+++.-+|+|.+|.|||+|.
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl 52 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLL 52 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44668999999999999999874
No 268
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=78.00 E-value=1.6 Score=36.19 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCCceeEeccCCCCchhhhHHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
.|--.||.|++|.|||.+|++.|-
T Consensus 145 ~G~GvLi~G~SG~GKSelALeLi~ 168 (308)
T PRK05428 145 YGIGVLITGESGIGKSETALELIK 168 (308)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 367789999999999999999874
No 269
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.86 E-value=1.2 Score=34.90 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl 52 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTIS 52 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 270
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=77.82 E-value=2.3 Score=35.49 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-|+..++-..|+|..++|||.|++...++
T Consensus 120 gGGi~~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 120 GGGIETRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred CCCCCCCeEEEEecCCCCChhHHHHHHHHH
Confidence 346777888899999999999999998775
No 271
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=77.79 E-value=1.2 Score=34.91 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl 68 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLL 68 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 272
>PRK11823 DNA repair protein RadA; Provisional
Probab=77.79 E-value=2.2 Score=36.59 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=27.2
Q ss_pred ccCCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 90 EDGAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 90 ~~~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.+-++.+++-.+|.|+.++|||++++....+
T Consensus 72 ~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~ 103 (446)
T PRK11823 72 VLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR 103 (446)
T ss_pred HhcCCccCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34557888999999999999999999987654
No 273
>PRK05748 replicative DNA helicase; Provisional
Probab=77.78 E-value=2.2 Score=36.16 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.3
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+|+-.+|-|..+.|||++|+..+.|
T Consensus 199 G~~~G~livIaarpg~GKT~~al~ia~~ 226 (448)
T PRK05748 199 GLQPNDLIIVAARPSVGKTAFALNIAQN 226 (448)
T ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHH
Confidence 6889999999999999999999988765
No 274
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=77.76 E-value=1.2 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl 43 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLL 43 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44678999999999999999974
No 275
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=77.76 E-value=2.1 Score=36.85 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=26.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-++.+++--++.|..|+|||++|+.-+.+
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~ 44 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 44 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 347888999999999999999999988765
No 276
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=77.76 E-value=1.4 Score=34.61 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl 56 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLA 56 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHH
Confidence 445668999999999999999874
No 277
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.75 E-value=1.3 Score=33.07 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.2
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.++ +-+|+|.+|.|||+|+
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl 42 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLM 42 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHH
Confidence 334567 8999999999999985
No 278
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.61 E-value=1.2 Score=34.52 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl 55 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFI 55 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 279
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.61 E-value=1.8 Score=36.72 Aligned_cols=25 Identities=48% Similarity=0.701 Sum_probs=21.0
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++.++..-+++|..|+|||++|-
T Consensus 173 ~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 173 QIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHH
Confidence 3456678889999999999999973
No 280
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=77.60 E-value=1.4 Score=33.67 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl 44 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLS 44 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 281
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=77.57 E-value=1.3 Score=33.47 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||++.
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl 48 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLL 48 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999874
No 282
>PRK08939 primosomal protein DnaI; Reviewed
Probab=77.56 E-value=1.6 Score=35.62 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=15.9
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+.--+|+|+.|+|||+||.
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3456789999999999987
No 283
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.53 E-value=1.3 Score=33.72 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||++.
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl 44 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTIL 44 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 334568999999999999999985
No 284
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=77.51 E-value=1.3 Score=33.79 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl 45 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMM 45 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44568999999999999999974
No 285
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.50 E-value=1.3 Score=34.78 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl 51 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVL 51 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 455678999999999999999975
No 286
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.44 E-value=1.3 Score=34.82 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|+
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl 56 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVL 56 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 287
>PRK06315 type III secretion system ATPase; Provisional
Probab=77.37 E-value=2 Score=37.16 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=25.0
Q ss_pred eEeccC-CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 87 IECEDG-AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 87 ~~C~~~-~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.-++. +.+..+||..|+|.++.|||+|+ ..|+.
T Consensus 152 i~aID~~l~i~~Gq~i~I~G~sG~GKStLl-~~I~~ 186 (442)
T PRK06315 152 VRCIDGMLTVARGQRIGIFAGAGVGKSSLL-GMIAR 186 (442)
T ss_pred EEEEeccccccCCcEEEEECCCCCCcchHH-HHhhc
Confidence 444444 33455999999999999999996 55553
No 288
>PRK06893 DNA replication initiation factor; Validated
Probab=77.28 E-value=1.4 Score=34.03 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.0
Q ss_pred eeEeccCCCCchhhhHHH
Q psy10055 101 ELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~~ 118 (124)
-+|+|..|+|||+|+.-.
T Consensus 42 l~l~G~~G~GKThL~~ai 59 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAV 59 (229)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 468999999999998643
No 289
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=77.17 E-value=1.3 Score=34.70 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl 63 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYL 63 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 290
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.13 E-value=1.3 Score=34.72 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl 67 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLL 67 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 291
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.11 E-value=1.3 Score=35.21 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|+
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl 82 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFL 82 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 292
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=77.03 E-value=1.3 Score=34.95 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|+|.+|.|||+|.
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLl 67 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLS 67 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 444678999999999999999985
No 293
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=77.03 E-value=1.4 Score=34.17 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.3
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-.|+|.+|.|||+|+-
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~ 49 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLR 49 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH
Confidence 345689999999999999999863
No 294
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.01 E-value=1.4 Score=34.02 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl 47 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLL 47 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 33568999999999999999985
No 295
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=76.92 E-value=2 Score=33.60 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.2
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLl 42 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFI 42 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHH
Confidence 3567999999999999999985
No 296
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.83 E-value=1.2 Score=35.26 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl 54 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMI 54 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999975
No 297
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=76.77 E-value=1.4 Score=34.76 Aligned_cols=20 Identities=35% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
++--+|.|..|+|||++|.-
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 34478999999999999963
No 298
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=76.68 E-value=1.8 Score=36.80 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.7
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-..+++||.++|||++++...|.
T Consensus 89 g~~~~~~gdsg~GKttllL~l~Ia 112 (402)
T COG3598 89 GYVSILYGDSGVGKTTLLLYLCIA 112 (402)
T ss_pred CeeEEEecCCcccHhHHHHHHHHH
Confidence 445567799999999999988774
No 299
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.58 E-value=1.4 Score=35.11 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 59 sl~i~~Ge~~~l~G~nGsGKSTLl 82 (286)
T PRK14275 59 NADILSKYVTAIIGPSGCGKSTFL 82 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999975
No 300
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=76.57 E-value=1.4 Score=33.48 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+++.-+|+|.+|.|||+|+
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLl 50 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLL 50 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHH
Confidence 445678999999999999999875
No 301
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=76.54 E-value=1.5 Score=35.02 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.0
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
.--+|+|..|+||||||-
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 345789999999999995
No 302
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.53 E-value=1.4 Score=34.40 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-.|+|.+|.|||+|.
T Consensus 37 ~~i~~Ge~~~i~G~nGsGKSTLl 59 (265)
T PRK14252 37 MMVHEKQVTALIGPSGCGKSTFL 59 (265)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 33568999999999999999975
No 303
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=76.50 E-value=1.4 Score=35.21 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl 47 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIA 47 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34568999999999999999874
No 304
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=76.49 E-value=2.3 Score=31.72 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=16.3
Q ss_pred ceeEeccCCCCchhhhHHHH
Q psy10055 100 RELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~ 119 (124)
--.|+|.+|.|||+| +|+|
T Consensus 24 ~~~i~G~NGsGKSni-l~Ai 42 (178)
T cd03239 24 FNAIVGPNGSGKSNI-VDAI 42 (178)
T ss_pred eEEEECCCCCCHHHH-HHHH
Confidence 577999999999997 5776
No 305
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.34 E-value=1.5 Score=34.72 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=16.8
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
+---+|+|+-|+|||+||+-.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHH
Confidence 334579999999999998754
No 306
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.32 E-value=1.3 Score=34.88 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl 48 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLL 48 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34568999999999999999985
No 307
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=76.31 E-value=1.8 Score=34.94 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.7
Q ss_pred CCCCceeEeccCCCCchhhhHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~ 117 (124)
.|....|+.|+|||||||+.-.
