RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10055
(124 letters)
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 69.2 bits (170), Expect = 3e-15
Identities = 22/24 (91%), Positives = 23/24 (95%)
Query: 100 RELIIGDRQTGKTALAIDTIINQK 123
RELIIGDRQTGKTALAID IINQ+
Sbjct: 164 RELIIGDRQTGKTALAIDAIINQR 187
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 69.2 bits (170), Expect = 3e-15
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 100 RELIIGDRQTGKTALAIDTIINQKR 124
RELIIGDRQTGKT++AIDTIINQKR
Sbjct: 164 RELIIGDRQTGKTSIAIDTIINQKR 188
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 68.9 bits (169), Expect = 5e-15
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 100 RELIIGDRQTGKTALAIDTIINQKR 124
RELIIGDRQTGKTA+A DTI+NQ+
Sbjct: 165 RELIIGDRQTGKTAVATDTILNQQG 189
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 68.5 bits (168), Expect = 7e-15
Identities = 23/24 (95%), Positives = 24/24 (100%)
Query: 100 RELIIGDRQTGKTALAIDTIINQK 123
RELIIGDRQTGKTA+AIDTIINQK
Sbjct: 177 RELIIGDRQTGKTAIAIDTIINQK 200
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 68.5 bits (168), Expect = 7e-15
Identities = 22/24 (91%), Positives = 23/24 (95%)
Query: 100 RELIIGDRQTGKTALAIDTIINQK 123
RELIIGDRQTGKT +AIDTIINQK
Sbjct: 164 RELIIGDRQTGKTTIAIDTIINQK 187
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 49.1 bits (116), Expect = 4e-08
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 11 CSDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEISVV 70
D E C +GG+C D +C+C F G C + + +
Sbjct: 174 LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYI 233
Score = 39.8 bits (92), Expect = 9e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
C+E D C + G+C+ G C+C F G C
Sbjct: 1018 TTCQE-DSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 1054
Score = 34.8 bits (79), Expect = 0.005
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
+PCK+ G+C + +C+C + G CE+
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER 656
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 43.1 bits (101), Expect = 5e-06
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEIS 68
C+ D C + G+C+ G C+C F G C +
Sbjct: 186 TTCQ-EDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 226
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 35.0 bits (80), Expect = 0.003
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 26 LDPCEEHDPCKHGGICISTDSGPI-CECRNLDFEGIYCEKVEISVVRAISMRVRGSRK 82
++PC + PC+H GIC+ C+C + G C I +R + +
Sbjct: 2 VNPCCYY-PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI------PEIWTWLRTTLR 52
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 34.3 bits (79), Expect = 0.005
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65
PC PC H G C + G C C +EG CE
Sbjct: 6 SPCISQ-PCLHNGSCQDSIWGYTCTCSP-GYEGSNCELA 42
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 33.0 bits (76), Expect = 0.010
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 26 LDPCE-EHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
+D C +PC+H G CI+T C+C + G CE
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCE 42
Score = 29.9 bits (68), Expect = 0.10
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
D C PC H G C+ + CEC F G C+
Sbjct: 84 DECASS-PCLHNGRCLDKINEFQCECP-TGFTGHLCQ 118
Score = 29.9 bits (68), Expect = 0.11
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
+ C + PC++ C+ C C +EG++CE
Sbjct: 46 NECVSN-PCQNDATCLDQIGEFQCICMP-GYEGVHCE 80
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 33.6 bits (76), Expect = 0.011
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGP-ICECRNLDFEGIYCEK 64
+PC + PC++ G C+ST C+C F G C
Sbjct: 2 NPCCSN-PCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 31.6 bits (72), Expect = 0.039
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 7 CTALCSDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
+ + + D CE PC++ G C C C FEG CE
Sbjct: 23 REVFEDSDKTNEFWNKYKDGDQCET-SPCQNQGKCKDGLGEYTCTCLE-GFEGKNCEL 78
Score = 27.8 bits (62), Expect = 0.84
Identities = 4/37 (10%), Positives = 7/37 (18%), Gaps = 1/37 (2%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
P PC + S + +
Sbjct: 120 IPTGP-YPCGKQTLERRKRSVAQATSSSGEAPDSITW 155
Score = 25.9 bits (57), Expect = 3.9
