Query psy10055
Match_columns 124
No_of_seqs 202 out of 1358
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 16:46:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u7u_G Neuregulin 1; signaling 99.1 6.2E-11 2.1E-15 73.7 3.9 40 25-66 7-51 (55)
2 1edm_B Factor IX; epidermal gr 99.0 1.5E-10 5.2E-15 66.0 3.5 38 25-64 2-39 (39)
3 1egf_A Epidermal growth factor 98.9 9E-10 3.1E-14 67.1 4.2 42 25-68 2-48 (53)
4 1a3p_A Epidermal growth factor 98.9 1.3E-09 4.3E-14 64.3 3.8 38 28-67 2-44 (45)
5 1hae_A Heregulin-alpha; growth 98.8 9.1E-10 3.1E-14 69.1 1.6 44 25-70 5-53 (63)
6 2vj3_A Neurogenic locus notch 98.7 9.6E-09 3.3E-13 72.3 4.7 79 17-97 32-114 (135)
7 2k2s_B Micronemal protein 6; m 98.7 2.9E-09 9.9E-14 67.3 1.7 39 25-65 10-51 (61)
8 4d90_A EGF-like repeat and dis 98.7 1.1E-08 3.8E-13 71.8 4.1 75 25-101 51-132 (143)
9 1x7a_L Coagulation factor IX, 98.7 1.5E-08 5E-13 73.0 4.5 70 24-96 46-116 (146)
10 1tpg_A T-plasminogen activator 98.7 1.1E-08 3.8E-13 68.2 3.6 42 25-68 47-90 (91)
11 1k36_A Epiregulin; EGF-like fo 98.7 9.5E-09 3.2E-13 61.2 2.6 38 25-65 2-44 (46)
12 2c4f_L Coagulation factor VII 98.7 1.3E-08 4.4E-13 72.6 3.6 70 25-96 46-119 (142)
13 3h5c_B Vitamin K-dependent pro 98.6 1.3E-08 4.5E-13 79.8 3.4 68 25-96 4-74 (317)
14 2vj3_A Neurogenic locus notch 98.6 3E-08 1E-12 69.7 4.7 72 25-98 4-77 (135)
15 1nql_B Epidermal growth factor 98.6 1.4E-08 4.8E-13 62.2 2.5 35 32-67 11-47 (53)
16 1nfu_B Coagulation factor XA, 98.6 7.9E-09 2.7E-13 78.4 1.0 70 25-96 41-111 (195)
17 1aut_L Activated protein C; se 98.6 3.7E-08 1.3E-12 67.7 4.2 70 25-96 5-84 (114)
18 2vh0_B Activated factor XA lig 98.6 1.2E-08 4E-13 72.3 1.0 70 25-96 41-111 (134)
19 1emn_A Fibrillin; extracellula 98.5 2.2E-07 7.4E-12 60.5 4.9 69 25-97 4-75 (82)
20 3ca7_A Protein spitz; argos, E 98.4 5.1E-08 1.8E-12 59.0 1.5 34 32-66 13-50 (52)
21 4d90_A EGF-like repeat and dis 98.4 1.6E-07 5.6E-12 65.7 3.6 36 27-64 1-38 (143)
22 2fd6_A Urokinase-type plasmino 98.4 3.3E-07 1.1E-11 64.4 4.3 63 34-97 2-69 (122)
23 1lmj_A Fibrillin 1; EGF, calci 98.4 2E-07 6.7E-12 61.1 2.9 68 25-96 2-77 (86)
24 3ltf_D Protein spitz; receptor 98.3 2.3E-07 7.7E-12 57.7 1.8 32 34-66 15-50 (58)
25 1z6c_A Vitamin K-dependent pro 98.3 2.2E-07 7.5E-12 61.1 1.7 61 25-91 2-68 (87)
26 1q4g_A Prostaglandin G/H synth 98.2 3.8E-07 1.3E-11 78.3 2.8 39 26-66 2-42 (553)
27 2bou_A EGF-like module contain 98.2 8.8E-07 3E-11 62.4 3.5 70 25-97 43-129 (143)
28 2i9a_A Urokinase-type plasmino 98.2 1.4E-06 4.8E-11 63.1 4.4 63 34-97 14-81 (145)
29 3oaa_A ATP synthase subunit al 98.1 6.9E-07 2.4E-11 76.4 1.7 50 73-124 134-188 (513)
30 3nt1_A Prostaglandin-endoperox 98.1 1.3E-06 4.5E-11 75.7 3.4 39 26-66 1-41 (587)
31 1z1y_A Ookinete surface protei 98.1 1.4E-06 4.8E-11 63.8 2.5 79 17-97 29-126 (186)
32 1fx0_A ATP synthase alpha chai 98.0 3.3E-06 1.1E-10 72.2 3.3 50 73-124 135-189 (507)
33 1g1s_A P-selectin; selectin, l 98.0 2.8E-06 9.7E-11 60.4 2.5 39 26-66 119-157 (162)
34 1yo8_A Thrombospondin-2; EGF, 97.9 4.3E-06 1.5E-10 73.1 3.5 71 25-98 2-82 (634)
35 2qe7_A ATP synthase subunit al 97.9 3.2E-06 1.1E-10 72.2 2.1 49 74-124 135-188 (502)
36 2ck3_A ATP synthase subunit al 97.9 2.3E-06 7.8E-11 73.2 1.1 48 74-123 135-187 (510)
37 2r9v_A ATP synthase subunit al 97.9 3.3E-06 1.1E-10 72.3 1.7 49 74-124 148-201 (515)
38 3asi_A Neurexin-1-alpha; beta- 97.9 8.6E-06 2.9E-10 66.0 4.0 40 26-66 185-224 (410)
39 1z1y_A Ookinete surface protei 97.8 1.1E-05 3.8E-10 59.0 3.2 64 31-97 9-84 (186)
40 1yo8_A Thrombospondin-2; EGF, 97.7 2.1E-05 7.3E-10 68.7 4.3 81 14-96 27-138 (634)
41 4fbr_A Lectin, myxobacterial h 97.6 2.3E-06 7.9E-11 67.9 -2.8 51 17-69 90-140 (267)
42 3p5b_L Low density lipoprotein 97.6 3.9E-05 1.3E-09 61.9 4.3 65 27-96 1-69 (400)
43 1g1t_A E-selectin; EGF, adhesi 97.6 1.7E-05 5.8E-10 55.8 1.8 38 26-65 119-156 (157)
44 2w86_A Fibrillin-1, fibrillin1 97.6 2.8E-05 9.5E-10 54.9 2.3 34 25-61 3-36 (147)
45 2w2n_E LDL receptor, low-densi 97.6 2.4E-05 8.1E-10 53.4 1.7 65 27-96 25-98 (107)
46 2vj2_A Jagged-1; signalling, p 97.5 2.9E-05 9.8E-10 56.5 2.0 76 16-97 86-164 (169)
47 4fbr_A Lectin, myxobacterial h 97.5 3.1E-06 1.1E-10 67.1 -3.9 58 10-69 150-207 (267)
48 3qcw_A Neurexin-1-alpha; synap 97.4 9.9E-05 3.4E-09 67.8 3.8 42 26-68 1017-1058(1245)
49 1uzk_A Fibrillin-1; glycoprote 97.4 8E-05 2.7E-09 53.3 2.4 37 25-63 2-42 (162)
50 3v65_B Low-density lipoprotein 97.3 5E-05 1.7E-09 60.8 1.3 67 25-96 2-73 (386)
51 1xdt_R Hbegf, heparin-binding 97.3 0.0001 3.6E-09 48.7 2.4 37 25-64 36-77 (79)
52 1apq_A Complement protease C1R 97.3 0.00019 6.5E-09 42.3 3.3 32 25-59 3-43 (53)
53 2bou_A EGF-like module contain 97.3 0.00016 5.4E-09 50.6 3.4 64 27-97 3-78 (143)
54 2vj2_A Jagged-1; signalling, p 97.3 9.8E-05 3.3E-09 53.6 2.2 22 38-63 76-97 (169)
55 1emn_A Fibrillin; extracellula 97.3 0.00012 4E-09 47.3 2.3 43 17-61 30-77 (82)
56 3cfw_A L-selectin; EGF, cell a 97.2 0.00017 5.7E-09 51.1 3.1 39 26-66 119-157 (164)
57 1dx5_I Thrombomodulin; serine 97.2 0.00018 6.1E-09 49.4 2.6 33 25-61 3-36 (118)
58 3e50_C Protransforming growth 97.1 0.00026 8.9E-09 42.8 2.7 32 32-65 13-46 (50)
59 1iox_A Betacellulin; EGF-like 97.1 0.00022 7.5E-09 43.0 2.3 32 32-65 13-46 (50)
60 3qcw_A Neurexin-1-alpha; synap 97.1 0.00024 8.2E-09 65.3 3.3 40 26-66 619-658 (1245)
61 1tpg_A T-plasminogen activator 97.1 0.00017 6E-09 47.6 1.7 64 25-98 16-82 (91)
62 2ygo_A WIF-1, WNT inhibitory f 97.0 0.00038 1.3E-08 52.7 3.0 34 27-66 149-182 (188)
63 2rnl_A Amphiregulin; AR, color 97.0 0.00047 1.6E-08 41.6 2.7 31 32-64 17-49 (50)
64 1dx5_I Thrombomodulin; serine 96.8 0.00043 1.5E-08 47.5 1.8 73 17-96 28-109 (118)
65 2w86_A Fibrillin-1, fibrillin1 96.7 0.00035 1.2E-08 49.2 0.5 43 16-61 91-141 (147)
66 1lmj_A Fibrillin 1; EGF, calci 96.6 0.00045 1.6E-08 44.7 0.6 33 25-60 45-79 (86)
67 2wg3_C Hedgehog-interacting pr 96.4 0.00062 2.1E-08 56.8 0.5 47 26-82 392-438 (463)
68 2kl7_A Fibulin-4; secreted, ca 96.4 0.0023 7.7E-08 40.7 3.0 35 25-59 2-37 (71)
69 3l0o_A Transcription terminati 96.4 0.0014 4.7E-08 55.0 2.4 24 98-122 175-198 (427)
70 1uzk_A Fibrillin-1; glycoprote 96.3 0.00074 2.5E-08 48.2 0.5 35 24-61 120-156 (162)
71 1z6c_A Vitamin K-dependent pro 96.3 0.0011 3.8E-08 43.0 1.2 46 17-67 29-81 (87)
72 2ck3_D ATP synthase subunit be 96.2 0.0022 7.5E-08 54.5 2.9 34 87-122 141-177 (482)
73 3gqb_B V-type ATP synthase bet 96.0 0.0024 8.3E-08 54.0 2.0 46 75-123 121-171 (464)
74 2c4f_L Coagulation factor VII 96.0 0.0038 1.3E-07 43.9 2.7 38 26-65 85-130 (142)
75 1gl4_A Nidogen-1, entactin; im 96.0 0.0021 7.1E-08 51.3 1.4 39 24-64 3-45 (285)
76 1fx0_B ATP synthase beta chain 95.9 0.0042 1.5E-07 52.9 3.0 25 98-122 165-189 (498)
77 3v65_B Low-density lipoprotein 95.8 0.0029 1E-07 50.4 1.6 46 16-64 27-83 (386)
78 3m0c_C LDL receptor, low-densi 95.8 0.0064 2.2E-07 53.8 3.9 65 27-95 308-380 (791)
79 2w2n_E LDL receptor, low-densi 95.7 0.0017 5.9E-08 44.0 0.1 41 17-60 54-100 (107)
80 1nfu_B Coagulation factor XA, 95.7 0.0046 1.6E-07 46.5 2.2 36 27-66 82-123 (195)
81 3gqb_A V-type ATP synthase alp 95.5 0.0049 1.7E-07 53.4 1.9 43 78-123 198-245 (578)
82 2c61_A A-type ATP synthase non 95.5 0.0038 1.3E-07 52.8 1.2 35 87-123 140-181 (469)
83 3h5c_B Vitamin K-dependent pro 95.4 0.017 5.9E-07 44.7 4.7 40 17-60 30-76 (317)
84 2jkh_L Factor X light chain; p 95.4 0.0082 2.8E-07 36.0 2.1 34 27-63 2-40 (55)
85 3fcs_B Integrin beta-3; beta p 95.3 0.0062 2.1E-07 53.6 1.9 37 28-66 436-475 (690)
86 3vr4_A V-type sodium ATPase ca 95.2 0.0049 1.7E-07 53.6 1.1 34 87-123 220-256 (600)
87 1x7a_L Coagulation factor IX, 95.2 0.0098 3.4E-07 42.2 2.5 38 24-65 83-127 (146)
88 3mfy_A V-type ATP synthase alp 95.1 0.0032 1.1E-07 54.6 -0.2 43 78-123 204-251 (588)
89 3vr4_D V-type sodium ATPase su 95.0 0.011 3.8E-07 50.0 2.7 34 87-123 139-175 (465)
90 2ygq_A WIF-1, WNT inhibitory f 95.0 0.016 5.3E-07 46.3 3.5 29 33-65 185-213 (324)
91 2ygq_A WIF-1, WNT inhibitory f 95.0 0.013 4.6E-07 46.6 3.0 33 27-65 149-181 (324)
92 2gy5_A Angiopoietin-1 receptor 95.0 0.012 4E-07 48.7 2.7 29 34-65 204-232 (423)
93 3fcs_B Integrin beta-3; beta p 95.0 0.02 6.8E-07 50.4 4.3 45 19-69 514-567 (690)
94 2vh0_B Activated factor XA lig 95.0 0.011 3.8E-07 41.1 2.2 35 27-65 82-122 (134)
95 1klo_A Laminin; glycoprotein; 94.9 0.015 5E-07 41.9 2.6 30 34-64 2-34 (162)
96 3ice_A Transcription terminati 94.8 0.016 5.5E-07 48.5 3.0 29 95-123 171-201 (422)
97 1n7d_A LDL receptor, low-densi 94.7 0.021 7.1E-07 49.4 3.5 64 28-96 291-363 (699)
98 1sky_E F1-ATPase, F1-ATP synth 94.7 0.014 4.7E-07 49.4 2.3 26 98-123 151-176 (473)
99 3p5b_L Low density lipoprotein 94.5 0.014 4.8E-07 46.8 2.0 40 17-59 25-70 (400)
100 2obl_A ESCN; ATPase, hydrolase 94.4 0.02 6.8E-07 46.0 2.6 29 94-123 67-95 (347)
101 1szb_A Mannose binding lectin- 94.4 0.028 9.6E-07 40.0 3.2 35 25-63 123-166 (170)
102 2gy5_A Angiopoietin-1 receptor 94.1 0.043 1.5E-06 45.3 4.2 34 28-64 245-278 (423)
103 2dpy_A FLII, flagellum-specifi 93.7 0.04 1.4E-06 45.6 3.2 30 93-123 152-181 (438)
104 3zyj_B Netrin-G1; cell adhesio 93.5 0.017 5.7E-07 48.4 0.7 29 32-64 370-398 (426)
105 1aut_L Activated protein C; se 93.3 0.055 1.9E-06 36.4 2.9 24 40-64 67-94 (114)
106 4aqs_A Laminin subunit beta-1; 93.2 0.019 6.6E-07 48.0 0.6 37 26-64 487-525 (525)
107 2wg3_C Hedgehog-interacting pr 93.1 0.017 5.7E-07 48.1 0.0 43 17-65 412-456 (463)
108 1kig_L Factor XA; glycoprotein 92.6 0.037 1.3E-06 32.6 1.1 29 32-63 5-37 (51)
109 2p28_B Integrin beta-2; hybrid 92.3 0.063 2.2E-06 40.7 2.3 34 32-70 142-181 (217)
110 2zts_A Putative uncharacterize 92.0 0.083 2.8E-06 38.2 2.5 30 92-121 24-53 (251)
111 1nzi_A Complement C1S componen 91.9 0.13 4.5E-06 35.7 3.4 36 25-63 116-157 (159)
112 3t5o_A Complement component C6 91.8 0.08 2.7E-06 47.5 2.6 40 25-66 496-535 (913)
113 3k6s_B Integrin beta-2; cell r 91.5 0.077 2.6E-06 46.7 2.1 42 17-64 542-592 (687)
114 2dr3_A UPF0273 protein PH0284; 91.0 0.13 4.6E-06 37.1 2.8 30 92-121 17-46 (247)
115 1kli_L Factor VIIA; extrinsic 90.7 0.16 5.5E-06 31.9 2.6 38 24-64 3-46 (69)
116 3io5_A Recombination and repai 89.7 0.16 5.6E-06 41.2 2.5 28 93-121 24-51 (333)
117 2p28_B Integrin beta-2; hybrid 89.7 0.12 4.2E-06 39.1 1.6 34 26-65 177-215 (217)
118 3ec2_A DNA replication protein 89.6 0.14 4.9E-06 35.8 1.8 25 92-116 32-56 (180)
119 1n7d_A LDL receptor, low-densi 89.5 0.28 9.7E-06 42.3 3.9 45 16-63 318-372 (699)
120 2cvh_A DNA repair and recombin 88.9 0.27 9.3E-06 34.9 2.9 27 94-120 16-42 (220)
121 1jbk_A CLPB protein; beta barr 88.2 0.18 6.1E-06 34.2 1.5 21 98-118 43-63 (195)
122 3k6s_B Integrin beta-2; cell r 88.1 0.3 1E-05 43.0 3.2 32 34-70 483-520 (687)
123 3bh0_A DNAB-like replicative h 87.6 0.36 1.2E-05 37.6 3.1 29 93-121 63-91 (315)
124 3vaa_A Shikimate kinase, SK; s 87.6 0.25 8.6E-06 35.3 2.0 24 93-116 20-43 (199)
125 1f2t_A RAD50 ABC-ATPase; DNA d 87.2 0.28 9.4E-06 34.2 2.0 20 99-119 24-43 (149)
126 1n0w_A DNA repair protein RAD5 87.2 0.34 1.2E-05 34.9 2.6 29 93-121 19-47 (243)
127 3h4m_A Proteasome-activating n 86.9 0.33 1.1E-05 36.1 2.4 22 95-116 48-69 (285)
128 2bz6_L Blood coagulation facto 86.8 0.33 1.1E-05 28.6 1.9 27 34-63 8-39 (53)
129 4aqs_A Laminin subunit beta-1; 86.2 0.31 1.1E-05 40.6 2.1 49 14-64 420-475 (525)
130 2w0m_A SSO2452; RECA, SSPF, un 85.9 0.44 1.5E-05 33.7 2.5 26 94-119 19-44 (235)
131 3v64_C Agrin; beta propeller, 85.7 0.35 1.2E-05 37.7 2.1 35 27-64 2-40 (349)
132 3cf0_A Transitional endoplasmi 85.6 0.42 1.4E-05 36.6 2.4 22 95-116 46-67 (301)
133 1cr0_A DNA primase/helicase; R 85.6 0.59 2E-05 35.3 3.2 28 93-120 30-57 (296)
134 3co5_A Putative two-component 85.4 0.3 1E-05 33.4 1.4 19 98-116 27-45 (143)
135 2p65_A Hypothetical protein PF 85.4 0.24 8.4E-06 33.7 0.9 21 98-118 43-63 (187)
136 2zr9_A Protein RECA, recombina 85.2 0.45 1.5E-05 37.9 2.5 29 93-121 56-84 (349)
137 1nlf_A Regulatory protein REPA 85.0 0.48 1.6E-05 35.7 2.5 27 94-120 26-52 (279)
138 3llu_A RAS-related GTP-binding 85.0 0.45 1.5E-05 33.4 2.2 23 98-121 20-42 (196)
139 3n70_A Transport activator; si 84.8 0.35 1.2E-05 33.0 1.5 19 98-116 24-42 (145)
140 3bos_A Putative DNA replicatio 84.8 0.42 1.4E-05 33.9 2.0 21 97-117 51-71 (242)
141 2i1q_A DNA repair and recombin 84.8 0.44 1.5E-05 36.7 2.2 29 93-121 93-121 (322)
142 1lv7_A FTSH; alpha/beta domain 84.5 0.46 1.6E-05 35.1 2.1 21 96-116 43-63 (257)
143 1ijq_A LDL receptor, low-densi 84.5 0.97 3.3E-05 34.4 4.0 36 23-62 264-314 (316)
144 2r6a_A DNAB helicase, replicat 84.5 0.62 2.1E-05 38.0 3.1 28 94-121 199-226 (454)
145 2qz4_A Paraplegin; AAA+, SPG7, 84.5 0.49 1.7E-05 34.5 2.2 21 96-116 37-57 (262)
146 3bgw_A DNAB-like replicative h 84.3 0.63 2.1E-05 38.3 3.1 28 94-121 193-220 (444)
147 2chg_A Replication factor C sm 84.3 0.38 1.3E-05 33.3 1.5 17 101-117 41-57 (226)
148 2q6t_A DNAB replication FORK h 84.2 0.64 2.2E-05 37.8 3.1 28 94-121 196-223 (444)
149 2ehv_A Hypothetical protein PH 84.1 0.42 1.4E-05 34.5 1.7 26 94-119 26-51 (251)
150 2wph_E Coagulation factor IXA 84.0 0.73 2.5E-05 27.8 2.5 24 40-64 12-40 (59)
151 1v5w_A DMC1, meiotic recombina 84.0 0.6 2.1E-05 36.8 2.7 29 93-121 117-145 (343)
152 2z43_A DNA repair and recombin 83.9 0.57 1.9E-05 36.4 2.5 29 93-121 102-130 (324)
153 1njg_A DNA polymerase III subu 83.7 0.41 1.4E-05 33.4 1.5 19 99-117 46-64 (250)
154 1ixz_A ATP-dependent metallopr 83.7 0.61 2.1E-05 34.3 2.5 22 95-116 46-67 (254)
155 4a1f_A DNAB helicase, replicat 83.5 0.73 2.5E-05 36.9 3.1 28 94-121 42-69 (338)
156 2x8a_A Nuclear valosin-contain 83.0 0.64 2.2E-05 35.5 2.5 24 93-116 39-62 (274)
157 3b9p_A CG5977-PA, isoform A; A 83.0 0.56 1.9E-05 35.2 2.1 20 97-116 53-72 (297)
158 2a9k_A RAS-related protein RAL 82.8 0.71 2.4E-05 31.3 2.4 22 98-120 18-39 (187)
159 1htw_A HI0065; nucleotide-bind 82.7 0.47 1.6E-05 33.6 1.5 22 94-115 29-50 (158)
160 1z6g_A Guanylate kinase; struc 82.7 0.6 2.1E-05 34.2 2.1 23 93-115 18-40 (218)
161 4a74_A DNA repair and recombin 82.6 0.59 2E-05 33.3 2.0 26 94-119 21-46 (231)
162 2r62_A Cell division protease 82.5 0.49 1.7E-05 35.0 1.6 20 97-116 43-62 (268)
163 2w58_A DNAI, primosome compone 82.4 0.58 2E-05 33.0 1.9 18 99-116 55-72 (202)
164 2qmh_A HPR kinase/phosphorylas 82.3 0.62 2.1E-05 35.3 2.1 23 97-119 33-55 (205)
165 3qks_A DNA double-strand break 82.2 0.62 2.1E-05 33.9 2.0 20 99-119 24-43 (203)
166 1svi_A GTP-binding protein YSX 82.1 0.74 2.5E-05 31.7 2.3 23 98-121 23-45 (195)
167 1s96_A Guanylate kinase, GMP k 82.0 0.63 2.2E-05 34.6 2.0 23 93-115 11-33 (219)
168 3lda_A DNA repair protein RAD5 81.9 0.8 2.7E-05 37.4 2.8 30 92-121 172-201 (400)
169 3uk6_A RUVB-like 2; hexameric 81.9 0.72 2.5E-05 35.5 2.4 22 96-117 68-89 (368)
170 1d2n_A N-ethylmaleimide-sensit 81.1 0.57 2E-05 34.9 1.5 20 97-116 63-82 (272)
171 3eie_A Vacuolar protein sortin 81.1 0.96 3.3E-05 34.8 2.8 22 95-116 48-69 (322)
172 1u94_A RECA protein, recombina 81.1 0.83 2.8E-05 36.6 2.6 29 93-121 58-86 (356)
173 2bbw_A Adenylate kinase 4, AK4 81.1 0.72 2.5E-05 34.0 2.0 30 87-116 16-45 (246)
174 3syl_A Protein CBBX; photosynt 81.0 0.7 2.4E-05 34.7 2.0 19 98-116 67-85 (309)
175 2kjq_A DNAA-related protein; s 80.8 0.77 2.6E-05 31.9 2.0 21 97-117 35-55 (149)
176 1xwi_A SKD1 protein; VPS4B, AA 80.7 1 3.5E-05 35.0 2.9 22 95-116 42-63 (322)
177 1iy2_A ATP-dependent metallopr 80.6 0.9 3.1E-05 34.0 2.5 19 98-116 73-91 (278)
178 2qby_A CDC6 homolog 1, cell di 80.5 0.77 2.6E-05 34.9 2.1 21 97-117 44-64 (386)
179 3tqf_A HPR(Ser) kinase; transf 80.5 0.79 2.7E-05 34.2 2.1 24 97-120 15-38 (181)
180 3hr8_A Protein RECA; alpha and 80.3 0.8 2.8E-05 36.9 2.2 29 93-121 56-84 (356)
181 1q57_A DNA primase/helicase; d 80.2 0.74 2.5E-05 37.8 2.0 28 94-121 238-265 (503)
182 1ofh_A ATP-dependent HSL prote 80.0 0.88 3E-05 33.8 2.2 19 98-116 50-68 (310)
183 1hqc_A RUVB; extended AAA-ATPa 79.5 0.87 3E-05 34.3 2.1 20 98-117 38-57 (324)
184 1in4_A RUVB, holliday junction 79.4 0.87 3E-05 35.4 2.1 19 98-116 51-69 (334)
185 2cbz_A Multidrug resistance-as 79.4 0.58 2E-05 35.0 1.1 23 93-115 26-48 (237)
186 3m0c_C LDL receptor, low-densi 79.4 0.78 2.7E-05 40.5 2.0 45 16-63 336-390 (791)
187 1g6h_A High-affinity branched- 79.3 0.77 2.6E-05 34.7 1.7 24 92-115 27-50 (257)
188 3pfi_A Holliday junction ATP-d 79.3 0.9 3.1E-05 34.7 2.1 20 98-117 55-74 (338)
189 2bjv_A PSP operon transcriptio 79.2 0.71 2.4E-05 34.1 1.5 18 99-116 30-47 (265)
190 1pui_A ENGB, probable GTP-bind 79.2 0.97 3.3E-05 31.7 2.1 23 93-115 21-43 (210)
191 1xp8_A RECA protein, recombina 79.0 1.1 3.6E-05 36.2 2.5 29 93-121 69-97 (366)
192 3con_A GTPase NRAS; structural 78.8 0.83 2.8E-05 31.4 1.6 20 99-118 22-41 (190)
193 2v1u_A Cell division control p 78.6 0.9 3.1E-05 34.6 1.9 21 97-117 43-63 (387)
194 3t15_A Ribulose bisphosphate c 78.5 1.1 3.8E-05 34.2 2.5 22 95-116 33-54 (293)
195 1pzn_A RAD51, DNA repair and r 78.5 1.1 3.6E-05 35.6 2.4 30 92-121 125-154 (349)
196 3lxw_A GTPase IMAP family memb 78.4 1.1 3.8E-05 33.3 2.4 26 97-123 20-45 (247)
197 1l8q_A Chromosomal replication 78.4 0.97 3.3E-05 34.5 2.0 19 98-116 37-55 (324)
198 3ihw_A Centg3; RAS, centaurin, 78.3 0.85 2.9E-05 31.8 1.6 20 98-117 20-39 (184)
199 3auy_A DNA double-strand break 78.3 0.93 3.2E-05 35.9 2.0 20 99-119 26-45 (371)
200 3tif_A Uncharacterized ABC tra 78.2 0.67 2.3E-05 34.7 1.1 23 93-115 26-48 (235)
201 3c5c_A RAS-like protein 12; GD 78.1 0.88 3E-05 31.7 1.6 19 99-117 22-40 (187)
202 3kkq_A RAS-related protein M-R 78.0 0.9 3.1E-05 31.0 1.6 20 97-116 17-36 (183)
203 3lnc_A Guanylate kinase, GMP k 78.0 0.81 2.8E-05 33.3 1.4 23 93-115 22-44 (231)
204 2jeo_A Uridine-cytidine kinase 78.0 0.94 3.2E-05 33.4 1.8 22 95-116 22-43 (245)
205 3pqc_A Probable GTP-binding pr 77.8 0.93 3.2E-05 31.0 1.6 17 99-115 24-40 (195)
206 2ff7_A Alpha-hemolysin translo 77.8 0.6 2.1E-05 35.3 0.7 23 93-115 30-52 (247)
207 1sxj_C Activator 1 40 kDa subu 77.7 0.85 2.9E-05 35.2 1.6 16 101-116 49-64 (340)
208 1mv5_A LMRA, multidrug resista 77.7 0.63 2.1E-05 34.9 0.8 22 94-115 24-45 (243)
209 3dz8_A RAS-related protein RAB 77.7 0.91 3.1E-05 31.5 1.6 22 99-121 24-45 (191)
210 4b4t_L 26S protease subunit RP 77.7 1.1 3.8E-05 37.2 2.4 23 94-116 211-233 (437)
211 4b4t_M 26S protease regulatory 77.6 1.1 3.8E-05 37.1 2.4 24 93-116 210-233 (434)
212 4b4t_J 26S protease regulatory 77.5 1.2 4.1E-05 36.8 2.5 24 93-116 177-200 (405)
213 1g8p_A Magnesium-chelatase 38 77.5 0.71 2.4E-05 35.1 1.0 17 100-116 47-63 (350)
214 2ghi_A Transport protein; mult 77.4 0.73 2.5E-05 35.0 1.1 22 94-115 42-63 (260)
215 3qkt_A DNA double-strand break 77.3 1 3.6E-05 35.1 2.0 20 99-119 24-43 (339)
216 1sxj_E Activator 1 40 kDa subu 77.3 0.88 3E-05 34.8 1.5 16 101-116 39-54 (354)
217 2ged_A SR-beta, signal recogni 77.2 0.98 3.3E-05 31.1 1.6 19 98-116 48-66 (193)
218 3cbq_A GTP-binding protein REM 77.1 0.97 3.3E-05 31.9 1.6 18 99-116 24-41 (195)
219 2yz2_A Putative ABC transporte 77.1 0.75 2.6E-05 35.0 1.1 23 93-115 28-50 (266)
220 1sgw_A Putative ABC transporte 77.1 0.68 2.3E-05 34.4 0.8 22 94-115 31-52 (214)
221 3c8u_A Fructokinase; YP_612366 77.0 1 3.6E-05 32.3 1.8 20 96-115 20-39 (208)
222 2ixe_A Antigen peptide transpo 77.0 0.76 2.6E-05 35.2 1.1 22 94-115 41-62 (271)
223 1sxj_D Activator 1 41 kDa subu 76.8 0.92 3.2E-05 34.4 1.5 16 101-116 61-76 (353)
224 2pcj_A ABC transporter, lipopr 76.8 0.65 2.2E-05 34.4 0.7 22 94-115 26-47 (224)
225 1oix_A RAS-related protein RAB 76.8 0.99 3.4E-05 31.7 1.6 16 100-115 31-46 (191)
226 2qp9_X Vacuolar protein sortin 76.8 1.5 5.3E-05 34.4 2.9 22 95-116 81-102 (355)
227 4bas_A ADP-ribosylation factor 76.8 1 3.5E-05 31.0 1.6 20 97-116 16-35 (199)
228 2qby_B CDC6 homolog 3, cell di 76.7 0.92 3.1E-05 34.9 1.5 20 98-117 45-64 (384)
229 1moz_A ARL1, ADP-ribosylation 76.7 0.98 3.4E-05 30.7 1.5 20 97-116 17-36 (183)
230 2olj_A Amino acid ABC transpor 76.6 0.78 2.7E-05 35.1 1.1 23 93-115 45-67 (263)
231 3lxx_A GTPase IMAP family memb 76.6 1.4 4.7E-05 32.1 2.4 24 98-122 29-52 (239)
232 2zu0_C Probable ATP-dependent 76.5 0.79 2.7E-05 35.0 1.1 23 93-115 41-63 (267)
233 2h57_A ADP-ribosylation factor 76.5 1 3.6E-05 31.1 1.6 19 98-116 21-39 (190)
234 2c9o_A RUVB-like 1; hexameric 76.4 1.3 4.5E-05 36.0 2.4 22 95-116 60-81 (456)
235 4b4t_K 26S protease regulatory 76.3 1.3 4.3E-05 36.7 2.3 23 94-116 202-224 (428)
236 1fnn_A CDC6P, cell division co 76.3 0.97 3.3E-05 34.6 1.5 18 100-117 46-63 (389)
237 1b0u_A Histidine permease; ABC 76.2 0.82 2.8E-05 34.8 1.1 23 93-115 27-49 (262)
238 2atv_A RERG, RAS-like estrogen 76.2 1.1 3.7E-05 31.2 1.6 19 98-116 28-46 (196)
239 2oil_A CATX-8, RAS-related pro 76.1 1.1 3.7E-05 31.0 1.6 18 99-116 26-43 (193)
240 4fcw_A Chaperone protein CLPB; 75.9 1.1 3.8E-05 33.5 1.7 19 98-116 47-65 (311)
241 4g1u_C Hemin import ATP-bindin 75.9 0.72 2.5E-05 35.3 0.7 22 94-115 33-54 (266)
242 2fg5_A RAB-22B, RAS-related pr 75.9 1.1 3.8E-05 31.2 1.6 19 98-116 23-41 (192)
243 2d2e_A SUFC protein; ABC-ATPas 75.8 0.73 2.5E-05 34.7 0.7 23 93-115 24-46 (250)
244 1jr3_A DNA polymerase III subu 75.8 1 3.5E-05 34.5 1.5 18 99-116 39-56 (373)
245 2pze_A Cystic fibrosis transme 75.8 0.74 2.5E-05 34.2 0.7 22 94-115 30-51 (229)
246 2qi9_C Vitamin B12 import ATP- 75.7 0.75 2.5E-05 34.9 0.7 23 93-115 21-43 (249)
247 3reg_A RHO-like small GTPase; 75.6 1.1 3.9E-05 31.0 1.6 18 99-116 24-41 (194)
248 3oes_A GTPase rhebl1; small GT 75.6 1.1 3.8E-05 31.3 1.6 19 98-116 24-42 (201)
249 1knx_A Probable HPR(Ser) kinas 75.6 1.3 4.3E-05 35.4 2.1 23 97-119 146-168 (312)
250 3tkl_A RAS-related protein RAB 75.5 1.2 4E-05 30.7 1.6 23 97-119 15-37 (196)
251 2a5j_A RAS-related protein RAB 75.5 1.1 3.9E-05 30.9 1.6 18 99-116 22-39 (191)
252 2qen_A Walker-type ATPase; unk 75.3 1.4 4.7E-05 33.1 2.1 20 99-118 32-51 (350)
253 2vhj_A Ntpase P4, P4; non- hyd 75.3 1 3.5E-05 36.4 1.4 29 93-121 118-146 (331)
254 1vpl_A ABC transporter, ATP-bi 75.3 0.9 3.1E-05 34.6 1.1 23 93-115 36-58 (256)
255 2il1_A RAB12; G-protein, GDP, 75.2 1.2 4E-05 31.1 1.6 17 100-116 28-44 (192)
256 2fna_A Conserved hypothetical 75.2 1.4 4.7E-05 33.1 2.1 21 99-119 31-51 (357)
257 2q3h_A RAS homolog gene family 75.1 1.2 4.1E-05 31.0 1.6 20 97-116 19-38 (201)
258 1fzq_A ADP-ribosylation factor 75.0 1.2 4.1E-05 30.8 1.6 20 98-117 16-35 (181)
259 1z06_A RAS-related protein RAB 75.0 1.2 4.1E-05 30.7 1.6 18 99-116 21-38 (189)
260 2gf9_A RAS-related protein RAB 74.9 1.2 4.2E-05 30.7 1.6 17 100-116 24-40 (189)
261 2nq2_C Hypothetical ABC transp 74.9 0.82 2.8E-05 34.7 0.7 23 93-115 26-48 (253)
262 1h65_A Chloroplast outer envel 74.7 1.6 5.5E-05 32.6 2.4 24 98-122 39-62 (270)
263 1znw_A Guanylate kinase, GMP k 74.6 1.5 5E-05 31.5 2.0 22 94-115 16-37 (207)
264 1iqp_A RFCS; clamp loader, ext 74.6 1.2 3.9E-05 33.4 1.5 17 101-117 49-65 (327)
265 1ksh_A ARF-like protein 2; sma 74.6 1.3 4.3E-05 30.3 1.6 20 97-116 17-36 (186)
266 3gfo_A Cobalt import ATP-bindi 74.5 0.84 2.9E-05 35.3 0.7 22 94-115 30-51 (275)
267 2p5s_A RAS and EF-hand domain 74.4 1.3 4.3E-05 31.0 1.6 19 98-116 28-46 (199)