T Consensus 50 ~pannvLL~G~rGtGKSSlVka 71 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKA 71 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHH
Confidence 3678889999999999998654
No 308
>PRK08181 transposase; Validated
Probab=76.30 E-value=1.5 Score=35.19 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.4
Q ss_pred CCCceeEeccCCCCchhhhHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~ 118 (124)
.++--+|+|..|+|||+||.-.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHH
Confidence 4566889999999999998754
No 309
>PRK08506 replicative DNA helicase; Provisional
Probab=76.28 E-value=2.6 Score=36.38 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=25.3
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|-|..+.|||++|+..+.|
T Consensus 188 G~~~G~LivIaarpg~GKT~fal~ia~~ 215 (472)
T PRK08506 188 GFNKGDLIIIAARPSMGKTTLCLNMALK 215 (472)
T ss_pred CCCCCceEEEEcCCCCChHHHHHHHHHH
Confidence 6889999999999999999999988765
No 310
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.24 E-value=1.4 Score=34.46 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl 52 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIA 52 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999986
No 311
>PRK09165 replicative DNA helicase; Provisional
Probab=76.20 E-value=2.5 Score=36.66 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=25.1
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|.|..+.|||++|+....|
T Consensus 213 G~~~g~livIaarpg~GKT~~al~ia~~ 240 (497)
T PRK09165 213 GLHPSDLIILAGRPSMGKTALATNIAFN 240 (497)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHH
Confidence 6889999999999999999999987665
No 312
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.19 E-value=1.4 Score=33.13 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl 50 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLL 50 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 313
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=76.15 E-value=1.5 Score=35.04 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||++.
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl 36 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTI 36 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 314
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.09 E-value=1.4 Score=34.80 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|+
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl 47 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLF 47 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999885
No 315
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=76.03 E-value=1.8 Score=37.22 Aligned_cols=22 Identities=45% Similarity=0.502 Sum_probs=19.3
Q ss_pred CCCCceeEeccCCCCchhhhHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~ 117 (124)
..|.-.||.|+.+||||+||+.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~g 84 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMG 84 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHH
Confidence 3577789999999999999985
No 316
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=75.95 E-value=2.2 Score=36.69 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.5
Q ss_pred cCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
+..+||..|+|..+.|||+++ ..|.++
T Consensus 155 i~~Gq~i~I~G~sG~GKStLl-~~I~~~ 181 (438)
T PRK07721 155 VGKGQRVGIFAGSGVGKSTLM-GMIARN 181 (438)
T ss_pred ecCCcEEEEECCCCCCHHHHH-HHHhcc
Confidence 456999999999999999985 666654
No 317
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.65 E-value=1.5 Score=34.75 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl 49 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLF 49 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999874
No 318
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.63 E-value=1.5 Score=36.16 Aligned_cols=19 Identities=37% Similarity=0.386 Sum_probs=15.7
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
+--+|.|.+|+|||++|.-
T Consensus 39 h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3347999999999999864
No 319
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=75.56 E-value=1.5 Score=32.98 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl 44 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLL 44 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999974
No 320
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.41 E-value=1.4 Score=34.98 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 28 l~i~~Ge~~~iiG~NGaGKSTLl 50 (287)
T PRK13641 28 FELEEGSFVALVGHTGSGKSTLM 50 (287)
T ss_pred EEEeCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999874
No 321
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=75.35 E-value=1.9 Score=33.96 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.7
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
+..-+|.|..|+|||++|...
T Consensus 21 g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHH
Confidence 556789999999999999753
No 322
>PRK09183 transposase/IS protein; Provisional
Probab=75.35 E-value=2 Score=34.06 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.2
Q ss_pred CCCCceeEeccCCCCchhhhHHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~ 118 (124)
..++.-+|+|..|+|||+||.-.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHH
Confidence 34777889999999999998754
No 323
>PRK06526 transposase; Provisional
Probab=75.31 E-value=2.5 Score=33.55 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=19.4
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.+..-+|+|..|+|||+||.-..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHH
Confidence 46678999999999999998643
No 324
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.23 E-value=1.6 Score=32.82 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=20.8
Q ss_pred ccCCCcCCCCceeEeccCCCCchhhhH
Q psy10055 90 EDGAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 90 ~~~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++.+.+ +.-+|+|.+|.|||+|+-
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~ 41 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLR 41 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHH
Confidence 34455677 899999999999999863
No 325
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.19 E-value=1.5 Score=34.74 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl 50 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLA 50 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 33568999999999999999986
No 326
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.10 E-value=1.7 Score=33.94 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 27 s~~i~~Ge~~~I~G~nGsGKSTLl 50 (261)
T PRK14258 27 SMEIYQSKVTAIIGPSGCGKSTFL 50 (261)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH
Confidence 345678999999999999999985
No 327
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=75.07 E-value=2.2 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=16.2
Q ss_pred ceeEeccCCCCchhhhHHHHHh
Q psy10055 100 RELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.-.|+|+.|+|||+| +-+|-|
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~ 56 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIAN 56 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHH
Confidence 468999999999997 445443
No 328
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=75.05 E-value=2.2 Score=36.72 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.++.++...+|+|..|+|||++|-
T Consensus 212 ~gi~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 212 IGIKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHH
Confidence 345677889999999999999973
No 329
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=74.99 E-value=3.1 Score=31.71 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=24.9
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++..++-.++.|+.++|||++|...+.+
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 46777999999999999999999887655
No 330
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=74.92 E-value=1.5 Score=34.05 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-+|+|.+|.|||+|.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl 64 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLS 64 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999975
No 331
>CHL00181 cbbX CbbX; Provisional
Probab=74.83 E-value=2 Score=34.66 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.7
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
+...+|+|..|||||++|.-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 334688999999999998643
No 332
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=74.80 E-value=1.6 Score=33.77 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 17 l~i~~Gei~~l~G~nGsGKSTLl 39 (248)
T PRK03695 17 AEVRAGEILHLVGPNGAGKSTLL 39 (248)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999999985
No 333
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=74.75 E-value=2.2 Score=31.35 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.7
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.-|.+++|+.+.|||+|+.-..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~ 38 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHh
Confidence 4689999999999999976654
No 334
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.73 E-value=1.7 Score=34.41 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=15.2
Q ss_pred eeEeccCCCCchhhhHH
Q psy10055 101 ELIIGDRQTGKTALAID 117 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~ 117 (124)
-+|.|..|+|||++|.-
T Consensus 39 lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRA 55 (337)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999999854
No 335
>PRK08727 hypothetical protein; Validated
Probab=74.69 E-value=1.7 Score=33.58 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.6
Q ss_pred ceeEeccCCCCchhhhHH
Q psy10055 100 RELIIGDRQTGKTALAID 117 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~ 117 (124)
.-+|+|..|+|||+|+.-
T Consensus 43 ~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALA 60 (233)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 378999999999999863
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=74.66 E-value=1.7 Score=36.85 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||||.