Identities = 7/43 (16%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 22 ENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
E C D C + +C C + K
Sbjct: 77 ELFTRKLCSL-DNGDCDQFCHEEQNSVVCSCAR-GYTLADNGK 117
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 31.5 bits (71), Expect = 0.059
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 2 SENRNCTALCSDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIY 61
RN + C E + C+HGG+C+ + C C+ + G
Sbjct: 397 RLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK---CLCKK-GYLGPQ 452
Query: 62 CEKVE 66
CE+V+
Sbjct: 453 CEQVD 457
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 30.4 bits (69), Expect = 0.078
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 26 LDPCEEHDPCKHGGICISTDSGP-ICECRNLDFEGIYCE 63
L+ C H PC +GG C +T C C + G CE
Sbjct: 131 LNYCGTHQPCLNGGTCSNTGPDKYQCSCPE-GYSGPNCE 168
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 30.3 bits (69), Expect = 0.087
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 7 CTALCSDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65
+ + + D CE PC++ G C C C FEG CE
Sbjct: 23 REVFEDSDKTNEFWNKYKDGDQCE-TSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELF 79
Score = 26.5 bits (59), Expect = 1.9
Identities = 7/43 (16%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 22 ENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
E C D C + +C C + K
Sbjct: 77 ELFTRKLCSL-DNGDCDQFCHEEQNSVVCSCAR-GYTLADNGK 117
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 30.4 bits (69), Expect = 0.091
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
D CE + PC +GG+C + C C+ FEG CE
Sbjct: 49 DQCEPN-PCLNGGLCKDDINSYECWCQV-GFEGKNCEL 84
Score = 24.6 bits (54), Expect = 7.5
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 29 CEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
C + DS +C C + +K
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTT-GYRLAPDQK 122
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.092
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 30/58 (51%)
Query: 63 EKVEISVVRAISMRVRGSRKKLRLIECEDGAGMDPPSRELIIGDRQTGKTALAID-TI 119
EK + +++ S L+L +D A P ALAI T+
Sbjct: 18 EKQALK-------KLQAS---LKLYA-DDSA----P--------------ALAIKATM 46
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 30.1 bits (68), Expect = 0.095
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
+ CE PCK+GGIC + CEC +F G C+
Sbjct: 98 NECEVE-PCKNGGICTDLVANYSCECP-GEFMGRNCQ 132
Score = 28.1 bits (63), Expect = 0.46
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 27 DPCEEHDPCKHGGICIS--TDSGPICECRNLDFEGIYCEK 64
D C+ + PC++GGIC+ D CEC + F C
Sbjct: 1 DICDPN-PCENGGICLPGLADGSFSCECPD-GFTDPNCSS 38
Score = 27.4 bits (61), Expect = 0.89
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 12 SDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGP-------ICECRNLDFEGIYCE 63
S + E + PC +PC +GG C +++ +C+C F GI+C+
Sbjct: 38 SVVEVASDEEEPTSAGPCTP-NPCHNGGTCEISEAYRGDTFIGYVCKCPR-GFNGIHCQ 94
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 28.6 bits (64), Expect = 0.11
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 28 PCEEHDPCKHGGIC--ISTDSGPICECRNLDFEGIYCEKVEI 67
P C +GG+C I + C C + G C+ ++
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVI-GYSGDRCQTRDL 47
>3isu_A RAS GTPase-activating-like protein iqgap3; structural genomics,
structural genomics consortium (SGC), RGC domain,
calmodulin-binding; 1.88A {Homo sapiens}
Length = 121
Score = 29.4 bits (66), Expect = 0.17
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 39 GICISTDSGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSRKKLRL 86
G+ + + P RN+ F+ ++ V A + V R +L
Sbjct: 36 GVLVEIEDLPASHFRNVIFDITPGDEAGKFEVNAKFLGVDMERFQLHY 83
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 27.9 bits (62), Expect = 0.23
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 28 PCEEHDPCKHGGIC--ISTDSGPICECRNLDFEGIYCEKVEI 67
P C H G+C I C C + G C+ ++
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVV-GYIGERCQYRDL 47
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding;
HET: NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 29.1 bits (64), Expect = 0.36
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 26 LDPCEEHDPCKHGGICISTDSGPICECRN---LDFEGIYCEKVEISVVRAISMRVRGSRK 82
++ C E C C +++ C C L + C+ + V + R+ +