268 4eun_A Thermoresistant glucoki 74.3 1.5 5.1E-05 31.2 2.0 21 96-116 27-47 (200)
269 2ihy_A ABC transporter, ATP-bi 74.3 0.84 2.9E-05 35.2 0.7 23 93-115 42-64 (279)
270 2h17_A ADP-ribosylation factor 74.3 1.2 4.2E-05 30.5 1.5 19 98-116 21-39 (181)
271 2v9p_A Replication protein E1; 74.2 1.3 4.5E-05 34.9 1.8 24 93-116 121-144 (305)
272 2o52_A RAS-related protein RAB 74.2 1.3 4.4E-05 31.2 1.6 18 99-116 26-43 (200)
273 1ji0_A ABC transporter; ATP bi 74.2 0.86 2.9E-05 34.1 0.7 22 94-115 28-49 (240)
274 2qgz_A Helicase loader, putati 74.1 1.4 4.9E-05 34.1 2.0 19 98-116 152-170 (308)
275 2atx_A Small GTP binding prote 74.1 1.3 4.4E-05 30.6 1.6 19 99-117 19-37 (194)
276 2g3y_A GTP-binding protein GEM 74.1 1.3 4.4E-05 32.4 1.6 19 99-117 38-56 (211)
277 1zd9_A ADP-ribosylation factor 73.9 1.3 4.6E-05 30.6 1.6 18 99-116 23-40 (188)
278 2b6h_A ADP-ribosylation factor 73.6 1.3 4.6E-05 30.9 1.6 20 98-117 29-48 (192)
279 1um8_A ATP-dependent CLP prote 73.6 1.6 5.6E-05 34.0 2.2 20 97-116 71-90 (376)
280 3q3j_B RHO-related GTP-binding 73.5 1.4 4.7E-05 31.6 1.6 20 98-117 27-46 (214)
281 1gwn_A RHO-related GTP-binding 73.4 1.4 4.6E-05 31.5 1.6 19 99-117 29-47 (205)
282 1ypw_A Transitional endoplasmi 73.4 1.7 5.8E-05 38.3 2.5 25 92-116 232-256 (806)
283 3d8b_A Fidgetin-like protein 1 73.4 1.5 5.3E-05 34.3 2.0 20 97-116 116-135 (357)
284 1zj6_A ADP-ribosylation factor 73.4 1.4 4.8E-05 30.3 1.6 23 97-119 15-37 (187)
285 3kta_A Chromosome segregation 73.2 1.7 5.8E-05 30.0 2.0 19 100-119 28-46 (182)
286 2x77_A ADP-ribosylation factor 73.1 1.4 4.7E-05 30.3 1.5 20 97-116 21-40 (189)
287 2chq_A Replication factor C sm 73.1 1.3 4.6E-05 32.8 1.6 17 101-117 41-57 (319)
288 1m2o_B GTP-binding protein SAR 73.1 1.4 4.9E-05 30.7 1.6 23 98-121 23-45 (190)
289 2ew1_A RAS-related protein RAB 73.0 1.4 4.8E-05 31.4 1.6 18 99-116 27-44 (201)
290 2hup_A RAS-related protein RAB 73.0 1.4 4.8E-05 31.0 1.6 19 99-117 30-48 (201)
291 2j1l_A RHO-related GTP-binding 73.0 1.4 4.8E-05 31.4 1.6 18 99-116 35-52 (214)
292 2zan_A Vacuolar protein sortin 72.8 1.7 5.7E-05 35.4 2.2 21 96-116 165-185 (444)
293 1sxj_B Activator 1 37 kDa subu 72.6 1.4 4.7E-05 32.8 1.5 17 101-117 45-61 (323)
294 2gco_A H9, RHO-related GTP-bin 72.6 1.5 5.1E-05 30.8 1.6 18 99-116 26-43 (201)
295 2fv8_A H6, RHO-related GTP-bin 72.6 1.5 5E-05 30.9 1.6 23 98-121 25-47 (207)
296 3vfd_A Spastin; ATPase, microt 72.4 1.7 5.7E-05 34.4 2.0 20 97-116 147-166 (389)
297 4b4t_H 26S protease regulatory 72.4 1.7 5.7E-05 36.6 2.1 24 93-116 238-261 (467)
298 3hws_A ATP-dependent CLP prote 72.3 1.8 6.3E-05 33.7 2.2 20 97-116 50-69 (363)
299 2f7s_A C25KG, RAS-related prot 72.1 1.5 5.3E-05 30.8 1.6 22 99-121 26-47 (217)
300 1ko7_A HPR kinase/phosphatase; 72.1 1.7 5.9E-05 34.6 2.0 24 97-120 143-166 (314)
301 3cph_A RAS-related protein SEC 71.9 1.6 5.4E-05 30.4 1.6 20 97-116 19-38 (213)
302 2r44_A Uncharacterized protein 71.9 0.93 3.2E-05 34.6 0.4 19 98-116 46-64 (331)
303 1f6b_A SAR1; gtpases, N-termin 71.9 1.5 5.1E-05 30.9 1.5 19 98-116 25-43 (198)
304 3l0i_B RAS-related protein RAB 71.7 1.5 5.1E-05 30.6 1.4 17 99-115 34-50 (199)
305 4gzl_A RAS-related C3 botulinu 71.6 1.6 5.5E-05 30.8 1.6 19 98-116 30-48 (204)
306 2bbs_A Cystic fibrosis transme 71.3 1.3 4.3E-05 34.5 1.0 22 94-115 60-81 (290)
307 2z4s_A Chromosomal replication 71.1 1.5 5.2E-05 35.7 1.6 18 99-116 131-148 (440)
308 2yc2_C IFT27, small RAB-relate 70.7 1.1 3.7E-05 31.1 0.5 19 98-116 20-38 (208)
309 1ojl_A Transcriptional regulat 70.7 1.6 5.4E-05 33.7 1.5 19 98-116 25-43 (304)
310 3pxg_A Negative regulator of g 70.5 1.6 5.5E-05 35.8 1.6 19 99-117 202-220 (468)
311 2dhr_A FTSH; AAA+ protein, hex 70.4 2.6 8.8E-05 35.4 2.8 23 94-116 60-82 (499)
312 2qt1_A Nicotinamide riboside k 70.1 2.3 8E-05 30.1 2.2 20 97-116 20-39 (207)
313 2qu8_A Putative nucleolar GTP- 70.0 1.8 6.2E-05 31.1 1.6 19 98-116 29-47 (228)
314 3b85_A Phosphate starvation-in 69.8 2.1 7.3E-05 31.4 2.0 20 96-115 20-39 (208)
315 3v64_C Agrin; beta propeller, 69.8 3.9 0.00013 31.7 3.6 18 40-58 317-334 (349)
316 3qf7_A RAD50; ABC-ATPase, ATPa 69.6 2.1 7.1E-05 34.0 2.0 20 100-120 25-44 (365)
317 4b4t_I 26S protease regulatory 69.3 2.3 8E-05 35.5 2.3 24 93-116 211-234 (437)
318 2ce7_A Cell division protein F 69.1 2.6 9E-05 35.1 2.6 23 94-116 45-67 (476)
319 2e26_A Reelin, reeler protein; 69.0 1.5 5.3E-05 38.9 1.2 44 16-66 521-567 (725)
320 1w5s_A Origin recognition comp 68.8 1.6 5.4E-05 33.8 1.1 21 98-118 50-72 (412)
321 2aka_B Dynamin-1; fusion prote 68.8 2.7 9.2E-05 31.2 2.4 25 97-122 25-49 (299)
322 1lw7_A Transcriptional regulat 68.5 1.7 5.9E-05 34.1 1.3 19 98-116 170-188 (365)
323 3pvs_A Replication-associated 68.4 1.9 6.4E-05 35.5 1.5 18 99-116 51-68 (447)
324 3uie_A Adenylyl-sulfate kinase 68.2 2.2 7.6E-05 30.2 1.7 20 97-116 24-43 (200)
325 1tf7_A KAIC; homohexamer, hexa 68.1 3 0.0001 34.5 2.8 25 94-118 35-59 (525)
326 2pjz_A Hypothetical protein ST 67.6 1.6 5.5E-05 33.4 0.9 22 93-115 26-47 (263)
327 2olr_A Phosphoenolpyruvate car 67.0 1.6 5.5E-05 37.5 0.9 21 97-117 240-260 (540)
328 2hf9_A Probable hydrogenase ni 67.0 2.9 0.0001 29.6 2.2 23 98-120 38-60 (226)
329 3nh6_A ATP-binding cassette SU 66.9 1.2 4E-05 35.1 -0.0 23 93-115 75-97 (306)
330 3hu3_A Transitional endoplasmi 66.6 2.9 9.9E-05 34.8 2.4 20 97-116 237-256 (489)
331 1sxj_A Activator 1 95 kDa subu 66.3 3 0.0001 34.5 2.3 19 98-116 77-95 (516)
332 1tf7_A KAIC; homohexamer, hexa 66.1 2.6 9E-05 34.9 2.0 28 92-119 275-302 (525)
333 3b9q_A Chloroplast SRP recepto 65.9 3.2 0.00011 32.3 2.3 22 95-116 97-118 (302)
334 2fz4_A DNA repair protein RAD2 65.7 3.7 0.00013 30.3 2.6 24 98-121 108-131 (237)
335 3t61_A Gluconokinase; PSI-biol 65.7 2.9 9.9E-05 29.5 1.9 19 98-116 18-36 (202)
336 1ytm_A Phosphoenolpyruvate car 65.5 1.8 6.1E-05 37.1 0.9 19 99-117 236-254 (532)
337 2onk_A Molybdate/tungstate ABC 65.4 1.9 6.5E-05 32.4 0.9 20 95-115 22-41 (240)
338 1klo_A Laminin; glycoprotein; 64.9 2.7 9.3E-05 29.8 1.7 31 31-64 110-146 (162)
339 1tue_A Replication protein E1; 64.9 2.5 8.6E-05 32.1 1.5 22 96-117 55-77 (212)
340 3cf2_A TER ATPase, transitiona 64.8 3.7 0.00013 36.7 2.8 26 91-116 231-256 (806)
341 2qag_A Septin-2, protein NEDD5 63.8 3.2 0.00011 32.9 2.0 20 101-121 40-59 (361)
342 3th5_A RAS-related C3 botulinu 67.3 1.5 5.1E-05 30.7 0.0 18 98-115 30-47 (204)
343 4e22_A Cytidylate kinase; P-lo 62.9 3.9 0.00013 30.4 2.3 20 96-115 25-44 (252)
344 3aez_A Pantothenate kinase; tr 62.9 3.5 0.00012 32.2 2.1 21 95-115 87-107 (312)
345 3nbx_X ATPase RAVA; AAA+ ATPas 62.8 2.8 9.5E-05 35.2 1.6 19 98-116 41-59 (500)
346 3cf2_A TER ATPase, transitiona 62.8 4.2 0.00014 36.3 2.8 25 92-116 505-529 (806)
347 1ypw_A Transitional endoplasmi 62.8 3.1 0.00011 36.7 1.9 24 93-116 506-529 (806)
348 1g5t_A COB(I)alamin adenosyltr 62.1 4.5 0.00015 30.1 2.5 24 98-121 28-51 (196)
349 3m6a_A ATP-dependent protease 62.1 3.4 0.00012 34.6 2.0 20 97-116 107-126 (543)
350 2npi_A Protein CLP1; CLP1-PCF1 62.0 3.9 0.00013 33.8 2.3 22 94-115 134-155 (460)
351 3b5x_A Lipid A export ATP-bind 61.5 2.8 9.6E-05 35.2 1.4 22 94-115 365-386 (582)
352 3pxi_A Negative regulator of g 61.2 3 0.0001 36.0 1.6 19 98-116 201-219 (758)
353 1svm_A Large T antigen; AAA+ f 61.0 4.3 0.00015 32.8 2.3 23 94-116 165-187 (377)
354 3u61_B DNA polymerase accessor 60.9 2.9 0.0001 31.6 1.3 18 100-117 50-67 (324)
355 3b60_A Lipid A export ATP-bind 60.8 2.6 8.9E-05 35.4 1.0 22 94-115 365-386 (582)
356 3te6_A Regulatory protein SIR3 60.8 2.6 8.8E-05 33.4 1.0 21 97-117 44-64 (318)
357 3a8t_A Adenylate isopentenyltr 60.6 3.9 0.00013 32.9 2.0 20 99-118 41-60 (339)
358 3f1s_B Vitamin K-dependent pro 60.5 3.9 0.00013 30.9 1.9 36 26-64 2-43 (283)
359 2og2_A Putative signal recogni 60.4 4.4 0.00015 32.5 2.3 22 95-116 154-175 (359)
360 1ii2_A Phosphoenolpyruvate car 60.2 2.9 0.0001 35.7 1.3 21 97-117 212-232 (524)
361 2yl4_A ATP-binding cassette SU 60.1 2.8 9.7E-05 35.3 1.1 22 94-115 366-387 (595)
362 1a5t_A Delta prime, HOLB; zinc 60.0 3.4 0.00012 32.0 1.5 20 98-117 24-43 (334)
363 2qnr_A Septin-2, protein NEDD5 59.9 3.3 0.00011 31.9 1.4 15 102-116 22-36 (301)
364 2eyu_A Twitching motility prot 59.9 3.8 0.00013 31.0 1.8 21 95-115 22-42 (261)
365 3k1j_A LON protease, ATP-depen 59.9 4.1 0.00014 34.4 2.1 20 97-116 59-78 (604)
366 1yqt_A RNAse L inhibitor; ATP- 59.8 4.8 0.00016 33.8 2.5 22 94-115 43-64 (538)
367 3c5h_A Glucocorticoid receptor 59.7 3.6 0.00012 30.5 1.6 21 98-118 19-48 (255)
368 2xtp_A GTPase IMAP family memb 59.6 3.7 0.00013 30.1 1.6 24 98-122 22-45 (260)
369 1j3b_A ATP-dependent phosphoen 59.0 3.1 0.0001 35.6 1.2 21 97-117 224-244 (529)
370 3cmw_A Protein RECA, recombina 58.9 4.8 0.00016 38.9 2.6 29 93-121 378-406 (1706)
371 3cmw_A Protein RECA, recombina 58.4 4.9 0.00017 38.8 2.6 29 93-121 727-755 (1706)
372 1rz3_A Hypothetical protein rb 58.4 4.5 0.00015 28.7 1.9 21 96-116 20-40 (201)
373 1u0j_A DNA replication protein 58.3 4.9 0.00017 31.2 2.2 21 100-121 106-126 (267)
374 3qf4_B Uncharacterized ABC tra 58.0 3.6 0.00012 34.8 1.4 21 95-115 378-398 (598)
375 3ux8_A Excinuclease ABC, A sub 57.7 2.6 8.7E-05 36.0 0.5 21 95-115 41-61 (670)
376 2j9r_A Thymidine kinase; TK1, 57.7 6.2 0.00021 29.7 2.6 26 96-121 26-51 (214)
377 1r6b_X CLPA protein; AAA+, N-t 57.6 3.8 0.00013 35.2 1.5 20 98-117 207-226 (758)
378 1g41_A Heat shock protein HSLU 57.4 5.1 0.00018 33.2 2.2 20 97-116 49-68 (444)
379 3fby_A COMP, cartilage oligome 57.2 9.7 0.00033 32.8 3.9 41 24-65 16-61 (551)
380 3bk7_A ABC transporter ATP-bin 57.0 5.3 0.00018 34.2 2.3 22 94-115 113-134 (607)
381 4dhe_A Probable GTP-binding pr 56.9 2.2 7.5E-05 30.1 -0.1 24 98-122 29-52 (223)
382 3ney_A 55 kDa erythrocyte memb 56.8 5.7 0.00019 29.2 2.2 21 97-117 18-38 (197)
383 3cnl_A YLQF, putative uncharac 56.7 6.1 0.00021 29.9 2.4 23 99-122 100-122 (262)
384 3def_A T7I23.11 protein; chlor 56.5 4.4 0.00015 30.1 1.6 24 98-122 36-59 (262)
385 3sov_A LRP-6, low-density lipo 56.4 11 0.00037 28.9 3.8 24 40-64 280-309 (318)
386 3f9v_A Minichromosome maintena 56.4 4 0.00014 34.7 1.5 17 100-116 329-345 (595)
387 4a82_A Cystic fibrosis transme 56.3 3.5 0.00012 34.7 1.1 21 95-115 364-384 (578)
388 2px0_A Flagellar biosynthesis 56.3 5.4 0.00019 30.8 2.1 22 97-118 104-125 (296)
389 3bk7_A ABC transporter ATP-bin 56.2 3.7 0.00013 35.2 1.2 21 95-115 379-399 (607)
390 3tlx_A Adenylate kinase 2; str 56.1 5.4 0.00018 29.4 2.0 21 96-116 27-47 (243)
391 3nwj_A ATSK2; P loop, shikimat 55.8 5.3 0.00018 30.2 1.9 19 98-116 48-66 (250)
392 4b3f_X DNA-binding protein smu 55.8 5.6 0.00019 33.7 2.3 21 101-121 208-228 (646)
393 2x2e_A Dynamin-1; nitration, h 55.7 4.5 0.00015 31.6 1.6 25 97-122 30-54 (353)
394 1rj9_A FTSY, signal recognitio 55.3 5.4 0.00018 31.0 2.0 20 97-116 101-120 (304)
395 1sq5_A Pantothenate kinase; P- 55.2 5 0.00017 30.8 1.7 19 97-115 79-97 (308)
396 3tui_C Methionine import ATP-b 55.1 3.8 0.00013 33.2 1.1 22 94-115 50-71 (366)
397 3qq5_A Small GTP-binding prote 55.0 2.8 9.6E-05 34.3 0.3 23 99-122 35-57 (423)
398 1puj_A YLQF, conserved hypothe 54.9 6.6 0.00023 30.0 2.4 25 98-123 120-144 (282)
399 2wkq_A NPH1-1, RAS-related C3 54.9 4.9 0.00017 30.0 1.6 21 98-118 155-175 (332)
400 1yqt_A RNAse L inhibitor; ATP- 54.8 4 0.00014 34.2 1.2 21 95-115 309-329 (538)
401 3o47_A ADP-ribosylation factor 54.6 4.9 0.00017 31.2 1.6 16 100-115 167-182 (329)
402 3qf4_A ABC transporter, ATP-bi 54.6 3.9 0.00013 34.5 1.1 21 95-115 366-386 (587)
403 2cdn_A Adenylate kinase; phosp 54.4 5.9 0.0002 27.8 1.9 19 98-116 20-38 (201)
404 3cmu_A Protein RECA, recombina 54.3 6.3 0.00021 38.8 2.6 29 93-121 378-406 (2050)
405 3u7u_G Neuregulin 1; signaling 54.2 3.2 0.00011 24.8 0.3 40 59-98 1-45 (55)
406 2vp4_A Deoxynucleoside kinase; 54.1 6.6 0.00022 28.5 2.2 20 96-115 18-37 (230)
407 2p5t_B PEZT; postsegregational 54.1 4.8 0.00016 29.8 1.4 21 97-117 31-51 (253)
408 4aby_A DNA repair protein RECN 53.8 2.4 8E-05 33.4 -0.4 21 94-115 57-77 (415)
409 1m7g_A Adenylylsulfate kinase; 53.5 6.3 0.00021 28.0 1.9 20 97-116 24-43 (211)
410 1qvr_A CLPB protein; coiled co 53.2 4.8 0.00016 35.4 1.5 19 99-117 192-210 (854)
411 1z47_A CYSA, putative ABC-tran 53.0 3.7 0.00013 32.9 0.7 21 95-115 38-58 (355)
412 2yyz_A Sugar ABC transporter, 53.0 4.3 0.00015 32.6 1.1 21 95-115 26-46 (359)
413 2yhs_A FTSY, cell division pro 53.0 6.8 0.00023 33.2 2.3 22 95-116 290-311 (503)
414 1z6t_A APAF-1, apoptotic prote 52.5 6.6 0.00023 32.2 2.1 22 98-119 147-168 (591)
415 2qag_B Septin-6, protein NEDD5 52.4 5.7 0.0002 32.8 1.7 27 94-121 36-64 (427)
416 2it1_A 362AA long hypothetical 52.2 4.5 0.00015 32.5 1.1 21 95-115 26-46 (362)
417 2gza_A Type IV secretion syste 52.2 6.7 0.00023 31.0 2.1 21 95-115 172-192 (361)
418 3cmu_A Protein RECA, recombina 52.1 7.1 0.00024 38.4 2.6 28 94-121 728-755 (2050)
419 1ak2_A Adenylate kinase isoenz 52.1 6.6 0.00023 28.4 1.9 20 97-116 15-34 (233)
420 1gvn_B Zeta; postsegregational 52.0 5.9 0.0002 30.2 1.7 20 98-117 33-52 (287)
421 3e70_C DPA, signal recognition 51.9 5.8 0.0002 31.3 1.6 20 97-116 128-147 (328)
422 1v43_A Sugar-binding transport 51.4 4.7 0.00016 32.5 1.1 21 95-115 34-54 (372)
423 3upu_A ATP-dependent DNA helic 51.3 7.1 0.00024 31.6 2.1 20 100-119 47-66 (459)
424 3fvq_A Fe(3+) IONS import ATP- 50.4 5 0.00017 32.3 1.0 21 95-115 27-47 (359)
425 1odf_A YGR205W, hypothetical 3 50.4 6.5 0.00022 30.3 1.7 19 97-115 30-48 (290)
426 2wsm_A Hydrogenase expression/ 49.9 8.6 0.0003 27.0 2.2 21 99-119 31-51 (221)
427 3t34_A Dynamin-related protein 49.9 6.6 0.00023 30.6 1.7 21 100-121 36-56 (360)
428 3pxi_A Negative regulator of g 49.7 6 0.00021 34.1 1.5 17 100-116 523-539 (758)
429 2a5y_B CED-4; apoptosis; HET: 49.6 7.3 0.00025 32.2 2.0 22 98-119 152-173 (549)
430 3ozx_A RNAse L inhibitor; ATP 49.5 5.5 0.00019 33.5 1.2 23 93-115 289-311 (538)
431 3gd7_A Fusion complex of cysti 49.5 5.2 0.00018 32.4 1.0 21 95-115 44-64 (390)
432 1q3t_A Cytidylate kinase; nucl 49.5 8.7 0.0003 27.8 2.2 20 97-116 15-34 (236)
433 3d31_A Sulfate/molybdate ABC t 49.4 3.5 0.00012 32.9 -0.0 22 94-115 22-43 (348)
434 1e69_A Chromosome segregation 49.3 8.1 0.00028 29.7 2.1 23 96-120 23-45 (322)
435 2ga8_A Hypothetical 39.9 kDa p 49.3 8.8 0.0003 31.1 2.3 20 97-116 21-42 (359)
436 2iw3_A Elongation factor 3A; a 49.1 4.6 0.00016 36.9 0.7 23 93-115 456-478 (986)
437 1g29_1 MALK, maltose transport 49.1 4.7 0.00016 32.4 0.7 21 95-115 26-46 (372)
438 1lr7_A Follistatin, FS1; hepar 48.7 17 0.00057 22.3 3.1 27 27-54 2-29 (74)
439 1zu4_A FTSY; GTPase, signal re 47.9 10 0.00034 29.7 2.4 23 96-118 103-125 (320)
440 2qag_C Septin-7; cell cycle, c 47.7 6.9 0.00024 32.0 1.5 18 102-120 35-52 (418)
441 3b6e_A Interferon-induced heli 47.6 6.2 0.00021 27.3 1.1 25 97-121 47-71 (216)
442 1r6b_X CLPA protein; AAA+, N-t 47.4 6.9 0.00024 33.5 1.5 17 100-116 490-506 (758)
443 3zyj_B Netrin-G1; cell adhesio 47.3 7.5 0.00025 32.3 1.6 28 37-65 302-329 (426)
444 3rlf_A Maltose/maltodextrin im 47.1 6.1 0.00021 32.1 1.1 21 95-115 26-46 (381)
445 3pih_A Uvrabc system protein A 46.9 6.5 0.00022 35.6 1.3 24 98-121 24-47 (916)
446 3j16_B RLI1P; ribosome recycli 46.9 10 0.00035 32.5 2.5 21 95-115 100-120 (608)
447 2ewv_A Twitching motility prot 46.7 8.7 0.0003 30.5 1.9 21 95-115 133-153 (372)
448 4f4c_A Multidrug resistance pr 46.3 5.9 0.0002 36.8 1.0 21 95-115 1102-1122(1321)
449 3ux8_A Excinuclease ABC, A sub 45.9 5.6 0.00019 33.9 0.7 20 96-115 346-365 (670)
450 3fwy_A Light-independent proto 45.8 9.9 0.00034 29.6 2.1 23 97-119 47-69 (314)
451 3ozx_A RNAse L inhibitor; ATP 45.7 13 0.00043 31.3 2.9 20 96-115 23-42 (538)
452 2yv5_A YJEQ protein; hydrolase 45.1 9.3 0.00032 29.3 1.8 19 97-115 164-182 (302)
453 2pt7_A CAG-ALFA; ATPase, prote 45.1 9.5 0.00033 29.8 1.9 20 96-115 169-188 (330)
454 1uj2_A Uridine-cytidine kinase 45.1 8.8 0.0003 28.2 1.6 18 99-116 23-40 (252)
455 1oxx_K GLCV, glucose, ABC tran 45.0 3.6 0.00012 32.9 -0.6 21 95-115 28-48 (353)
456 2gxq_A Heat resistant RNA depe 44.7 15 0.00051 25.3 2.7 24 98-121 38-61 (207)
457 1jwy_B Dynamin A GTPase domain 44.7 8.5 0.00029 28.8 1.5 25 97-122 23-47 (315)
458 4eaq_A DTMP kinase, thymidylat 44.4 11 0.00037 27.7 2.1 22 95-116 23-44 (229)
459 2qpt_A EH domain-containing pr 44.0 12 0.0004 31.5 2.4 26 97-123 64-89 (550)
460 1w1w_A Structural maintenance 43.7 12 0.0004 29.9 2.3 24 95-119 23-46 (430)
461 3tqc_A Pantothenate kinase; bi 43.7 8.9 0.0003 30.2 1.5 16 100-115 94-109 (321)
462 2rcn_A Probable GTPase ENGC; Y 43.6 11 0.00037 30.3 2.0 23 97-120 214-236 (358)
463 3lfu_A DNA helicase II; SF1 he 43.4 12 0.0004 31.1 2.3 23 98-120 22-44 (647)
464 2iw3_A Elongation factor 3A; a 43.1 4 0.00014 37.3 -0.7 23 93-115 694-716 (986)
465 2ygr_A Uvrabc system protein A 42.4 8.2 0.00028 35.4 1.2 24 98-121 46-69 (993)
466 1vma_A Cell division protein F 42.1 14 0.00046 28.8 2.4 23 96-118 102-124 (306)
467 1ls1_A Signal recognition part 41.8 11 0.00037 28.9 1.7 22 97-118 97-118 (295)
468 1qvr_A CLPB protein; coiled co 41.8 10 0.00035 33.3 1.7 18 99-116 589-606 (854)
469 3end_A Light-independent proto 41.7 13 0.00045 27.8 2.2 23 97-119 40-62 (307)
470 2r6f_A Excinuclease ABC subuni 41.2 8.7 0.0003 35.1 1.2 24 98-121 44-67 (972)
471 1mky_A Probable GTP-binding pr 41.2 11 0.00036 30.4 1.6 22 99-121 181-202 (439)
472 2v3c_C SRP54, signal recogniti 41.0 14 0.00048 30.2 2.4 22 98-119 99-120 (432)
473 2gno_A DNA polymerase III, gam 40.9 9.3 0.00032 29.6 1.2 18 100-117 20-37 (305)
474 2ohf_A Protein OLA1, GTP-bindi 40.7 18 0.00061 29.5 2.9 25 96-121 20-44 (396)
475 1t9h_A YLOQ, probable GTPase E 40.4 4.8 0.00016 31.6 -0.5 21 95-115 170-190 (307)
476 3llm_A ATP-dependent RNA helic 40.2 18 0.00063 26.0 2.7 23 98-120 76-98 (235)
477 2ddu_A Reelin; beta-jelly-roll 39.8 11 0.00037 31.1 1.5 41 19-66 181-226 (387)
478 1e9r_A Conjugal transfer prote 39.8 14 0.00047 29.3 2.1 23 98-121 53-75 (437)
479 2qm8_A GTPase/ATPase; G protei 39.8 12 0.00041 29.3 1.7 21 95-115 52-72 (337)
480 3ojy_B Complement component C8 39.5 18 0.00061 30.5 2.8 33 32-65 451-483 (537)
481 3j16_B RLI1P; ribosome recycli 39.2 14 0.00048 31.6 2.2 19 97-115 377-395 (608)
482 3dpu_A RAB family protein; roc 38.6 12 0.00041 30.8 1.6 19 98-116 41-59 (535)
483 3ojy_A Complement component C8 37.7 15 0.0005 31.3 2.0 38 26-65 464-501 (554)
484 1u0l_A Probable GTPase ENGC; p 37.6 15 0.0005 28.1 1.9 18 98-115 169-186 (301)
485 2orv_A Thymidine kinase; TP4A 37.3 18 0.00063 27.6 2.4 26 97-122 18-43 (234)
486 1vec_A ATP-dependent RNA helic 37.2 24 0.00083 24.2 2.9 24 98-121 40-63 (206)
487 2gk6_A Regulator of nonsense t 37.2 15 0.00053 31.0 2.1 21 100-120 197-217 (624)
488 2o5v_A DNA replication and rep 36.9 13 0.00043 29.7 1.5 21 97-119 26-46 (359)
489 3g5u_A MCG1178, multidrug resi 36.7 11 0.00037 35.0 1.1 22 94-115 412-433 (1284)
490 1rif_A DAR protein, DNA helica 36.7 19 0.00063 26.7 2.3 23 99-121 129-151 (282)
491 3g5u_A MCG1178, multidrug resi 36.6 13 0.00043 34.5 1.5 22 94-115 1055-1076(1284)
492 3jvv_A Twitching mobility prot 35.6 15 0.00053 29.1 1.7 20 96-115 121-140 (356)
493 3fht_A ATP-dependent RNA helic 35.4 23 0.00079 26.9 2.7 24 98-121 64-87 (412)
494 1p5z_B DCK, deoxycytidine kina 35.1 16 0.00056 26.8 1.7 19 97-115 23-41 (263)
495 2f6r_A COA synthase, bifunctio 35.1 15 0.0005 27.8 1.5 18 99-116 76-93 (281)
496 3e1s_A Exodeoxyribonuclease V, 35.1 18 0.0006 30.6 2.1 20 99-118 205-224 (574)
497 2vf7_A UVRA2, excinuclease ABC 35.0 13 0.00043 33.4 1.3 24 98-121 36-59 (842)
498 3pey_A ATP-dependent RNA helic 34.9 25 0.00084 26.4 2.7 24 98-121 44-67 (395)
499 2fwr_A DNA repair protein RAD2 34.9 22 0.00076 28.1 2.6 24 98-121 108-131 (472)
500 1j8m_F SRP54, signal recogniti 34.7 17 0.00058 28.0 1.8 21 98-118 98-118 (297)
No 1
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=73.65 Aligned_cols=40 Identities=33% Similarity=0.660 Sum_probs=34.1
Q ss_pred ccCCCCCCCCCCCCCeee-----eCCCCceEEecCCCeeccccccCc
Q psy10055 25 VLDPCEEHDPCKHGGICI-----STDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~-----~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
++++| .++||+|||+|. +..++|+|.|++ ||+|++||..+
T Consensus 7 ~~~eC-~s~pC~NgGtC~~~~~~d~~~~y~C~C~~-g~~G~~CE~~v 51 (55)
T 3u7u_G 7 KCAEK-EKTFCVNGGECFMVKDLSNPSRYLCKCPN-EFTGDRCQNYV 51 (55)
T ss_dssp ECCST-TTTTSCTTCEEEEECCC--CCCEEEEECT-TEESTTSCEEC
T ss_pred cCCCC-cCCCCCCCCCcCCCCccCCCCCEeEeCCC-CCcCCCcCccC
Confidence 56899 699999999994 566899999999 99999999764
No 2
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=99.04 E-value=1.5e-10 Score=65.99 Aligned_cols=38 Identities=39% Similarity=0.763 Sum_probs=34.9
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeecccccc
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
++++| .++||+|+|+|++..++|.|.|++ ||+|.+|+.
T Consensus 2 d~d~C-~~~pC~ngg~C~~~~~~~~C~C~~-G~~G~~Ce~ 39 (39)
T 1edm_B 2 DGDQC-ESNPCLNGGSCKDDINSYECWCPF-GFEGKNCEL 39 (39)
T ss_dssp CCCTT-TTCCCCTTCEEEEETTEEEEECCT-TCCSTTSCC
T ss_pred ccccC-CCCCCCCCCEeEcCCCceEeECCC-CCcCCccCC
Confidence 46889 699999999999999999999999 999999973
No 3
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=98.92 E-value=9e-10 Score=67.13 Aligned_cols=42 Identities=21% Similarity=0.657 Sum_probs=36.4
Q ss_pred ccCCCCCCC---CCCCCCeee--eCCCCceEEecCCCeeccccccCccc
Q psy10055 25 VLDPCEEHD---PCKHGGICI--STDSGPICECRNLDFEGIYCEKVEIS 68 (124)
Q Consensus 25 ~~d~C~~~n---PC~ngG~C~--~~~~~y~C~C~~tg~~G~~Ce~~~~~ 68 (124)
++++| .++ ||+|||+|+ +..++|.|.|++ ||+|.+|+....+
T Consensus 2 ~i~~C-~~~~~~pC~ngg~C~~~~~~~~~~C~C~~-G~~G~~Ce~~~~~ 48 (53)
T 1egf_A 2 SYPGC-PSSYDGYCLNGGVCMHIESLDSYTCNCVI-GYSGDRCQTRDLR 48 (53)
T ss_dssp EECCC-CTTSSCSSCSSCEEEEESSSSCEEEECCT-TCCSSSSCCCSCC
T ss_pred CcccC-CCCCCCcCCCCcEEEeeCCCCCEEEECCC-CCcCCcCCccCcc
Confidence 46889 576 999999999 778899999999 9999999987544
No 4
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=98.89 E-value=1.3e-09 Score=64.32 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=32.7
Q ss_pred CCCCCC---CCCCCCeee--eCCCCceEEecCCCeeccccccCcc
Q psy10055 28 PCEEHD---PCKHGGICI--STDSGPICECRNLDFEGIYCEKVEI 67 (124)
Q Consensus 28 ~C~~~n---PC~ngG~C~--~~~~~y~C~C~~tg~~G~~Ce~~~~ 67 (124)
+| .++ ||+|||+|+ +..++|.|.|++ ||+|.+|+.+++
T Consensus 2 ~C-~~~~~~pC~ngg~C~~~~~~~~~~C~C~~-G~~G~~Ce~~~~ 44 (45)
T 1a3p_A 2 GX-PSSYDGYCLNGGVXMHIESLDSYTCNCVI-GYSGDRCQTRDL 44 (45)
T ss_dssp CC-TTCCSSCCSSSCEEEECTTTSSEEEECCT-TEETTTTCEECC
T ss_pred Cc-ccCCCCCCCCCCEEEeecCCCCEEEEcCC-CCcCCcCCcccC
Confidence 57 467 999999998 567899999999 999999987654
No 5
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=98.82 E-value=9.1e-10 Score=69.07 Aligned_cols=44 Identities=27% Similarity=0.523 Sum_probs=37.5
Q ss_pred ccCCCCCCCCCCCCCeeee-----CCCCceEEecCCCeeccccccCcccee
Q psy10055 25 VLDPCEEHDPCKHGGICIS-----TDSGPICECRNLDFEGIYCEKVEISVV 70 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~-----~~~~y~C~C~~tg~~G~~Ce~~~~~~~ 70 (124)
.-++| .++||+|||+|++ ..++|.|.|++ ||+|.+|+.+++++.