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl 46 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALA 46 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999986
No 337
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=74.60 E-value=1.7 Score=34.89 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++.+.+|++-+|+|.+|.|||+|+-
T Consensus 57 s~~i~~Ge~~~liG~NGsGKSTLl~ 81 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLM 81 (282)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3345689999999999999999863
No 338
>PF13245 AAA_19: Part of AAA domain
Probab=74.56 E-value=3.3 Score=26.89 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.3
Q ss_pred eeEeccCCCCchhhhHHHHHh
Q psy10055 101 ELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++.|.-|+|||++++..|..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999988754
No 339
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=74.55 E-value=1.8 Score=37.50 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=28.3
Q ss_pred eecccccccee--eEeccC-CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 76 RVRGSRKKLRL--IECEDG-AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 76 ~~r~~~~~~~~--~~C~~~-~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
..|.....++. +.-++. +.+..+||.+|+|.++.|||+|+ ..|.+
T Consensus 143 ~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl-~~I~g 190 (451)
T PRK05688 143 LNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLL-GMMTR 190 (451)
T ss_pred HHcccccCCcccceeeecceEEecCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 34444443333 333333 22355999999999999999996 44443
No 340
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.47 E-value=2 Score=34.70 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=16.7
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+..-+|+|..|+|||++|.
T Consensus 51 ~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 4567899999999999997
No 341
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.35 E-value=2.4 Score=36.36 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=18.1
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+...-+|+|++|.|||+| +|+|
T Consensus 26 ~~g~~~i~G~NG~GKStl-l~aI 47 (562)
T PHA02562 26 KVKKTLITGKNGAGKSTM-LEAL 47 (562)
T ss_pred CCCEEEEECCCCCCHHHH-HHHH
Confidence 346788999999999998 5665
No 342
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.23 E-value=1.7 Score=33.94 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl 53 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTLL 53 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999975
No 343
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=74.15 E-value=2.5 Score=31.10 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=18.2
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
--+.+++|+.+.|||||. ..+++
T Consensus 41 ~~~I~iiG~~g~GKStLl-~~l~~ 63 (204)
T cd01878 41 IPTVALVGYTNAGKSTLF-NALTG 63 (204)
T ss_pred CCeEEEECCCCCCHHHHH-HHHhc
Confidence 458899999999999994 44544
No 344
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=74.01 E-value=2.2 Score=34.23 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.7
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+-.-+|+|..|||||++|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3357788999999999983
No 345
>PRK06835 DNA replication protein DnaC; Validated
Probab=73.94 E-value=1.9 Score=35.64 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=16.6
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
..--+|+|+.|+|||+||.-
T Consensus 183 ~~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH
Confidence 35578999999999999863
No 346
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.79 E-value=1.6 Score=34.72 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||+|+
T Consensus 26 sl~i~~Ge~v~i~G~nGsGKSTLl 49 (288)
T PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLL 49 (288)
T ss_pred EEEEcCCCEEEEECCCCChHHHHH
Confidence 334568999999999999999985
No 347
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.78 E-value=1.8 Score=34.80 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||+|.
T Consensus 65 s~~i~~Ge~~~IvG~nGsGKSTLl 88 (305)
T PRK14264 65 SMDIPEKSVTALIGPSGCGKSTFL 88 (305)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 444668999999999999999985
No 348
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=73.68 E-value=1.8 Score=37.07 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||||.
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl 43 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLM 43 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 349
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.56 E-value=1.7 Score=34.22 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||++.
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl 45 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLF 45 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999985
No 350
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.55 E-value=1.7 Score=34.49 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl 50 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLI 50 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=73.42 E-value=1.8 Score=38.37 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++..|+|.+|.|||||.
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLL 46 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLM 46 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 352
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=73.40 E-value=1.7 Score=35.16 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-+|+|.+|.|||+|+
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl 50 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFI 50 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHH
Confidence 3458999999999999999985
No 353
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=73.37 E-value=2.7 Score=30.51 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=18.6
Q ss_pred CCCCceeEeccCCCCchhhhHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~ 117 (124)
.++...++.|+-|.|||+++-.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~ 41 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQG 41 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 4577888999999999999754
No 354
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.36 E-value=1.8 Score=34.34 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|+
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl 50 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTIS 50 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHH
Confidence 344568999999999999999985
No 355
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=73.34 E-value=2 Score=37.13 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.0
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|++-+|.|..|.|||||+
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl 386 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHH
Confidence 458999999999999999985
No 356
>KOG1225|consensus
Probab=73.20 E-value=3.2 Score=36.76 Aligned_cols=42 Identities=24% Similarity=0.646 Sum_probs=30.5
Q ss_pred ccccccccc--cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 17 CHYSVENSV--LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 17 c~~~v~~~~--~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
|+.++..++ +..| +..|.++|.|++. .|.|.+ ||+|..|.+.
T Consensus 300 C~~g~~G~dCs~~~c--padC~g~G~Ci~G----~C~C~~-Gy~G~~C~~~ 343 (525)
T KOG1225|consen 300 CNPGYSGKDCSIRRC--PADCSGHGKCIDG----ECLCDE-GYTGELCIQR 343 (525)
T ss_pred cCCCccccccccccC--CccCCCCCcccCC----ceEeCC-CCcCCccccc
Confidence 555554431 1224 6789999999943 899999 9999999875
No 357
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=73.19 E-value=2.2 Score=30.88 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.8
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
.-+.+++|+.+.|||+|.--
T Consensus 19 ~~ki~ilG~~~~GKStLi~~ 38 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHM 38 (190)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45678999999999999653
No 358
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.06 E-value=1.8 Score=34.20 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl 45 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLA 45 (274)
T ss_pred EEEeCCCEEEEECCCCCCHHHHH
Confidence 33568999999999999999874
No 359
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=72.92 E-value=3.4 Score=33.81 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=25.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.++.+++-..|+|..+.|||++++....|
T Consensus 90 ~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 90 GGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred cCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 346777888999999999999999988754
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=72.75 E-value=1.9 Score=38.34 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-.|+|.+|.|||||.
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLL 44 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLL 44 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 361
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.70 E-value=1.8 Score=34.20 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl 50 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTTV 50 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 362
>PRK06620 hypothetical protein; Validated
Probab=72.48 E-value=2.1 Score=32.91 Aligned_cols=18 Identities=39% Similarity=0.373 Sum_probs=15.9
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
..-.|+|..|+|||+|+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 557899999999999986
No 363
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=72.46 E-value=2.7 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.8
Q ss_pred CCCceeEeccCCCCchhhhHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~ 118 (124)
...--+++|.+|||||+||...
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHH
Confidence 4667789999999999999873
No 364
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=72.45 E-value=3.2 Score=37.27 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=23.5
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHH
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~ 118 (124)
.+-++. |.| |||.+|+|..|+|||+|+...
T Consensus 215 irvID~--l~Pi~kGq~~~Ipg~~G~GKTvl~~~i 247 (586)
T PRK04192 215 QRVIDT--FFPVAKGGTAAIPGPFGSGKTVTQHQL 247 (586)
T ss_pred chhhhc--ccccccCCeEEEecCCCCCHHHHHHHH
Confidence 455555 444 999999999999999887553
No 365
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=72.42 E-value=2 Score=34.17 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.7
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
|.+..+|--+|||.+|.|||++|-
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLak 57 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAK 57 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHH
Confidence 445679999999999999999983
No 366
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=72.31 E-value=3.2 Score=30.32 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=16.4
Q ss_pred eeEeccCCCCchhhhHHHHHh
Q psy10055 101 ELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~~~~~ 121 (124)
-+|-|.-|||||+++..+|..
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 568888999999988877654
No 367
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=72.31 E-value=2 Score=36.96 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||||.