T Consensus 5 ~c~~C-~~~pC~ngG~C~~~~~~~~~~~y~C~C~~-Gf~G~~Ce~~i~~~~ 53 (63)
T 1hae_A 5 KCAEK-EKTFCVNGGECFMVKDLSNPSRYLCKCQP-GFTGARCTENVPMKV 53 (63)
T ss_dssp ECCHH-HHTTSCTTCEEEEEESSSSSCCEEEECCT-TEESTTSCEECCSSC
T ss_pred ccCCC-CCCcCCCCcEEecCCccCCCCCEEEECCC-CCcCCccCcCcCccc
Confidence 34678 6999999999996 56789999999 999999998776654
No 6
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=98.73 E-value=9.6e-09 Score=72.32 Aligned_cols=79 Identities=19% Similarity=0.457 Sum_probs=48.5
Q ss_pred cccccccc----ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccceeeccceeeccccccceeeEeccC
Q psy10055 17 CHYSVENS----VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSRKKLRLIECEDG 92 (124)
Q Consensus 17 c~~~v~~~----~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~r~~~~~~~~~~C~~~ 92 (124)
|..++... ++++| ..+||.++++|++..++|.|.|++ ||+|..|+.+.+++...++.....++.....+.|...
T Consensus 32 C~~Gy~G~~C~~~~~~C-~~~~C~~~~~C~~~~g~~~C~C~~-G~~G~~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~ 109 (135)
T 2vj3_A 32 CLQGYTGPRCEIDVNEC-VSNPCQNDATCLDQIGEFQCICMP-GYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECP 109 (135)
T ss_dssp CCTTEESTTSCEECCTT-TTCCCCSSCEEEECSSCEEEECCT-TEESSSSCEECCTTTTCCSTTTCEEEECSSCEEEECC
T ss_pred CCCCCcCCcccccCccC-CCCCCCCCCEEeCCCCCceeeCCC-CCcCCcceecCCcccCCCcCCCCEeECCCCCeEEECC
Confidence 44555442 45667 467777777777777777777777 7777777766666554455443444555555666666
Q ss_pred CCcCC
Q psy10055 93 AGMDP 97 (124)
Q Consensus 93 ~~mvp 97 (124)
.+|.+
T Consensus 110 ~G~~G 114 (135)
T 2vj3_A 110 TGFTG 114 (135)
T ss_dssp TTEES
T ss_pred CCCcC
Confidence 55544
No 7
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=98.73 E-value=2.9e-09 Score=67.30 Aligned_cols=39 Identities=28% Similarity=0.705 Sum_probs=35.7
Q ss_pred ccCCCCCCCCCCCC--CeeeeCCCCceEEecCCCee-ccccccC
Q psy10055 25 VLDPCEEHDPCKHG--GICISTDSGPICECRNLDFE-GIYCEKV 65 (124)
Q Consensus 25 ~~d~C~~~nPC~ng--G~C~~~~~~y~C~C~~tg~~-G~~Ce~~ 65 (124)
++|+| .++||+|| |+|++..++|.|.|++ ||+ |.+|+..
T Consensus 10 ~~d~C-~snPC~nga~gtC~~~~g~y~C~C~~-Gy~~G~~C~~~ 51 (61)
T 2k2s_B 10 TPAAC-SSNPCGPEAAGTCKETNSGYICRCNQ-GYRISLDGTGN 51 (61)
T ss_dssp SCCHH-HHCSSCSSSCCEEEECSSEEEEECCT-TEEEEECSSSC
T ss_pred CCCcC-cCCCCcCCCccccccCCCceEeECCC-CCccCCCCCCC
Confidence 56889 69999999 9999999999999999 999 9999754
No 8
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=71.78 Aligned_cols=75 Identities=23% Similarity=0.428 Sum_probs=58.9
Q ss_pred ccCCCCCCCCCCCCCeee-------eCCCCceEEecCCCeeccccccCccceeeccceeeccccccceeeEeccCCCcCC
Q psy10055 25 VLDPCEEHDPCKHGGICI-------STDSGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSRKKLRLIECEDGAGMDP 97 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~-------~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~r~~~~~~~~~~C~~~~~mvp 97 (124)
++++| .++||.++++|+ +..++|.|.|++ ||+|..|+.+++++...++.....++.....+.|....+|.+
T Consensus 51 ~~~~C-~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~-G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G 128 (143)
T 4d90_A 51 SAGPC-TPNPCHNGGTCEISEAYRGDTFIGYVCKCPR-GFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMG 128 (143)
T ss_dssp CCCTT-SSCCCCTTCEEEECCCEETTEECCEEEECCT-TEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBS
T ss_pred cCCcC-CCCCCCCCCEecCCCccccCCCCCeEeECcC-CCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCcc
Confidence 45789 699999999999 556789999999 999999998887776566655555666677788888877766
Q ss_pred CCce
Q psy10055 98 PSRE 101 (124)
Q Consensus 98 ~~r~ 101 (124)
...+
T Consensus 129 ~~c~ 132 (143)
T 4d90_A 129 RNCQ 132 (143)
T ss_dssp TTSC
T ss_pred CCce
Confidence 4333
No 9
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=98.68 E-value=1.5e-08 Score=73.00 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=49.6
Q ss_pred cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccceeeccceeeccc-cccceeeEeccCCCcC
Q psy10055 24 SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVVRAISMRVRGS-RKKLRLIECEDGAGMD 96 (124)
Q Consensus 24 ~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~r~~-~~~~~~~~C~~~~~mv 96 (124)
.++|+| .++||+|+|+|++..++|.|.|++ ||+|..|+.. +++...+..-...+ ++....+.|....+|.
T Consensus 46 ~dideC-~~~pC~n~g~C~~~~~~y~C~C~~-G~~G~~C~~~-deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~ 116 (146)
T 1x7a_L 46 VDGDQC-EPNPCLNGGLCKDDINSYECWCQV-GFEGKNCELD-ATCNIKNGRCKQFCKTGADSKVLCSCTTGYR 116 (146)
T ss_dssp ----CC-SSCSSCTTCEEEECSSCEEEECCS-SEESTTTCEE-CCTTSGGGSCSSBCCCCSSSCCCCBCCTTEE
T ss_pred CCcCcC-CCCCCCCCCEeECCCCCEEEecCC-CCcCCcCCCC-ccccCCCCCCcCCCCCCCCCCEEeEcCCCcE
Confidence 367899 699999999999999999999999 9999999865 45543222211245 5666667777776664
No 10
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=98.68 E-value=1.1e-08 Score=68.24 Aligned_cols=42 Identities=29% Similarity=0.671 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCCCCCeeeeCC--CCceEEecCCCeeccccccCccc
Q psy10055 25 VLDPCEEHDPCKHGGICISTD--SGPICECRNLDFEGIYCEKVEIS 68 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~--~~y~C~C~~tg~~G~~Ce~~~~~ 68 (124)
++++| .++||+|||+|++.. ++|.|.|++ ||+|++|+.++++
T Consensus 47 ~~~~C-~~~pC~ngg~C~~~~~~~~~~C~C~~-G~~G~~Ce~~ide 90 (91)
T 1tpg_A 47 PVKSC-SEPRCFNGGTCQQALYFSDFVCQCPE-GFAGKSCEIDTRA 90 (91)
T ss_dssp CEEEC-SSCCSCTTCEEEEESSSSCEEEECCT-TCBSSSCCBCSSC
T ss_pred cCCcc-cCCCCCCCCEeecCCCCCCeEeECCC-CCcCCcCCcCCCC
Confidence 46889 699999999999887 899999999 9999999987654
No 11
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=98.66 E-value=9.5e-09 Score=61.24 Aligned_cols=38 Identities=32% Similarity=0.782 Sum_probs=32.1
Q ss_pred ccCCCCCC---CCCCCCCeeeeCC--CCceEEecCCCeeccccccC
Q psy10055 25 VLDPCEEH---DPCKHGGICISTD--SGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 25 ~~d~C~~~---nPC~ngG~C~~~~--~~y~C~C~~tg~~G~~Ce~~ 65 (124)
++++| .+ +||+| |+|++.. ++|.|.|++ ||+|.+||..
T Consensus 2 ~i~~C-~~~~~~pC~n-G~C~~~~~~~~~~C~C~~-GytG~~Ce~~ 44 (46)
T 1k36_A 2 SITKC-SSDMNGYCLH-GQCIYLVDMSQNYCRCEV-GYTGVRCEHF 44 (46)
T ss_dssp CEECC-CTTCCSSCSS-EEEEEETTTTEEEEEECT-TCSSTTSCCC
T ss_pred ccccC-CCCCCCCCCC-CEeeccCCCCCEEEECCC-CCccCCCCcc
Confidence 35778 57 99999 7999754 689999999 9999999875
No 12
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=98.66 E-value=1.3e-08 Score=72.63 Aligned_cols=70 Identities=24% Similarity=0.445 Sum_probs=50.2
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccceeeccceee---ccccccce-eeEeccCCCcC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVVRAISMRV---RGSRKKLR-LIECEDGAGMD 96 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~---r~~~~~~~-~~~C~~~~~mv 96 (124)
++|+| .++||+|+|+|++..++|.|.|++ ||+|..|+.+++++...+.... ..++.... .+.|....+|.
T Consensus 46 did~C-~~~pC~n~g~C~~~~g~y~C~C~~-G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~ 119 (142)
T 2c4f_L 46 DGDQC-ASSPCQNGGSCKDQLQSYICFCLP-AFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119 (142)
T ss_dssp TCCGG-GGCCCCTTCEEEEETTEEEEECCT-TEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEE
T ss_pred ccCcC-cCCCcCCCCEEeCCCCCEEeeCCC-CccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCce
Confidence 67899 699999999999999999999999 9999999875444311111111 13455555 67777765553
No 13
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=98.64 E-value=1.3e-08 Score=79.79 Aligned_cols=68 Identities=24% Similarity=0.418 Sum_probs=52.5
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccceee---ccceeeccccccceeeEeccCCCcC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVVR---AISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~---~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
++|+| .++||+|+|+|++..++|.|.|++ ||.|.+|+.+.+++.. .++.. .+.+....+.|....+|.
T Consensus 4 d~~~C-~~~pC~~~g~C~~~~~~~~C~C~~-g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~ 74 (317)
T 3h5c_B 4 GGSPC-ISQPCLHNGSCQDSIWGYTCTCSP-GYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYR 74 (317)
T ss_dssp --CCT-TSCCCTTTCCCCCCSSSCCCCCSS-SCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEE
T ss_pred cCCcC-CCCCCCCCCEeECCCCCeEEECCC-CCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEecccccc
Confidence 56899 699999999999999999999999 9999999988888764 34443 456666666666655553
No 14
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=98.63 E-value=3e-08 Score=69.73 Aligned_cols=72 Identities=24% Similarity=0.453 Sum_probs=57.2
Q ss_pred ccCCCCC--CCCCCCCCeeeeCCCCceEEecCCCeeccccccCccceeeccceeeccccccceeeEeccCCCcCCC
Q psy10055 25 VLDPCEE--HDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSRKKLRLIECEDGAGMDPP 98 (124)
Q Consensus 25 ~~d~C~~--~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~r~~~~~~~~~~C~~~~~mvp~ 98 (124)
++|+| . ++||.++|+|++..++|.|.|++ ||+|..|+.+++++...++.....++.....+.|....+|.+.
T Consensus 4 dideC-~~~~~~C~~~g~C~~~~g~~~C~C~~-Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~ 77 (135)
T 2vj3_A 4 DVDEC-SLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGV 77 (135)
T ss_dssp CCCTT-TSSSCSSSTTCEEEECSSSEEEECCT-TEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESS
T ss_pred ccccc-cCCCCCCCCCCEeECCCCCEEEECCC-CCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCC
Confidence 67899 5 78999999999999999999999 9999999988777765566555556666666777777777653
No 15
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=98.62 E-value=1.4e-08 Score=62.19 Aligned_cols=35 Identities=23% Similarity=0.646 Sum_probs=30.9
Q ss_pred CCCCCCCCeee--eCCCCceEEecCCCeeccccccCcc
Q psy10055 32 HDPCKHGGICI--STDSGPICECRNLDFEGIYCEKVEI 67 (124)
Q Consensus 32 ~nPC~ngG~C~--~~~~~y~C~C~~tg~~G~~Ce~~~~ 67 (124)
++||+|||+|+ +..++|.|.|++ ||+|.+||....
T Consensus 11 ~~pC~nGG~C~~~~~~~~~~C~C~~-GytG~~Ce~~~~ 47 (53)
T 1nql_B 11 DGYCLHDGVCMYIEALDKYACNCVV-GYIGERCQYRDL 47 (53)
T ss_dssp CCEECTTCEEEEETTTTEEEEEECT-TEESTTSCEECS
T ss_pred CCCCCCCeEEeeecCCCCEEEecCC-CCcCCCCCcCCc
Confidence 68999999998 667789999999 999999987643
No 16
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=98.60 E-value=7.9e-09 Score=78.41 Aligned_cols=70 Identities=23% Similarity=0.385 Sum_probs=15.2
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc-cceeeccceeeccccccceeeEeccCCCcC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE-ISVVRAISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~-~~~~~~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
++|+| .++||+|+|+|++..++|.|.|++ ||+|.+|+.++ +.+...+..-...++.....+.|....+|.
T Consensus 41 dideC-~~~pC~ngg~C~n~~g~y~C~C~~-Gf~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~ 111 (195)
T 1nfu_B 41 DGDQC-ETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111 (195)
T ss_dssp ------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEE
T ss_pred CCccc-CCCCCCCCCEeECCCCCeeEeCCC-CceeccccccccccccCCCCCCCCEeECCCCCeEEECCCCce
Confidence 67899 699999999999999999999999 99999999866 555432221111455556667777766665
No 17
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=98.59 E-value=3.7e-08 Score=67.73 Aligned_cols=70 Identities=21% Similarity=0.403 Sum_probs=49.2
Q ss_pred ccCCCCCCCC--------CCCCCeeeeCCCCceEEecCCCeeccccccCcc--ceeeccceeeccccccceeeEeccCCC
Q psy10055 25 VLDPCEEHDP--------CKHGGICISTDSGPICECRNLDFEGIYCEKVEI--SVVRAISMRVRGSRKKLRLIECEDGAG 94 (124)
Q Consensus 25 ~~d~C~~~nP--------C~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~--~~~~~~~~~~r~~~~~~~~~~C~~~~~ 94 (124)
++|+| ..+| |.++|+|++..++|.|.|++ ||+|..|+.... ++......-...+++....+.|....+
T Consensus 5 d~d~C-~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~-G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G 82 (114)
T 1aut_L 5 DGDQC-LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRS-GWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 82 (114)
T ss_dssp ---CC-CCCSSCCSSSSTTTTSEEECCCSSCCCEEECT-TEESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTT
T ss_pred ecccc-cCCCccccccccCCCcCCCCCCCCCcEeeCCC-CCcCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCC
Confidence 56889 6899 99999999999999999999 999999987543 343222211114556666677877766
Q ss_pred cC
Q psy10055 95 MD 96 (124)
Q Consensus 95 mv 96 (124)
|.
T Consensus 83 ~~ 84 (114)
T 1aut_L 83 YK 84 (114)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 18
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=98.56 E-value=1.2e-08 Score=72.33 Aligned_cols=70 Identities=23% Similarity=0.385 Sum_probs=15.3
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc-cceeeccceeeccccccceeeEeccCCCcC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE-ISVVRAISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~-~~~~~~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
++|+| .++||+|+|+|++..++|.|.|++ ||+|..|+..+ +.+...+..-...++.....+.|....+|.
T Consensus 41 d~d~C-~~~pC~n~g~C~~~~~~y~C~C~~-G~~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~ 111 (134)
T 2vh0_B 41 DGDQC-ETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111 (134)
T ss_dssp ------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEE
T ss_pred CcCcC-CCCCCCCcCCcccCCCCEEeeCCC-CccCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcE
Confidence 67899 699999999999999999999999 99999999865 545432221111455556667777776654
No 19
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=98.45 E-value=2.2e-07 Score=60.55 Aligned_cols=69 Identities=30% Similarity=0.558 Sum_probs=51.7
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCee--ccccccCcccee-eccceeeccccccceeeEeccCCCcCC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFE--GIYCEKVEISVV-RAISMRVRGSRKKLRLIECEDGAGMDP 97 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~--G~~Ce~~~~~~~-~~~~~~~r~~~~~~~~~~C~~~~~mvp 97 (124)
++|+|..++||.| ++|++..++|.|.|++ ||. |..|+ +++++. ..++.. ..+++....+.|....+|..
T Consensus 4 dideC~~~~~C~~-g~C~n~~g~y~C~C~~-Gy~~~g~~C~-dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g 75 (82)
T 1emn_A 4 DMDECKEPDVCKH-GQCINTDGSYRCECPF-GYILAGNECV-DTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEP 75 (82)
T ss_dssp CCCSSSSTTSCSS-SEECCCSSCCCEECCT-TEEEETTEEE-ECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCC
T ss_pred ccccCCCCCCcCC-CEEEecCCCEEEECCC-CeECCCCccC-CcccccCCCCCCC-CEeECCCCCEEeECCCCeEe
Confidence 6789932489987 7999999999999999 997 99994 556664 344433 35666777788888777654
No 20
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=98.44 E-value=5.1e-08 Score=59.04 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCCCCCCCeeee----CCCCceEEecCCCeeccccccCc
Q psy10055 32 HDPCKHGGICIS----TDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 32 ~nPC~ngG~C~~----~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
++||+|||+|+. ..++|.|.|++ ||+|.+||...
T Consensus 13 ~~pC~NGGtC~~~~~~~~~~y~C~C~~-Gf~G~~Ce~~~ 50 (52)
T 3ca7_A 13 AWYCLNDAHCFAVKIADLPVYSCECAI-GFMGQRCEYKE 50 (52)
T ss_dssp HHTSCTTCEEEEEEETTEEEEEEECCT-TEESTTSCEEC
T ss_pred CCcCCCCCEEecCccCCCCCEEEECCC-CCcCCCCcccc
Confidence 569999999996 34679999999 99999998653
No 21
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=98.40 E-value=1.6e-07 Score=65.75 Aligned_cols=36 Identities=36% Similarity=0.960 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCeeeeCC--CCceEEecCCCeecccccc
Q psy10055 27 DPCEEHDPCKHGGICISTD--SGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~--~~y~C~C~~tg~~G~~Ce~ 64 (124)
|+| .++||.++++|++.. ++|.|.|++ ||+|..|+.
T Consensus 1 d~C-~~~pC~~~g~C~~~~~~g~~~C~C~~-G~~G~~C~~ 38 (143)
T 4d90_A 1 DIC-DPNPCENGGICLPGLADGSFSCECPD-GFTDPNCSS 38 (143)
T ss_dssp --C-CSCCCGGGCEEEC-----CCEEECCT-TCCTTTTCS
T ss_pred CcC-CCCcCCCCCEeeCCCCCCCEEeECCC-CCCCCCCcc
Confidence 579 699999999999866 579999999 999999986
No 22
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=98.36 E-value=3.3e-07 Score=64.38 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=48.5
Q ss_pred CCCCCCeeeeCC--CCc-eEEecCCCeeccccccCcc-ceeeccceeeccccccce-eeEeccCCCcCC
Q psy10055 34 PCKHGGICISTD--SGP-ICECRNLDFEGIYCEKVEI-SVVRAISMRVRGSRKKLR-LIECEDGAGMDP 97 (124)
Q Consensus 34 PC~ngG~C~~~~--~~y-~C~C~~tg~~G~~Ce~~~~-~~~~~~~~~~r~~~~~~~-~~~C~~~~~mvp 97 (124)
||+|||+|++.. .+| +|.|++ +|+|.+|+.+.. ++....+..+|+...... ...|..|.+..+
T Consensus 2 pC~nggtC~~~~~~~~~~~C~Cp~-g~~G~~Ce~~~~~~C~~g~G~~YrG~~~~t~sG~~Cq~W~s~~~ 69 (122)
T 2fd6_A 2 DCLNGGTCVSNKYFSNIHWCNCPK-KFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATV 69 (122)
T ss_dssp CCCSSCEEEECTTTTTCEEEECCT-TEESTTSCEESSCCSBCSSCTTCCSCCCBBTTSCBBCCTTSTTG
T ss_pred CCCCcCCcCCCcccCCCCCccCCC-CCCCccccccCcCCCcccccccceeeccccccCCcccCccCCCc
Confidence 899999999874 566 999999 999999998865 555455566777665543 488999977554
No 23
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=98.36 E-value=2e-07 Score=61.07 Aligned_cols=68 Identities=24% Similarity=0.423 Sum_probs=50.0
Q ss_pred ccCCCCCCCC--CCCCCeeeeCCCCceEEecCCCee-----ccccccCccceeeccce-eeccccccceeeEeccCCCcC
Q psy10055 25 VLDPCEEHDP--CKHGGICISTDSGPICECRNLDFE-----GIYCEKVEISVVRAISM-RVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 25 ~~d~C~~~nP--C~ngG~C~~~~~~y~C~C~~tg~~-----G~~Ce~~~~~~~~~~~~-~~r~~~~~~~~~~C~~~~~mv 96 (124)
++|+| ..+| |.++ +|++..++|.|.|++ ||+ |..|+ +++++...+.. ....+++....+.|....+|.
T Consensus 2 dideC-~~~~~~C~~g-~C~n~~g~y~C~C~~-Gy~~~~~~g~~C~-dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~ 77 (86)
T 1lmj_A 2 DIDEC-RISPDLCGRG-QCVNTPGDFECKCDE-GYESGFMMMKNCM-DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 77 (86)
T ss_dssp CCCTT-TTCSSTTTTS-CEEEETTEEEECCCS-SEEECTTTSSSEE-ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSC
T ss_pred ccccc-cCCCCCCCCC-EEECCCCCEEeeCCC-CcCccCCCCCccC-CcccccCCCCcCCCCEeEcCCCCEEEECcCCcc
Confidence 57899 5766 9876 999999999999999 998 78896 66666544421 123466667778888776664
No 24
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=98.28 E-value=2.3e-07 Score=57.74 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=27.6
Q ss_pred CCCCCCeee--e--CCCCceEEecCCCeeccccccCc
Q psy10055 34 PCKHGGICI--S--TDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 34 PC~ngG~C~--~--~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
||+|||+|+ + ..+.|.|.|++ ||+|.+||...
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~-Gf~G~~Ce~~~ 50 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAI-GFMGQRCEYKE 50 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECT-TEESSSSCEEC
T ss_pred cCCCCCEEeCCccCCCCCEEeECCC-CCccCCCcccC
Confidence 999999998 3 44578999999 99999998754
No 25
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=98.28 E-value=2.2e-07 Score=61.06 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=48.4
Q ss_pred ccCCCCCCCC--CCCCCeeeeCCCCceEEecCCCee----ccccccCccceeeccceeeccccccceeeEecc
Q psy10055 25 VLDPCEEHDP--CKHGGICISTDSGPICECRNLDFE----GIYCEKVEISVVRAISMRVRGSRKKLRLIECED 91 (124)
Q Consensus 25 ~~d~C~~~nP--C~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce~~~~~~~~~~~~~~r~~~~~~~~~~C~~ 91 (124)
++|+| ..+| | ++++|++..++|.|.|++ ||+ |..|+ +++++...++. ..+++.+..|.|..
T Consensus 2 dideC-~~~~~~C-~~~~C~n~~g~y~C~C~~-G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C 68 (87)
T 1z6c_A 2 DVDEC-SLKPSIC-GTAVCKNIPGDFECECPE-GYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYC 68 (87)
T ss_dssp CSCSS-SSSSSSB-TTSSCCCBTTBCCCSSST-TCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEEC
T ss_pred ccccc-cCCCCCC-CCCEeECCCCCEEEECCC-CceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEEC
Confidence 56899 6888 9 889999999999999999 999 88995 66777555553 35667777777777
No 26
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=98.23 E-value=3.8e-07 Score=78.31 Aligned_cols=39 Identities=33% Similarity=0.856 Sum_probs=36.0
Q ss_pred cCCCCCCCCCCCCCeeee-CCCCceEEec-CCCeeccccccCc
Q psy10055 26 LDPCEEHDPCKHGGICIS-TDSGPICECR-NLDFEGIYCEKVE 66 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~-~~~~y~C~C~-~tg~~G~~Ce~~~ 66 (124)
.|+| .++||+|||+|++ ..++|.|.|+ + ||+|.+||...
T Consensus 2 ~d~C-~~~PC~ngG~C~~~~~~~y~C~C~~~-G~~G~~Ce~~~ 42 (553)
T 1q4g_A 2 VNPC-CYYPCQHQGICVRFGLDRYQCDCTRT-GYSGPNCTIPE 42 (553)
T ss_dssp CCGG-GGCCCCTTCEEEEETTTEEEEECTTS-SEETTTTCEEC
T ss_pred CCcC-CCCCCCCCCCcCCCCCCceEeeCCCC-CcCCCCCCCCc
Confidence 5789 6999999999999 8999999999 8 99999999865
No 27
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=98.19 E-value=8.8e-07 Score=62.38 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=50.3
Q ss_pred ccCCCCCCC---CCCCCCeeeeCCCCceEEecCCCeecc------------ccccCccceee--ccceeeccccccceee
Q psy10055 25 VLDPCEEHD---PCKHGGICISTDSGPICECRNLDFEGI------------YCEKVEISVVR--AISMRVRGSRKKLRLI 87 (124)
Q Consensus 25 ~~d~C~~~n---PC~ngG~C~~~~~~y~C~C~~tg~~G~------------~Ce~~~~~~~~--~~~~~~r~~~~~~~~~ 87 (124)
++++| ... ||.++++|++..++|.|.|++ ||+|. .|+ +++++.. .++.....+++....+
T Consensus 43 dideC-~~~~~~~C~~~~~C~n~~g~y~C~C~~-Gy~g~~~~~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n~~g~y 119 (143)
T 2bou_A 43 DINEC-ATLSKVSCGKFSDCWNTEGSYDCVCSP-GYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSY 119 (143)
T ss_dssp ECCGG-GC----CCCTTEEEEECSSCEEEEECT-TEEETTCCSCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEECSSCE
T ss_pred ccccc-cCCCCCCCCCCCEEEcCCCCeEeECCC-CcccCcCccccccCCCCCcC-CccCccCcCCCCCCCCEEECCCCCE
Confidence 67899 454 999999999999999999999 99987 443 4444432 3444334566666778
Q ss_pred EeccCCCcCC
Q psy10055 88 ECEDGAGMDP 97 (124)
Q Consensus 88 ~C~~~~~mvp 97 (124)
.|....+|..
T Consensus 120 ~C~C~~Gy~g 129 (143)
T 2bou_A 120 SCRCRPGWKP 129 (143)
T ss_dssp EEECCSSSCB
T ss_pred EeeCCCCccc
Confidence 8877766644
No 28
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=98.18 E-value=1.4e-06 Score=63.12 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=50.8
Q ss_pred CCCCCCeeeeC--CCCc-eEEecCCCeeccccccCcc-ceeeccceeeccccccce-eeEeccCCCcCC
Q psy10055 34 PCKHGGICIST--DSGP-ICECRNLDFEGIYCEKVEI-SVVRAISMRVRGSRKKLR-LIECEDGAGMDP 97 (124)
Q Consensus 34 PC~ngG~C~~~--~~~y-~C~C~~tg~~G~~Ce~~~~-~~~~~~~~~~r~~~~~~~-~~~C~~~~~mvp 97 (124)
||+|||+|+.. ...| .|.|++ +|.|.+|+.+.. ++....+..+|+.+..+. ...|..|.+..+
T Consensus 14 pC~NGGtC~~~~~~s~~~~C~Cp~-g~~G~~Cei~~~~~C~~g~G~~YrG~~s~T~sG~~Cq~W~s~~~ 81 (145)
T 2i9a_A 14 DCLNGGTCVSNKYFSNIHWCNCPK-KFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATV 81 (145)
T ss_dssp CCCTTCEEEECSSSTTCEEEECCT-TEESTTSCEESSCCEECTTCTTCCSCCCBBTTSCBCCCTTSTTG
T ss_pred CCCCCCCcCCCccccCCccccCCC-CCCCCceeccccccCCCCCccccccceecCCcCCcccCCccCCc
Confidence 89999999876 3566 899999 999999998865 566667778888886544 489999977654
No 29
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=98.11 E-value=6.9e-07 Score=76.41 Aligned_cols=50 Identities=54% Similarity=0.632 Sum_probs=38.7
Q ss_pred cceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
|.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||+.
T Consensus 134 p~~~~R~~v~epl~TGikaID~--l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~ 188 (513)
T 3oaa_A 134 PGVIERQSVDQPVQTGYKAVDS--MIPIGRGQRELIIGDRQTGKTALAIDAIINQRD 188 (513)
T ss_dssp CCSSSCCCCCCBCCCSCHHHHH--HSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSS
T ss_pred CCccccCCcCcccccceeeecc--ccccccCCEEEeecCCCCCcchHHHHHHHhhcc
Confidence 44455555555544 566666 556 999999999999999999999999974
No 30
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=98.11 E-value=1.3e-06 Score=75.66 Aligned_cols=39 Identities=33% Similarity=0.811 Sum_probs=34.5
Q ss_pred cCCCCCCCCCCCCCeeee-CCCCceEEec-CCCeeccccccCc
Q psy10055 26 LDPCEEHDPCKHGGICIS-TDSGPICECR-NLDFEGIYCEKVE 66 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~-~~~~y~C~C~-~tg~~G~~Ce~~~ 66 (124)
+|+| .++||+|||+|++ ..++|.|.|+ + ||+|.+|+...
T Consensus 1 vd~C-~s~PC~ngG~C~~~~~~~y~C~C~~~-G~~G~~Ce~~~ 41 (587)
T 3nt1_A 1 ANPC-CSNPCQNRGECMSTGFDQYKCDCTRT-GFYGENCTTPE 41 (587)
T ss_dssp CCTT-TTCCCCTTCEEEEEETTEEEEECTTS-SEETTTTCEEC
T ss_pred CCCC-CCCCCCCCCEeeCCCCCCeEEecCCC-CccCCCCCCch
Confidence 3789 6999999999995 5689999999 8 99999999863
No 31
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=98.07 E-value=1.4e-06 Score=63.83 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=55.0
Q ss_pred cccccccc------ccCCCCC----CCCCCCCCeeeeCC-----CCceEEecCCCeeccccccCccceeeccceeecccc
Q psy10055 17 CHYSVENS------VLDPCEE----HDPCKHGGICISTD-----SGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSR 81 (124)
Q Consensus 17 c~~~v~~~------~~d~C~~----~nPC~ngG~C~~~~-----~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~r~~~ 81 (124)
|..++... ++++| . ++||.++++|++.. ++|.|.|++ ||+|..++-.++++...++.....++
T Consensus 29 C~~G~~g~~~~~C~~id~C-~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~-G~~g~~~~C~~d~C~~~~C~~~g~C~ 106 (186)
T 1z1y_A 29 CNEGLVHLSENTCEEXNEC-XXETLGXACGEFGQCIENPDPAQVNMYXCGCIE-GYTLXEDTCVLDVCQYXNCGESGECI 106 (186)
T ss_dssp ECTTEEEEETTEEEECCCC-SGGGTTSEEETTEEEEECSSTTSSCSEEEEECT-TEEEETTEEEEGGGTTCCCCTTEEEE
T ss_pred CCCCCccCCCCccCCCCcc-cCCCCCCCCCCCCEeecCCCCcCCCCEECCCCC-CCccCCCCCCCCcCcCCCCCCCCEEe
Confidence 55666543 67899 6 78999999999998 899999999 99998554334555444443333344
Q ss_pred ----ccceeeEeccCCCcCC
Q psy10055 82 ----KKLRLIECEDGAGMDP 97 (124)
Q Consensus 82 ----~~~~~~~C~~~~~mvp 97 (124)
.....+.|....+|..
T Consensus 107 ~~~~~~~g~~~C~C~~Gy~g 126 (186)
T 1z1y_A 107 VEYLSEIQSAGCSCAIGXVP 126 (186)
T ss_dssp EEEETTEEEEEEEECTEEEE
T ss_pred eCCcCCCCCceEECCCCCcc
Confidence 4555677777766643
No 32
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.97 E-value=3.3e-06 Score=72.17 Aligned_cols=50 Identities=50% Similarity=0.568 Sum_probs=38.5
Q ss_pred cceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 73 ISMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 73 ~~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
|.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||+.
T Consensus 135 p~~~~R~~v~epl~TGiraID~--l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 135 PGIMSRRSVYEPLQTGLIAIDA--MIPVGRGQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp CCSSSBCCCCSBCCCSCTTTTT--TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred CCcccccccCCcccccceeccc--ccccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 34445555555444 566666 556 999999999999999999999999973
No 33
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=97.97 E-value=2.8e-06 Score=60.38 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=35.4
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
.+.| .++||+++|+|++..+.|.|.|++ ||+|.+||...
T Consensus 119 ~~~c-~~~~C~~~g~C~~~~~~~~c~C~~-g~~G~~Ce~~~ 157 (162)
T 1g1s_A 119 TASC-QDMSCSKQGECLETIGNYTCSCYP-GFYGPECEYVR 157 (162)
T ss_dssp ECCC-CTTGGGGSEEEEECSSSEEEEECT-TEESTTSCEEC
T ss_pred eCCC-cCCCCCCCCEEecCCCCceEeCCC-CCcCcccccCc
Confidence 4678 699999999999999999999999 99999998763
No 34
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=97.94 E-value=4.3e-06 Score=73.07 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=53.8
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCC-ceE-EecCCCeec--cccccCccceeecc--ceeec---cccccceeeEec-cCCC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSG-PIC-ECRNLDFEG--IYCEKVEISVVRAI--SMRVR---GSRKKLRLIECE-DGAG 94 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~-y~C-~C~~tg~~G--~~Ce~~~~~~~~~~--~~~~r---~~~~~~~~~~C~-~~~~ 94 (124)
++++| .++||.++++|++..++ |+| .|++ ||+| ..|+ ++++|...+ +.... .++.....+.|. +..+
T Consensus 2 DIDeC-~~nPC~~gg~C~n~~~Gsy~C~~C~~-GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~G 78 (634)
T 1yo8_A 2 DPDGC-LSNPCFPGAQCSSFPDGSWSCGFCPV-GFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPR 78 (634)
T ss_dssp --CGG-GGCCSCTTCCEEECTTSCEEECCCCT-TBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTT
T ss_pred ccccc-CCCCCCCCCEEecCCCCCeECCcCCC-ccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCC
Confidence 46889 69999999999998865 999 9999 9998 8996 667776555 55444 566677778888 7766
Q ss_pred cCCC
Q psy10055 95 MDPP 98 (124)
Q Consensus 95 mvp~ 98 (124)
|.+.
T Consensus 79 y~G~ 82 (634)
T 1yo8_A 79 YRGN 82 (634)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6543
No 35
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.91 E-value=3.2e-06 Score=72.18 Aligned_cols=49 Identities=57% Similarity=0.675 Sum_probs=37.2
Q ss_pred ceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 74 SMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 74 ~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||+.
T Consensus 135 ~~~~R~~v~epl~TGiraID~--l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 188 (502)
T 2qe7_A 135 GVMDRKSVHEPLQTGIKAIDS--MIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG 188 (502)
T ss_dssp CTTSBCCCCSBCCCSCHHHHH--SSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS
T ss_pred CcccccCCCCccccceeeccc--ccccccCCEEEEECCCCCCchHHHHHHHHHhhc
Confidence 3444555544444 555666 555 999999999999999999999999973
No 36
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.90 E-value=2.3e-06 Score=73.17 Aligned_cols=48 Identities=56% Similarity=0.704 Sum_probs=36.2
Q ss_pred ceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 74 SMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 74 ~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||+
T Consensus 135 ~~~~R~~v~epl~TGiraID~--l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 135 GIIPRISVREPMQTGIKAVDS--LVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp CSTTBCCCCSBCCCSCHHHHH--HSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred CcccccccCccccccceeecc--ccccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 3444444444443 455555 555 99999999999999999999999996
No 37
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.88 E-value=3.3e-06 Score=72.28 Aligned_cols=49 Identities=57% Similarity=0.674 Sum_probs=36.6
Q ss_pred ceeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhccC
Q psy10055 74 SMRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQKR 124 (124)
Q Consensus 74 ~~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~~ 124 (124)
.+..|..+..++. +.-++. |.| |||++|||++|+|||+||+|+|+||+.
T Consensus 148 ~~~~R~~v~epl~TGiraID~--l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~ 201 (515)
T 2r9v_A 148 GVIYRKPVDTPLQTGIKAIDS--MIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG 201 (515)
T ss_dssp CGGGBCCCCSEECCSCHHHHH--HSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT
T ss_pred CcccccCCCcchhcCcccccc--ccccccCCEEEEEcCCCCCccHHHHHHHHHhhc
Confidence 3344444444443 455555 556 999999999999999999999999973
No 38
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=97.87 E-value=8.6e-06 Score=66.00 Aligned_cols=40 Identities=28% Similarity=0.775 Sum_probs=35.7
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
.+.| .++||+|+|+|++.+++|.|.|+.++|.|+.|+...
T Consensus 185 ~~~C-~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~~ 224 (410)
T 3asi_A 185 STTC-QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPG 224 (410)
T ss_dssp SSCC-CTTSSSTTCEEEECSSSEEEECTTTSEESTTSCEEC
T ss_pred CCCc-ccccCCCCCEecCCCCCceEeccCCcccCCCCCCCc
Confidence 4679 699999999999999999999995599999998754
No 39
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=97.80 E-value=1.1e-05 Score=58.97 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=46.8
Q ss_pred CCCCCCCCCeeeeCCCCceEEecCCCeecc---ccccCcccee----eccceeeccccccc-----eeeEeccCCCcCC
Q psy10055 31 EHDPCKHGGICISTDSGPICECRNLDFEGI---YCEKVEISVV----RAISMRVRGSRKKL-----RLIECEDGAGMDP 97 (124)
Q Consensus 31 ~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~---~Ce~~~~~~~----~~~~~~~r~~~~~~-----~~~~C~~~~~mvp 97 (124)
.++||.|| +|++..++|.|.|++ ||+|. .|+ +++++. ..++.....++... ..+.|....+|..
T Consensus 9 ~~~pC~ng-~C~~~~g~~~C~C~~-G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g 84 (186)
T 1z1y_A 9 VDTICXNG-QLVQMSNHFXCMCNE-GLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTL 84 (186)
T ss_dssp TTCCCBTE-EEEECSSCEEEEECT-TEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEE
T ss_pred CCCCCCCC-EeECCCCCeEeECCC-CCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCcc
Confidence 58999987 999999999999999 99988 887 445554 23444434455555 5677777766643
No 40
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=97.72 E-value=2.1e-05 Score=68.67 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=57.4
Q ss_pred Cccccccccc-----cccCCCCCCCC--CCCCC---eeeeCCCCceEE-ecCCCeeccccc--------------cCccc
Q psy10055 14 CQYCHYSVEN-----SVLDPCEEHDP--CKHGG---ICISTDSGPICE-CRNLDFEGIYCE--------------KVEIS 68 (124)
Q Consensus 14 ~~~c~~~v~~-----~~~d~C~~~nP--C~ngG---~C~~~~~~y~C~-C~~tg~~G~~Ce--------------~~~~~ 68 (124)
|..|..++.. .++++| ..+| |.+++ +|++..++|.|. |++ ||+|..|+ +++++
T Consensus 27 C~~C~~GytGdg~~CeDiDEC-~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~-Gy~G~~c~g~g~~~~~~dg~~C~dide 104 (634)
T 1yo8_A 27 CGFCPVGFLGNGTHCEDLDEC-ALVPDICFSTSKVPRCVNTQPGFHCLPCPP-RYRGNQPVGVGLEAAKTEKQVCEPENP 104 (634)
T ss_dssp ECCCCTTBCSCSSSCCBCCTT-TTSCCCSCCCSSSCCEEECSSSEEECCCCT-TEEECCCEESSSHHHHSCCCCEEECCT
T ss_pred CCcCCCccCCCCCCccccccc-cCCCCcccCCccccceeeccCceecccCCC-CcccCccccccccccccCCCccccccc
Confidence 4456666544 478999 6888 99999 999999999999 999 99999876 33445
Q ss_pred eee--ccceeeccccccc----eeeEeccCCCcC
Q psy10055 69 VVR--AISMRVRGSRKKL----RLIECEDGAGMD 96 (124)
Q Consensus 69 ~~~--~~~~~~r~~~~~~----~~~~C~~~~~mv 96 (124)
|.. .++.....++... ..+.|.+..+|.
T Consensus 105 C~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~ 138 (634)
T 1yo8_A 105 CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYA 138 (634)
T ss_dssp TTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEE
T ss_pred ccCCCcccccCccccccccccccceeeeccCCcc
Confidence 532 2444434455555 567777776664
No 41
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=97.64 E-value=2.3e-06 Score=67.85 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=43.3
Q ss_pred ccccccccccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccce
Q psy10055 17 CHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISV 69 (124)
Q Consensus 17 c~~~v~~~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~ 69 (124)
|+.+......++| .++||+|+|+|++...+|+|.||+ ||+|.+|+.+++++
T Consensus 90 c~~G~~c~~~~eC-~s~pC~ngG~C~~~~~sy~C~C~~-Gf~G~~Ce~~~d~C 140 (267)
T 4fbr_A 90 WVLGARDKQNIVA-VSIKSNDGGKTLTGTTTYNGEGPI-GFKSEVTDGDTYSV 140 (267)
T ss_dssp EECCCCSSCCEEE-EEEECSSTTSEEEEEEEETTSCCE-EEEEEECCCCEEEE
T ss_pred eeccCcccccccc-CCCCCCCCCEEecCCccEEeeCCC-CccccCCCCCcccc
Confidence 4445555566789 699999999999999999999999 99999999987663
No 42
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.63 E-value=3.9e-05 Score=61.93 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCeeeeCCCCceEEecCCCee---ccccccCccceee-ccceeeccccccceeeEeccCCCcC
Q psy10055 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFE---GIYCEKVEISVVR-AISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~---G~~Ce~~~~~~~~-~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
|+| ..+||..+.+|++..++|.|.|++ ||. |..|+ ++++|.. .++. ..+++....+.|....+|.
T Consensus 1 ~eC-~~~~~~c~~~C~~~~~~y~C~C~~-G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~g~~~C~C~~g~~ 69 (400)
T 3p5b_L 1 NEC-LDNNGGCSHVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQ 69 (400)
T ss_dssp CCT-TTTGGGCSSEEEECSSSEEEECCT-TEEECSSSCEE-ECCCCSTTSSCS--SCCBCCSSSCBCCCCTTCC
T ss_pred Ccc-cCCCCCCCCEeECCCCCeEEECCC-CCCcCCCCccc-CchhhhccCCCC--CccCCCccceeeecccccc
Confidence 578 588988889999999999999999 998 88995 6666642 2332 2566666677777766553
No 43
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=97.63 E-value=1.7e-05 Score=55.79 Aligned_cols=38 Identities=29% Similarity=0.814 Sum_probs=34.7
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.+.| .++||+++|+|.+.+..|.|.|.+ +|+|.+||++
T Consensus 119 ~~~~-~~~pc~~~g~C~~~~~~~~c~C~~-g~~g~~Ce~~ 156 (157)
T 1g1t_A 119 TAAC-TNTSCSGHGECVETINNYTCKCDP-GFSGLKCEQI 156 (157)
T ss_dssp ECCC-CTTGGGGSEEEEEETTEEEEEECT-TEESTTSCEE
T ss_pred cCCC-CCCCCCCCCEeecCCCCeeEECCC-CccCcccccc
Confidence 4678 589999999999999999999999 9999999875
No 44
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=97.57 E-value=2.8e-05 Score=54.90 Aligned_cols=34 Identities=32% Similarity=0.738 Sum_probs=30.2
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccc
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIY 61 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~ 61 (124)
++|+| .++||.| |+|++..++|.|.|++ ||+|..
T Consensus 3 dideC-~~~pC~n-g~C~n~~g~y~C~C~~-G~~g~~ 36 (147)
T 2w86_A 3 DIDEC-ESSPCIN-GVCKNSPGSFICECSS-ESTLDP 36 (147)
T ss_dssp CCCGG-GGCCSBT-SEEEEETTEEEEECCT-TEEECT
T ss_pred cCccC-cCCCCCC-CEeECCCCCEEeECCC-CcccCC
Confidence 67899 6999998 5999999999999999 999753
No 45
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=97.55 E-value=2.4e-05 Score=53.42 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=28.3
Q ss_pred CCCCCCCCCCC--C---CeeeeCCCCceEEecCCCeec---cccccCccceee-ccceeeccccccceeeEeccCCCcC
Q psy10055 27 DPCEEHDPCKH--G---GICISTDSGPICECRNLDFEG---IYCEKVEISVVR-AISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 27 d~C~~~nPC~n--g---G~C~~~~~~y~C~C~~tg~~G---~~Ce~~~~~~~~-~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
+.| +.+||.+ + .+|++..++|.|.|++ ||.| ..|+ +++++.. .++. ..+++....+.|....+|.
T Consensus 25 ~~C-d~neC~~~~~~C~~~C~n~~g~y~C~C~~-Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~C~C~~Gy~ 98 (107)
T 2w2n_E 25 GAM-GTNECLDNNGGCSYVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQ 98 (107)
T ss_dssp CCB-SCCGGGTGGGGCSSEEECCSBSCEEECCT-TCEEETTTEEE-C--------------------------------
T ss_pred CCC-cCccCcCCCCCCCCEeEeCCCCeEEECCC-CccccCCCccc-cccccCCCCCcC--CeeecCCCCEEEECCCCce
Confidence 445 4566653 2 3899999999999999 9998 8898 6777742 3442 4566777778887765553
No 46
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=97.53 E-value=2.9e-05 Score=56.47 Aligned_cols=76 Identities=22% Similarity=0.436 Sum_probs=52.9
Q ss_pred cccccccccccCCCCCCCC-CCCCCeeeeCCCCceEEecCCCeeccccccCccceee-ccceeecccccc-ceeeEeccC
Q psy10055 16 YCHYSVENSVLDPCEEHDP-CKHGGICISTDSGPICECRNLDFEGIYCEKVEISVVR-AISMRVRGSRKK-LRLIECEDG 92 (124)
Q Consensus 16 ~c~~~v~~~~~d~C~~~nP-C~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~-~~~~~~r~~~~~-~~~~~C~~~ 92 (124)
.|..++....=++| ..+| |.|| +|+ +.|.|.|++ ||+|..|+.+++++.. .++.....++.. +..+.|...
T Consensus 86 ~C~~G~~G~~C~~C-~~~~~C~~g-~C~---~~~~C~C~~-G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~ 159 (169)
T 2vj2_A 86 RCQYGWQGLYCDKC-IPHPGCVHG-ICN---EPWQCLCET-NWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCP 159 (169)
T ss_dssp EECTTEESSSSCEE-CCCTTCSSE-ECS---STTCCEECT-TEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECC
T ss_pred ECCCCCCCCCcccC-CCCCCCCCC-CcC---CCCEEeCCC-CCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECC
Confidence 37777776655567 4666 8877 887 578999999 9999999877766643 455554455653 556677766
Q ss_pred CCcCC
Q psy10055 93 AGMDP 97 (124)
Q Consensus 93 ~~mvp 97 (124)
.+|.+
T Consensus 160 ~G~~G 164 (169)
T 2vj2_A 160 EGYSG 164 (169)
T ss_dssp TTCCS
T ss_pred CCCcC
Confidence 66765
No 47
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=97.49 E-value=3.1e-06 Score=67.11 Aligned_cols=58 Identities=12% Similarity=-0.031 Sum_probs=48.2
Q ss_pred cCCCCccccccccccccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccce
Q psy10055 10 LCSDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISV 69 (124)
Q Consensus 10 ~~~~~~~c~~~v~~~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~ 69 (124)
.|..+.+|..++..+....| .++||+|+|+|++...+|+|.||+ ||+|..|+.+.+++
T Consensus 150 pC~ngg~c~~G~~c~~~i~c-~~~~c~ngg~C~dg~~~y~C~Cp~-Gf~G~~c~~~i~ec 207 (267)
T 4fbr_A 150 PWHSGGVWVLGTRGKQNVIN-VDAKSNDGGKTLSGTMTYNGEGPI-GFRGTLTSPDTYTV 207 (267)
T ss_dssp CCEEEEEEECCSSTTSCEEE-EEEECSSTTSEEEEEEEETTSCCE-EEEEEEEETTEEEE
T ss_pred cccCCcceeccccccccccc-CCCCCCCCCEeeCCCCCeEEeCCC-Ccccccccccccee
Confidence 45566677777766655567 589999999999999999999999 99999999987764
No 48
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=97.37 E-value=9.9e-05 Score=67.80 Aligned_cols=42 Identities=26% Similarity=0.745 Sum_probs=36.4
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccc
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEIS 68 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~ 68 (124)
.+.| .++||+|||+|++.+++|.|.|+.++|+|+.|+.+...
T Consensus 1017 ~~~C-~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~~~ 1058 (1245)
T 3qcw_A 1017 STTC-QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 1058 (1245)
T ss_dssp CCCC-CTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBCCCE
T ss_pred cCce-ECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCCCce
Confidence 3679 69999999999999999999999339999999887543
No 49
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=97.35 E-value=8e-05 Score=53.32 Aligned_cols=37 Identities=32% Similarity=0.815 Sum_probs=32.4
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCee----ccccc
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFE----GIYCE 63 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce 63 (124)
++|+|..++||. +++|+++.++|.|.|++ ||+ |..|+
T Consensus 2 dideC~~~~~C~-~~~C~n~~gsy~C~C~~-Gy~~~~~g~~C~ 42 (162)
T 1uzk_A 2 DVNECLDPTTCI-SGNCVNTPGSYICDCPP-DFELNPTRVGCV 42 (162)
T ss_dssp CCCGGGSTTSSB-TSEEEEETTEEEEECCT-TCEECTTSSBEE
T ss_pred ccccCCCCCCCC-CCEeECCCCCEEEeCCC-CCeECCCCCccc
Confidence 578993259997 58999999999999999 998 89997
No 50
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.34 E-value=5e-05 Score=60.80 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=8.8
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCee----ccccccCcccee-eccceeeccccccceeeEeccCCCcC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFE----GIYCEKVEISVV-RAISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce~~~~~~~-~~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
++|+| ..+|+....+|.+..++|.|.|++ ||. |..| +++++|. ..++.. .+.+....+.|....+|.
T Consensus 2 ~~~~C-~~~~~~c~~~C~~~~g~~~C~C~~-G~~l~~~~~~C-~d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~ 73 (386)
T 3v65_B 2 GEENC-NVNNGGCAQKCQMIRGAVQCTCHT-GYRLTEDGRTC-QDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYE 73 (386)
T ss_dssp -----------------------------------------------------CCTT--EEC-----CCEECCTTEE
T ss_pred CcCcc-cCCCCCCCCCCcCCCCCcEeECCC-CceECCCCCcc-CccceeCCcCcccC--cCCCCCCCCeEEECCCce
Confidence 46789 577766666898888889999999 998 8999 5666664 233332 366666666666665553
No 51
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=97.32 E-value=0.0001 Score=48.66 Aligned_cols=37 Identities=35% Similarity=0.792 Sum_probs=28.4
Q ss_pred ccCCCCC---CCCCCCCCeee--eCCCCceEEecCCCeecccccc
Q psy10055 25 VLDPCEE---HDPCKHGGICI--STDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 25 ~~d~C~~---~nPC~ngG~C~--~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
..++| . .++|.|| +|+ ...+.+.|.|++ ||+|.+||.
T Consensus 36 ~~~pC-~~~~~~yClnG-~C~~i~~~~~~~C~C~~-GYtG~RCE~ 77 (79)
T 1xdt_R 36 KRDPC-LRKYKDFCIHG-ECKYVKELRAPSCICHP-GYHGERCHG 77 (79)
T ss_dssp ---CT-TTTTTTCCSSE-EECCBGGGTBCCEEECT-TEESTTCCE
T ss_pred cCCCC-CccccCcCCCC-EeeeecCCCCeEEEcCC-Ccccccccc
Confidence 34678 5 7899998 995 333678999999 999999985
No 52
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=97.30 E-value=0.00019 Score=42.32 Aligned_cols=32 Identities=31% Similarity=0.764 Sum_probs=25.8
Q ss_pred ccCCCCC---------CCCCCCCCeeeeCCCCceEEecCCCeec
Q psy10055 25 VLDPCEE---------HDPCKHGGICISTDSGPICECRNLDFEG 59 (124)
Q Consensus 25 ~~d~C~~---------~nPC~ngG~C~~~~~~y~C~C~~tg~~G 59 (124)
++|+|.. ..||. .+|+++.++|.|.|++ ||.+
T Consensus 3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~-Gy~~ 43 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRP-GYEL 43 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECST-TCEE
T ss_pred ccccccCcccccccccCCCCC--CEeECCCCCeEEECCC-CCeE
Confidence 5678832 26897 4999999999999999 9974
No 53
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=97.30 E-value=0.00016 Score=50.63 Aligned_cols=64 Identities=16% Similarity=0.403 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCCeeeeCCCCceEEecCCCeec---------cccccCccceeec---cceeeccccccceeeEeccCCC
Q psy10055 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEG---------IYCEKVEISVVRA---ISMRVRGSRKKLRLIECEDGAG 94 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G---------~~Ce~~~~~~~~~---~~~~~r~~~~~~~~~~C~~~~~ 94 (124)
..| ++||.++++|++. |.|.|++ ||+| ..|+ +++++... ++.....++.....+.|....+
T Consensus 3 ~~C--~~~C~~~~~C~~~---~~C~C~~-G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~G 75 (143)
T 2bou_A 3 RGC--ARWCPQDSSCVNA---TACRCNP-GFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPG 75 (143)
T ss_dssp CCC--CTTCCTTEEESSS---SCEEECT-TEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTT
T ss_pred CCC--cCcCCCCCEEcCC---CEEeCCC-CCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCC
Confidence 346 6899999999875 8999999 9998 5774 45555432 4443345566666777777766
Q ss_pred cCC
Q psy10055 95 MDP 97 (124)
Q Consensus 95 mvp 97 (124)
|..
T Consensus 76 y~g 78 (143)
T 2bou_A 76 YEP 78 (143)
T ss_dssp EEE
T ss_pred ccc
Confidence 643
No 54
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=97.28 E-value=9.8e-05 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.969 Sum_probs=12.6
Q ss_pred CCeeeeCCCCceEEecCCCeeccccc
Q psy10055 38 GGICISTDSGPICECRNLDFEGIYCE 63 (124)
Q Consensus 38 gG~C~~~~~~y~C~C~~tg~~G~~Ce 63 (124)
.|.|++ .|.|.|++ ||+|..|+
T Consensus 76 ~g~C~~---~~~C~C~~-G~~G~~C~ 97 (169)
T 2vj2_A 76 HGSCKL---PGDCRCQY-GWQGLYCD 97 (169)
T ss_dssp TEECSS---TTCCEECT-TEESSSSC
T ss_pred CcccCC---CCeeECCC-CCCCCCcc
Confidence 344544 35666666 66666664
No 55
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=97.28 E-value=0.00012 Score=47.34 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=34.1
Q ss_pred ccccccc-----cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccc
Q psy10055 17 CHYSVEN-----SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIY 61 (124)
Q Consensus 17 c~~~v~~-----~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~ 61 (124)
|..++.+ .++|+|..++||.|+ +|++..++|.|.|++ ||.|..
T Consensus 30 C~~Gy~~~g~~C~dideC~~~~~C~~~-~C~n~~g~y~C~C~~-G~~g~~ 77 (82)
T 1emn_A 30 CPFGYILAGNECVDTDECSVGNPCGNG-TCKNVIGGFECTCEE-GFEPGP 77 (82)
T ss_dssp CCTTEEEETTEEEECCGGGTCCTTSSS-CEEECSSSEEECCSS-SSCCCS
T ss_pred CCCCeECCCCccCCcccccCCCCCCCC-EeECCCCCEEeECCC-CeEeCC
Confidence 6666642 367899337899985 999999999999999 998753
No 56
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=97.24 E-value=0.00017 Score=51.13 Aligned_cols=39 Identities=23% Similarity=0.582 Sum_probs=34.2
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
...| .+++|+++|+|++....|.|.|++ ||.|..|+.+.
T Consensus 119 ~~~~-~~~~C~~~g~C~~~~~~~~c~C~~-g~~g~~C~~~~ 157 (164)
T 3cfw_A 119 TASC-QPWSCSGHGECVEIINNYTCNCDV-GYYGPQCQFVQ 157 (164)
T ss_dssp ECCC-CTTSSCSSEEEEEETTEEEEEECT-TCBSSSSCBC-
T ss_pred cCCC-CCCcCCCCCeecccCCCceeeeCC-Ccccccccccc
Confidence 3467 589999999999999999999999 99999998764
No 57
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=97.19 E-value=0.00018 Score=49.39 Aligned_cols=33 Identities=27% Similarity=0.676 Sum_probs=23.4
Q ss_pred ccCCCCCCCCCCCCCeeeeC-CCCceEEecCCCeeccc
Q psy10055 25 VLDPCEEHDPCKHGGICIST-DSGPICECRNLDFEGIY 61 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~-~~~y~C~C~~tg~~G~~ 61 (124)
++|+| .++||++ +|++. .++|.|.|++ ||+|..
T Consensus 3 dideC-~~~pC~~--~C~~~~~g~y~C~C~~-Gy~g~~ 36 (118)
T 1dx5_I 3 PVDPC-FRANCEY--QCQPLDQTSYLCVCAE-GFAPIP 36 (118)
T ss_dssp CCCGG-GGCCCSS--EEEECSSSCEEEECCT-TEEEET
T ss_pred ccccC-CCCCCCC--CCCCCCCCCEEeECCC-CccccC
Confidence 56777 5777774 77777 6777777777 777764
No 58
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=97.14 E-value=0.00026 Score=42.80 Aligned_cols=32 Identities=31% Similarity=0.811 Sum_probs=27.1
Q ss_pred CCCCCCCCeeee--CCCCceEEecCCCeeccccccC
Q psy10055 32 HDPCKHGGICIS--TDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 32 ~nPC~ngG~C~~--~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.++|.|| +|.. ..+.+.|.|++ ||+|.+||..
T Consensus 13 ~~yC~nG-~C~~~~~~~~~~C~C~~-gy~G~RCe~~ 46 (50)
T 3e50_C 13 TQFCFHG-TCRFLVQEDKPACVCHS-GYVGARCEHA 46 (50)
T ss_pred cCcccCC-EEeeccCCCCeEEECCC-CCcccCCCce
Confidence 5789998 9985 34679999999 9999999864
No 59
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=97.13 E-value=0.00022 Score=42.95 Aligned_cols=32 Identities=31% Similarity=0.810 Sum_probs=26.7
Q ss_pred CCCCCCCCeee--eCCCCceEEecCCCeeccccccC
Q psy10055 32 HDPCKHGGICI--STDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 32 ~nPC~ngG~C~--~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.+.|.| |+|. ...+.+.|.|++ ||+|.+||..
T Consensus 13 ~~yC~n-G~C~~~~~~~~~~C~C~~-gy~G~RCe~~ 46 (50)
T 1iox_A 13 KHYCIK-GRCRFVVAEQTPSCVCDE-GYIGARCERV 46 (50)
T ss_dssp TTSCTT-CCEEEETTTTEEEECCCT-TEETTTTCEE
T ss_pred cCcccC-CEEEeEcCCCCeEEECCC-CcccCCCCee
Confidence 578999 6996 344678999999 9999999875
No 60
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=97.10 E-value=0.00024 Score=65.28 Aligned_cols=40 Identities=30% Similarity=0.825 Sum_probs=35.1
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
.+.| .++||+|+|+|.+.+..|.|.|+.++|.|++|+.+.
T Consensus 619 ~~~C-~~~pC~ngg~C~~~~~~~~C~C~~~g~~G~~C~~~~ 658 (1245)
T 3qcw_A 619 AKPC-LSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 658 (1245)
T ss_dssp SCGG-GSCCCCTTCEEEECSSSEEEECTTTTEESTTSCEEC
T ss_pred CCCC-CccCCCCCCEEeCCCCCeEEECCCCCcccccCcccc
Confidence 4679 699999999999999999999993399999998753
No 61
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=97.09 E-value=0.00017 Score=47.56 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=44.5
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccc-cCccceeeccceeeccccccc--eeeEeccCCCcCCC
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE-KVEISVVRAISMRVRGSRKKL--RLIECEDGAGMDPP 98 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce-~~~~~~~~~~~~~~r~~~~~~--~~~~C~~~~~mvp~ 98 (124)
++++| ..+||.|+ .++|.|.|++ ||+ .|+ .+++.+..+++.....++... ..+.|....+|.+.
T Consensus 16 ~~~~c-~~~pC~n~------~~~y~C~C~~-G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~ 82 (91)
T 1tpg_A 16 QQHQS-WLRPVLRS------NRVEYCWCNS-GRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 82 (91)
T ss_dssp CSSCE-EEEECSSS------SCEEEEECSS-SCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSS
T ss_pred CCCcc-cCCccccC------CCCcEeECCC-CCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCC
Confidence 45667 57777655 5789999999 998 898 566666656665544555554 66888887777543
No 62
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=96.99 E-value=0.00038 Score=52.68 Aligned_cols=34 Identities=38% Similarity=0.998 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
..| ..+|.|||.|+.. ..|.|++ ||.|..|+...
T Consensus 149 ~~C--~~~C~ngG~Cv~P---~~C~C~~-Gw~G~~C~~~~ 182 (188)
T 2ygo_A 149 AEC--PGGCRNGGFCNER---RICECPD-GFHGPHCEGTK 182 (188)
T ss_dssp CCC--TTCCCTTCEECTT---SCEECCT-TCBTTTTCBC-
T ss_pred Ccc--CCCCCCCCEeCCC---CcccCcC-CCCCCCCcCCc
Confidence 457 4799999999875 5899999 99999998753
No 63
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=96.96 E-value=0.00047 Score=41.59 Aligned_cols=31 Identities=26% Similarity=0.718 Sum_probs=25.9
Q ss_pred CCCCCCCCeee--eCCCCceEEecCCCeecccccc
Q psy10055 32 HDPCKHGGICI--STDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 32 ~nPC~ngG~C~--~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
.+.|.|| +|. ...+.+.|.|++ +|+|.+||.
T Consensus 17 ~~yC~nG-~C~~i~~~~~~~C~C~~-gy~G~RCe~ 49 (50)
T 2rnl_A 17 QNFCIHG-ECKYIEHLEAVTCKCQQ-EYFGERCGE 49 (50)
T ss_dssp GGTCSSS-EEEEETTTTEEEEECCS-SCCSSSCCC
T ss_pred hCcCCCC-EEEEecCCCCeeEECCC-Ccccccccc
Confidence 4789986 997 444678999999 999999985
No 64
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=96.82 E-value=0.00043 Score=47.45 Aligned_cols=73 Identities=16% Similarity=0.353 Sum_probs=48.5
Q ss_pred cccccccc--ccCCCC---CCCCCCCCCeeeeCCCCceEEecCCCee---ccccccCccceee-ccceeeccccccceee
Q psy10055 17 CHYSVENS--VLDPCE---EHDPCKHGGICISTDSGPICECRNLDFE---GIYCEKVEISVVR-AISMRVRGSRKKLRLI 87 (124)
Q Consensus 17 c~~~v~~~--~~d~C~---~~nPC~ngG~C~~~~~~y~C~C~~tg~~---G~~Ce~~~~~~~~-~~~~~~r~~~~~~~~~ 87 (124)
|..++.+. ++++|. ..+||. ++|++ .++|.|.|++ ||+ |..| ++++++.. .++ ...+++....|
T Consensus 28 C~~Gy~g~~~~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~-Gy~~~~g~~C-~dideC~~~~~C--~~~C~n~~g~y 100 (118)
T 1dx5_I 28 CAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-NTQASCECPE-GYILDDGFIC-TDIDECENGGFC--SGVCHNLPGTF 100 (118)
T ss_dssp CCTTEEEETTEEEEEEECCCSSEEE--CEECT-TSTTCEECCT-TEEEETTTEE-EECCHHHHCSSC--SSEEEECSSSE
T ss_pred CCCCccccCCCCCccccccCCCCCC--CcccC-CCCeEeECCC-CccCCCCCcc-ccccccCCCCCC--cCeEEeCCCCE
Confidence 55566553 233441 355555 78988 5889999999 999 8999 46666654 444 33456666778
Q ss_pred EeccCCCcC
Q psy10055 88 ECEDGAGMD 96 (124)
Q Consensus 88 ~C~~~~~mv 96 (124)
.|....+|.
T Consensus 101 ~C~C~~G~~ 109 (118)
T 1dx5_I 101 ECICGPDSA 109 (118)
T ss_dssp EEEECSSSS
T ss_pred EEECCCCCc
Confidence 888776664
No 65
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=96.68 E-value=0.00035 Score=49.17 Aligned_cols=43 Identities=26% Similarity=0.559 Sum_probs=33.7
Q ss_pred cccccccc------cccCCCCCCC--CCCCCCeeeeCCCCceEEecCCCeeccc
Q psy10055 16 YCHYSVEN------SVLDPCEEHD--PCKHGGICISTDSGPICECRNLDFEGIY 61 (124)
Q Consensus 16 ~c~~~v~~------~~~d~C~~~n--PC~ngG~C~~~~~~y~C~C~~tg~~G~~ 61 (124)
.|..+++. .++|+| ..+ +|+|+ +|+++.++|.|.|++ ||+|..
T Consensus 91 ~C~~Gy~~~~g~~C~dideC-~~~~~~C~~g-~C~n~~g~y~C~C~~-Gy~g~~ 141 (147)
T 2w86_A 91 ICGKGYSRIKGTQCEDIDEC-EVFPGVCKNG-LCVNTRGSFKCQCPS-GMTLDA 141 (147)
T ss_dssp TTCTTEEEEETTEEEECCHH-HHSTTCSSSS-EEEEETTEEEEECCT-TCCBCT
T ss_pred cCCCccccCCCCccCccccc-cCCCCCCCCC-EEECCCCCEEeeCCC-CCccCC
Confidence 46677642 378899 554 49986 999999999999999 998653
No 66
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=96.58 E-value=0.00045 Score=44.72 Aligned_cols=33 Identities=36% Similarity=0.926 Sum_probs=28.0
Q ss_pred ccCCCCCCCC--CCCCCeeeeCCCCceEEecCCCeecc
Q psy10055 25 VLDPCEEHDP--CKHGGICISTDSGPICECRNLDFEGI 60 (124)
Q Consensus 25 ~~d~C~~~nP--C~ngG~C~~~~~~y~C~C~~tg~~G~ 60 (124)
++|+| ..+| |. +++|+++.++|.|.|++ ||.+.
T Consensus 45 dideC-~~~~~~C~-~~~C~n~~g~y~C~C~~-G~~~~ 79 (86)
T 1lmj_A 45 DIDEC-QRDPLLCR-GGVCHNTEGSYRCECPP-GHQLS 79 (86)
T ss_dssp ECCHH-HHCSSTTT-TSEEEEETTEEEEESCT-TSCCC
T ss_pred Ccccc-cCCCCcCC-CCEeEcCCCCEEEECcC-CcccC
Confidence 67889 5777 65 57999999999999999 99764
No 67
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.41 E-value=0.00062 Score=56.80 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=23.0
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCccceeeccceeeccccc
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSRK 82 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~~~~~~~~~~~r~~~~ 82 (124)
.+.| . .+|+| |+|+.. +.|.|++ ||+|.+|+.. .|.. +|.....++.
T Consensus 392 ~~~C-~-~~C~n-G~C~~~---~~C~C~~-G~~G~~C~~~--~C~~-~C~~~g~C~~ 438 (463)
T 2wg3_C 392 TSEC-S-RLCRN-GYCTPT---GKCCCSP-GWEGDFCRTA--KCEP-ACRHGGVCVR 438 (463)
T ss_dssp CCHH-H-HHCCS-EEECTT---SCEEECT-TEESTTSCEE--CC-------------
T ss_pred cccc-c-CCCCC-CccCCC---CeECCCC-CcCCCcCCcC--cCCC-CCCCCCEECC
Confidence 4556 2 36777 678753 4788888 8888888643 3432 4444444443
No 68
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.40 E-value=0.0023 Score=40.73 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=27.1
Q ss_pred ccCCCCC-CCCCCCCCeeeeCCCCceEEecCCCeec
Q psy10055 25 VLDPCEE-HDPCKHGGICISTDSGPICECRNLDFEG 59 (124)
Q Consensus 25 ~~d~C~~-~nPC~ngG~C~~~~~~y~C~C~~tg~~G 59 (124)
++|+|.. .++|.++++|+++.++|.|.+...||.+
T Consensus 2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~ 37 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIN 37 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCS
T ss_pred ccccccCCCCCCCCCCEeECCCCCeEecccCCcccc
Confidence 5788931 3679999999999999999965436753
No 69
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.38 E-value=0.0014 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.4
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
|||++|||++|+|||+|+ +.|+||
T Consensus 175 GQR~lIfg~~g~GKT~Ll-~~Ia~~ 198 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTIL-KEIANG 198 (427)
T ss_dssp TCEEEEEECTTCCHHHHH-HHHHHH
T ss_pred CceEEEecCCCCChhHHH-HHHHHH
Confidence 999999999999999999 556664
No 70
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=96.34 E-value=0.00074 Score=48.19 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=29.1
Q ss_pred cccCCCCCC--CCCCCCCeeeeCCCCceEEecCCCeeccc
Q psy10055 24 SVLDPCEEH--DPCKHGGICISTDSGPICECRNLDFEGIY 61 (124)
Q Consensus 24 ~~~d~C~~~--nPC~ngG~C~~~~~~y~C~C~~tg~~G~~ 61 (124)
.++|+| .. +||+| ++|+++.++|.|.|++ ||+|..