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl 44 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFM 44 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHH
Confidence 445668999999999999999985
No 368
>PRK05636 replicative DNA helicase; Provisional
Probab=72.24 E-value=3.6 Score=35.96 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.6
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|-|..+.|||++|++.+.|
T Consensus 261 Gl~~G~Liiiaarpg~GKT~~al~~a~~ 288 (505)
T PRK05636 261 GLRGGQMIIVAARPGVGKSTLALDFMRS 288 (505)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 6888988899999999999999987654
No 369
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=71.97 E-value=2.8 Score=34.83 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.2
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+.-.||-|++|.|||-+|++.|
T Consensus 145 GvGVLItG~SG~GKSElALeLi 166 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELI 166 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHH
Confidence 6668999999999999999987
No 370
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=71.90 E-value=2 Score=33.83 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.8
Q ss_pred CcCCCCceeEeccCCCCchhhhH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.+.+|+.-.|+|.+|.|||+|.-
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~ 51 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTAR 51 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHH
Confidence 35589999999999999999863
No 371
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.90 E-value=2.1 Score=37.39 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.3
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
++--||.|.+|+|||++|.-
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred CeeEEEECCCCCCHHHHHHH
Confidence 44458999999999999853
No 372
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=71.80 E-value=2.1 Score=37.20 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|+|.+|.|||||.
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLl 50 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLL 50 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344668999999999999999985
No 373
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=71.69 E-value=2 Score=35.23 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 26 l~i~~Gei~~iiG~nGsGKSTLl 48 (343)
T PRK11153 26 LHIPAGEIFGVIGASGAGKSTLI 48 (343)
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 44568999999999999999986
No 374
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=71.66 E-value=2.3 Score=32.66 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=15.9
Q ss_pred ceeEeccCCCCchhhhHHH
Q psy10055 100 RELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~ 118 (124)
--++.|..|+|||+++.-.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNL 63 (269)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4678999999999998743
No 375
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=71.63 E-value=2 Score=34.18 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 28 ~~i~~Ge~~~i~G~nGaGKSTLl 50 (287)
T PRK13637 28 IEIEDGEFVGLIGHTGSGKSTLI 50 (287)
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34568999999999999999975
No 376
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=71.61 E-value=2.1 Score=36.84 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-+|.|..|.|||+|+
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLl 383 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLF 383 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHH
Confidence 44568999999999999999986
No 377
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=71.59 E-value=2.4 Score=29.81 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=18.7
Q ss_pred CCCCceeEeccCCCCchhhhHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~ 117 (124)
.+++..+|+|.++.|||+++.-
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALE 34 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHH
Confidence 4577889999999999998754
No 378
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=71.52 E-value=2 Score=34.27 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl 50 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLL 50 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34568999999999999999975
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=71.45 E-value=2.6 Score=37.17 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.2
Q ss_pred ccCCCcCCCCceeEeccCCCCchhhh
Q psy10055 90 EDGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 90 ~~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
..+..+.+|.|..++|.+|.||||+.
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLL 46 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLL 46 (530)
T ss_pred CCcceeCCCCEEEEECCCCCCHHHHH
Confidence 44556789999999999999999973
No 380
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.26 E-value=2.2 Score=37.32 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.0
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
+--+|.|.+|+|||++|.-
T Consensus 41 ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3458999999999999864
No 381
>PLN00223 ADP-ribosylation factor; Provisional
Probab=71.13 E-value=2.6 Score=30.97 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.1
Q ss_pred CceeEeccCCCCchhhhHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~ 118 (124)
-|.+++|+.+.|||+|..-.
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l 37 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKL 37 (181)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999997544
No 382
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=71.10 E-value=2.2 Score=36.72 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||+|.
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl 362 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLL 362 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHH
Confidence 445567999999999999999985
No 383
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=70.91 E-value=2.3 Score=36.38 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+...+|++.+|.|..|.||||++
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 33568999999999999999986
No 384
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=70.76 E-value=2.4 Score=36.72 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|+|.+|.|||||.
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl 48 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLL 48 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344568999999999999999985
No 385
>PLN03025 replication factor C subunit; Provisional
Probab=70.71 E-value=2.4 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.0
Q ss_pred eeEeccCCCCchhhhHH
Q psy10055 101 ELIIGDRQTGKTALAID 117 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~ 117 (124)
-+|.|..|+|||++|.-
T Consensus 37 lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 37 LILSGPPGTGKTTSILA 53 (319)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999999864
No 386
>PRK05595 replicative DNA helicase; Provisional
Probab=70.66 E-value=4.3 Score=34.48 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.8
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|-|..+.|||++|+..+.+
T Consensus 197 G~~~g~liviaarpg~GKT~~al~ia~~ 224 (444)
T PRK05595 197 GFQKGDMILIAARPSMGKTTFALNIAEY 224 (444)
T ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHH
Confidence 6888988899999999999999988764
No 387
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=70.66 E-value=2.3 Score=33.58 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=19.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 30 s~~i~~Ge~~~l~G~nGsGKSTLl 53 (280)
T PRK13633 30 NLEVKKGEFLVILGRNGSGKSTIA 53 (280)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 334568999999999999999874
No 388
>PLN03073 ABC transporter F family; Provisional
Probab=70.19 E-value=2.3 Score=38.67 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.0
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.+.+|.|-.|+|.+|.|||||.
T Consensus 196 isl~i~~Ge~~gLvG~NGsGKSTLL 220 (718)
T PLN03073 196 ASVTLAFGRHYGLVGRNGTGKTTFL 220 (718)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHH
Confidence 3445668999999999999999985
No 389
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.19 E-value=2.8 Score=38.77 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=17.2
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
..--+|+|.+|.||||| +|||
T Consensus 25 ~gi~lI~G~nGsGKSSI-ldAI 45 (908)
T COG0419 25 SGIFLIVGPNGAGKSSI-LDAI 45 (908)
T ss_pred CCeEEEECCCCCcHHHH-HHHH
Confidence 44567999999999998 5666
No 390
>PRK08006 replicative DNA helicase; Provisional
Probab=70.12 E-value=4.3 Score=35.15 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=24.6
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|-|..+.|||++|+..+.|
T Consensus 220 Gl~~G~LiiIaarPgmGKTafalnia~~ 247 (471)
T PRK08006 220 GLQPSDLIIVAARPSMGKTTFAMNLCEN 247 (471)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6888988888888899999999997765
No 391
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=69.88 E-value=4.3 Score=33.78 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.8
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.++.+++-..|+|..++|||.+|+...+|
T Consensus 117 ~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 117 EGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred cCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 346777888899999999999999988766
No 392
>PRK06904 replicative DNA helicase; Validated
Probab=69.82 E-value=4.4 Score=35.03 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=24.3
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|-|..+.|||++|++...|
T Consensus 217 Gl~~G~LiiIaarPg~GKTafalnia~~ 244 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTFAMNLCEN 244 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 6888888888898899999999887665
No 393
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=69.77 E-value=4.7 Score=23.71 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=16.6
Q ss_pred eeeeCCCCceEEecCCCeecccccc
Q psy10055 40 ICISTDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 40 ~C~~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
.|.. ....|.|.+ +|.|+.|+.
T Consensus 12 ~C~~--~~G~C~C~~-~~~G~~C~~ 33 (49)
T PF00053_consen 12 TCDP--STGQCVCKP-GTTGPRCDQ 33 (49)
T ss_dssp SEEE--TCEEESBST-TEESTTS-E
T ss_pred cccC--CCCEEeccc-cccCCcCcC
Confidence 5544 446899999 999999975
No 394
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=69.75 E-value=2.4 Score=34.57 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-+|+|.+|.|||+|.