T Consensus 120 ~dideC-~~~~~~C~~-g~C~n~~gsy~C~C~~-Gy~g~~ 156 (162)
T 1uzk_A 120 EDIDEC-QELPGLCQG-GKCINTFGSFQCRCPT-GYYLNE 156 (162)
T ss_dssp EECCHH-HHCGGGGBT-SEEEECSSCEEEECCT-TCCBCT
T ss_pred Cccccc-cCCCCCcCC-CEeEcCCCCEEeeCCC-CccCCC
Confidence 367889 54 46997 5999999999999999 998753
No 71
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=96.31 E-value=0.0011 Score=43.01 Aligned_cols=46 Identities=20% Similarity=0.519 Sum_probs=34.8
Q ss_pred ccccccc-------cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCcc
Q psy10055 17 CHYSVEN-------SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEI 67 (124)
Q Consensus 17 c~~~v~~-------~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~~ 67 (124)
|..++.+ .++++| .++||. ++|++..++|.|.|+ ++.|..++.+..
T Consensus 29 C~~G~~~~~~g~~C~dideC-~~~~C~--~~C~n~~g~y~C~C~--g~~G~~~~~~~~ 81 (87)
T 1z6c_A 29 CPEGYRYNLKSKSCEDIDEC-SENMCA--QLCVNYPGGYTCYCD--GKKGFKLAQDQK 81 (87)
T ss_dssp SSTTCEEETTTTEEECCCHH-HHSCCS--SEECCCSSSCCEECC--SSSCCBCCTTSS
T ss_pred CCCCceECCCCCcCCCcCee-CCCCCC--CEEEccCCCEEEECC--CCcCCcccCCCC
Confidence 6666653 377899 689998 699999999999997 456666665543
No 72
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.23 E-value=0.0022 Score=54.48 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.8
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
++-++. |.| |||++|||+.|+|||+|+.++|.||
T Consensus 141 ir~ID~--l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 141 IKVVDL--LAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp CHHHHH--HSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEec--ccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 444555 445 9999999999999999999999997
No 73
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.99 E-value=0.0024 Score=53.97 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=32.9
Q ss_pred eeecccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 75 MRVRGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 75 ~~~r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+..|.....++. +.-++. |.| |||++|||++|+|||+|+. .|+||.
T Consensus 121 p~~R~~~~e~l~TGiraID~--l~pigrGQr~~Ifgg~G~GKt~L~~-~Ia~~~ 171 (464)
T 3gqb_B 121 PVARRKPEQFIQTGISTIDV--MNTLVRGQKLPIFSGSGLPANEIAA-QIARQA 171 (464)
T ss_dssp GGGBCCCCCBCBCSCHHHHT--TSCCBTTCBCCEEEETTSCHHHHHH-HHHHHC
T ss_pred hhhccCccccccCcceeeec--ccccccCCEEEEecCCCCCchHHHH-HHHHHH
Confidence 334444444433 566666 555 9999999999999999985 677774
No 74
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=95.98 E-value=0.0038 Score=43.91 Aligned_cols=38 Identities=21% Similarity=0.510 Sum_probs=31.3
Q ss_pred cCCCCCCCCCCCCC---eeeeCCC-CceEEecCCCee----ccccccC
Q psy10055 26 LDPCEEHDPCKHGG---ICISTDS-GPICECRNLDFE----GIYCEKV 65 (124)
Q Consensus 26 ~d~C~~~nPC~ngG---~C~~~~~-~y~C~C~~tg~~----G~~Ce~~ 65 (124)
++.| .+.+|.+++ +|++..+ +|.|.|++ ||. |.+|+..
T Consensus 85 ~~~c-~~c~~~~~~C~~~C~~~~g~~y~C~C~~-Gy~l~~dG~~C~~~ 130 (142)
T 2c4f_L 85 KDDQ-LICVNENGGCEQYCSDHTGTKRSCRCHE-GYSLLADGVSCTPT 130 (142)
T ss_dssp GGGC-CSTTTGGGGCSSEEECCTTSCCEEECCT-TEEECTTSSCEEES
T ss_pred cccc-ccccCCCCCccCEeECCCCCCEEEECCC-CceECCCCCCCCCC
Confidence 3566 456777888 9999998 99999999 999 9999754
No 75
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=95.96 E-value=0.0021 Score=51.34 Aligned_cols=39 Identities=21% Similarity=0.567 Sum_probs=31.0
Q ss_pred cccCCCCC--CCCCCCCCeeeeCCCCceEEecCCCee--cccccc
Q psy10055 24 SVLDPCEE--HDPCKHGGICISTDSGPICECRNLDFE--GIYCEK 64 (124)
Q Consensus 24 ~~~d~C~~--~nPC~ngG~C~~~~~~y~C~C~~tg~~--G~~Ce~ 64 (124)
.++|+| . ..+|..++.|+++.++|.|.|.+ ||. |..|..
T Consensus 3 ~DiDEC-~~~~~~C~~~a~C~Nt~Gsy~C~C~~-Gy~GnG~~C~d 45 (285)
T 1gl4_A 3 LAQQTC-ANNRHQCSVHAECRDYATGFCCRCVA-NYTGNGRQCVA 45 (285)
T ss_dssp ----CH-HHHGGGSCTTEEEEECSSCEEEEECT-TEEECSSSEEE
T ss_pred ccchhc-cCCCCCCCCCCEeEcCCCCeEEEcCC-CCCCCCCcCCC
Confidence 467889 4 56899999999999999999999 998 788854
No 76
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.87 E-value=0.0042 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=24.4
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
|||.+|||+.|+|||+|+.++|.|+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~ 189 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI 189 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH
Confidence 9999999999999999999999996
No 77
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.79 E-value=0.0029 Score=50.42 Aligned_cols=46 Identities=24% Similarity=0.645 Sum_probs=20.4
Q ss_pred cccccccc-------cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCee----cccccc
Q psy10055 16 YCHYSVEN-------SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFE----GIYCEK 64 (124)
Q Consensus 16 ~c~~~v~~-------~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce~ 64 (124)
.|..++++ .++++|..++||.++ |+++.++|.|.|++ ||. |..|..
T Consensus 27 ~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~--C~~~~g~~~C~C~~-g~~l~~d~~~C~~ 83 (386)
T 3v65_B 27 TCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSEGAFQCWCEA-GYELRPDRRSCKA 83 (386)
T ss_dssp -------------------------CCTTE--EC-----CCEECCT-TEEECTTSSCEEE
T ss_pred ECCCCceECCCCCccCccceeCCcCcccCc--CCCCCCCCeEEECC-CceEcCCCCeECC
Confidence 47777763 367889436799875 99999999999999 998 888964
No 78
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.79 E-value=0.0064 Score=53.82 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCC-----eeeeCCCCceEEecCCCee---ccccccCccceeeccceeeccccccceeeEeccCCCc
Q psy10055 27 DPCEEHDPCKHGG-----ICISTDSGPICECRNLDFE---GIYCEKVEISVVRAISMRVRGSRKKLRLIECEDGAGM 95 (124)
Q Consensus 27 d~C~~~nPC~ngG-----~C~~~~~~y~C~C~~tg~~---G~~Ce~~~~~~~~~~~~~~r~~~~~~~~~~C~~~~~m 95 (124)
+.| ..++|.++. .|+++.++|.|.|++ ||. |..|+ +++++. .+..-...+++....+.|....+|
T Consensus 308 ~~C-~~~~C~~~~~~C~~~C~~~~~~y~C~C~~-Gy~l~~g~~C~-dideC~-~~~~C~~~C~n~~gsy~C~C~~Gy 380 (791)
T 3m0c_C 308 KEC-GTNECLDNNGGCSHVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQ-DPDTCSQLCVNLEGGYKCQCEEGF 380 (791)
T ss_dssp TTB-SCCSTTTGGGGCSSEEEECSBSEEEECCT-TCEEETTTEEE-CCCCCS-SSSSCTTTCCBCSSCBCCCCCSSE
T ss_pred ccc-ccccccccccCccccccCCCCCcccCCCC-CCccCCCCccc-cCcccC-CCCCCCCeeecCCCCceeecCCCC
Confidence 347 578888765 899999999999999 995 88896 555553 222222345566666666665555
No 79
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=95.74 E-value=0.0017 Score=44.00 Aligned_cols=41 Identities=24% Similarity=0.727 Sum_probs=5.2
Q ss_pred ccccccc------cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeecc
Q psy10055 17 CHYSVEN------SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGI 60 (124)
Q Consensus 17 c~~~v~~------~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~ 60 (124)
|..++.+ .++|+|..++||. ++|++..++|.|.|++ ||.+.
T Consensus 54 C~~Gy~g~~g~~C~dideC~~~~~C~--~~C~n~~gsy~C~C~~-Gy~~~ 100 (107)
T 2w2n_E 54 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEE-GFQLD 100 (107)
T ss_dssp CCTTCEEETTTEEEC-----------------------------------
T ss_pred CCCCccccCCCccccccccCCCCCcC--CeeecCCCCEEEECCC-CceEC
Confidence 6666654 3788994248897 6999999999999999 99864
No 80
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=95.66 E-value=0.0046 Score=46.49 Aligned_cols=36 Identities=19% Similarity=0.669 Sum_probs=30.2
Q ss_pred CCCCCC--CCCCCCCeeeeCCCCceEEecCCCee----ccccccCc
Q psy10055 27 DPCEEH--DPCKHGGICISTDSGPICECRNLDFE----GIYCEKVE 66 (124)
Q Consensus 27 d~C~~~--nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce~~~ 66 (124)
++| .. .+|.+ +|++..++|.|.|++ ||. |..|+...
T Consensus 82 deC-~~~~~~C~~--~C~n~~gsy~C~C~~-Gy~l~~dG~~C~~~~ 123 (195)
T 1nfu_B 82 KLC-SLDNGDCDQ--FCHEEQNSVVCSCAR-GYTLADNGKACIPTG 123 (195)
T ss_dssp CGG-GTGGGGCSS--EEEEETTEEEEECCT-TEEECTTSSCEEESS
T ss_pred ccc-cCCCCCCCC--EeECCCCCeEEECCC-CceeCCCCCccccCC
Confidence 678 45 36776 999999999999999 999 99998653
No 81
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=95.47 E-value=0.0049 Score=53.43 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=31.8
Q ss_pred cccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 78 RGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 78 r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
|.....++. +.-++. |.| |||++|||++|+|||+|+. .|+||+
T Consensus 198 R~~~~epl~TGirvID~--l~PigrGqr~~Ifg~~g~GKT~l~~-~ia~~~ 245 (578)
T 3gqb_A 198 KLDPNTPFLTGMRILDV--LFPVAMGGTAAIPGPFGSGKSVTQQ-SLAKWS 245 (578)
T ss_dssp EECSCSEECCSCHHHHT--TSCEETTCEEEECCCTTSCHHHHHH-HHHHHS
T ss_pred hccCCCcccccchhhhh--cccccCCCEEeeeCCCCccHHHHHH-HHHhcc
Confidence 333444433 566666 556 9999999999999999999 567764
No 82
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.47 E-value=0.0038 Score=52.78 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.4
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchh----hhHHHHHhcc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTA----LAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~----~~~~~~~~q~ 123 (124)
+.-++. |.| |||++|||++|+|||+ ||.++.+||+
T Consensus 140 ir~ID~--l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~ 181 (469)
T 2c61_A 140 ISTIDG--TNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGS 181 (469)
T ss_dssp CHHHHT--TSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTC
T ss_pred eEeeee--eeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence 555666 445 9999999999999999 6666666664
No 83
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=95.40 E-value=0.017 Score=44.72 Aligned_cols=40 Identities=23% Similarity=0.639 Sum_probs=31.9
Q ss_pred ccccccc---c-ccCCCCCC---CCCCCCCeeeeCCCCceEEecCCCeecc
Q psy10055 17 CHYSVEN---S-VLDPCEEH---DPCKHGGICISTDSGPICECRNLDFEGI 60 (124)
Q Consensus 17 c~~~v~~---~-~~d~C~~~---nPC~ngG~C~~~~~~y~C~C~~tg~~G~ 60 (124)
|..++.. + ++++| .. +||++ +|++..++|.|.|++ ||.|.
T Consensus 30 C~~g~~g~~C~~~~~eC-~~~~~~~C~~--~C~~~~g~~~C~C~~-g~~~~ 76 (317)
T 3h5c_B 30 CSPGYEGSNCELAKNEC-HPERTDGCQH--FCLPGQESYTCSCAQ-GYRLG 76 (317)
T ss_dssp CSSSCCSSSSCCCSSSC-CTTCTTSCSS--EEECCSSSCEEECCT-TEECC
T ss_pred CCCCCcCCccccCcccC-CCCCCCCCcC--ccccCCCeeEEeccc-ccccc
Confidence 4444443 3 78899 55 89998 999999999999999 99863
No 84
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=95.35 E-value=0.0082 Score=35.98 Aligned_cols=34 Identities=21% Similarity=0.725 Sum_probs=25.4
Q ss_pred CCCCC-CCCCCCCCeeeeCCCCceEEecCCCee----ccccc
Q psy10055 27 DPCEE-HDPCKHGGICISTDSGPICECRNLDFE----GIYCE 63 (124)
Q Consensus 27 d~C~~-~nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce 63 (124)
|+|.. ..+|.+ .|+++.++|.|.|++ ||. |..|+
T Consensus 2 dEC~~~~~~C~~--~C~nt~Gsy~C~C~~-Gy~L~~d~~~C~ 40 (55)
T 2jkh_L 2 KLCSLDNGDCDQ--FCHEEQNSVVCSCAR-GYTLADNGKACI 40 (55)
T ss_dssp CCTTTGGGGCSS--EEEEETTEEEEECCT-TEEECTTSSCEE
T ss_pred ccccCCCCCcCc--EeEcCCCCeEEeCCC-CCEECCCCCeec
Confidence 55621 245764 899999999999999 996 56674
No 85
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.26 E-value=0.0062 Score=53.59 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCeeeeCCCCce---EEecCCCeeccccccCc
Q psy10055 28 PCEEHDPCKHGGICISTDSGPI---CECRNLDFEGIYCEKVE 66 (124)
Q Consensus 28 ~C~~~nPC~ngG~C~~~~~~y~---C~C~~tg~~G~~Ce~~~ 66 (124)
+| .++||.|+++|.+..+.|. |.|++ ||+|.+|+...
T Consensus 436 ~C-~~~pc~n~~~C~~g~G~~~~G~C~C~~-Gy~G~~Ce~~~ 475 (690)
T 3fcs_B 436 AC-QAQAEPNSHRCNNGNGTFECGVCRCGP-GWLGSQCECSE 475 (690)
T ss_dssp GG-GTTCCTTCTTTTTTSEEEETTEEEECT-TCCSSSSCCSC
T ss_pred CC-cCCCCCCCCcccCCCCeEeCCceEeCC-CccCCceeecc
Confidence 57 5899999999987778888 99999 99999998765
No 86
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=95.21 E-value=0.0049 Score=53.62 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=27.1
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.-++. |.| |||++|||++|+|||+|+. .|+||+
T Consensus 220 irvID~--l~PigrGqr~~Ifgg~g~GKT~L~~-~ia~~~ 256 (600)
T 3vr4_A 220 QRVIDT--FFPVTKGGAAAVPGPFGAGKTVVQH-QIAKWS 256 (600)
T ss_dssp CHHHHH--HSCCBTTCEEEEECCTTSCHHHHHH-HHHHHS
T ss_pred chhhhc--cCCccCCCEEeeecCCCccHHHHHH-HHHhcc
Confidence 455555 445 9999999999999999998 567764
No 87
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=95.19 E-value=0.0098 Score=42.19 Aligned_cols=38 Identities=24% Similarity=0.698 Sum_probs=30.8
Q ss_pred cccCCCCCCC--CCCCCCee-eeCCCCceEEecCCCee----ccccccC
Q psy10055 24 SVLDPCEEHD--PCKHGGIC-ISTDSGPICECRNLDFE----GIYCEKV 65 (124)
Q Consensus 24 ~~~d~C~~~n--PC~ngG~C-~~~~~~y~C~C~~tg~~----G~~Ce~~ 65 (124)
.++|+| ..+ +|.+ +| ++..++|.|.|++ ||. |..|+..
T Consensus 83 ~~~deC-~~~~~~C~~--~C~~n~~g~y~C~C~~-Gy~l~~dG~~C~~~ 127 (146)
T 1x7a_L 83 ELDATC-NIKNGRCKQ--FCKTGADSKVLCSCTT-GYRLAPDQKSCKPA 127 (146)
T ss_dssp CEECCT-TSGGGSCSS--BCCCCSSSCCCCBCCT-TEEECTTSSSEEEC
T ss_pred CCCccc-cCCCCCCcC--CCCCCCCCCEEeEcCC-CcEeCCCCCcCCCC
Confidence 356888 453 6766 89 8999999999999 999 8999754
No 88
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.15 E-value=0.0032 Score=54.63 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=30.9
Q ss_pred cccccccee--eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 78 RGSRKKLRL--IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 78 r~~~~~~~~--~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
|.....++. +.-++. |.| |||++|||++|+|||+|+.+ |.+|+
T Consensus 204 R~~~~epl~TGirvID~--l~PigkGqr~~I~g~~g~GKT~L~~~-ia~~~ 251 (588)
T 3mfy_A 204 KLPPEVPLITGQRVIDT--FFPQAKGGTAAIPGPAGSGKTVTQHQ-LAKWS 251 (588)
T ss_dssp EECSCSEECCSCHHHHH--HSCEETTCEEEECSCCSHHHHHHHHH-HHHHS
T ss_pred hccCCcccccCcchhhc--cCCcccCCeEEeecCCCCCHHHHHHH-HHhcc
Confidence 444444443 455555 556 99999999999999999987 56653
No 89
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.03 E-value=0.011 Score=49.98 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=27.4
Q ss_pred eEeccCCCcCC---CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 87 IECEDGAGMDP---PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 87 ~~C~~~~~mvp---~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.-++. |.| |||++|||++|+|||+|+. .|+||.
T Consensus 139 iraID~--l~pigrGQr~~Ifgg~G~GKt~L~~-~Ia~~~ 175 (465)
T 3vr4_D 139 ISAIDH--LNTLVRGQKLPVFSGSGLPHKELAA-QIARQA 175 (465)
T ss_dssp CHHHHT--TSCCBTTCBCCEEECTTSCHHHHHH-HHHHHC
T ss_pred ceEEec--ccccccCCEEEEeCCCCcChHHHHH-HHHHHH
Confidence 555565 445 9999999999999999986 577764
No 90
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=95.03 E-value=0.016 Score=46.26 Aligned_cols=29 Identities=34% Similarity=1.014 Sum_probs=18.6
Q ss_pred CCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 33 DPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 33 nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.+|.|+|+|+. .+.|.|++ ||+|.+|+..
T Consensus 185 ~~C~~~G~C~~---~~~C~C~~-G~~G~~C~~~ 213 (324)
T 2ygq_A 185 PRCMNGGLCVT---PGFCICPP-GFYGVNCDKA 213 (324)
T ss_dssp SCCCTTCEECS---SCCEECCT-TCBTTTTCBC
T ss_pred CCCCCCCEEcC---CCEEeCCC-CccCCCcccC
Confidence 46777777754 35677776 6777776643
No 91
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=95.00 E-value=0.013 Score=46.65 Aligned_cols=33 Identities=42% Similarity=1.052 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
+.| ++||.|+|+|.. .+.|.|++ ||+|..|+.+
T Consensus 149 ~~C--~~~C~~~G~C~~---~~~C~C~~-G~~G~~C~~~ 181 (324)
T 2ygq_A 149 AEC--PGGCRNGGFCNE---RRICECPD-GFHGPHCEKA 181 (324)
T ss_dssp CCC--SSCCCSSCEECT---TSCEECCT-TEESSSSCEE
T ss_pred CCC--CCCCCCCCEECC---CCeEECCC-CCcCCCCCCC
Confidence 456 579999999986 48999999 9999999864
No 92
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=94.99 E-value=0.012 Score=48.73 Aligned_cols=29 Identities=34% Similarity=0.811 Sum_probs=26.0
Q ss_pred CCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 34 PCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 34 PC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
||.|+|+|.+ +.+.|.|++ ||+|.+|+..
T Consensus 204 ~C~~~G~C~~--~~g~C~C~~-G~~G~~Ce~~ 232 (423)
T 2gy5_A 204 ACMNNGVCHE--DTGECICPP-GFMGRTCEKA 232 (423)
T ss_dssp CCCTTCEECT--TTCCEECCT-TEESTTSCEE
T ss_pred CCCCCCEEEC--CCCcEeCCC-CccCCCcccc
Confidence 8999999987 568999999 9999999864
No 93
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=94.98 E-value=0.02 Score=50.38 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=32.5
Q ss_pred cccccc----ccCCCCCC---CCCCCCCeeeeCCCCceEEecCCCeeccccc--cCccce
Q psy10055 19 YSVENS----VLDPCEEH---DPCKHGGICISTDSGPICECRNLDFEGIYCE--KVEISV 69 (124)
Q Consensus 19 ~~v~~~----~~d~C~~~---nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce--~~~~~~ 69 (124)
.++... +.+.| .. .+|.++|+|.. +.|.|++ ||+|..|+ .+.+.+
T Consensus 514 ~Gy~G~~Ce~~~~~C-~~~~~~~C~~~G~C~~----g~C~C~~-Gy~G~~CeC~~~~~~C 567 (690)
T 3fcs_B 514 GKITGKYCECDDFSC-VRYKGEMCSGHGQCSC----GDCLCDS-DWTGYYCNCTTRTDTC 567 (690)
T ss_dssp CCCBSTTSCBCSSCC-CBSSSSBGGGSEEEET----TEEEECT-TEESSSSCEECCCTTT
T ss_pred CCeeCCCcCcccCcC-cCCCCCCCCCCCEecC----CeeECcC-CCcCCCCccCCCCCcc
Confidence 555543 34667 33 48999999976 7899999 99999998 444444
No 94
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=94.96 E-value=0.011 Score=41.12 Aligned_cols=35 Identities=20% Similarity=0.695 Sum_probs=29.0
Q ss_pred CCCCCC--CCCCCCCeeeeCCCCceEEecCCCee----ccccccC
Q psy10055 27 DPCEEH--DPCKHGGICISTDSGPICECRNLDFE----GIYCEKV 65 (124)
Q Consensus 27 d~C~~~--nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce~~ 65 (124)
++| .. .+|.+ +|++..++|.|.|++ ||+ |..|+..
T Consensus 82 d~C-~~~~~~C~~--~C~~~~g~y~C~C~~-Gy~l~~~g~~C~~~ 122 (134)
T 2vh0_B 82 KLC-SLDNGDCDQ--FCHEEQNSVVCSCAR-GYTLADNGKACIPT 122 (134)
T ss_dssp CGG-GTGGGGCSS--EEEEETTEEEEECCT-TEEECTTSSCEEES
T ss_pred Ccc-ccCCCCCCC--EeECCCCCEEEECCC-CcEECCCCCccCcC
Confidence 678 45 35776 999999999999999 999 9999754
No 95
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=94.86 E-value=0.015 Score=41.94 Aligned_cols=30 Identities=30% Similarity=0.752 Sum_probs=26.3
Q ss_pred CCCCCCeeeeCC--CCceE-EecCCCeecccccc
Q psy10055 34 PCKHGGICISTD--SGPIC-ECRNLDFEGIYCEK 64 (124)
Q Consensus 34 PC~ngG~C~~~~--~~y~C-~C~~tg~~G~~Ce~ 64 (124)
||+|+++|.... +.++| .|++ +|+|.+||.
T Consensus 2 ~C~~~g~C~~~~~~g~~~C~~C~~-g~~G~~Ce~ 34 (162)
T 1klo_A 2 PCPGGSSCAIVPKTKEVVCTHCPT-GTAGKRCEL 34 (162)
T ss_dssp CSCTTCCEEECSSSCCEEECSCCT-TEESTTSCE
T ss_pred cCcCcCcccccCCCCCEEeCCCCC-CCcCCCCcC
Confidence 799999998765 56899 7999 999999986
No 96
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.77 E-value=0.016 Score=48.51 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=24.7
Q ss_pred cCCCCceeEeccCCCCchhhh--HHHHHhcc
Q psy10055 95 MDPPSRELIIGDRQTGKTALA--IDTIINQK 123 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~--~~~~~~q~ 123 (124)
...|||.+|+|+.|+|||+|+ |...|||+
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 345999999999999999999 66777775
No 97
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.67 E-value=0.021 Score=49.42 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=43.4
Q ss_pred CCCCCCCCCCC-----CeeeeCCCCceEEecCCCee---ccccccCcccee-eccceeeccccccceeeEeccCCCcC
Q psy10055 28 PCEEHDPCKHG-----GICISTDSGPICECRNLDFE---GIYCEKVEISVV-RAISMRVRGSRKKLRLIECEDGAGMD 96 (124)
Q Consensus 28 ~C~~~nPC~ng-----G~C~~~~~~y~C~C~~tg~~---G~~Ce~~~~~~~-~~~~~~~r~~~~~~~~~~C~~~~~mv 96 (124)
.| ..++|.++ .+|++..++|.|.|++ ||. |..|+ +++++. ..++ ...+++....|.|....+|.
T Consensus 291 ~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~-G~~~~~~~~C~-dideC~~~~~C--~~~C~n~~g~y~C~C~~G~~ 363 (699)
T 1n7d_A 291 EC-GTNECLDNNGGCSHVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQ 363 (699)
T ss_dssp SC-CCCCTTSSTTTSCTTCCCCTTCCCCCCCS-SSCCCSSSCCC-CCCCCSSSSSC--TTTCCBCSSCBCCCCCSSCB
T ss_pred cc-ccccccccccCcCCCcccCCCCcEEeCCC-CeEcCCCCccc-CccccCCCCcc--ccccccCCCCeeeeeecccc
Confidence 45 46666654 3789999999999999 998 88897 666664 1223 23456666667666665554
No 98
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.66 E-value=0.014 Score=49.44 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
|||.+|+|++|+|||+|+.+.+.|++
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh
Confidence 99999999999999999999998864
No 99
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.53 E-value=0.014 Score=46.83 Aligned_cols=40 Identities=25% Similarity=0.795 Sum_probs=32.3
Q ss_pred ccccccc------cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeec
Q psy10055 17 CHYSVEN------SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEG 59 (124)
Q Consensus 17 c~~~v~~------~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G 59 (124)
|..++++ .++|+|..++||.+ +|+++.++|.|.|++ ||.+
T Consensus 25 C~~G~~~~~~~~C~dideC~~~~~C~~--~C~n~~g~~~C~C~~-g~~~ 70 (400)
T 3p5b_L 25 CPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEE-GFQL 70 (400)
T ss_dssp CCTTEEECSSSCEEECCCCSTTSSCSS--CCBCCSSSCBCCCCT-TCCC
T ss_pred CCCCCCcCCCCcccCchhhhccCCCCC--ccCCCccceeeeccc-cccc
Confidence 6677663 37889944678976 899999999999999 9974
No 100
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.40 E-value=0.02 Score=46.00 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=25.1
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
....||+.+|+|.+|+|||+| +..|+++.
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTL-l~~I~g~~ 95 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTL-LGMICNGA 95 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHH-HHHHHHHS
T ss_pred eecCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 345699999999999999999 88888764
No 101
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=94.38 E-value=0.028 Score=40.02 Aligned_cols=35 Identities=31% Similarity=0.800 Sum_probs=27.6
Q ss_pred ccCCCCCCCC-----CCCCCeeeeCCCCceEEecCCCee----ccccc
Q psy10055 25 VLDPCEEHDP-----CKHGGICISTDSGPICECRNLDFE----GIYCE 63 (124)
Q Consensus 25 ~~d~C~~~nP-----C~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce 63 (124)
++++| ...+ |++ .|++..++|.|.|++ ||. |..|+
T Consensus 123 di~eC-~~~~~~~~~C~~--~C~n~~g~~~C~C~~-Gy~l~~d~~~C~ 166 (170)
T 1szb_A 123 DIDEC-QVAPGEAPTCDH--HCHNHLGGFYCSCRA-GYVLHRNKRTCS 166 (170)
T ss_dssp ECCTT-CCCTTSCCSSSS--EEEEETTEEEEECCT-TEEECTTSSCEE
T ss_pred ccCcc-cCCCCCCCccCC--ccccCCCCEEEeCCC-CcEECCCCCccc
Confidence 56789 4443 876 799999999999999 997 56664
No 102
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=94.14 E-value=0.043 Score=45.31 Aligned_cols=34 Identities=24% Similarity=0.732 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCeeeeCCCCceEEecCCCeecccccc
Q psy10055 28 PCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 28 ~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
.|...++|.++++|. .+.|.|.|++ ||+|.+|+.
T Consensus 245 ~C~~~~~C~~~g~C~--~~~~~C~C~~-G~~G~~C~~ 278 (423)
T 2gy5_A 245 RCSGQEGCKSYVFCL--PDPYGCSCAT-GWKGLQCNE 278 (423)
T ss_dssp ECCSTTTTTTCCEEE--TTTTEEECCB-TCBSGGGCB
T ss_pred cCCCCCCCCCCCEEC--CCCCeEEeCC-CcccccccC
Confidence 453256788899995 4679999999 999999986
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.67 E-value=0.04 Score=45.59 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=25.7
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.+..||+.+|+|.+|.|||+| +..|+++.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTL-l~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVL-LGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHH-HHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHH-HHHHhccc
Confidence 4456799999999999999999 88888754
No 104
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=93.53 E-value=0.017 Score=48.36 Aligned_cols=29 Identities=38% Similarity=0.894 Sum_probs=0.0
Q ss_pred CCCCCCCCeeeeCCCCceEEecCCCeecccccc
Q psy10055 32 HDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 32 ~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
..||+|||+|.+.. .|.|++ ||+|..|+.
T Consensus 370 t~~C~ngg~C~~~~---~C~C~~-G~~G~~Ce~ 398 (426)
T 3zyj_B 370 LLHCQNGGTCHNNV---RCLCPA-AYTGILCEK 398 (426)
T ss_dssp ---------------------------------
T ss_pred cccCCCCCCcCCCC---CCcCCC-CCcCCCCcC
Confidence 35899999998765 999999 999999976
No 105
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=93.35 E-value=0.055 Score=36.37 Aligned_cols=24 Identities=17% Similarity=0.556 Sum_probs=20.9
Q ss_pred eeeeCCCCceEEecCCCee----cccccc
Q psy10055 40 ICISTDSGPICECRNLDFE----GIYCEK 64 (124)
Q Consensus 40 ~C~~~~~~y~C~C~~tg~~----G~~Ce~ 64 (124)
+|++..++|.|.|++ ||+ |..|+.
T Consensus 67 ~C~n~~g~y~C~C~~-G~~~~~~g~~C~~ 94 (114)
T 1aut_L 67 YCLEEVGWRRCSCAP-GYKLGDDLLQCHP 94 (114)
T ss_dssp EEEECSSSEEEECCT-TEEECTTSSCEEE
T ss_pred EeECCCCCEEeECCC-CeeECCCCCccCc
Confidence 999999999999999 999 566654
No 106
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=93.21 E-value=0.019 Score=48.02 Aligned_cols=37 Identities=27% Similarity=0.580 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCeeeeCC--CCceEEecCCCeecccccc
Q psy10055 26 LDPCEEHDPCKHGGICISTD--SGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~--~~y~C~C~~tg~~G~~Ce~ 64 (124)
.+.| .+.+|.++|.|...- ..+.|.|++ ||+|.+|++
T Consensus 487 ~~~C-~~C~C~~~gs~~~~C~~~tG~C~C~~-G~~G~~Ceq 525 (525)
T 4aqs_A 487 LDGC-RPCDCDLGGALNNSCSEDSGQCSCLP-HMIGRQCNE 525 (525)
T ss_dssp -----------------------------------------
T ss_pred CCCC-cCCCCCCCCccCCccCCCCCeeECCC-CCcCCCCCC
Confidence 4568 688999999876542 345799999 999999974
No 107
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.13 E-value=0.017 Score=48.11 Aligned_cols=43 Identities=35% Similarity=0.906 Sum_probs=7.7
Q ss_pred cccccccc--ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 17 CHYSVENS--VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 17 c~~~v~~~--~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
|..++... ..+.| .+ ||+|+|+|+.. +.|.|++ ||+|.+|+..
T Consensus 412 C~~G~~G~~C~~~~C-~~-~C~~~g~C~~~---~~C~C~~-G~~G~~C~~~ 456 (463)
T 2wg3_C 412 CSPGWEGDFCRTAKC-EP-ACRHGGVCVRP---NKCLCKK-GYLGPQCEQV 456 (463)
T ss_dssp ECTTEESTTSCEECC------------------------------------
T ss_pred CCCCcCCCcCCcCcC-CC-CCCCCCEECCC---CEEECCC-CcccCCCCCC
Confidence 55666554 45678 45 99999999875 6999999 9999999865
No 108
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=92.60 E-value=0.037 Score=32.64 Aligned_cols=29 Identities=21% Similarity=0.611 Sum_probs=22.9
Q ss_pred CCCCCCCCeeeeCCCCceEEecCCCee----ccccc
Q psy10055 32 HDPCKHGGICISTDSGPICECRNLDFE----GIYCE 63 (124)
Q Consensus 32 ~nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce 63 (124)
..+|.+ .|+++.++|.|.|++ ||. |..|+
T Consensus 5 ng~C~~--~C~n~~gs~~C~C~~-Gy~L~~d~~tC~ 37 (51)
T 1kig_L 5 NGGCDQ--FCREERSEVRCSCAH-GYVLGDDSKSCV 37 (51)
T ss_dssp TTSSSS--CCCEETTEECCCCCT-TEEECTTSSCEE
T ss_pred CCCcCC--EeEcCCCCeEEeCCC-CcEECCCCCccc
Confidence 345654 589999999999999 996 67775
No 109
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=92.30 E-value=0.063 Score=40.75 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=27.9
Q ss_pred CCCCCCCCeeeeCCCCceEEecCCC------eeccccccCcccee
Q psy10055 32 HDPCKHGGICISTDSGPICECRNLD------FEGIYCEKVEISVV 70 (124)
Q Consensus 32 ~nPC~ngG~C~~~~~~y~C~C~~tg------~~G~~Ce~~~~~~~ 70 (124)
+.||.++|+|+. ..|.|.+ + |+|.+|+.+.+.+.
T Consensus 142 ~~~Csg~G~C~~----g~C~C~~-gw~~~~~~~G~~Ce~~~~~C~ 181 (217)
T 2p28_B 142 SIICSGLGDCVC----GQCLCHT-SDVPGKLIYGQYCECDTINCE 181 (217)
T ss_dssp SCBGGGTEEEET----TEEEECC-CCSTTCCEESTTSCEESSCSC
T ss_pred CCCCCCCCEEeC----CceECCC-CCCCcccEECCCcccCCccCC
Confidence 578999999985 3899999 8 79999997655554
No 110
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.00 E-value=0.083 Score=38.24 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.3
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+-|+.+++-.+|.|..++|||++|+..+.|
T Consensus 24 ~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 346888999999999999999999997765
No 111
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=91.91 E-value=0.13 Score=35.75 Aligned_cols=36 Identities=22% Similarity=0.639 Sum_probs=26.9
Q ss_pred ccCCCCCC--CCCCCCCeeeeCCCCceEEecCCCee----ccccc
Q psy10055 25 VLDPCEEH--DPCKHGGICISTDSGPICECRNLDFE----GIYCE 63 (124)
Q Consensus 25 ~~d~C~~~--nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce 63 (124)
++++|... .+|. ..|.+..++|.|.|++ ||. |..|+
T Consensus 116 d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~-Gy~l~~~~~~C~ 157 (159)
T 1nzi_A 116 DINECTDFVDVPCS--HFCNNFIGGYFCSCPP-EYFLHDDMKNCG 157 (159)
T ss_dssp ECCTTTC-CCCCSS--SEEEEETTEEEEECCT-TCEECTTSSCEE
T ss_pred cCcccCCCCCCCCC--CcccCcCCCEEEecCC-CcEECCCCCccc
Confidence 56789322 2464 5799999999999999 998 66664
No 112
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=91.77 E-value=0.08 Score=47.53 Aligned_cols=40 Identities=30% Similarity=0.691 Sum_probs=34.4
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 25 VLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 25 ~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
..+.| +-+||+|+|+++...+...|.|++ +|.|..|+...