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl 69 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLV 69 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3457999999999999999985
No 395
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=69.67 E-value=2.4 Score=36.77 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-+|+|..|.|||||+
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~ 393 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLL 393 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999986
No 396
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.60 E-value=3.4 Score=35.41 Aligned_cols=33 Identities=42% Similarity=0.595 Sum_probs=25.5
Q ss_pred eccCCCcCCCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 89 CEDGAGMDPPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 89 C~~~~~mvp~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
-+...|..||.-.|++|.-|||||-+|- ||-||
T Consensus 176 lF~~~GI~PPKGVLLYGPPGTGKTLLAk-AVA~~ 208 (406)
T COG1222 176 LFEELGIDPPKGVLLYGPPGTGKTLLAK-AVANQ 208 (406)
T ss_pred HHHHcCCCCCCceEeeCCCCCcHHHHHH-HHHhc
Confidence 3445567899999999999999999883 44443
No 397
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=69.53 E-value=3.3 Score=36.45 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=19.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.++..-+|+|..|+|||++|
T Consensus 211 ~gl~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 211 YDLKPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred ccCCCCcceEEECCCCCcHHHHH
Confidence 34667888999999999999986
No 398
>PRK01156 chromosome segregation protein; Provisional
Probab=69.45 E-value=3 Score=38.19 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=16.6
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
.--+|+|++|.|||+| +|||
T Consensus 24 gi~~I~G~NGsGKSsi-leAI 43 (895)
T PRK01156 24 GINIITGKNGAGKSSI-VDAI 43 (895)
T ss_pred CeEEEECCCCCCHHHH-HHHH
Confidence 3678999999999999 4665
No 399
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=69.24 E-value=2.8 Score=36.05 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++.+|.|..|.||||++
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl 375 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLV 375 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHH
Confidence 33458999999999999999985
No 400
>PTZ00035 Rad51 protein; Provisional
Probab=69.11 E-value=5.1 Score=33.10 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=25.0
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-|+..+.-..|+|..++|||++++-...+
T Consensus 112 gGGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 112 GGGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 346777888999999999999999877654
No 401
>PRK13342 recombination factor protein RarA; Reviewed
Probab=69.04 E-value=2.7 Score=35.26 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=15.5
Q ss_pred ceeEeccCCCCchhhhHH
Q psy10055 100 RELIIGDRQTGKTALAID 117 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~ 117 (124)
--+|+|..|+|||++|.-
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 467899999999999863
No 402
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=68.99 E-value=3.3 Score=35.52 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.7
Q ss_pred ceeEeccCCCCchhhhHHHHHh
Q psy10055 100 RELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.-+|+|..|+|||+|+. +|.|
T Consensus 143 pl~L~G~~G~GKTHLl~-Ai~~ 163 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQ-AAVH 163 (445)
T ss_pred eEEEEcCCCCCHHHHHH-HHHH
Confidence 46899999999999986 4433
No 403
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=68.97 E-value=2.6 Score=36.29 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||||+
T Consensus 30 l~i~~Ge~~~iiG~nGsGKSTLl 52 (529)
T PRK15134 30 LQIEAGETLALVGESGSGKSVTA 52 (529)
T ss_pred EEEeCCCEEEEECCCCCcHHHHH
Confidence 34557999999999999999984
No 404
>KOG1214|consensus
Probab=68.87 E-value=8.1 Score=36.65 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=14.1
Q ss_pred eeeeCC-CCceEEecCCCeec
Q psy10055 40 ICISTD-SGPICECRNLDFEG 59 (124)
Q Consensus 40 ~C~~~~-~~y~C~C~~tg~~G 59 (124)
.|+... +.|+|.|.| ||+|
T Consensus 800 ~c~~hGgs~y~C~CLP-GfsG 819 (1289)
T KOG1214|consen 800 RCVHHGGSTYSCACLP-GFSG 819 (1289)
T ss_pred EEEecCCceEEEeecC-CccC
Confidence 344443 579999999 9985
No 405
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.85 E-value=2.8 Score=36.67 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.5
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
++--+|.|.+|+|||++|.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 35 PQSILLVGASGVGKTTCAR 53 (491)
T ss_pred CceEEEECCCCccHHHHHH
Confidence 5667899999999999885
No 406
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=68.60 E-value=3.6 Score=34.01 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCCCceeEeccCCCCchhhhHHHHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
+.+.-.+|.|+++.|||++|++.|-
T Consensus 144 i~g~gvli~G~sg~GKS~lal~Li~ 168 (304)
T TIGR00679 144 VYGVGVLITGKSGVGKSETALELIN 168 (304)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3477789999999999999998763
No 407
>PRK08760 replicative DNA helicase; Provisional
Probab=68.59 E-value=4.9 Score=34.75 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.7
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.+|-|..+.|||++|+..+.|
T Consensus 225 G~~~G~LivIaarPg~GKTafal~iA~~ 252 (476)
T PRK08760 225 GLQPTDLIILAARPAMGKTTFALNIAEY 252 (476)
T ss_pred CCCCCceEEEEeCCCCChhHHHHHHHHH
Confidence 5888999999999999999999987754
No 408
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=68.52 E-value=3.2 Score=30.01 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.9
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.-+..++|+.+.|||||.- ++++
T Consensus 24 ~~~v~ivG~~~~GKSsli~-~l~~ 46 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLIN-ALTN 46 (196)
T ss_pred CCEEEEEcCCCCCHHHHHH-HHhC
Confidence 4568899999999999865 3333
No 409
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=68.49 E-value=2.3 Score=34.39 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.4
Q ss_pred CcCCCCceeEeccCCCCchhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTAL 114 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~ 114 (124)
.+.+++.-.+||.+|.||||+
T Consensus 26 ~v~~Gei~~LIGPNGAGKTTl 46 (250)
T COG0411 26 EVRPGEIVGLIGPNGAGKTTL 46 (250)
T ss_pred EEcCCeEEEEECCCCCCceee
Confidence 346799999999999999987
No 410
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.48 E-value=3.8 Score=36.98 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=20.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..+..++.-.+|+|..|+|||++|-
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHH
Confidence 3345667888999999999999863
No 411
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=68.30 E-value=2.4 Score=37.85 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.4
Q ss_pred CCCceeEeccCCCCchhhhHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~ 118 (124)
++.-.+|+|.+|+|||+|+.|.
T Consensus 255 ~g~~~~ffGlSGtGKtTLsa~~ 276 (561)
T PTZ00311 255 KGDVTLFFGLSGTGKTTLSADP 276 (561)
T ss_pred CCCEEEEEccCCCCHHHhccCC
Confidence 5778899999999999999873
No 412
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=68.10 E-value=2.7 Score=34.64 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.1
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.+.+|+.-.|+|.+|.|||+|.
T Consensus 17 vsl~i~~Ge~~~l~G~nGsGKSTLl 41 (352)
T PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLI 41 (352)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHH
Confidence 3455678999999999999999985
No 413
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=68.09 E-value=4 Score=35.03 Aligned_cols=22 Identities=45% Similarity=0.480 Sum_probs=17.5
Q ss_pred CCCceeEeccCCCCchhhhHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~ 118 (124)
.|.-.||.|..++|||+||+..
T Consensus 49 aGr~iLiaGppGtGKTAlA~~i 70 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAI 70 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHH
T ss_pred cCcEEEEeCCCCCCchHHHHHH
Confidence 5777889999999999999863
No 414
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=68.07 E-value=3 Score=36.10 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=19.2
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|++-+|.|..|.||||++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~ 372 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLI 372 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 678999999999999999875
No 415
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=67.86 E-value=2.2 Score=37.85 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=17.6
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
+.-.+|+|++|+|||+|+.|
T Consensus 225 g~~~~ffGlSGtGKSTls~~ 244 (526)
T PRK09344 225 GDVALFFGLSGTGKTTLSAD 244 (526)
T ss_pred CcEEEEEeecCCCeeecccc
Confidence 46689999999999998876
No 416
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=67.65 E-value=2.1 Score=37.78 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=13.6
Q ss_pred eeEeccCCCCchhhhH
Q psy10055 101 ELIIGDRQTGKTALAI 116 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~ 116 (124)
=+|.|.||+|||++|-
T Consensus 41 YlfsG~RGvGKTt~Ar 56 (515)
T COG2812 41 YLFSGPRGVGKTTIAR 56 (515)
T ss_pred hhhcCCCCcCchhHHH
Confidence 3589999999999873
No 417
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=67.62 E-value=5.9 Score=23.00 Aligned_cols=28 Identities=21% Similarity=0.624 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCeeeeCC-CCceEEecCCCee
Q psy10055 29 CEEHDPCKHGGICISTD-SGPICECRNLDFE 58 (124)
Q Consensus 29 C~~~nPC~ngG~C~~~~-~~y~C~C~~tg~~ 58 (124)
| ...+|.....|+... +.+.|.|.+ ||.
T Consensus 2 C-~~~~cP~NA~C~~~~dG~eecrCll-gyk 30 (37)
T PF12946_consen 2 C-IDTKCPANAGCFRYDDGSEECRCLL-GYK 30 (37)
T ss_dssp --SSS---TTEEEEEETTSEEEEEE-T-TEE
T ss_pred c-cCccCCCCcccEEcCCCCEEEEeeC-Ccc
Confidence 5 467888888999777 778999999 995
No 418
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=67.55 E-value=3.3 Score=36.77 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.2
Q ss_pred CCCCceeEeccCCCCchhhhHHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~ 118 (124)
.++.-.+|+|.+|+|||+|+.|.
T Consensus 231 ~~g~~~~ffGlSGtGKTTLsad~ 253 (532)
T TIGR00224 231 EKGDVALFFGLSGTGKTTLSTDP 253 (532)
T ss_pred CCCCEEEEEecCCCChhhhhccc
Confidence 45778999999999999999874
No 419
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=67.46 E-value=3.2 Score=35.26 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||||.
T Consensus 280 sl~i~~Ge~~~i~G~NGsGKSTLl 303 (490)
T PRK10938 280 SWQVNPGEHWQIVGPNGAGKSTLL 303 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 445567999999999999999985
No 420
>PRK08840 replicative DNA helicase; Provisional
Probab=67.41 E-value=5.3 Score=34.49 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.1
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.++-|..+.|||++|++...|
T Consensus 213 G~~~g~LiviaarPg~GKTafalnia~~ 240 (464)
T PRK08840 213 GLQGSDLIIVAARPSMGKTTFAMNLCEN 240 (464)
T ss_pred CCCCCceEEEEeCCCCchHHHHHHHHHH
Confidence 5888888888888899999999887665
No 421
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=67.36 E-value=5.4 Score=31.55 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=25.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.|+..+.-.-|+|..+.|||.+|+...+|
T Consensus 32 ~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 32 GGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 446666777789999999999999988776
No 422
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=67.26 E-value=2.9 Score=35.61 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||||.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl 44 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLM 44 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHH
Confidence 344567999999999999999984
No 423
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=67.17 E-value=3 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-.|+|..|.|||+|.
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl 47 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLL 47 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 424
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=67.15 E-value=3.5 Score=29.87 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.7
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.-+.+|+|+.+.|||||. ..++++
T Consensus 18 ~~~i~ivG~~~~GKStli-n~l~~~ 41 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLI-NALTNR 41 (179)
T ss_pred CCEEEEEcCCCCCHHHHH-HHHhCC
Confidence 457789999999999995 455544
No 425
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=67.01 E-value=2.6 Score=37.19 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.2
Q ss_pred CCCceeEeccCCCCchhhhHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~ 118 (124)
++.-.+|+|.+|+|||+|+.|.
T Consensus 208 ~~~~~~ffGlSGtGKtTLsa~~ 229 (508)
T cd00484 208 KGDVALFFGLSGTGKTTLSADP 229 (508)
T ss_pred CCCEEEEEecCCCCHHHhccCc
Confidence 5777899999999999999763
No 426
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.93 E-value=3.1 Score=38.11 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=16.2
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.+--||.|.+|+|||++|.
T Consensus 37 ~HAyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIAR 55 (702)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3555899999999999995
No 427
>PRK07004 replicative DNA helicase; Provisional
Probab=66.92 E-value=5.6 Score=34.22 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=24.5
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+++-.++-|..+.|||++|++.+.|
T Consensus 209 G~~~g~liviaarpg~GKT~~al~ia~~ 236 (460)
T PRK07004 209 GMHGGELIIVAGRPSMGKTAFSMNIGEY 236 (460)
T ss_pred CCCCCceEEEEeCCCCCccHHHHHHHHH
Confidence 6888999999999999999999987654
No 428
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.91 E-value=3.1 Score=36.01 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=15.4
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
+--+|.|..|+|||++|.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 345899999999999985
No 429
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=66.78 E-value=2.8 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.4
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-.|+|.+|.|||+|+-
T Consensus 37 l~i~~Ge~~~ivG~sGsGKSTL~~ 60 (330)
T PRK09473 37 FSLRAGETLGIVGESGSGKSQTAF 60 (330)
T ss_pred EEEcCCCEEEEECCCCchHHHHHH
Confidence 345679999999999999999863
No 430
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=66.74 E-value=3.2 Score=36.42 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=16.1
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
++--+|.|.+|+|||++|.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3456899999999999985
No 431
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=66.66 E-value=3.3 Score=33.71 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-.|+|.+|.|||+|+-
T Consensus 28 l~i~~Ge~~~ivG~sGsGKSTLl~ 51 (330)
T PRK15093 28 MTLTEGEIRGLVGESGSGKSLIAK 51 (330)
T ss_pred EEECCCCEEEEECCCCCCHHHHHH
Confidence 345679999999999999998863
No 432
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=66.64 E-value=3.2 Score=33.43 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.3
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.||||+.
T Consensus 28 l~i~~Gei~gllGpNGaGKSTLl 50 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTTL 50 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHHH
Confidence 33557899999999999999874
No 433
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=66.61 E-value=3.4 Score=36.02 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.6
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|.|..|.|||+++
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~ 383 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLL 383 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344578999999999999999975
No 434
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=66.53 E-value=3.7 Score=28.83 Aligned_cols=18 Identities=50% Similarity=0.571 Sum_probs=14.8
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
..-+|.|..|+||+.+|-
T Consensus 22 ~pvli~GE~GtGK~~~A~ 39 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLAR 39 (138)
T ss_dssp S-EEEECCTTSSHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHH
Confidence 346899999999999874
No 435
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=66.42 E-value=2.9 Score=35.80 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl 48 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLM 48 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHH
Confidence 34567899999999999999985
No 436
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=66.40 E-value=4.2 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=16.1
Q ss_pred ceeEeccCCCCchhhhHHHHH
Q psy10055 100 RELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~ 120 (124)
--.|+|.++.|||+|. |+|.
T Consensus 23 l~~i~G~NGsGKStll-~ai~ 42 (198)
T cd03276 23 VNFIVGNNGSGKSAIL-TALT 42 (198)
T ss_pred eEEEECCCCCcHHHHH-HHHH
Confidence 3479999999999884 7764
No 437
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=66.37 E-value=4.2 Score=30.69 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=16.9
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.++ ..+|+|.+|.|||+|.
T Consensus 20 ~~~g-~~~i~G~nGsGKStll 39 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNII 39 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHH
Confidence 4456 8889999999999986
No 438
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=66.28 E-value=5.8 Score=34.09 Aligned_cols=29 Identities=34% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++..++-.+|.|+.++|||++|+..+.+
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~ 296 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEA 296 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 36777899999999999999999987754
No 439
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=66.24 E-value=5.3 Score=31.02 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=16.9
Q ss_pred CceeEeccCCCCchhhhHHHHHh
Q psy10055 99 SRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
....+.|..|||||.||+-+-+.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~ 42 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALE 42 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35668899999999999877654
No 440
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=66.21 E-value=4.2 Score=32.96 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=21.8
Q ss_pred eEeccCCCcCCCCceeEeccCCCCchhhh
Q psy10055 87 IECEDGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 87 ~~C~~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.-+.| +..|+++=+|+|.+|.|||||.