T Consensus 496 e~~~c-~C~PC~ngg~~~l~g~~C~C~C~~-g~~G~~Ce~~~ 535 (913)
T 3t5o_A 496 KFDPC-QCAPCPNNGRPTLSGTECLCVCQS-GTYGENCEKQS 535 (913)
T ss_dssp TTCGG-GSCCBTTTBEEEEETTEEEEECCT-TBCSTTSCCBC
T ss_pred ccccc-cCCCCCCCCEeecCCCceEEEccC-CccccCccCcc
Confidence 34667 567999999999888889999999 99999998864
No 113
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=91.47 E-value=0.077 Score=46.68 Aligned_cols=42 Identities=29% Similarity=0.768 Sum_probs=32.8
Q ss_pred cccccccc------ccCCCCCCC---CCCCCCeeeeCCCCceEEecCCCeecccccc
Q psy10055 17 CHYSVENS------VLDPCEEHD---PCKHGGICISTDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 17 c~~~v~~~------~~d~C~~~n---PC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
|..+|... ..+.| ..+ +|.++|+|.. ..|.|++ ||+|++|++
T Consensus 542 C~~G~~G~~Cec~~~~~~C-~~~~g~~Cs~~G~C~~----g~C~C~~-Gy~G~~Ce~ 592 (687)
T 3k6s_B 542 CHPGFEGSACQCERTTEGC-LNPRRVECSGRGRCRC----NVCECHS-GYQLPLCQE 592 (687)
T ss_dssp ECTTCCSTTSCSCCSSCTT-BCTTCSBTSSSCCBCS----SCBCCST-TCCTTTTCC
T ss_pred cCCCCcCCCCccCCCCCCC-CCCCCCCCCCCCcCCC----CEEECCC-CCcCCCCCC
Confidence 66666654 13567 454 8999999987 5799999 999999987
No 114
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.01 E-value=0.13 Score=37.12 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.++.+++--+|+|..++|||++|+..+.+
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346778899999999999999999887654
No 115
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=90.70 E-value=0.16 Score=31.86 Aligned_cols=38 Identities=18% Similarity=0.592 Sum_probs=26.8
Q ss_pred cccCCCCCC-CCCCCCCeeeeCCC-CceEEecCCCee----cccccc
Q psy10055 24 SVLDPCEEH-DPCKHGGICISTDS-GPICECRNLDFE----GIYCEK 64 (124)
Q Consensus 24 ~~~d~C~~~-nPC~ngG~C~~~~~-~y~C~C~~tg~~----G~~Ce~ 64 (124)
.++++|... ..|++ .|+++.+ +|.|.|++ ||. |+.|..
T Consensus 3 ~d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~-Gy~L~~D~~tC~d 46 (69)
T 1kli_L 3 DDQLICVNENGGCEQ--YCSDHTGTKRSCRCHE-GYSLLADGVSCTP 46 (69)
T ss_dssp SCCCCTTSGGGGCSS--EEEEETTTEEEEECCT-TEEECTTSSCEEE
T ss_pred cccccccCCCCCcCC--EeEcCCCCCEEEeCCC-CCeECCCCCcccC
Confidence 356778311 24654 6999888 79999999 995 677753
No 116
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.75 E-value=0.16 Score=41.16 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=25.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++.++ +.+|+|+.++|||+||+..+.+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467778 8999999999999999999877
No 117
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=89.67 E-value=0.12 Score=39.12 Aligned_cols=34 Identities=32% Similarity=0.774 Sum_probs=26.9
Q ss_pred cCCCCCCC---CCCCC--CeeeeCCCCceEEecCCCeeccccccC
Q psy10055 26 LDPCEEHD---PCKHG--GICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 26 ~d~C~~~n---PC~ng--G~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.+.| ..+ +|.++ |+|.. ..|.|.+ ||+|..|+..
T Consensus 177 ~~~C-~~~~g~~C~~~~~G~C~~----g~C~C~~-G~~G~~C~~~ 215 (217)
T 2p28_B 177 TINC-ERYNGQVCGGPGRGLCFC----GKCRCHP-GFEGSACQHH 215 (217)
T ss_dssp SSCS-CEETTEETTCTTTEEEET----TEEEECT-TEESTTSCEE
T ss_pred CccC-CCCCCCCCCCCCCcEEeC----CeeECCC-CCccCCcCCC
Confidence 4567 344 79888 99985 3899999 9999999863
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.56 E-value=0.14 Score=35.81 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=19.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++...+++.-+|+|..|+|||++|-
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHH
Confidence 3334457888999999999999985
No 119
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.46 E-value=0.28 Score=42.27 Aligned_cols=45 Identities=24% Similarity=0.769 Sum_probs=34.1
Q ss_pred cccccccc------cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCeec----cccc
Q psy10055 16 YCHYSVEN------SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEG----IYCE 63 (124)
Q Consensus 16 ~c~~~v~~------~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G----~~Ce 63 (124)
.|..++++ .++++|..+++|.+ +|+++.++|.|.|++ ||.+ ..|.
T Consensus 318 ~C~~G~~~~~~~~C~dideC~~~~~C~~--~C~n~~g~y~C~C~~-G~~~~~~~~~C~ 372 (699)
T 1n7d_A 318 LCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEE-GFQLDPHTKACK 372 (699)
T ss_dssp CCCSSSCCCSSSCCCCCCCCSSSSSCTT--TCCBCSSCBCCCCCS-SCBCCSSCCCCB
T ss_pred eCCCCeEcCCCCcccCccccCCCCcccc--ccccCCCCeeeeeec-ccccCCCCCccc
Confidence 46667664 36788843678864 799999999999999 9974 5564
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.93 E-value=0.27 Score=34.87 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.3
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
++.+++--+|+|..+.|||+++.....
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 577799999999999999999987643
No 121
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.25 E-value=0.18 Score=34.24 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.1
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
+.--+|+|..|+|||++|-..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 455789999999999998643
No 122
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=88.13 E-value=0.3 Score=42.97 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=26.6
Q ss_pred CCCCCCeeeeCCCCceEEec------CCCeeccccccCcccee
Q psy10055 34 PCKHGGICISTDSGPICECR------NLDFEGIYCEKVEISVV 70 (124)
Q Consensus 34 PC~ngG~C~~~~~~y~C~C~------~tg~~G~~Ce~~~~~~~ 70 (124)
+|.++|+|.. ..|.|+ + ||+|.+|+.+...+.
T Consensus 483 ~Cs~~G~C~~----G~C~C~~~~~~~~-G~~G~~Ce~~~~~C~ 520 (687)
T 3k6s_B 483 ICSGLGDCVC----GQCLCHTSDVPGK-LIYGQYCECDTINCE 520 (687)
T ss_dssp GGGSSEEEET----TEEEECCCCSTTC-CEESTTSCEESSCSC
T ss_pred cCCCCCEEeC----CEEEcCCCCCCCC-Ccccccccccccccc
Confidence 5999999984 299999 9 999999997655554
No 123
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.65 E-value=0.36 Score=37.56 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+|+-.+|.|..+.|||++|+....+
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999998765
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.56 E-value=0.25 Score=35.32 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=18.3
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.|.++...+|+|..|.|||++|-
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHH
Confidence 345578889999999999999975
No 125
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.22 E-value=0.28 Score=34.23 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=17.0
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
.--+|+|.++.|||+| +|+|
T Consensus 24 g~~~I~G~NGsGKSti-l~Ai 43 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL-LDAI 43 (149)
T ss_dssp EEEEEECCTTSSHHHH-HHHH
T ss_pred CeEEEECCCCCCHHHH-HHHH
Confidence 3578999999999999 6766
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.21 E-value=0.34 Score=34.91 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++--+|+|..+.|||+++.....+
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45667889999999999999999887653
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.89 E-value=0.33 Score=36.15 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=18.5
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++..-+|+|..|+|||++|-
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHH
Confidence 3456778999999999999984
No 128
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=86.75 E-value=0.33 Score=28.64 Aligned_cols=27 Identities=22% Similarity=0.834 Sum_probs=21.3
Q ss_pred CCCCCCeeeeCCC-CceEEecCCCee----ccccc
Q psy10055 34 PCKHGGICISTDS-GPICECRNLDFE----GIYCE 63 (124)
Q Consensus 34 PC~ngG~C~~~~~-~y~C~C~~tg~~----G~~Ce 63 (124)
.|++ .|+++.+ +|.|.|++ ||. |+.|+
T Consensus 8 gC~~--~C~n~~ggs~~C~C~~-Gy~L~~Dg~tC~ 39 (53)
T 2bz6_L 8 GCEQ--YCSDHTGTKRSCRCHE-GYSLLADGVSCT 39 (53)
T ss_dssp GCSS--EEEEETTTEEEEECCT-TEEECTTSSCEE
T ss_pred CcCC--EeEcCCCCCEEeeCCC-CCEECCCCCccc
Confidence 3544 5999888 69999999 996 67775
No 129
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=86.19 E-value=0.31 Score=40.63 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=33.8
Q ss_pred Cccccccccc---cccCCCCCCCCCCCCCeeeeCC----CCceEEecCCCeecccccc
Q psy10055 14 CQYCHYSVEN---SVLDPCEEHDPCKHGGICISTD----SGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 14 ~~~c~~~v~~---~~~d~C~~~nPC~ngG~C~~~~----~~y~C~C~~tg~~G~~Ce~ 64 (124)
|..|..+... ...+.| .+.+|.++|+|.... ..+.|.|++ +|.|.+|++
T Consensus 420 C~~C~~Gy~G~~c~~~~~C-~~C~C~~~gtc~~~~~Cd~~tg~C~C~~-g~~G~~Ce~ 475 (525)
T 4aqs_A 420 CDVCKEGFYDLSAEDPYGC-KSCACNPLGTIPGGNPCDSETGYCYCKR-LVTGQRCDQ 475 (525)
T ss_dssp TCEECTTEECCCTTSTTSS-EECCCCTTTBCCSSCCBCTTTCCBCBCT-TCCSTTTCC
T ss_pred ccCCCCCCcCCCCCCCCCC-ccCCCCCCceecCCCcccCCCCEEECCC-CCcCCCccc
Confidence 4445555443 234567 577888888876543 356899999 999999974
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.86 E-value=0.44 Score=33.75 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.2
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
++.+|+--+|+|..|.|||+++....
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 46678888999999999999987655
No 131
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=85.74 E-value=0.35 Score=37.73 Aligned_cols=35 Identities=23% Similarity=0.651 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCeeeeCCCCceEEecCCCee----cccccc
Q psy10055 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFE----GIYCEK 64 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce~ 64 (124)
|+|..+.+|.+ .|+++.++|.|.|++ ||. +..|..
T Consensus 2 ~ec~~~~~C~~--~C~n~~g~~~C~C~~-g~~l~~d~~~C~~ 40 (349)
T 3v64_C 2 NECAEEGYCSQ--GCTNSEGAFQCWCEA-GYELRPDRRSCKA 40 (349)
T ss_dssp -------CCSS--EECCC---CCEECCT-TEEECTTSSCEEE
T ss_pred cccCCCCCCcC--eeecCCCCeEEECCC-CccCCCCCCcccc
Confidence 56732445765 699999999999999 996 677853
No 132
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.61 E-value=0.42 Score=36.64 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.0
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.++...+|+|..|+|||++|-
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHH
Confidence 4567788999999999999985
No 133
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.55 E-value=0.59 Score=35.34 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=24.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
.++.+|+-.+|+|..|.|||+++.....
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999986544
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.40 E-value=0.3 Score=33.36 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=16.2
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
....+|.|..|+|||++|-
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3458899999999999984
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.38 E-value=0.24 Score=33.67 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=16.9
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
..-.+|+|..|+|||++|...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 345689999999999998643
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.21 E-value=0.45 Score=37.93 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.+|+|..++|||+||+..+.+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46778899999999999999999998765
No 137
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.05 E-value=0.48 Score=35.69 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.0
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
++.+++-.+|+|..+.|||+|++..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999999999999999988764
No 138
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=85.00 E-value=0.45 Score=33.41 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=18.1
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.-+.+++|+.++|||+|. ..+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi-~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQ-KVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHS
T ss_pred ceEEEEECCCCCCHHHHH-HHHHh
Confidence 346789999999999994 45554
No 139
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.85 E-value=0.35 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=16.4
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
....+|.|..|+|||++|-
T Consensus 24 ~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CSCEEEESSTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4557899999999999985
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.83 E-value=0.42 Score=33.93 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.9
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+..-+|+|..|+|||++|--
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 466788999999999999854
No 141
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.76 E-value=0.44 Score=36.71 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.+|+|..++|||++|+..+.+
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45777888999999999999999998876
No 142
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.52 E-value=0.46 Score=35.07 Aligned_cols=21 Identities=43% Similarity=0.544 Sum_probs=17.4
Q ss_pred CCCCceeEeccCCCCchhhhH
Q psy10055 96 DPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~ 116 (124)
..+..-+|+|..|+|||++|-
T Consensus 43 ~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 43 KIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 345568999999999999974
No 143
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=84.50 E-value=0.97 Score=34.45 Aligned_cols=36 Identities=19% Similarity=0.544 Sum_probs=23.6
Q ss_pred ccccCCCCCCC-----CCCCCCeeeeCC------CCceEEecCCCee----cccc
Q psy10055 23 NSVLDPCEEHD-----PCKHGGICISTD------SGPICECRNLDFE----GIYC 62 (124)
Q Consensus 23 ~~~~d~C~~~n-----PC~ngG~C~~~~------~~y~C~C~~tg~~----G~~C 62 (124)
....++| ..+ .|.+ .|+..+ ++|+|.||. ||. |+.|
T Consensus 264 p~~~n~C-~~~~~~ng~Cs~--~C~~~p~~~~~~~~~~C~C~~-g~~l~~d~~~C 314 (316)
T 1ijq_A 264 PRGVNWC-ERTTLSNGGCQY--LCLPAPQINPHSPKFTCACPD-GMLLARDMRSC 314 (316)
T ss_dssp CCCCCTT-SSSSSGGGGCSS--EEEECCCCSTTCCSEEEECCT-TCEECTTSSCE
T ss_pred Ccccccc-cccccCCCCcCc--ccCCCccccCCCCCeEeeCCC-CCEECCCCCcc
Confidence 3355777 444 3543 688664 579999999 885 4555
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=84.48 E-value=0.62 Score=37.99 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.4
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
++.+|+-.+|.|..+.|||++|+....+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6888999999999999999999987765
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.46 E-value=0.49 Score=34.54 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=17.6
Q ss_pred CCCCceeEeccCCCCchhhhH
Q psy10055 96 DPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~ 116 (124)
.++...+|+|..|+|||++|-
T Consensus 37 ~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 445668899999999999985
No 146
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.35 E-value=0.63 Score=38.29 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.9
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
|+.+++-.+|.|..+.|||++|+....|
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 6889999999999999999999998776
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.27 E-value=0.38 Score=33.33 Aligned_cols=17 Identities=53% Similarity=0.519 Sum_probs=15.3
Q ss_pred eeEeccCCCCchhhhHH
Q psy10055 101 ELIIGDRQTGKTALAID 117 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~ 117 (124)
-+|.|..|+|||++|-.
T Consensus 41 ~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIA 57 (226)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 88999999999999854
No 148
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.18 E-value=0.64 Score=37.77 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=25.4
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
|+.+++-.+|.|..+.|||++|+....|
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6888999999999999999999988765
No 149
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.14 E-value=0.42 Score=34.51 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.2
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
++.+|+--+|+|.+|.|||+++.-..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56779999999999999999986543
No 150
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=84.02 E-value=0.73 Score=27.80 Aligned_cols=24 Identities=21% Similarity=0.730 Sum_probs=19.6
Q ss_pred eeeeCC-CCceEEecCCCee----cccccc
Q psy10055 40 ICISTD-SGPICECRNLDFE----GIYCEK 64 (124)
Q Consensus 40 ~C~~~~-~~y~C~C~~tg~~----G~~Ce~ 64 (124)
.|++.. ++|.|.|++ ||. |+.|..
T Consensus 12 ~C~n~~~gs~~C~C~~-Gy~L~~D~~tC~d 40 (59)
T 2wph_E 12 FCKNSADNKVVCSCTE-GYRLAENQKSCEP 40 (59)
T ss_dssp EEEECSTTCEEEECCT-TEEECTTSSCEEE
T ss_pred EeEeCCCCCEEeeCCC-CcEECCCCCcccC
Confidence 589988 599999999 995 667754
No 151
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.96 E-value=0.6 Score=36.78 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.+|+|..++|||++|+..+.+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888899999999999999998876
No 152
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.92 E-value=0.57 Score=36.45 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.7
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.+|+|..++|||++|+..+.+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 46777888999999999999999998876
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.69 E-value=0.41 Score=33.41 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=15.9
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
.--+|.|..|+|||++|--
T Consensus 46 ~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp SEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3568999999999999853
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.66 E-value=0.61 Score=34.31 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=17.2
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+..+...+|+|..|+|||+++-
T Consensus 46 ~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 46 ARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3334448999999999999974
No 155
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.48 E-value=0.73 Score=36.89 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.7
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
++.+++-.+|.|..+.|||++|+....+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999988765
No 156
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.04 E-value=0.64 Score=35.45 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=18.7
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.++..+..-+|+|..|+|||++|-
T Consensus 39 ~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 39 LGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp TTCCCCSEEEEESSTTSCHHHHHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHH
Confidence 345555558999999999999974
No 157
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.96 E-value=0.56 Score=35.19 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=17.6
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++..-+|+|..|+|||++|-
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 46778999999999999985
No 158
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=82.80 E-value=0.71 Score=31.26 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=17.3
Q ss_pred CCceeEeccCCCCchhhhHHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
.-+.+++|+.+.|||+|. ..++
T Consensus 18 ~~ki~v~G~~~~GKSsli-~~l~ 39 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALT-LQFM 39 (187)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHh
Confidence 457889999999999984 4444
No 159
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.71 E-value=0.47 Score=33.64 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.9
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+++.-.|+|+.|.|||++.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3467888999999999999985
No 160
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.71 E-value=0.6 Score=34.16 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=17.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHH
T ss_pred eecCCCCEEEEECCCCCCHHHHH
Confidence 33557888999999999999986
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.57 E-value=0.59 Score=33.26 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.6
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
++.+++.-+|+|.+|.|||+++.-..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 57789999999999999999987654
No 162
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.47 E-value=0.49 Score=34.97 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=16.6
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
.+..-+|+|..|+|||++|-
T Consensus 43 ~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHH
Confidence 34457899999999999985
No 163
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.36 E-value=0.58 Score=33.04 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=16.0
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
..-+|+|..|+|||++|.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 667899999999999975
No 164
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.29 E-value=0.62 Score=35.28 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.4
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.+...+|.|..++|||++|++.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46778999999999999999875
No 165
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.19 E-value=0.62 Score=33.92 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=16.5
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
.--+|+|.++.|||+| +|+|
T Consensus 24 ~~~~I~G~NgsGKSti-l~ai 43 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL-LDAI 43 (203)
T ss_dssp EEEEEECCTTSSHHHH-HHHH
T ss_pred CeEEEEcCCCCCHHHH-HHHH
Confidence 4568999999999998 4665
No 166
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.11 E-value=0.74 Score=31.73 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=18.2
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.-+.+++|+.+.|||||. ..+++
T Consensus 23 ~~~i~v~G~~~~GKSsli-~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFI-NSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHH-HHHHT
T ss_pred CCEEEEECCCCCCHHHHH-HHHhC
Confidence 567899999999999984 44444
No 167
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.96 E-value=0.63 Score=34.56 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=17.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
-+|.+|..-.|+|.+|.|||||.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHHH
Confidence 35778999999999999999986
No 168
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.92 E-value=0.8 Score=37.36 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=25.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.++.+++-.+|+|..+.|||+|+...+++
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 456778999999999999999999987654
No 169
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.92 E-value=0.72 Score=35.50 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=18.6
Q ss_pred CCCCceeEeccCCCCchhhhHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~ 117 (124)
.++.--+|+|..|+|||++|.-
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4567789999999999999864
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.15 E-value=0.57 Score=34.90 Aligned_cols=20 Identities=45% Similarity=0.572 Sum_probs=17.2
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++..-+|+|..|+|||++|-
T Consensus 63 ~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 45668899999999999985
No 171
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.12 E-value=0.96 Score=34.85 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=18.6
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++...+|+|..|+|||++|-
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHH
Confidence 3466778999999999999984
No 172
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=81.11 E-value=0.83 Score=36.61 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.4
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.++.-.+|.|..++|||++|+..+.+
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888999999999999999988765
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=81.06 E-value=0.72 Score=33.96 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=17.9
Q ss_pred eEeccCCCcCCCCceeEeccCCCCchhhhH
Q psy10055 87 IECEDGAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 87 ~~C~~~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.++++......+...+|+|..|.||||++-
T Consensus 16 ~~~~~~~~~~~~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 16 ENLYFQSMASKLLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp ----------CCCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEECCCCCCHHHHHH
Confidence 444444444557899999999999999873
No 174
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=81.03 E-value=0.7 Score=34.67 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.5
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+..-+|+|..|+|||++|-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4457999999999999985
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.78 E-value=0.77 Score=31.89 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.0
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
+++.-+|+|..|+|||+|+--
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 677788999999999999753
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.69 E-value=1 Score=35.02 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.0
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..|+.-.+|+|..|+|||++|-
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCceEEEECCCCccHHHHHH
Confidence 4567788999999999999985
No 177
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.61 E-value=0.9 Score=34.05 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=16.0
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+...+|+|..|+|||+|+-
T Consensus 73 ~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcChHHHHHH
Confidence 3348999999999999974
No 178
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.55 E-value=0.77 Score=34.93 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=17.8
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+.-.+|+|.+|+|||+++--
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 466788999999999999854
No 179
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=80.51 E-value=0.79 Score=34.18 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCCceeEeccCCCCchhhhHHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
.+.-.+|.|+.+.|||++|+..+-
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 567789999999999999998763
No 180
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.30 E-value=0.8 Score=36.91 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-++.+++-.+|+|+.++|||+||+..+.+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56778999999999999999999988765
No 181
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.20 E-value=0.74 Score=37.85 Aligned_cols=28 Identities=4% Similarity=0.033 Sum_probs=25.6
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
++.+++-.+|.|..++|||++|+....+
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 6788999999999999999999998876
No 182
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.02 E-value=0.88 Score=33.81 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=16.6
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+..-+|+|..|+|||++|-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5568899999999999985
No 183
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=79.47 E-value=0.87 Score=34.31 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=17.0
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
+.--+|.|..|+|||++|--
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45678999999999999854
No 184
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.45 E-value=0.87 Score=35.39 Aligned_cols=19 Identities=37% Similarity=0.399 Sum_probs=16.2
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+..-+|+|..|+|||++|-
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCCEEEESSTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3567899999999999973
No 185
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=79.45 E-value=0.58 Score=35.05 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 33568999999999999999985
No 186
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=79.39 E-value=0.78 Score=40.55 Aligned_cols=45 Identities=24% Similarity=0.777 Sum_probs=32.5
Q ss_pred cccccccc------cccCCCCCCCCCCCCCeeeeCCCCceEEecCCCee----ccccc
Q psy10055 16 YCHYSVEN------SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFE----GIYCE 63 (124)
Q Consensus 16 ~c~~~v~~------~~~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce 63 (124)
.|..++++ .++|+|..+.+|. .+|+++.++|.|.|++ ||. +..|.
T Consensus 336 ~C~~Gy~l~~g~~C~dideC~~~~~C~--~~C~n~~gsy~C~C~~-Gy~l~~~~~~C~ 390 (791)
T 3m0c_C 336 LCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEE-GFQLDPHTKACK 390 (791)
T ss_dssp ECCTTCEEETTTEEECCCCCSSSSSCT--TTCCBCSSCBCCCCCS-SEECCSSCCCCE
T ss_pred CCCCCCccCCCCccccCcccCCCCCCC--CeeecCCCCceeecCC-CCEeCCCCceee
Confidence 35666653 3678894345564 5899999999999999 996 45564
No 187
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=79.32 E-value=0.77 Score=34.73 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.4
Q ss_pred CCCcCCCCceeEeccCCCCchhhh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
++.+.+|+.-.|+|.+|.|||||.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHH
T ss_pred EEEEeCCCEEEEECCCCCCHHHHH
Confidence 444567999999999999999985
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.27 E-value=0.9 Score=34.66 Aligned_cols=20 Identities=35% Similarity=0.252 Sum_probs=16.8
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
...-+|.|..|+|||++|--
T Consensus 55 ~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 34578999999999999854
No 189
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.25 E-value=0.71 Score=34.15 Aligned_cols=18 Identities=50% Similarity=0.680 Sum_probs=15.7
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
.--+|+|..|+|||++|-
T Consensus 30 ~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 457899999999999984
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=79.21 E-value=0.97 Score=31.66 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.2
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+...++.+.+++|..+.|||||.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHH
Confidence 34556888999999999999975
No 191
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=78.99 E-value=1.1 Score=36.17 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.7
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.++.-.+|+|..++|||++|+..+.+
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 46777889999999999999999998765
No 192
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=78.75 E-value=0.83 Score=31.43 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=16.5
Q ss_pred CceeEeccCCCCchhhhHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~ 118 (124)
-+.+++|+.+.|||+|.--.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l 41 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQL 41 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 47789999999999986443
No 193
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.63 E-value=0.9 Score=34.64 Aligned_cols=21 Identities=48% Similarity=0.509 Sum_probs=17.7
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+.--+|+|.+|+|||++|--
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 456788999999999999854
No 194
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=78.53 E-value=1.1 Score=34.24 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=17.0
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++.--+++|..|+|||++|-
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 3445556777999999999985
No 195
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.52 E-value=1.1 Score=35.58 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.5
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.++.+++-.+|+|..|.|||+|+.-...+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999876654
No 196
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=78.42 E-value=1.1 Score=33.30 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=20.7
Q ss_pred CCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+.-|.+++|..++|||||. .+|++++
T Consensus 20 ~~l~I~lvG~~g~GKSSli-n~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATG-NSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHH-HHHHTSC
T ss_pred CceEEEEECCCCCcHHHHH-HHHhCCC
Confidence 3457889999999999985 7777654
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=78.35 E-value=0.97 Score=34.50 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=16.4
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+.--+|+|..|+|||++|-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567899999999999985
No 198
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=78.34 E-value=0.85 Score=31.82 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=16.5
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
.-|.+|+|+.+.|||+|.--
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~ 39 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHR 39 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHH
Confidence 34778999999999998743
No 199
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=78.28 E-value=0.93 Score=35.88 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=17.5
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
.--+|.|.+|.|||+| +|||
T Consensus 26 gl~vi~G~NGaGKT~i-leAI 45 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI-FEAV 45 (371)
T ss_dssp EEEEEEECTTSSHHHH-HHHH
T ss_pred CeEEEECCCCCCHHHH-HHHH
Confidence 4678999999999998 7877
No 200
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=78.22 E-value=0.67 Score=34.67 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 33568899999999999999984
No 201
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=78.13 E-value=0.88 Score=31.68 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=15.9
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
-+.+++|+.++|||+|.--
T Consensus 22 ~ki~vvG~~~vGKTsLi~~ 40 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVK 40 (187)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 3678999999999998643
No 202
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=78.03 E-value=0.9 Score=30.95 Aligned_cols=20 Identities=40% Similarity=0.755 Sum_probs=16.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
+.-+.+++|+.+.|||+|.-
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~ 36 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTI 36 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34577899999999999853
No 203
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.02 E-value=0.81 Score=33.29 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=15.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|..-.|+|..|.|||||+
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCEECCCEEEEECSCC----CHH
T ss_pred cccCCCCEEEEECCCCCCHHHHH
Confidence 33456788889999999999986
No 204
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=78.00 E-value=0.94 Score=33.45 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.0
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.++....|.|..|.||||++-
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 4467778899999999999973
No 205
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=77.82 E-value=0.93 Score=30.97 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.2
Q ss_pred CceeEeccCCCCchhhh
Q psy10055 99 SRELIIGDRQTGKTALA 115 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~ 115 (124)
-|.+++|+.+.|||||.
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999986
No 206
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=77.81 E-value=0.6 Score=35.26 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 33557899999999999999985
No 207
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.74 E-value=0.85 Score=35.21 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.7
Q ss_pred eeEeccCCCCchhhhH
Q psy10055 101 ELIIGDRQTGKTALAI 116 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~ 116 (124)
-+|+|..|+|||++|.
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999985
No 208
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=77.71 E-value=0.63 Score=34.89 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.2
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3558899999999999999984
No 209
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.69 E-value=0.91 Score=31.47 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=17.0
Q ss_pred CceeEeccCCCCchhhhHHHHHh
Q psy10055 99 SRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
=|.+++|+.+.|||+|. ..+++
T Consensus 24 ~ki~v~G~~~~GKSsli-~~l~~ 45 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFL-FRYAD 45 (191)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHH
T ss_pred eEEEEECCCCcCHHHHH-HHHhc
Confidence 46789999999999985 34443
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.68 E-value=1.1 Score=37.15 Aligned_cols=23 Identities=48% Similarity=0.725 Sum_probs=20.1
Q ss_pred CcCCCCceeEeccCCCCchhhhH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+..|+...|++|..|||||.+|-
T Consensus 211 g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHH
Confidence 46678889999999999999974
No 211
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.64 E-value=1.1 Score=37.11 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=20.1
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.+..++...|++|..|||||.+|-
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHH
Confidence 345668889999999999999974
No 212
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.53 E-value=1.2 Score=36.77 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.+..|+...|++|..|||||.+|-
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCCCceEEeCCCCCCHHHHHH
Confidence 356778889999999999999974
No 213
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=77.51 E-value=0.71 Score=35.15 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=15.2
Q ss_pred ceeEeccCCCCchhhhH
Q psy10055 100 RELIIGDRQTGKTALAI 116 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~ 116 (124)
.-+|+|..|+|||++|-
T Consensus 47 ~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp CEEEECCGGGCTTHHHH
T ss_pred eEEEECCCCccHHHHHH
Confidence 38899999999999985
No 214
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=77.38 E-value=0.73 Score=35.04 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-+|+|.+|.|||||.
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3568999999999999999984
No 215
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=77.32 E-value=1 Score=35.13 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=16.9
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
.--+|+|.+|.|||+| +|+|
T Consensus 24 ~~~~i~G~NGsGKS~l-leAi 43 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSL-LDAI 43 (339)
T ss_dssp EEEEEECCTTSSHHHH-HHHH
T ss_pred CeEEEECCCCCCHHHH-HHHH
Confidence 3557999999999998 6877
No 216
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.28 E-value=0.88 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.7
Q ss_pred eeEeccCCCCchhhhH
Q psy10055 101 ELIIGDRQTGKTALAI 116 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~ 116 (124)
-+|+|.+|+|||++|-
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999974
No 217
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=77.20 E-value=0.98 Score=31.13 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.2
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||||.-
T Consensus 48 ~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999999863
No 218
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=77.14 E-value=0.97 Score=31.90 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.3
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.++|||+|.-
T Consensus 24 ~ki~vvG~~~vGKSsLi~ 41 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAG 41 (195)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 367899999999999853
No 219
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=77.11 E-value=0.75 Score=35.04 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34568999999999999999985
No 220
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=77.07 E-value=0.68 Score=34.44 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.2
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3557899999999999999984
No 221
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=76.99 E-value=1 Score=32.28 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.7
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.++....|+|.+|.|||||+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35788889999999999997
No 222
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=76.99 E-value=0.76 Score=35.22 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3568999999999999999985
No 223
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.84 E-value=0.92 Score=34.44 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.8
Q ss_pred eeEeccCCCCchhhhH
Q psy10055 101 ELIIGDRQTGKTALAI 116 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~ 116 (124)
-+|+|..|+|||++|-
T Consensus 61 ~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTIL 76 (353)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8899999999999975
No 224
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.83 E-value=0.65 Score=34.42 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.0
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3557889999999999999984
No 225
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=76.82 E-value=0.99 Score=31.66 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=14.4
Q ss_pred ceeEeccCCCCchhhh
Q psy10055 100 RELIIGDRQTGKTALA 115 (124)
Q Consensus 100 r~li~g~~~~g~t~~~ 115 (124)
+.+++|+.+.|||||.
T Consensus 31 kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5689999999999985
No 226
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=76.80 E-value=1.5 Score=34.43 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=18.6
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++...||+|..|+|||++|-
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHH
Confidence 3456778999999999999985
No 227
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=76.77 E-value=1 Score=31.05 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=16.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
+.-+.+++|+.+.|||+|.-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~ 35 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIIN 35 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34577899999999999864
No 228
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.75 E-value=0.92 Score=34.89 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=16.9
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
+.--+|+|..|+|||++|-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45688999999999999853
No 229
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.70 E-value=0.98 Score=30.67 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=17.1
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
..-+.+++|+.+.|||+|.-
T Consensus 17 ~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILY 36 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 45688999999999999863
No 230
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=76.65 E-value=0.78 Score=35.14 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEEcCCCCcHHHHH
Confidence 33557899999999999999985
No 231
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=76.64 E-value=1.4 Score=32.11 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=18.7
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.-|.+++|+.+.|||||. .+|+.+
T Consensus 29 ~~~i~lvG~~g~GKStli-n~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATG-NSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHH-HHHHTS
T ss_pred ceEEEEECCCCCCHHHHH-HHHcCC
Confidence 347789999999999985 566553
No 232
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=76.55 E-value=0.79 Score=34.98 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999999984
No 233
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=76.45 E-value=1 Score=31.07 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.1
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||+|.-
T Consensus 21 ~~ki~v~G~~~~GKSsli~ 39 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIIN 39 (190)
T ss_dssp CEEEEEEECTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 4578899999999999853
No 234
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.37 E-value=1.3 Score=35.96 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=19.1
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++...||+|..|+|||++|.