T Consensus 47 L~~isW-~V~~ge~W~I~G~NGsGKTTLL 74 (257)
T COG1119 47 LGDLSW-QVNPGEHWAIVGPNGAGKTTLL 74 (257)
T ss_pred ccccce-eecCCCcEEEECCCCCCHHHHH
Confidence 344444 3367999999999999999985
No 441
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=66.17 E-value=4.1 Score=34.36 Aligned_cols=21 Identities=48% Similarity=0.659 Sum_probs=17.3
Q ss_pred ceeEeccCCCCchhhhHHHHHh
Q psy10055 100 RELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~~ 121 (124)
--+|.|.||+|||++. +.++.
T Consensus 39 i~~i~GpR~~GKTtll-~~l~~ 59 (398)
T COG1373 39 IILILGPRQVGKTTLL-KLLIK 59 (398)
T ss_pred EEEEECCccccHHHHH-HHHHh
Confidence 5789999999999998 55543
No 442
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=66.12 E-value=3.1 Score=34.24 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.0
Q ss_pred cCCCcCCCCceeEeccCCCCchhhh
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.+.+|+.-.|+|.+|.|||+|.
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl 40 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLI 40 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHH
Confidence 3455678899999999999999986
No 443
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=66.10 E-value=5 Score=32.73 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=17.7
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+..-+|+|.+|+|||+++....
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3457899999999999976543
No 444
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=66.04 E-value=6.7 Score=27.63 Aligned_cols=34 Identities=24% Similarity=0.637 Sum_probs=25.2
Q ss_pred CCCCCCCCeeeeCC-----CCceEEecCC------------CeeccccccC
Q psy10055 32 HDPCKHGGICISTD-----SGPICECRNL------------DFEGIYCEKV 65 (124)
Q Consensus 32 ~nPC~ngG~C~~~~-----~~y~C~C~~t------------g~~G~~Ce~~ 65 (124)
-|-|.++|.|+... .=|.|.|.+| .|.|..||+.
T Consensus 12 Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKk 62 (103)
T PF12955_consen 12 TNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKK 62 (103)
T ss_pred ccCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccc
Confidence 45688999999774 3389999773 4667778765
No 445
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=66.00 E-value=3.3 Score=36.88 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|.+-.|+|.+|.|||||.
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLl 355 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLI 355 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH
Confidence 344567999999999999999985
No 446
>PRK09099 type III secretion system ATPase; Provisional
Probab=65.94 E-value=3.9 Score=35.34 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=28.0
Q ss_pred cceeecccccccee--eEeccCC-CcCCCCceeEeccCCCCchhhh
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGA-GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~-~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+..|.....++. +..++.. .+..|||..|+|.++.|||+|.
T Consensus 135 p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl 180 (441)
T PRK09099 135 PDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLM 180 (441)
T ss_pred CChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHHHHH
Confidence 34444444443333 4444443 2345999999999999999986
No 447
>PRK02224 chromosome segregation protein; Provisional
Probab=65.89 E-value=4.1 Score=37.08 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.4
Q ss_pred CCceeEeccCCCCchhhhHHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
+.--+|+|.+|.|||+| +|+|.
T Consensus 23 ~g~~~i~G~Ng~GKSti-l~ai~ 44 (880)
T PRK02224 23 DGVTVIHGVNGSGKSSL-LEACF 44 (880)
T ss_pred CCeEEEECCCCCCHHHH-HHHHH
Confidence 34788999999999998 67764
No 448
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=65.81 E-value=3.3 Score=36.92 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++.+|+|..|.|||||+
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLl 517 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLA 517 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999986
No 449
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=65.72 E-value=3 Score=33.41 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||++.
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl 45 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTM 45 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHH
Confidence 34568999999999999999974
No 450
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=65.69 E-value=3.2 Score=36.79 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-+|+|.+|.|||||.
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLl 362 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLL 362 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHH
Confidence 344567999999999999999985
No 451
>PLN00023 GTP-binding protein; Provisional
Probab=65.62 E-value=3.6 Score=34.43 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.2
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
.-|.+++|+.++|||+|..-.
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf 41 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLI 41 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 457889999999999996543
No 452
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=65.50 E-value=4.1 Score=25.53 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.7
Q ss_pred eEeccCCCCchhhhHH
Q psy10055 102 LIIGDRQTGKTALAID 117 (124)
Q Consensus 102 li~g~~~~g~t~~~~~ 117 (124)
.|.|..+.|||+++-.
T Consensus 3 ~i~G~~gsGKst~~~~ 18 (69)
T cd02019 3 AITGGSGSGKSTVAKK 18 (69)
T ss_pred EEECCCCCCHHHHHHH
Confidence 5789999999999853
No 453
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=65.46 E-value=3.5 Score=32.56 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.6
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++++-+|+|.+|-|||+|+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~ 48 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLK 48 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 5579999999999999999864
No 454
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=65.41 E-value=3.4 Score=35.33 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl 47 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMM 47 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHH
Confidence 34567999999999999999985
No 455
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=65.40 E-value=4.4 Score=34.74 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.4
Q ss_pred CceeEeccCCCCchhhhHHHHHh
Q psy10055 99 SRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
..-+|+|..|+|||+|+ -+|.|
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~ 163 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKN 163 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHH
Confidence 34678999999999998 45554
No 456
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=65.33 E-value=3.4 Score=34.06 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.4
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||++.
T Consensus 62 ~~i~~Gei~gLlGpNGaGKSTLl 84 (340)
T PRK13536 62 FTVASGECFGLLGPNGAGKSTIA 84 (340)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999999874
No 457
>PHA02542 41 41 helicase; Provisional
Probab=65.23 E-value=5.9 Score=34.38 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=25.0
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.|+.+++-.+|-|..+.|||++|+....|
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~ 213 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAAD 213 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHH
Confidence 36788888899999999999999987765
No 458
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=65.05 E-value=3.6 Score=34.86 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.1
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
..-+|+|..|+|||+|+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 346789999999999973
No 459
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.04 E-value=3.4 Score=33.81 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.5
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|++-.|+|..|.|||+|.
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl 125 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFL 125 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3568999999999999999985
No 460
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=65.00 E-value=3.5 Score=35.53 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-+|+|..|.|||+++
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~ 361 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLA 361 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999985
No 461
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=64.88 E-value=3.7 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||||.
T Consensus 282 sl~i~~Ge~~~l~G~NGsGKSTLl 305 (506)
T PRK13549 282 SFSLRRGEILGIAGLVGAGRTELV 305 (506)
T ss_pred eeEEcCCcEEEEeCCCCCCHHHHH
Confidence 445667999999999999999975
No 462
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=64.86 E-value=3.8 Score=35.02 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.4
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|++-+|.|..|.|||+++
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~ 365 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLL 365 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3558999999999999999975
No 463
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.83 E-value=6.2 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.1
Q ss_pred CceeEeccCCCCchhhhHHHHHh
Q psy10055 99 SRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.-++.+..|+|||.+++-.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 67889999999999977766654
No 464
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=64.68 E-value=3.6 Score=35.33 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLl 306 (510)
T PRK15439 284 LEVRAGEILGLAGVVGAGRTELA 306 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34466999999999999999986
No 465
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=64.65 E-value=4 Score=37.29 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
..||++.+|+|.+|.||||++
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~ 516 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLL 516 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHH
Confidence 568999999999999999997
No 466
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=64.53 E-value=3.7 Score=35.11 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||||.
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl 48 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLM 48 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH
Confidence 344567999999999999999986
No 467
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=64.37 E-value=4.7 Score=36.06 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++...+|+|.+|+|..|.|||+++
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTll 381 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLL 381 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHH
Confidence 344568999999999999999975
No 468
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=64.35 E-value=3.9 Score=35.53 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.5
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|++-+|.|.+|.|||+++
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl 358 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLL 358 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3568999999999999999986
No 469
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=64.34 E-value=3.4 Score=35.47 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl 54 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLM 54 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3567899999999999999986
No 470
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=64.27 E-value=3.6 Score=33.18 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|.|-.|+|.+|.|||+|.