T Consensus 60 ~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 60 KMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CCTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCeEEEECCCcCCHHHHHH
Confidence 4567789999999999999985
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.32 E-value=1.3 Score=36.70 Aligned_cols=23 Identities=48% Similarity=0.755 Sum_probs=19.6
Q ss_pred CcCCCCceeEeccCCCCchhhhH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+..++...|++|..|||||++|-
T Consensus 202 g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHH
Confidence 45667779999999999999984
No 236
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=76.31 E-value=0.97 Score=34.65 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.8
Q ss_pred ceeEeccCCCCchhhhHH
Q psy10055 100 RELIIGDRQTGKTALAID 117 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~ 117 (124)
--+|+|.+|+|||+++-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999999853
No 237
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=76.18 E-value=0.82 Score=34.79 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=19.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 33557899999999999999985
No 238
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=76.15 E-value=1.1 Score=31.22 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||+|.-
T Consensus 28 ~~ki~v~G~~~vGKSsli~ 46 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVV 46 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999863
No 239
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=76.05 E-value=1.1 Score=30.96 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.2
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~ 43 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLS 43 (193)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 367899999999999853
No 240
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.92 E-value=1.1 Score=33.52 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=16.1
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
...-+|.|..|+|||++|-
T Consensus 47 ~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp SEEEEEESCSSSSHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHH
Confidence 3457899999999999985
No 241
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=75.91 E-value=0.72 Score=35.31 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.2
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHH
Confidence 3557899999999999999985
No 242
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=75.88 E-value=1.1 Score=31.16 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.7
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-|.+++|+.+.|||+|.-
T Consensus 23 ~~ki~vvG~~~~GKSsli~ 41 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVC 41 (192)
T ss_dssp EEEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3467899999999999853
No 243
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=75.84 E-value=0.73 Score=34.71 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 33557899999999999999984
No 244
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=75.77 E-value=1 Score=34.48 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=15.3
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
.--+|.|.+|+|||++|-
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346899999999999984
No 245
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=75.75 E-value=0.74 Score=34.23 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.1
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3457899999999999999984
No 246
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=75.66 E-value=0.75 Score=34.93 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=19.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 33557899999999999999985
No 247
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=75.62 E-value=1.1 Score=30.97 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.4
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-|.+++|+.++|||+|.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~ 41 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLL 41 (194)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 467899999999999853
No 248
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=75.61 E-value=1.1 Score=31.34 Aligned_cols=19 Identities=42% Similarity=0.524 Sum_probs=15.8
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-|.+++|+.+.|||+|.-
T Consensus 24 ~~ki~vvG~~~~GKSsli~ 42 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAH 42 (201)
T ss_dssp EEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHH
Confidence 4467899999999999853
No 249
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=75.60 E-value=1.3 Score=35.36 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.4
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.+.--+|.|+.|+|||++|+..|
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 46778999999999999999865
No 250
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=75.52 E-value=1.2 Score=30.66 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.0
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
..-|.+++|+.+.|||+|.--.+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 34578899999999999975443
No 251
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=75.50 E-value=1.1 Score=30.94 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=15.4
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 22 ~ki~v~G~~~~GKSsli~ 39 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLL 39 (191)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 367899999999999863
No 252
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.32 E-value=1.4 Score=33.09 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.9
Q ss_pred CceeEeccCCCCchhhhHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~ 118 (124)
.-.+|.|.+|+|||+++-..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHH
Confidence 56789999999999998653
No 253
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=75.29 E-value=1 Score=36.37 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=23.7
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.++.-.+|+|..|+|||+||+....+
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45666777799999999999999987653
No 254
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.26 E-value=0.9 Score=34.61 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34568899999999999999985
No 255
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=75.25 E-value=1.2 Score=31.07 Aligned_cols=17 Identities=47% Similarity=0.690 Sum_probs=14.8
Q ss_pred ceeEeccCCCCchhhhH
Q psy10055 100 RELIIGDRQTGKTALAI 116 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~ 116 (124)
+.+++|+.+.|||+|.-
T Consensus 28 ki~vvG~~~~GKSsLi~ 44 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLME 44 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999853
No 256
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=75.24 E-value=1.4 Score=33.11 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.2
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
.-.+|.|.+|+|||+++....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 367899999999999986543
No 257
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=75.14 E-value=1.2 Score=30.96 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=16.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
..-+.+++|+.+.|||+|.-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~ 38 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVV 38 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHH
Confidence 35578899999999999864
No 258
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=75.04 E-value=1.2 Score=30.81 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=16.7
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
.-+.+++|+.+.|||+|.--
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~ 35 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQ 35 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 35788999999999999653
No 259
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=75.03 E-value=1.2 Score=30.70 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=15.5
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 21 ~ki~v~G~~~~GKSsli~ 38 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTY 38 (189)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 467899999999999854
No 260
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=74.89 E-value=1.2 Score=30.66 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=15.0
Q ss_pred ceeEeccCCCCchhhhH
Q psy10055 100 RELIIGDRQTGKTALAI 116 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~ 116 (124)
+.+++|+.+.|||+|.-
T Consensus 24 ki~vvG~~~~GKSsli~ 40 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999863
No 261
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=74.86 E-value=0.82 Score=34.68 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=19.5
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 33567899999999999999984
No 262
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=74.73 E-value=1.6 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=18.8
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.-+.+++|+.+.||||| +.++++.
T Consensus 39 ~~~I~vvG~~g~GKSSL-in~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSST-VNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHH-HHHHHTS
T ss_pred CeEEEEECCCCCCHHHH-HHHHhCC
Confidence 34778999999999998 5566653
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=74.64 E-value=1.5 Score=31.45 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.5
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
...+|+.-.|+|.+|.|||+|+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 3567888899999999999986
No 264
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=74.59 E-value=1.2 Score=33.35 Aligned_cols=17 Identities=35% Similarity=0.433 Sum_probs=15.2
Q ss_pred eeEeccCCCCchhhhHH
Q psy10055 101 ELIIGDRQTGKTALAID 117 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~ 117 (124)
-+|.|..|+|||++|--
T Consensus 49 ~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 88999999999999853
No 265
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=74.59 E-value=1.3 Score=30.35 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.0
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
..-+.+++|+.+.|||+|.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~ 36 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILK 36 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHH
Confidence 45688999999999999853
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=74.49 E-value=0.84 Score=35.26 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.2
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3557899999999999999985
No 267
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=74.42 E-value=1.3 Score=31.01 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||+|.-
T Consensus 28 ~~ki~v~G~~~~GKSsli~ 46 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLM 46 (199)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4577899999999999864
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=74.33 E-value=1.5 Score=31.16 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=17.5
Q ss_pred CCCCceeEeccCCCCchhhhH
Q psy10055 96 DPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~ 116 (124)
.++...+|+|..|.||||++-
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 357788899999999999874
No 269
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=74.28 E-value=0.84 Score=35.20 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.6
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||||.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 33557899999999999999985
No 270
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=74.26 E-value=1.2 Score=30.50 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.8
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||+|.-
T Consensus 21 ~~~i~v~G~~~~GKSsli~ 39 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILY 39 (181)
T ss_dssp CEEEEEEEETTSSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHH
Confidence 3467899999999999853
No 271
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=74.25 E-value=1.3 Score=34.90 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.4
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+.+|+..+|+|..|.|||+|+-
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHH
Confidence 345679999999999999999864
No 272
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=74.23 E-value=1.3 Score=31.17 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=15.5
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~ 43 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLH 43 (200)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 477899999999999853
No 273
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.19 E-value=0.86 Score=34.12 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.1
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3557899999999999999984
No 274
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=74.14 E-value=1.4 Score=34.12 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.7
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+..-+|+|..|+|||+||.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4677899999999999985
No 275
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=74.13 E-value=1.3 Score=30.59 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.8
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
-+.+++|+.+.|||+|.--
T Consensus 19 ~ki~v~G~~~~GKssli~~ 37 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMS 37 (194)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3678999999999998643
No 276
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=74.08 E-value=1.3 Score=32.38 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=16.1
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
-+.+++|+.++|||+|..-
T Consensus 38 ~kVvlvG~~~vGKSSLl~r 56 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANI 56 (211)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678999999999998743
No 277
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=73.89 E-value=1.3 Score=30.59 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.3
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 23 ~ki~v~G~~~~GKSsli~ 40 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467899999999999854
No 278
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=73.63 E-value=1.3 Score=30.91 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.9
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
.-+.+++|+.+.|||+|.--
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~ 48 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYK 48 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 55789999999999998643
No 279
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.58 E-value=1.6 Score=34.04 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=17.0
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++..-+|+|..|+|||++|-
T Consensus 71 ~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 35568899999999999985
No 280
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=73.47 E-value=1.4 Score=31.57 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=16.7
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
.-+.+++|+.++|||+|.--
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~ 46 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQV 46 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHH
Confidence 45788999999999998643
No 281
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=73.44 E-value=1.4 Score=31.51 Aligned_cols=19 Identities=42% Similarity=0.594 Sum_probs=16.0
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
-+.+++|+.++|||+|.--
T Consensus 29 ~ki~vvG~~~vGKSsLi~~ 47 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHV 47 (205)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4788999999999998643
No 282
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.42 E-value=1.7 Score=38.35 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=20.9
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+.+..++...+|+|..|+|||+||-
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHH
Confidence 3455678889999999999999974
No 283
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.42 E-value=1.5 Score=34.33 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=17.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++...+|+|..|+|||++|-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 46678999999999999985
No 284
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.36 E-value=1.4 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
..-+.+++|+.+.|||+|.--.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999975544
No 285
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.17 E-value=1.7 Score=30.04 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=15.7
Q ss_pred ceeEeccCCCCchhhhHHHH
Q psy10055 100 RELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~ 119 (124)
--+|+|.++.|||+|. ++|
T Consensus 28 ~~~i~G~NGsGKStll-~ai 46 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG-DAI 46 (182)
T ss_dssp EEEEEECTTSSHHHHH-HHH
T ss_pred cEEEECCCCCCHHHHH-HHH
Confidence 6789999999999984 444
No 286
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=73.15 E-value=1.4 Score=30.34 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.9
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
..-+.+++|+.+.|||+|.-
T Consensus 21 ~~~~i~v~G~~~~GKssli~ 40 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILY 40 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 45688999999999999853
No 287
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=73.09 E-value=1.3 Score=32.85 Aligned_cols=17 Identities=53% Similarity=0.519 Sum_probs=15.2
Q ss_pred eeEeccCCCCchhhhHH
Q psy10055 101 ELIIGDRQTGKTALAID 117 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~ 117 (124)
-+|+|..|+|||++|--
T Consensus 41 ~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIA 57 (319)
T ss_dssp EEEESSSSSSHHHHHHH
T ss_pred EEEECcCCcCHHHHHHH
Confidence 89999999999999853
No 288
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=73.05 E-value=1.4 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.4
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.-+.+++|+.+.|||+|.- .+++
T Consensus 23 ~~ki~~vG~~~vGKSsli~-~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLH-MLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHH-HHHH
T ss_pred ccEEEEECCCCCCHHHHHH-HHhc
Confidence 4588999999999999854 4443
No 289
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.04 E-value=1.4 Score=31.39 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.4
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 27 ~ki~lvG~~~vGKSsLi~ 44 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVR 44 (201)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 367899999999999854
No 290
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=73.01 E-value=1.4 Score=31.02 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.8
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
-+.+++|+.++|||+|.--
T Consensus 30 ~ki~vvG~~~vGKSsli~~ 48 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQR 48 (201)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 3678999999999998643
No 291
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=73.01 E-value=1.4 Score=31.35 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.5
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 35 ~ki~vvG~~~vGKSsli~ 52 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLM 52 (214)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred EEEEEECcCCCCHHHHHH
Confidence 467899999999999964
No 292
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.82 E-value=1.7 Score=35.40 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=18.3
Q ss_pred CCCCceeEeccCCCCchhhhH
Q psy10055 96 DPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~ 116 (124)
.++...||+|..|+|||++|-
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 456778999999999999985
No 293
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.60 E-value=1.4 Score=32.84 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=15.3
Q ss_pred eeEeccCCCCchhhhHH
Q psy10055 101 ELIIGDRQTGKTALAID 117 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~ 117 (124)
-+|+|..|+|||++|.-
T Consensus 45 ~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHC 61 (323)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 89999999999999853
No 294
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=72.57 E-value=1.5 Score=30.78 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=15.5
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-+.+++|+.+.|||+|.-
T Consensus 26 ~ki~vvG~~~~GKSsli~ 43 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLI 43 (201)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467899999999999863
No 295
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.55 E-value=1.5 Score=30.93 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.6
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.-+.+++|+.+.|||+|. ..+++
T Consensus 25 ~~ki~vvG~~~~GKSsli-~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLL-IVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHH-HHHHH
T ss_pred CcEEEEECcCCCCHHHHH-HHHhc
Confidence 347899999999999985 34433
No 296
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.42 E-value=1.7 Score=34.37 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.3
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++.-.||+|..|+|||++|-
T Consensus 147 ~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45678999999999999985
No 297
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.36 E-value=1.7 Score=36.63 Aligned_cols=24 Identities=46% Similarity=0.645 Sum_probs=20.6
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.+..++...|++|..|||||.+|-
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCCCceEeeCCCCCcHHHHHH
Confidence 356788899999999999999873
No 298
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=72.32 E-value=1.8 Score=33.65 Aligned_cols=20 Identities=45% Similarity=0.491 Sum_probs=17.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++..-+|.|..|+|||++|-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46678999999999999984
No 299
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=72.14 E-value=1.5 Score=30.84 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.9
Q ss_pred CceeEeccCCCCchhhhHHHHHh
Q psy10055 99 SRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-+.+++|+.+.|||+|. ..+++
T Consensus 26 ~ki~vvG~~~~GKSsLi-~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFL-YRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHH-HHHHC
T ss_pred EEEEEECcCCCCHHHHH-HHHhc
Confidence 36789999999999985 34443
No 300
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=72.08 E-value=1.7 Score=34.59 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCCceeEeccCCCCchhhhHHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
.+.--+|.|++|.|||++|+..+-
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 477799999999999999998763
No 301
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.92 E-value=1.6 Score=30.44 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=16.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
..-+.+++|+.+.|||+|.-
T Consensus 19 ~~~~i~v~G~~~~GKSsli~ 38 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLV 38 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHH
Confidence 35578999999999999864
No 302
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.92 E-value=0.93 Score=34.64 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=16.3
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+..-+|+|..|+|||++|-
T Consensus 46 ~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp TCCEEEESCCCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3467899999999999985
No 303
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=71.88 E-value=1.5 Score=30.89 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.0
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||+|.-
T Consensus 25 ~~ki~lvG~~~vGKSsLi~ 43 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLH 43 (198)
T ss_dssp CEEEEEEEETTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4478899999999999853
No 304
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=71.70 E-value=1.5 Score=30.65 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=15.0
Q ss_pred CceeEeccCCCCchhhh
Q psy10055 99 SRELIIGDRQTGKTALA 115 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~ 115 (124)
-|.+++|+.+.|||+|.
T Consensus 34 ~ki~vvG~~~~GKSsli 50 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLL 50 (199)
T ss_dssp EEEEEECCTTSCCTTTT
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47789999999999985
No 305
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=71.60 E-value=1.6 Score=30.82 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=16.5
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.=|.+++|+.+.|||+|.-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~ 48 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLI 48 (204)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHH
Confidence 5578999999999999874
No 306
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=71.35 E-value=1.3 Score=34.51 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.1
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-+|+|.+|.|||||.
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHH
Confidence 3557899999999999999984
No 307
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.14 E-value=1.5 Score=35.65 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.6
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
.--+|+|..|+|||++|-
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 457899999999999984
No 308
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=70.68 E-value=1.1 Score=31.05 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=5.0
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||+|.-
T Consensus 20 ~~~i~v~G~~~~GKssli~ 38 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALIS 38 (208)
T ss_dssp EEEEEEC------------
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3477899999999999853
No 309
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.67 E-value=1.6 Score=33.68 Aligned_cols=19 Identities=42% Similarity=0.475 Sum_probs=16.3
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
....+|.|..|+|||++|-
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEESCTTSCHHHHHH
T ss_pred CCcEEEECCCCchHHHHHH
Confidence 4567899999999999984
No 310
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.55 E-value=1.6 Score=35.77 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=15.9
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
..-+|+|..|+|||++|--
T Consensus 202 ~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CEEEEESCTTTTTHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 3458999999999999853
No 311
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=70.39 E-value=2.6 Score=35.41 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=18.2
Q ss_pred CcCCCCceeEeccCCCCchhhhH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++..+..-+|+|..|+|||+||-
T Consensus 60 g~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 60 GARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SCCCCSEEEEECSSSSSHHHHHH
T ss_pred cCCCCceEEEECCCCCCHHHHHH
Confidence 34445558999999999999974
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=70.15 E-value=2.3 Score=30.08 Aligned_cols=20 Identities=35% Similarity=0.207 Sum_probs=17.0
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++...+|.|..|.|||++|-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678899999999999874
No 313
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=70.01 E-value=1.8 Score=31.07 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-+.+++|+.+.|||+|.-
T Consensus 29 ~~kI~vvG~~~vGKSsLin 47 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMN 47 (228)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3577899999999999853
No 314
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.85 E-value=2.1 Score=31.41 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.8
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.+|+.-.|+|.+|.|||||.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46888999999999999985
No 315
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=69.79 E-value=3.9 Score=31.66 Aligned_cols=18 Identities=22% Similarity=0.853 Sum_probs=15.9
Q ss_pred eeeeCCCCceEEecCCCee
Q psy10055 40 ICISTDSGPICECRNLDFE 58 (124)
Q Consensus 40 ~C~~~~~~y~C~C~~tg~~ 58 (124)
.|+..+.+|+|.||. ||.
T Consensus 317 lCl~~~~~~~C~C~~-g~~ 334 (349)
T 3v64_C 317 LCLPSGQNYTCACPT-GFR 334 (349)
T ss_dssp EEECCTTSCEEECCT-TEE
T ss_pred EeecCCCCCeeECCC-CCc
Confidence 688888899999999 985
No 316
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.55 E-value=2.1 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.6
Q ss_pred ceeEeccCCCCchhhhHHHHH
Q psy10055 100 RELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~ 120 (124)
--+|+|.+|.|||||. |+|-
T Consensus 25 ~~~i~G~NGaGKTTll-~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF-EAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHH-HHHH
Confidence 5779999999999985 6663
No 317
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.29 E-value=2.3 Score=35.48 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.2
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.+..++...|++|.-|||||.+|-
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHH
Confidence 345668889999999999999984
No 318
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=69.14 E-value=2.6 Score=35.12 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=18.3
Q ss_pred CcCCCCceeEeccCCCCchhhhH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
++..+...+|+|..|+|||++|-
T Consensus 45 g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 45 GARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHH
Confidence 34445668999999999999974
No 319
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=69.04 E-value=1.5 Score=38.88 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=35.1
Q ss_pred ccccccccccc---CCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccCc
Q psy10055 16 YCHYSVENSVL---DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVE 66 (124)
Q Consensus 16 ~c~~~v~~~~~---d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~~ 66 (124)
.|..+|.+++. ..| +..|...|.|+.. .|.|.+ ||.|..|+...
T Consensus 521 ~C~~gw~g~dc~i~~~C--p~~C~ghG~C~~G----~C~Cd~-G~~G~~C~~~~ 567 (725)
T 2e26_A 521 DKQQTWAIDNVYIGDGC--LDMCSGHGRCVQG----SCVCDE-QWGGLYCDEPE 567 (725)
T ss_dssp CTTCCEEEEEEEEESCS--SGGGGGSEEEETT----EEEECT-TEESTTSCEES
T ss_pred ccCCCcccccccccCCC--CcccCCCcEECCC----CEeeCC-CccCCCcCccC
Confidence 36777777643 457 5789999999986 899999 99999998653
No 320
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=68.83 E-value=1.6 Score=33.79 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=16.3
Q ss_pred CCceeE--eccCCCCchhhhHHH
Q psy10055 98 PSRELI--IGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li--~g~~~~g~t~~~~~~ 118 (124)
+...+| +|.+|+|||+++-..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHH
Confidence 345667 799999999998643
No 321
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=68.80 E-value=2.7 Score=31.23 Aligned_cols=25 Identities=12% Similarity=0.486 Sum_probs=19.4
Q ss_pred CCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
..-+.+++|+.+.||||| +.+++.+
T Consensus 25 ~~~~i~vvG~~~~GKSSL-ln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSV-LENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHH-HHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHH-HHHHHCC
Confidence 355889999999999997 4555543
No 322
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=68.51 E-value=1.7 Score=34.08 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.4
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+++-+|+|.+|.|||||+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVN 188 (365)
T ss_dssp CEEEEEECCTTSHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHH
Confidence 7899999999999999874
No 323
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=68.40 E-value=1.9 Score=35.47 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=15.5
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
.--+|+|..|+|||++|-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 346899999999999985
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=68.17 E-value=2.2 Score=30.22 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=17.1
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++....|.|-.|.||||++-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46778899999999999873
No 325
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.09 E-value=3 Score=34.49 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.9
Q ss_pred CcCCCCceeEeccCCCCchhhhHHH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~ 118 (124)
++.+|+.-+|+|.+|.|||+|+.-.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 5667999999999999999998763
No 326
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=67.62 E-value=1.6 Score=33.35 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+. |+.-.|+|.+|.|||||.
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHH
T ss_pred EEEC-CEEEEEECCCCCCHHHHH
Confidence 3456 889999999999999985
No 327
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=67.01 E-value=1.6 Score=37.49 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.6
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+.-.+|+|.+|+|||+|+.|
T Consensus 240 ~g~~~lffGlSGtGKTTLs~d 260 (540)
T 2olr_A 240 KGDVAVFFGLSGTGKTTLSTD 260 (540)
T ss_dssp TSCEEEEECSTTSSHHHHHCC
T ss_pred CCCEEEEEccCCCCHHHHhcC
Confidence 467789999999999999876
No 328
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=67.00 E-value=2.9 Score=29.59 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=18.4
Q ss_pred CCceeEeccCCCCchhhhHHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
..+.+++|+.++|||+|+.-.+-
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999999999866543
No 329
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=66.91 E-value=1.2 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+...|+|.+|.|||||.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHH
T ss_pred EEEcCCCEEEEECCCCchHHHHH
Confidence 34568999999999999999986
No 330
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=66.59 E-value=2.9 Score=34.80 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=17.1
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++.--||+|..|+|||++|-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 45568999999999999984
No 331
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.26 E-value=3 Score=34.48 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
..--+|.|..|+|||++|.
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999999985
No 332
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=66.10 E-value=2.6 Score=34.87 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCcCCCCceeEeccCCCCchhhhHHHH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+.++.+|+.-+|+|..|+|||+|+.-..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFV 302 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4467889999999999999999987644
No 333
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=65.87 E-value=3.2 Score=32.27 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.6
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..+|+..+|+|.+|.||||++-
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHH
Confidence 4468888999999999999863
No 334
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=65.75 E-value=3.7 Score=30.27 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.2
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
..+-++.++.|+|||.+|+-.+..
T Consensus 108 ~~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 108 DKRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp TSEEEEEESSSTTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 456889999999999999887754
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=65.69 E-value=2.9 Score=29.45 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+...+|.|..|.||||+|-
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999999974
No 336
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=65.47 E-value=1.8 Score=37.07 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=17.4
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
.-.+|+|.+|+|||+|+.|
T Consensus 236 ~~~~ffGlSGtGKTTLs~d 254 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLSTD 254 (532)
T ss_dssp SEEEEECCTTSSHHHHHCC
T ss_pred eEEEEEecCCCCHHHHhhC
Confidence 6789999999999999976
No 337
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=65.44 E-value=1.9 Score=32.40 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.3
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+ +.-.|+|.+|.|||||.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFL 41 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHH
T ss_pred ECC-EEEEEECCCCCCHHHHH
Confidence 456 88889999999999985
No 338
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=64.95 E-value=2.7 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.512 Sum_probs=21.9
Q ss_pred CCCCCCCCC------eeeeCCCCceEEecCCCeecccccc
Q psy10055 31 EHDPCKHGG------ICISTDSGPICECRNLDFEGIYCEK 64 (124)
Q Consensus 31 ~~nPC~ngG------~C~~~~~~y~C~C~~tg~~G~~Ce~ 64 (124)
.+=+|.+.| +|.. ....|.|.+ +|+|+.|+.
T Consensus 110 ~~C~C~~~Gs~~~~~~Cd~--~tG~C~C~~-g~~G~~Cd~ 146 (162)
T 1klo_A 110 KACACNPYGTVQQQSSCNP--VTGQCQCLP-HVSGRDCGT 146 (162)
T ss_dssp EECCCCTTTBGGGCCCCCT--TTCCCCBCT-TEESTTCCE
T ss_pred eeccCCCCCccCCCCCCCC--CCCEeECCC-CCcCCCCCC
Confidence 344576655 5643 245899999 999999974
No 339
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=64.89 E-value=2.5 Score=32.07 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=17.2
Q ss_pred CCCC-ceeEeccCCCCchhhhHH
Q psy10055 96 DPPS-RELIIGDRQTGKTALAID 117 (124)
Q Consensus 96 vp~~-r~li~g~~~~g~t~~~~~ 117 (124)
.|.. ..+|+|.-++|||++|+-
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHH
Confidence 4533 388999999999999853
No 340
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=64.80 E-value=3.7 Score=36.69 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.0
Q ss_pred cCCCcCCCCceeEeccCCCCchhhhH
Q psy10055 91 DGAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 91 ~~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
...+..|+.-.|++|..|+|||.||-
T Consensus 231 ~~~g~~~p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 231 KAIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp TSCCCCCCCEEEEECCTTSCHHHHHH
T ss_pred hhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 44566788889999999999999984
No 341
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=63.83 E-value=3.2 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=15.6
Q ss_pred eeEeccCCCCchhhhHHHHHh
Q psy10055 101 ELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+++|+.+.||||| +++++.
T Consensus 40 I~vvG~~g~GKSTL-ln~L~~ 59 (361)
T 2qag_A 40 LMVVGESGLGKSTL-INSLFL 59 (361)
T ss_dssp EEECCCTTSCHHHH-HHHHTT
T ss_pred EEEEcCCCCCHHHH-HHHHhC
Confidence 37999999999998 455443
No 342
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=67.32 E-value=1.5 Score=30.69 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=15.7
Q ss_pred CCceeEeccCCCCchhhh
Q psy10055 98 PSRELIIGDRQTGKTALA 115 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~ 115 (124)
.-+.+++|+.+.|||+|.
T Consensus 30 ~~ki~v~G~~~~GKSsli 47 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLL 47 (204)
Confidence 457789999999999986
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=62.87 E-value=3.9 Score=30.36 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.8
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.++....|.|..|.|||+|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 45778999999999999987
No 344
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=62.85 E-value=3.5 Score=32.16 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.2
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
..+|....|+|.+|.|||||+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 345788889999999999997
No 345
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=62.79 E-value=2.8 Score=35.16 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=16.4
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+..-+|+|..|+|||++|-
T Consensus 41 ~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TCEEEEECCSSSSHHHHHH
T ss_pred CCeeEeecCchHHHHHHHH
Confidence 4567899999999999984
No 346
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.79 E-value=4.2 Score=36.31 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=21.1
Q ss_pred CCCcCCCCceeEeccCCCCchhhhH
Q psy10055 92 GAGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 92 ~~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..++.++...|++|..|+|||.+|-
T Consensus 505 ~~g~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 505 KFGMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp SSCCCCCSCCEEESSTTSSHHHHHH
T ss_pred hcCCCCCceEEEecCCCCCchHHHH
Confidence 4456788899999999999998873
No 347
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=62.75 E-value=3.1 Score=36.67 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhhH
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
.++.++..-+|+|..|+|||++|-
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lak 529 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHH
Confidence 345567788999999999999974
No 348
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=62.15 E-value=4.5 Score=30.07 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.2
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
....+++...|.|||++|+.+.+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR 51 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR 51 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345667788899999999988764
No 349
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=62.14 E-value=3.4 Score=34.56 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=17.7
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++.--+|+|..|+|||++|-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57778999999999999985
No 350
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=62.04 E-value=3.9 Score=33.82 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=19.2
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
...+|++-+|+|.+|.|||||+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHH
T ss_pred EeCCCCEEEEECCCCCCHHHHH
Confidence 3457999999999999999985
No 351
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=61.49 E-value=2.8 Score=35.22 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.2
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-+|+|.+|.||||+.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3457999999999999999985
No 352
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.23 E-value=3 Score=35.95 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.9
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
..-.+|+|..|+|||++|-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3347899999999999984
No 353
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=60.97 E-value=4.3 Score=32.75 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhhH
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~ 116 (124)
+..++...+|+|..|+|||+++-
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHH
Confidence 34567888999999999999874
No 354
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=60.87 E-value=2.9 Score=31.62 Aligned_cols=18 Identities=33% Similarity=0.171 Sum_probs=13.2
Q ss_pred ceeEeccCCCCchhhhHH
Q psy10055 100 RELIIGDRQTGKTALAID 117 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~ 117 (124)
--++.|..|+|||++|--
T Consensus 50 ~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp EEEECSSTTSSHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHH
Confidence 345556699999999853
No 355
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=60.83 E-value=2.6 Score=35.42 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.3
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.||||+.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIA 386 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3557999999999999999985
No 356
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=60.77 E-value=2.6 Score=33.39 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=17.4
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+...+|+|..|||||+++--
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 466778999999999998753
No 357
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=60.56 E-value=3.9 Score=32.92 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.5
Q ss_pred CceeEeccCCCCchhhhHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~ 118 (124)
...+|+|..++|||+||+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35789999999999999875
No 358
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=60.50 E-value=3.9 Score=30.86 Aligned_cols=36 Identities=22% Similarity=0.728 Sum_probs=24.6
Q ss_pred cCCCCCC--CCCCCCCeeeeCCCCceEEecCCCee----cccccc
Q psy10055 26 LDPCEEH--DPCKHGGICISTDSGPICECRNLDFE----GIYCEK 64 (124)
Q Consensus 26 ~d~C~~~--nPC~ngG~C~~~~~~y~C~C~~tg~~----G~~Ce~ 64 (124)
.|+|+.. ..|.+ .|.++.+.|.|.|+. ||. ++.|..
T Consensus 2 ~~eC~~~~~~~C~~--~C~~~~~~~~C~C~~-G~~l~~d~~sC~p 43 (283)
T 3f1s_B 2 KNECHPERTDGCQH--FCLPGQESYTCSCAQ-GYRLGEDHKQCVP 43 (283)
T ss_dssp -CCCCSSCSSSCSS--BCCCCTTSCCCBCCT-TEEECTTSSCEEE
T ss_pred CCccCCCCCCCCCC--EeeCCCCCeEecCCC-CcccCCCCCcccc
Confidence 4677322 35654 588889999999999 885 456654
No 359
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.43 E-value=4.4 Score=32.54 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.7
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..+|...+|+|.+|.||||++-
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHH
Confidence 4568889999999999999863
No 360
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=60.16 E-value=2.9 Score=35.67 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.7
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+.-.+|+|.+|+|||+|+.|
T Consensus 212 ~g~~~~ffGlSGtGKTTLs~d 232 (524)
T 1ii2_A 212 QGDVTVFFGLSGTGKTTLSAD 232 (524)
T ss_dssp TCCEEEEECCTTSSHHHHHCC
T ss_pred CCCEEEEEccCCcchhhhhhc
Confidence 467899999999999999876
No 361
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=60.10 E-value=2.8 Score=35.29 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.4
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.||||+.
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3568999999999999999985
No 362
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=60.03 E-value=3.4 Score=31.99 Aligned_cols=20 Identities=25% Similarity=0.120 Sum_probs=16.7
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
++--+|.|..|+|||++|.-
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHH
Confidence 44578999999999999864
No 363
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=59.89 E-value=3.3 Score=31.92 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=13.4
Q ss_pred eEeccCCCCchhhhH
Q psy10055 102 LIIGDRQTGKTALAI 116 (124)
Q Consensus 102 li~g~~~~g~t~~~~ 116 (124)
+++|+++.|||||.-
T Consensus 22 ~lvG~nG~GKSTLl~ 36 (301)
T 2qnr_A 22 MVVGESGLGKSTLIN 36 (301)
T ss_dssp EEEEETTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 799999999999854
No 364
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=59.88 E-value=3.8 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=18.5
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+++..+|+|.+|.||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 457888999999999999985
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=59.88 E-value=4.1 Score=34.39 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=17.5
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
.+..-+|+|..|+|||++|-
T Consensus 59 ~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 46788999999999999984
No 366
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=59.77 E-value=4.8 Score=33.79 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.5
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|++-.|+|.+|.|||||.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLl 64 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAV 64 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHH
Confidence 3568999999999999999985
No 367
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=59.67 E-value=3.6 Score=30.49 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.8
Q ss_pred CCceeEeccC---------CCCchhhhHHH
Q psy10055 98 PSRELIIGDR---------QTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~---------~~g~t~~~~~~ 118 (124)
.-+.+++|+. ++|||+|.--.
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l 48 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRF 48 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHH
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHH
Confidence 3477899999 99999986543
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=59.57 E-value=3.7 Score=30.09 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=18.6
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.-+.+|+|+.+.|||||. ..++.+
T Consensus 22 ~~~I~lvG~~g~GKStl~-n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAG-NSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHTS
T ss_pred ceEEEEECCCCCCHHHHH-HHHhCC
Confidence 457889999999999984 555543
No 369
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=59.04 E-value=3.1 Score=35.61 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.3
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+...+|+|.+++|||+|++|
T Consensus 224 ~g~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 224 EGDVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp TCCEEEEEECTTSCHHHHTCB
T ss_pred CCcEEEEEccccCChhhHhhc
Confidence 466788899999999999987
No 370
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.87 E-value=4.8 Score=38.89 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.3
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.+|.|..++|||+||+..+.+
T Consensus 378 GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 378 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46888999999999999999999998876
No 371
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.42 E-value=4.9 Score=38.80 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.9
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.+|.|+.++|||+||+..+.+
T Consensus 727 GGl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 727 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 36888999999999999999999998765
No 372
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=58.41 E-value=4.5 Score=28.71 Aligned_cols=21 Identities=33% Similarity=0.129 Sum_probs=17.4
Q ss_pred CCCCceeEeccCCCCchhhhH
Q psy10055 96 DPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~ 116 (124)
.++....|.|..|.|||+++-
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346677899999999999974
No 373
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=58.27 E-value=4.9 Score=31.21 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=17.3
Q ss_pred ceeEeccCCCCchhhhHHHHHh
Q psy10055 100 RELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-.+|+|..+||||.+|. +|.+
T Consensus 106 ~~~l~GppgtGKt~~a~-ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE-AIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHh
Confidence 37899999999999998 4443
No 374
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=57.96 E-value=3.6 Score=34.80 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.0
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.||||+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 457999999999999999985
No 375
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=57.72 E-value=2.6 Score=36.05 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.7
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 346899999999999999996
No 376
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=57.66 E-value=6.2 Score=29.67 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+++-++++|+-+.|||+.++..+.|
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35778889999999999999998876
No 377
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=57.63 E-value=3.8 Score=35.20 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.5
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
+...+|+|..|+|||++|--
T Consensus 207 ~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHH
Confidence 44568999999999999753
No 378
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=57.36 E-value=5.1 Score=33.23 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
++...+++|..|+|||++|-
T Consensus 49 ~~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 46679999999999999974
No 379
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}
Probab=57.20 E-value=9.7 Score=32.81 Aligned_cols=41 Identities=22% Similarity=0.573 Sum_probs=30.3
Q ss_pred cccCCCCC--CCCCCCCCeeeeCCC-CceEEecCCCeec--cccccC
Q psy10055 24 SVLDPCEE--HDPCKHGGICISTDS-GPICECRNLDFEG--IYCEKV 65 (124)
Q Consensus 24 ~~~d~C~~--~nPC~ngG~C~~~~~-~y~C~C~~tg~~G--~~Ce~~ 65 (124)
...+.|.. .+||..+..|+.... .|.|.|+. ||.| ..|..+
T Consensus 16 ~~~~~c~~~~~~~c~~~a~C~~~~~~~~~c~C~~-G~ag~G~~c~~D 61 (551)
T 3fby_A 16 SAQRFCPDGSPSECHEHADCVLERDGSRSCVCAV-GWAGNGILCGRD 61 (551)
T ss_dssp CBCCBCTTSSBCCCCTTEEEEECTTSCEEEEECT-TEESSSSSCEEC
T ss_pred cccccCCCCCCCCCCCCCeeEeCCCCCEecCCCC-CCCCCCcccCcc
Confidence 34566732 369999999997754 57899999 9984 567655
No 380
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=57.01 E-value=5.3 Score=34.19 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.4
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLl 134 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAV 134 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCChHHHHH
Confidence 3567999999999999999985
No 381
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=56.91 E-value=2.2 Score=30.09 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.3
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.-+.+++|+.+.|||+|. ..++++
T Consensus 29 ~~~i~v~G~~~~GKSsli-n~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAI-NVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHH-HHHTTC
T ss_pred CCEEEEEcCCCCCHHHHH-HHHhCC
Confidence 457899999999999984 444443
No 382
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.81 E-value=5.7 Score=29.23 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.3
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+....|+|..|.|||+|+--
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 466778899999999998653
No 383
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=56.67 E-value=6.1 Score=29.91 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=18.4
Q ss_pred CceeEeccCCCCchhhhHHHHHhc
Q psy10055 99 SRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
-+.+++|..++||||| +.++...