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLl 70 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLL 70 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHH
Confidence 34467999999999999999974
No 471
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=64.25 E-value=3.8 Score=34.33 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.6
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
.-.+|+|.+|+|||++|-
T Consensus 39 ~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 357899999999999974
No 472
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=64.22 E-value=5.2 Score=31.48 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=19.1
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|++-.|+|.+|.|||||.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLl 43 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTAL 43 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 458999999999999999986
No 473
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=64.22 E-value=5.5 Score=33.11 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=23.5
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh-cc
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN-QK 123 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~-q~ 123 (124)
.++-.+.-..|+|..+.|||+||+.+|.+ |+
T Consensus 48 GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~ 79 (322)
T PF00154_consen 48 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQK 79 (322)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CccccCceEEEeCCCCCchhhhHHHHHHhhhc
Confidence 34433444568999999999999999987 43
No 474
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=64.12 E-value=3.8 Score=34.25 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=15.9
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.--.|++|.-|+|||++|.
T Consensus 52 lDHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred cCeEEeeCCCCCcHHHHHH
Confidence 3446799999999999985
No 475
>CHL00195 ycf46 Ycf46; Provisional
Probab=64.10 E-value=5.3 Score=34.88 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.4
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.++.++...|++|..|+|||.+|
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHH
Confidence 34566778999999999999988
No 476
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=64.02 E-value=4 Score=33.09 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.1
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.+|+...|+|.+|.|||+|.
T Consensus 28 ~~GE~VaiIG~SGaGKSTLL 47 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLL 47 (258)
T ss_pred CCCcEEEEECCCCCcHHHHH
Confidence 47899999999999999985
No 477
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=63.91 E-value=3.8 Score=35.39 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.5
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|++-+|+|..|.|||+|+
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~ 366 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLA 366 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3458999999999999999986
No 478
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=63.78 E-value=5.5 Score=34.21 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=18.1
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++..-+++|..|+|||++|-
T Consensus 85 ~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 4456668999999999999974
No 479
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=63.67 E-value=6.2 Score=36.61 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++..++-.+|+|..++|||+||+..+.+
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~ 83 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57777999999999999999999998876
No 480
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=63.67 E-value=3.8 Score=34.98 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLl 296 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELM 296 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHH
Confidence 34567999999999999999874
No 481
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=63.56 E-value=3.8 Score=36.27 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++.+.+|+.-+|+|.+|.|||+|+-
T Consensus 36 s~~v~~Ge~~~lvG~nGsGKSTLl~ 60 (623)
T PRK10261 36 SFSLQRGETLAIVGESGSGKSVTAL 60 (623)
T ss_pred EEEECCCCEEEEECCCCChHHHHHH
Confidence 3445679999999999999999863
No 482
>PRK06749 replicative DNA helicase; Provisional
Probab=63.51 E-value=7.3 Score=33.25 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.4
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
||.+|+-.++-|..+.|||++|++...|
T Consensus 182 Gl~~G~LiiIaarPgmGKTafal~ia~~ 209 (428)
T PRK06749 182 GLQEGDFVVLGARPSMGKTAFALNVGLH 209 (428)
T ss_pred CCCCCcEEEEEeCCCCCchHHHHHHHHH
Confidence 6888888888888899999999988765
No 483
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.49 E-value=4.1 Score=36.65 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.9
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
++--||.|.+|+|||++|.-.
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 344589999999999998643
No 484
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=63.48 E-value=4.3 Score=36.58 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=21.7
Q ss_pred ccCCCcCCCCceeEeccCCCCchhhh
Q psy10055 90 EDGAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 90 ~~~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
..++.+.+|.|-+|.|.+|.|||++-
T Consensus 411 ~l~~~v~~G~~llI~G~SG~GKTsLl 436 (604)
T COG4178 411 ELNFEVRPGERLLITGESGAGKTSLL 436 (604)
T ss_pred cceeeeCCCCEEEEECCCCCCHHHHH
Confidence 33445678999999999999999984
No 485
>PF14516 AAA_35: AAA-like domain
Probab=63.34 E-value=5.9 Score=32.35 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=19.7
Q ss_pred CCCCceeEeccCCCCchhhhHHHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.+|+=-.|.+.||+||||+..-++
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~ 52 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLL 52 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHH
Confidence 357778899999999999976654
No 486
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=63.33 E-value=3.9 Score=34.93 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLl 306 (510)
T PRK09700 284 FSVCRGEILGFAGLVGSGRTELM 306 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34567999999999999999985
No 487
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=63.21 E-value=4 Score=35.44 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++-.|+|.+|.|||||.
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl 365 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLF 365 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 344567999999999999999985
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=63.16 E-value=5.2 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.8
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.++.+.++.|.++.|||++.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll 46 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYL 46 (202)
T ss_pred EcCCeEEEEECCCCCccHHHH
Confidence 345689999999999999875
No 489
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=63.04 E-value=4.1 Score=35.40 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
..+.+|++.+|.|..|.|||||+ +.|
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl-~lL 381 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLI-NLL 381 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHH-HHH
Confidence 33568999999999999999986 444
No 490
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=63.02 E-value=4.3 Score=34.91 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|..-.|+|.+|.|||+|.
T Consensus 306 sl~i~~Ge~~~i~G~nGsGKSTLl 329 (529)
T PRK15134 306 SFTLRPGETLGLVGESGSGKSTTG 329 (529)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH
Confidence 445567999999999999999985
No 491
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=63.00 E-value=4 Score=34.95 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-+|+|.+|.|||||.
T Consensus 304 s~~i~~Ge~~~l~G~NGsGKSTLl 327 (520)
T TIGR03269 304 SLEVKEGEIFGIVGTSGAGKTTLS 327 (520)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH
Confidence 344567999999999999999986
No 492
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.96 E-value=5.6 Score=31.80 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.1
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
++--++.|..|+|||++.-+.+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCchhHHHHhhh
Confidence 5667899999999999998865
No 493
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=62.95 E-value=3.9 Score=36.27 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.9
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+...+|++-+|.|..|.|||||+
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLl 496 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLL 496 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 33558999999999999999986
No 494
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=62.84 E-value=6.3 Score=31.72 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=16.8
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
+.--+|+|..|+|||+++-..
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~ 60 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYV 60 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 345789999999999987543
No 495
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=62.68 E-value=4.1 Score=34.81 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=19.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-+|+|.+|.|||+|.
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl 295 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELM 295 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHH
Confidence 33466899999999999999985
No 496
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=62.64 E-value=5.4 Score=30.87 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=16.1
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
...+|+|.+|.|||+|. |+|
T Consensus 23 ~~~~i~G~NGsGKStll-~ai 42 (247)
T cd03275 23 RFTCIIGPNGSGKSNLM-DAI 42 (247)
T ss_pred CeEEEECCCCCCHHHHH-HHH
Confidence 46789999999999884 444
No 497
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=62.63 E-value=4 Score=33.28 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+.-.|+|.+|.|||+|+-
T Consensus 28 l~i~~Ge~~~lvG~sGsGKSTL~~ 51 (326)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSL 51 (326)
T ss_pred EEECCCCEEEEECCCCChHHHHHH
Confidence 345678999999999999999863
No 498
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=62.56 E-value=4.2 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.2
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||+|.
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl 41 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLL 41 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH
Confidence 344568899999999999999985
No 499
>PLN03073 ABC transporter F family; Provisional
Probab=62.56 E-value=3.9 Score=37.20 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|++..|+|.+|.|||||.
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLL 552 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTIL 552 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHH
Confidence 344568999999999999999974
No 500
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=62.55 E-value=4 Score=33.91 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL 46 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLL 46 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34567899999999999999985
Done!