T Consensus 100 ~~v~~vG~~~vGKSsl-in~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTI-INKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHH-HHHHHTT
T ss_pred hheEEeCCCCCCHHHH-HHHHhcc
Confidence 4789999999999998 5665543
No 384
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=56.54 E-value=4.4 Score=30.06 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=18.2
Q ss_pred CCceeEeccCCCCchhhhHHHHHhc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.-+.+++|+.+.|||||. .+++++
T Consensus 36 ~~~I~lvG~~g~GKSSLi-n~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTV-NSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHH-HHHHTS
T ss_pred CcEEEEECCCCCCHHHHH-HHHhCC
Confidence 346789999999999984 455543
No 385
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=56.41 E-value=11 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.627 Sum_probs=17.9
Q ss_pred eeeeCCC--CceEEecCCCee----cccccc
Q psy10055 40 ICISTDS--GPICECRNLDFE----GIYCEK 64 (124)
Q Consensus 40 ~C~~~~~--~y~C~C~~tg~~----G~~Ce~ 64 (124)
.|+..+. +|+|.||. ||. |+.|..
T Consensus 280 ~C~~~~~~~~~~C~C~~-g~~l~~d~~~c~~ 309 (318)
T 3sov_A 280 LCLMSPVKPFYQCACPT-GVKLLENGKTCKD 309 (318)
T ss_dssp EEEECSSTTSEEEECST-TCCBCTTSSCBCC
T ss_pred EEecCCCCCCeEEECCC-CCEECCCCCCCCC
Confidence 5887765 69999999 884 566654
No 386
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=56.40 E-value=4 Score=34.70 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=15.3
Q ss_pred ceeEeccCCCCchhhhH
Q psy10055 100 RELIIGDRQTGKTALAI 116 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~ 116 (124)
.-||+|+.|+|||.+|-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 58999999999999984
No 387
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=56.32 E-value=3.5 Score=34.65 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.9
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.||||+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHH
Confidence 457999999999999999985
No 388
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=56.30 E-value=5.4 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.7
Q ss_pred CCCceeEeccCCCCchhhhHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~ 118 (124)
++...+|+|..|.|||+++.-.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4778889999999999988654
No 389
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=56.21 E-value=3.7 Score=35.18 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.7
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLl 399 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFV 399 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 457999999999999999985
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=56.07 E-value=5.4 Score=29.43 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=17.9
Q ss_pred CCCCceeEeccCCCCchhhhH
Q psy10055 96 DPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~ 116 (124)
..+-+.+|.|..|.||||+|-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 356688999999999999974
No 391
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=55.82 E-value=5.3 Score=30.23 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.2
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+....|+|..|.|||+++-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 7889999999999999863
No 392
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=55.80 E-value=5.6 Score=33.69 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.4
Q ss_pred eeEeccCCCCchhhhHHHHHh
Q psy10055 101 ELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 101 ~li~g~~~~g~t~~~~~~~~~ 121 (124)
-+|.|.-|||||++++..|..
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999887754
No 393
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=55.73 E-value=4.5 Score=31.55 Aligned_cols=25 Identities=12% Similarity=0.486 Sum_probs=19.0
Q ss_pred CCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
...+.+++|+.+.||||| +++++.+
T Consensus 30 ~~~~I~vvG~~~~GKSSL-ln~L~g~ 54 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSV-LENFVGR 54 (353)
T ss_dssp CCCEEEEECBTTSSHHHH-HHTTTTS
T ss_pred CCCeEEEECCCCCCHHHH-HHHHhCC
Confidence 345889999999999998 4555543
No 394
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.27 E-value=5.4 Score=31.00 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.2
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
+++..+|+|.+|.||||++-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 46788899999999999864
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=55.17 E-value=5 Score=30.81 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.7
Q ss_pred CCCceeEeccCCCCchhhh
Q psy10055 97 PPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~ 115 (124)
.+....|.|..|.|||||+
T Consensus 79 ~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4677889999999999997
No 396
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=55.14 E-value=3.8 Score=33.18 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.8
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLl 71 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLI 71 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHH
Confidence 3457889999999999999984
No 397
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=55.00 E-value=2.8 Score=34.34 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=17.2
Q ss_pred CceeEeccCCCCchhhhHHHHHhc
Q psy10055 99 SRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
-+.+|+|+.+.||||| +++++++
T Consensus 35 ~kI~IvG~~~vGKSTL-in~L~~~ 57 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSF-MNALVGQ 57 (423)
T ss_dssp EEEEEECSCSTTTTTT-TTSSCC-
T ss_pred EEEEEECCCCCCHHHH-HHHHHcC
Confidence 3578999999999998 4555443
No 398
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=54.94 E-value=6.6 Score=30.02 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=20.1
Q ss_pred CCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
+-+.+++|..++||||| ++++++++
T Consensus 120 ~~~v~~vG~~nvGKSsl-iN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTL-INRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHH-HHHHHTSC
T ss_pred CceEEEEecCCCchHHH-HHHHhcCc
Confidence 44688999999999998 77777653
No 399
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=54.87 E-value=4.9 Score=29.96 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.2
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
.-+.+++|+.+.|||+|.--.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~ 175 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISY 175 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred eeEEEEECCCCCChHHHHHHH
Confidence 457889999999999997443
No 400
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=54.83 E-value=4 Score=34.25 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.7
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|++-.|+|.+|.|||+|+
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLl 329 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFV 329 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 457999999999999999985
No 401
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=54.58 E-value=4.9 Score=31.21 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=14.6
Q ss_pred ceeEeccCCCCchhhh
Q psy10055 100 RELIIGDRQTGKTALA 115 (124)
Q Consensus 100 r~li~g~~~~g~t~~~ 115 (124)
+.+|+|+.++|||+|.
T Consensus 167 kI~ivG~~~vGKSsLl 182 (329)
T 3o47_A 167 RILMVGLDAAGKTTIL 182 (329)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred eEEEECCCCccHHHHH
Confidence 6899999999999985
No 402
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=54.55 E-value=3.9 Score=34.49 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.0
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.||||++
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457999999999999999986
No 403
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=54.35 E-value=5.9 Score=27.76 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.0
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
+-..+|.|-.+.|||++|-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4467899999999999974
No 404
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=54.28 E-value=6.3 Score=38.78 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.4
Q ss_pred CCcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.++.+++-.+|.|+.++|||+||+..+.+
T Consensus 378 GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 378 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46888999999999999999999998876
No 405
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=54.20 E-value=3.2 Score=24.77 Aligned_cols=40 Identities=5% Similarity=-0.103 Sum_probs=26.2
Q ss_pred ccccccCccceeeccceeeccc-----cccceeeEeccCCCcCCC
Q psy10055 59 GIYCEKVEISVVRAISMRVRGS-----RKKLRLIECEDGAGMDPP 98 (124)
Q Consensus 59 G~~Ce~~~~~~~~~~~~~~r~~-----~~~~~~~~C~~~~~mvp~ 98 (124)
|++|+.+.+++...|+.....+ ++....+.|..-.+|.+.
T Consensus 1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~ 45 (55)
T 3u7u_G 1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD 45 (55)
T ss_dssp --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEEST
T ss_pred CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCC
Confidence 6778888888877777776666 344556888887777553
No 406
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=54.10 E-value=6.6 Score=28.51 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.8
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.+|.-..|.|..|.||||++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHH
T ss_pred CCceEEEEECCCCCCHHHHH
Confidence 35667789999999999986
No 407
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=54.09 E-value=4.8 Score=29.76 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=17.6
Q ss_pred CCCceeEeccCCCCchhhhHH
Q psy10055 97 PPSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~ 117 (124)
.+...+|+|-.|.|||++|--
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 466788999999999999753
No 408
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=53.80 E-value=2.4 Score=33.40 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=17.8
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.++ +-+|+|.+|.|||+|.
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHHH
Confidence 34567 9999999999999984
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.49 E-value=6.3 Score=28.04 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.9
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
.+...+|.|-.|.|||+++-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45667899999999999875
No 410
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=53.22 E-value=4.8 Score=35.37 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=15.8
Q ss_pred CceeEeccCCCCchhhhHH
Q psy10055 99 SRELIIGDRQTGKTALAID 117 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~ 117 (124)
.--+|+|..|+|||++|--
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 3468999999999999854
No 411
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=53.01 E-value=3.7 Score=32.94 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHH
Confidence 457888999999999999984
No 412
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=53.01 E-value=4.3 Score=32.57 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHH
Confidence 457889999999999999984
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=53.01 E-value=6.8 Score=33.19 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=18.7
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
..+|...+|+|.+|.||||++-
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHH
Confidence 4468889999999999999864
No 414
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=52.47 E-value=6.6 Score=32.19 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.1
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
....+|.|..|+|||+||....
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 4457899999999999997653
No 415
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.35 E-value=5.7 Score=32.80 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=19.8
Q ss_pred CcCCCCc--eeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSR--ELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r--~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+.+|.. .+|+|.+|.||||| +.+|..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTL-ln~L~G 64 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTL-MDTLFN 64 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHH-HHHHHT
T ss_pred EecCCCeeEEEEECCCCCCHHHH-HHHHhC
Confidence 3456777 88999999999998 455543
No 416
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=52.23 E-value=4.5 Score=32.49 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred ECCCCEEEEECCCCchHHHHH
Confidence 457888999999999999984
No 417
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=52.20 E-value=6.7 Score=30.97 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.2
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
..+++..+|.|..|.||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 346889999999999999985
No 418
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=52.12 E-value=7.1 Score=38.41 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=25.7
Q ss_pred CcCCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
++.+++-.+|.|+.++|||+||+....|
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~ 755 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 6888999999999999999999998776
No 419
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=52.07 E-value=6.6 Score=28.43 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.7
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
.+.+.+|.|-.|.|||++|-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578899999999999874
No 420
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.00 E-value=5.9 Score=30.21 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.9
Q ss_pred CCceeEeccCCCCchhhhHH
Q psy10055 98 PSRELIIGDRQTGKTALAID 117 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~ 117 (124)
+...+|.|-.|.||||+|--
T Consensus 33 ~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 55678999999999999854
No 421
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=51.87 E-value=5.8 Score=31.25 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.4
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
+|...+|+|.+|.||||++-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 57888999999999999853
No 422
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=51.42 E-value=4.7 Score=32.50 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.5
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHH
Confidence 457889999999999999984
No 423
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=51.31 E-value=7.1 Score=31.57 Aligned_cols=20 Identities=35% Similarity=0.270 Sum_probs=16.3
Q ss_pred ceeEeccCCCCchhhhHHHH
Q psy10055 100 RELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~ 119 (124)
--+|.|..|+|||+++.-.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 66889999999999886443
No 424
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=50.42 E-value=5 Score=32.32 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHH
Confidence 457888999999999999984
No 425
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=50.38 E-value=6.5 Score=30.27 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.6
Q ss_pred CCCceeEeccCCCCchhhh
Q psy10055 97 PPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~ 115 (124)
.+....|.|..|.|||++|
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4666789999999999998
No 426
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=49.94 E-value=8.6 Score=26.96 Aligned_cols=21 Identities=38% Similarity=0.354 Sum_probs=16.6
Q ss_pred CceeEeccCCCCchhhhHHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~ 119 (124)
...+|+|..+.|||+|+--.+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 357799999999999875443
No 427
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=49.88 E-value=6.6 Score=30.57 Aligned_cols=21 Identities=19% Similarity=0.640 Sum_probs=17.1
Q ss_pred ceeEeccCCCCchhhhHHHHHh
Q psy10055 100 RELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+.+++|+.+.||||| +.+++.
T Consensus 36 ~I~vvG~~~sGKSSL-ln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSV-LESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHH-HHHHHT
T ss_pred EEEEECCCCCcHHHH-HHHHhC
Confidence 889999999999998 444443
No 428
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=49.69 E-value=6 Score=34.09 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.2
Q ss_pred ceeEeccCCCCchhhhH
Q psy10055 100 RELIIGDRQTGKTALAI 116 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~ 116 (124)
.-+|+|..|+|||++|-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999985
No 429
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=49.55 E-value=7.3 Score=32.18 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.0
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.....|.|-.|+|||+||....
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 3556799999999999998544
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=49.51 E-value=5.5 Score=33.54 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|+.-.|+|.+|.|||+|+
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl 311 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFA 311 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHH
T ss_pred ceECCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999999985
No 431
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=49.50 E-value=5.2 Score=32.44 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.8
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHH
Confidence 457899999999999999985
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=49.47 E-value=8.7 Score=27.84 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=17.1
Q ss_pred CCCceeEeccCCCCchhhhH
Q psy10055 97 PPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~ 116 (124)
.+.+..|.|..|.|||+++-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 56678899999999999873
No 433
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=49.35 E-value=3.5 Score=32.94 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.9
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|+.-.|+|.+|.|||||.
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHH
T ss_pred EEcCCCEEEEECCCCccHHHHH
Confidence 3457889999999999999985
No 434
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=49.32 E-value=8.1 Score=29.68 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.0
Q ss_pred CCCCceeEeccCCCCchhhhHHHHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
.++ --+|+|.+|.|||+| +|+|-
T Consensus 23 ~~g-~~~i~G~NGsGKS~l-l~ai~ 45 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNI-IDAIK 45 (322)
T ss_dssp CSS-EEEEECCTTTCSTHH-HHHHH
T ss_pred CCC-cEEEECCCCCcHHHH-HHHHH
Confidence 345 788999999999998 55553
No 435
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=49.26 E-value=8.8 Score=31.12 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.9
Q ss_pred CCCc--eeEeccCCCCchhhhH
Q psy10055 97 PPSR--ELIIGDRQTGKTALAI 116 (124)
Q Consensus 97 p~~r--~li~g~~~~g~t~~~~ 116 (124)
++++ .+|+|..|.|||+++-
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHH
Confidence 4556 8899999999999983
No 436
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=49.14 E-value=4.6 Score=36.93 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.8
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-.|+|.+|.|||||.
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLL 478 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLM 478 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999999984
No 437
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=49.10 E-value=4.7 Score=32.44 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHH
Confidence 457888999999999999984
No 438
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose octasulphate, hormone/growth factor complex; HET: SO4; 1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB: 1lr8_A* 1lr9_A
Probab=48.69 E-value=17 Score=22.29 Aligned_cols=27 Identities=30% Similarity=0.759 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCeeeeCC-CCceEEecC
Q psy10055 27 DPCEEHDPCKHGGICISTD-SGPICECRN 54 (124)
Q Consensus 27 d~C~~~nPC~ngG~C~~~~-~~y~C~C~~ 54 (124)
++| ...+|..|..|+... +...|.|+.
T Consensus 2 ~~C-~~~~C~~g~~C~~~~~~~~~C~C~~ 29 (74)
T 1lr7_A 2 ETC-ENVDCGPGKKCRMNKKNKPRCVCAP 29 (74)
T ss_dssp CCS-TTCCCCTTEEEEECTTSCEEEEECC
T ss_pred CCC-CCCcCcCCCEEeECCCCCeeecCCC
Confidence 679 699999999999754 456899865
No 439
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=47.90 E-value=10 Score=29.66 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.1
Q ss_pred CCCCceeEeccCCCCchhhhHHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~ 118 (124)
.++...+|.|..|.|||+++.-.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45778889999999999998654
No 440
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=47.68 E-value=6.9 Score=31.97 Aligned_cols=18 Identities=22% Similarity=0.711 Sum_probs=14.5
Q ss_pred eEeccCCCCchhhhHHHHH
Q psy10055 102 LIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 102 li~g~~~~g~t~~~~~~~~ 120 (124)
+|+|++|.|||||. .+++
T Consensus 35 ~lvG~sGaGKSTLl-n~L~ 52 (418)
T 2qag_C 35 MVVGESGLGKSTLI-NSLF 52 (418)
T ss_dssp EEECCTTSSHHHHH-HHHT
T ss_pred EEECCCCCcHHHHH-HHHh
Confidence 79999999999984 4444
No 441
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=47.58 E-value=6.2 Score=27.35 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=20.8
Q ss_pred CCCceeEeccCCCCchhhhHHHHHh
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+.+-++.+..|+|||.+++-.++.
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 3567889999999999999877764
No 442
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.37 E-value=6.9 Score=33.54 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=15.1
Q ss_pred ceeEeccCCCCchhhhH
Q psy10055 100 RELIIGDRQTGKTALAI 116 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~ 116 (124)
.-+|.|..|+|||++|-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46899999999999985
No 443
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=47.25 E-value=7.5 Score=32.35 Aligned_cols=28 Identities=32% Similarity=0.771 Sum_probs=23.1
Q ss_pred CCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 37 HGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 37 ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
++..|....+.+.|.|+. +++|.+|+.-
T Consensus 302 Has~C~~~~g~~~C~C~~-~ttG~~CE~C 329 (426)
T 3zyj_B 302 HATVCVYDNSKLTCECEH-NTTGPDCGKC 329 (426)
T ss_dssp SCSCEEEETTEEEECCCT-TEESSSSCEE
T ss_pred chhhcCCCCCCceeeCCC-CCcCCCcccc
Confidence 346788777779999999 9999999863
No 444
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=47.12 E-value=6.1 Score=32.11 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred ECCCCEEEEEcCCCchHHHHH
Confidence 457888999999999999984
No 445
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=46.95 E-value=6.5 Score=35.56 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.4
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+-..|-|-+|-||||||.|||-.
T Consensus 24 ~~l~v~tG~SGSGKSsLafdtl~a 47 (916)
T 3pih_A 24 NRLVVITGVSGSGKSSLAMDTIYA 47 (916)
T ss_dssp TSEEEEEESTTSSSHHHHTTTHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 455668899999999999999975
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=46.86 E-value=10 Score=32.50 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.6
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
..+|+.-.|+|.+|.|||||.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLL 120 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTAL 120 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHH
T ss_pred CCCCCEEEEECCCCChHHHHH
Confidence 457999999999999999984
No 447
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=46.71 E-value=8.7 Score=30.55 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=17.9
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
..++...+|.|..|.||||+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 346778899999999999985
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=46.34 E-value=5.9 Score=36.83 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.1
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
..+|++.+|+|..|.|||||+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHH
T ss_pred ECCCCEEEEECCCCChHHHHH
Confidence 458999999999999999986
No 449
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=45.89 E-value=5.6 Score=33.91 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=18.3
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.+|+.-.|+|.+|.|||||.
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEeeCCCCHHHHH
Confidence 46899999999999999997
No 450
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=45.80 E-value=9.9 Score=29.61 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=18.0
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+-.-.+|.|-.|+||||+++..-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHH
Confidence 34456677999999999998764
No 451
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=45.68 E-value=13 Score=31.30 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.5
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.+|+.-.|+|.+|.||||+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLl 42 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVL 42 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 45888899999999999985
No 452
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=45.14 E-value=9.3 Score=29.31 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=16.4
Q ss_pred CCCceeEeccCCCCchhhh
Q psy10055 97 PPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~ 115 (124)
.++...++|.+|.|||||.
T Consensus 164 ~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3677889999999999985
No 453
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=45.13 E-value=9.5 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.2
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.+++..+|+|.+|.||||+.
T Consensus 169 ~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999974
No 454
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=45.10 E-value=8.8 Score=28.16 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.5
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-..+|.|..+.|||++|-
T Consensus 23 ~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 457899999999999984
No 455
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=44.95 E-value=3.6 Score=32.86 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+|+.-.|+|.+|.|||||.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFM 48 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHH
Confidence 457888999999999999984
No 456
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=44.68 E-value=15 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.007 Sum_probs=19.3
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+..-++.+..|+|||.+++-.+++
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~ 61 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAE 61 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHH
Confidence 456778899999999987776665
No 457
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=44.67 E-value=8.5 Score=28.78 Aligned_cols=25 Identities=16% Similarity=0.530 Sum_probs=19.4
Q ss_pred CCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
...+.+++|+.+.|||||. ++++.+
T Consensus 23 ~~~~I~vvG~~~~GKSTll-n~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVL-ENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHH-HHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHH-HHHHCC
Confidence 4557899999999999874 566553
No 458
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=44.40 E-value=11 Score=27.65 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=18.4
Q ss_pred cCCCCceeEeccCCCCchhhhH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~ 116 (124)
|..+....|.|..|.||||++-
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHH
Confidence 4467788899999999999863
No 459
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=44.02 E-value=12 Score=31.52 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=20.7
Q ss_pred CCCceeEeccCCCCchhhhHHHHHhcc
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIINQK 123 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~q~ 123 (124)
..-+.+++|..++||||| +.++++++
T Consensus 64 ~~~~V~vvG~~n~GKSTL-IN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSF-IQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHH-HHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHhCCc
Confidence 356889999999999988 56676654
No 460
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=43.69 E-value=12 Score=29.93 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred cCCCCceeEeccCCCCchhhhHHHH
Q psy10055 95 MDPPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+.++.--+|+|.+|.|||+|. ++|
T Consensus 23 ~~~~~~~~i~G~nG~GKstll-~ai 46 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMM-DAI 46 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHH-HHH
T ss_pred ecCCCEEEEECCCCCCHHHHH-HHH
Confidence 335677899999999999973 444
No 461
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=43.69 E-value=8.9 Score=30.25 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=14.3
Q ss_pred ceeEeccCCCCchhhh
Q psy10055 100 RELIIGDRQTGKTALA 115 (124)
Q Consensus 100 r~li~g~~~~g~t~~~ 115 (124)
-..|+|..|.||||++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999997
No 462
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=43.60 E-value=11 Score=30.35 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=18.6
Q ss_pred CCCceeEeccCCCCchhhhHHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
+++.-.|+|.++.|||||. .+|+
T Consensus 214 ~G~~~~lvG~sG~GKSTLl-n~L~ 236 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLL-NALL 236 (358)
T ss_dssp TTSEEEEECCTTSSHHHHH-HHHH
T ss_pred CCCEEEEECCCCccHHHHH-HHHh
Confidence 4778899999999999975 4444
No 463
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=43.39 E-value=12 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.1
Q ss_pred CCceeEeccCCCCchhhhHHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
...-+|+|.-|+|||++++.-|.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~ 44 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIA 44 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHH
Confidence 34568999999999999988764
No 464
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=43.12 E-value=4 Score=37.32 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCcCCCCceeEeccCCCCchhhh
Q psy10055 93 AGMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 93 ~~mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+.+|++-.|+|.+|.|||||.
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLL 716 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLI 716 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 33567999999999999999985
No 465
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=42.35 E-value=8.2 Score=35.37 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+-..|-|-+|-||||||.|||-.
T Consensus 46 ~~lvv~tG~SGSGKSSLafdtlya 69 (993)
T 2ygr_A 46 DALIVFTGLSGSGKSSLAFDTIFA 69 (993)
T ss_dssp SSEEEEEESTTSSHHHHHTTTHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 455668899999999999999975
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=42.15 E-value=14 Score=28.80 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.7
Q ss_pred CCCCceeEeccCCCCchhhhHHH
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~ 118 (124)
.++...+|.|..|.|||+++.-.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHH
Confidence 35677889999999999988643
No 467
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=41.84 E-value=11 Score=28.94 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCCceeEeccCCCCchhhhHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~ 118 (124)
++...+++|..|.|||+++.-.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5677889999999999998654
No 468
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.80 E-value=10 Score=33.30 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.6
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
..-+|+|..|+|||++|-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999999984
No 469
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=41.71 E-value=13 Score=27.82 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=18.5
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
.+....+.+-.|+|||++|+..-
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHH
Confidence 35667788999999999998753
No 470
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=41.21 E-value=8.7 Score=35.12 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.4
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+-..|-|-+|-||||||.|||-.
T Consensus 44 ~~lvv~tG~SGSGKSSLafdtlya 67 (972)
T 2r6f_A 44 GKLVVLTGLSGSGKSSLAFDTIYA 67 (972)
T ss_dssp TSEEEEEESTTSSHHHHHTTTHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 455668899999999999999975
No 471
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=41.16 E-value=11 Score=30.39 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=17.4
Q ss_pred CceeEeccCCCCchhhhHHHHHh
Q psy10055 99 SRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
-+.+|+|+.+.||||| +..++.
T Consensus 181 ~kvaivG~~gvGKSTL-ln~l~g 202 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTL-FNAILN 202 (439)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHT
T ss_pred ceEEEECCCCCCHHHH-HHHHhC
Confidence 4778999999999998 455554
No 472
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=41.04 E-value=14 Score=30.20 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.3
Q ss_pred CCceeEeccCCCCchhhhHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~ 119 (124)
+...+|+|..|+|||+++.-..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999987654
No 473
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=40.91 E-value=9.3 Score=29.56 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=15.3
Q ss_pred ceeEeccCCCCchhhhHH
Q psy10055 100 RELIIGDRQTGKTALAID 117 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~ 117 (124)
--+|+|..|+|||++|.-
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 457899999999998864
No 474
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=40.71 E-value=18 Score=29.51 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=19.4
Q ss_pred CCCCceeEeccCCCCchhhhHHHHHh
Q psy10055 96 DPPSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
..+.+..|+|..+.||||| +.++.+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL-~n~Ltg 44 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTF-FNVLTN 44 (396)
T ss_dssp SSCCCEEEECCSSSSHHHH-HHHHHC
T ss_pred cCCCEEEEECCCCCCHHHH-HHHHHC
Confidence 3467889999999999988 445544
No 475
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=40.43 E-value=4.8 Score=31.60 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.0
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
+.+++.-.|+|.++.|||||.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLl 190 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLL 190 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345889999999999999874
No 476
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=40.22 E-value=18 Score=26.02 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=17.6
Q ss_pred CCceeEeccCCCCchhhhHHHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~ 120 (124)
++--++.|..|.|||++..-.++
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 66678999999999976554443
No 477
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=39.83 E-value=11 Score=31.06 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=30.7
Q ss_pred cccccccc---CCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccc--cccCc
Q psy10055 19 YSVENSVL---DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIY--CEKVE 66 (124)
Q Consensus 19 ~~v~~~~~---d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~--Ce~~~ 66 (124)
..|.++.+ ..| ++.|...|.|+.. .|.|-+ ||.|.. |....
T Consensus 181 ~~WAlD~vyIg~~C--p~~CsGhG~C~~g----~C~Cd~-G~~g~d~~C~~~~ 226 (387)
T 2ddu_A 181 PPFGLDGVYISEPC--PSYCSGHGDCISG----VCFCDL-GYTAAQGTCVSNT 226 (387)
T ss_dssp CCCBCCCCEEESCC--GGGGGGSEEEETT----EEEECT-TEEEETTEEEESS
T ss_pred cceeEeeEEecccC--ccccCCCceecCC----eEEecC-CcccCCCcccccc
Confidence 35666533 568 7889999999763 899999 999974 86553
No 478
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=39.80 E-value=14 Score=29.29 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=17.3
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
..-.+++|..|.|||++. ..+|.
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~ 75 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAY 75 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHH
Confidence 445689999999999974 44444
No 479
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=39.80 E-value=12 Score=29.27 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=18.2
Q ss_pred cCCCCceeEeccCCCCchhhh
Q psy10055 95 MDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 95 mvp~~r~li~g~~~~g~t~~~ 115 (124)
..++....|+|..+.||||+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl 72 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTI 72 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHH
Confidence 456888999999999999975
No 480
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=39.46 E-value=18 Score=30.52 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=27.2
Q ss_pred CCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 32 HDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 32 ~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
=.||++++.-....+.-.|.|++ ++.|..|+..
T Consensus 451 C~pC~~~~~~~~~gt~C~c~C~~-g~~G~~c~~~ 483 (537)
T 3ojy_B 451 CAPCQGNGVPVLKGSRCDCICPV-GSQGLACEVS 483 (537)
T ss_dssp SCCCSTTCEEEEETTEEEEECCT-TEETGGGCEE
T ss_pred CCCCCcCCEEecCCCceeccCCC-CcccccccCC
Confidence 34999999887766667788999 9999999764
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=39.25 E-value=14 Score=31.61 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.5
Q ss_pred CCCceeEeccCCCCchhhh
Q psy10055 97 PPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~ 115 (124)
.++.-.|+|.+|.|||+|+
T Consensus 377 ~GEiv~iiG~NGsGKSTLl 395 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLI 395 (608)
T ss_dssp TTCEEEEESCTTSSHHHHH
T ss_pred cceEEEEECCCCCcHHHHH
Confidence 3577889999999999986
No 482
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=38.62 E-value=12 Score=30.80 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=15.8
Q ss_pred CCceeEeccCCCCchhhhH
Q psy10055 98 PSRELIIGDRQTGKTALAI 116 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~ 116 (124)
.-|.+++|+.++|||||.-
T Consensus 41 ~~kV~lvG~~~vGKSSLl~ 59 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLK 59 (535)
T ss_dssp EEEEEEESSSCSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3467899999999999863
No 483
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=37.70 E-value=15 Score=31.29 Aligned_cols=38 Identities=29% Similarity=0.690 Sum_probs=27.4
Q ss_pred cCCCCCCCCCCCCCeeeeCCCCceEEecCCCeeccccccC
Q psy10055 26 LDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65 (124)
Q Consensus 26 ~d~C~~~nPC~ngG~C~~~~~~y~C~C~~tg~~G~~Ce~~ 65 (124)
.+.| +-.||++++.-...++.=.|.|++ ||.|..|+..
T Consensus 464 ~~~c-~c~pC~~~g~~~~~gt~C~c~C~~-G~~G~~C~~~ 501 (554)
T 3ojy_A 464 FNAC-RCGPCFNNGVPILEGTSCRCQCRL-GSLGAACEQT 501 (554)
T ss_dssp TCGG-GSCCCTTTCCEEEETTEEEECCCS-SCCSSSCC--
T ss_pred cccc-cccccCCCCEEcCCCCcccccCCC-CCCCCCcccC
Confidence 3556 456999999875555555678999 9999999754
No 484
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=37.60 E-value=15 Score=28.08 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.8
Q ss_pred CCceeEeccCCCCchhhh
Q psy10055 98 PSRELIIGDRQTGKTALA 115 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~ 115 (124)
+....|+|.++.|||||.
T Consensus 169 geiv~l~G~sG~GKSTll 186 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLL 186 (301)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 677889999999999874
No 485
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=37.33 E-value=18 Score=27.55 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCceeEeccCCCCchhhhHHHHHhc
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTIINQ 122 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~~~q 122 (124)
.++-++++|+=+.|||+.++..+.|.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 47889999998999999999998773
No 486
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=37.24 E-value=24 Score=24.25 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.8
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+..-++.+..|.|||.+++=.+++
T Consensus 40 ~~~~lv~apTGsGKT~~~~~~~~~ 63 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLIPLLE 63 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHHHHHH
T ss_pred CCCEEEECCCCCchHHHHHHHHHH
Confidence 455678888999999888766664
No 487
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=37.23 E-value=15 Score=30.98 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=16.9
Q ss_pred ceeEeccCCCCchhhhHHHHH
Q psy10055 100 RELIIGDRQTGKTALAIDTII 120 (124)
Q Consensus 100 r~li~g~~~~g~t~~~~~~~~ 120 (124)
.-+|.|.-|||||+++...|.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 346889999999999877653
No 488
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=36.91 E-value=13 Score=29.72 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=16.8
Q ss_pred CCCceeEeccCCCCchhhhHHHH
Q psy10055 97 PPSRELIIGDRQTGKTALAIDTI 119 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~~~~~ 119 (124)
++ --.|+|.+|.|||+| +++|
T Consensus 26 ~g-~~~i~G~nG~GKttl-l~ai 46 (359)
T 2o5v_A 26 EG-VTGIYGENGAGKTNL-LEAA 46 (359)
T ss_dssp SE-EEEEECCTTSSHHHH-HHHH
T ss_pred CC-eEEEECCCCCChhHH-HHHH
Confidence 44 778999999999997 4554
No 489
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=36.75 E-value=11 Score=35.00 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=19.5
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
.+.+|++..|+|..|.|||||.
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3558999999999999999986
No 490
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=36.68 E-value=19 Score=26.65 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=18.7
Q ss_pred CceeEeccCCCCchhhhHHHHHh
Q psy10055 99 SRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
.+-++.+..|.|||.+|+-.+..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 129 RRRILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCcHHHHHHHHHH
Confidence 45678999999999999776653
No 491
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=36.61 E-value=13 Score=34.55 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.4
Q ss_pred CcCCCCceeEeccCCCCchhhh
Q psy10055 94 GMDPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 94 ~mvp~~r~li~g~~~~g~t~~~ 115 (124)
...+|++-.|+|.+|.|||+|+
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~ 1076 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVV 1076 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3467999999999999999986
No 492
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=35.56 E-value=15 Score=29.11 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=17.0
Q ss_pred CCCCceeEeccCCCCchhhh
Q psy10055 96 DPPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 96 vp~~r~li~g~~~~g~t~~~ 115 (124)
.++...+|+|..|.||||+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45667899999999999986
No 493
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=35.40 E-value=23 Score=26.86 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.5
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+..-++.+..|.|||.+++=.|++
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~ 87 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLS 87 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHH
Confidence 366788899999999998776664
No 494
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=35.14 E-value=16 Score=26.77 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.9
Q ss_pred CCCceeEeccCCCCchhhh
Q psy10055 97 PPSRELIIGDRQTGKTALA 115 (124)
Q Consensus 97 p~~r~li~g~~~~g~t~~~ 115 (124)
.+....|.|--|.||||+|
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3556788999999999987
No 495
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=35.10 E-value=15 Score=27.79 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.2
Q ss_pred CceeEeccCCCCchhhhH
Q psy10055 99 SRELIIGDRQTGKTALAI 116 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~ 116 (124)
-..+|.|..|.|||++|-
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 357889999999999973
No 496
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=35.08 E-value=18 Score=30.61 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.6
Q ss_pred CceeEeccCCCCchhhhHHH
Q psy10055 99 SRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 99 ~r~li~g~~~~g~t~~~~~~ 118 (124)
.--+|.|..|||||+++.-.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l 224 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAV 224 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 34568999999999986543
No 497
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=34.96 E-value=13 Score=33.36 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.9
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
++-..|-|-+|-||||||.|||-.
T Consensus 36 ~~l~viTGvSGSGKSSLafdtl~a 59 (842)
T 2vf7_A 36 DALVVFTGVSGSGKSSLAFGTLYA 59 (842)
T ss_dssp SSEEEEESSTTSSHHHHHTTTHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 445567788999999999999965
No 498
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=34.93 E-value=25 Score=26.38 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
+..-++.+..|.|||.+++-.++.
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~~~ 67 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTMLT 67 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 366788899999999988777765
No 499
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=34.89 E-value=22 Score=28.08 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.3
Q ss_pred CCceeEeccCCCCchhhhHHHHHh
Q psy10055 98 PSRELIIGDRQTGKTALAIDTIIN 121 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~~~~ 121 (124)
..+-++.++.|.|||.+|+-+|..
T Consensus 108 ~~~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 108 DKRGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHHHHHH
Confidence 456789999999999999988764
No 500
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=34.67 E-value=17 Score=27.99 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=17.9
Q ss_pred CCceeEeccCCCCchhhhHHH
Q psy10055 98 PSRELIIGDRQTGKTALAIDT 118 (124)
Q Consensus 98 ~~r~li~g~~~~g~t~~~~~~ 118 (124)
+...+++|..|.|||+++.-.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 667789999999999988754
Done!