Sbjct: 1 VNECAEEGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 83 KLRLIECE 90
E
Sbjct: 59 LPHRSEYT 66
>1x0h_A P195, RAS GTPase-activating-like protein iqgap1; cell adhesion,
beta-sandwich, protein-protein interaction, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.332.1.1
Length = 112
Score = 28.2 bits (63), Expect = 0.38
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 39 GICISTDSGPICECRNLDFEGIYCEKVEISVVRAISMRVRGSRKKLRL 86
G+ + + + + +N+ FE E+V V+A M V+ L
Sbjct: 21 GVLLEIEDLQVNQFKNVIFEISPTEEVGDFEVKAKFMGVQMETFMLHY 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.41
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 14/58 (24%)
Query: 68 SVVRAISM-RVRGSRKKLRLIECEDGAGMDPPSRELII-GDRQTGKTALAIDTIINQK 123
+V R ++R + +LR P++ ++I G +GKT +A+D ++ K
Sbjct: 130 NVSRLQPYLKLRQALLELR------------PAKNVLIDGVLGSGKTWVALDVCLSYK 175
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 28.4 bits (64), Expect = 0.41
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
D C PC++GG C IC C FEG CE
Sbjct: 48 DQCA-SSPCQNGGSCKDQLQSYICFCLP-AFEGRNCET 83
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 25.5 bits (57), Expect = 1.0
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
D CE +PC +GG C + C C FEG CE
Sbjct: 4 DQCES-NPCLNGGSCKDDINSYECWCPF-GFEGKNCE 38
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 27.9 bits (61), Expect = 1.0
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 12 SDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
Y++ + + H +C+ +S CEC + + G C K
Sbjct: 279 LHLARYFYAISD--IKVRGRCKCNLHATVCVYDNSKLTCECEH-NTTGPDCGK 328
Score = 25.6 bits (55), Expect = 5.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 13 DCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
C S+ +V D E C++GG C + C C + GI CEK
Sbjct: 353 ACIPSISSIGTNVCD--NELLHCQNGGTCH---NNVRCLCPA-AYTGILCEK 398
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 27.2 bits (59), Expect = 1.2
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 3 ENRNCTALCSDCQYCHYSVEN----SVLDPCEEHDPCKHGGICISTDSGPICECRNLDFE 58
+ + S+ + +N E C++GG C ICEC + F
Sbjct: 119 FEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR---ICECPD-GFH 174
Query: 59 GIYCEK 64
G +CE
Sbjct: 175 GPHCEG 180
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 27.1 bits (60), Expect = 1.2
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 13 DCQYCHYSV-ENSVLDPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKVEIS 68
C ++ + P C G C+ + C C ++ + G C+ V++
Sbjct: 108 ACHKLKAALCYTASCQP----WSCSGHGECVEIINNYTCNC-DVGYYGPQCQFVQVD 159
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 27.1 bits (60), Expect = 1.2
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 33 DPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65
C G C+ T C C F G CE V
Sbjct: 125 MSCSKQGECLETIGNYTCSC-YPGFYGPECEYV 156
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 26.3 bits (58), Expect = 1.4
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 27 DPCEEHDPCKHGGICIST--DSGPICECRNLDFEGIYCE 63
C C +GG C S +C+C F G CE
Sbjct: 49 KSCS-EPRCFNGGTCQQALYFSDFVCQCPE-GFAGKSCE 85
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 27.0 bits (60), Expect = 1.4
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 13 DCQYCHYSVENSVLDPCEEH----DPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65
C ++ C C G C+ T + C+C F G+ CE++
Sbjct: 108 RCSKKKLAL-------CYTAACTNTSCSGHGECVETINNYTCKCDPG-FSGLKCEQI 156
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.0 bits (59), Expect = 2.1
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 102 LIIGDRQTGKTALAIDTIINQKR 124
L++G R+TGK+++ I IN+
Sbjct: 34 LVLGLRRTGKSSI-IKIGINELN 55
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 25.6 bits (56), Expect = 2.2
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 26 LDPCEEHDPCKHGGICISTDSG-PICECR 53
++ CE C G C P C C
Sbjct: 1 METCENV-DCGPGKKCRMNKKNKPRCVCA 28
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 26.5 bits (57), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 26 LDPCEEHDPCKHGGICISTDSG-PICECRN 54
L PC+ H CKHG +C ++ P+C C++
Sbjct: 3 LAPCQNHH-CKHGKVCELDENNTPMCVCQD 31
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 26.6 bits (59), Expect = 2.6
Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 60 IYC-EKVEISVVRAISMRVRGSRKKLRLIECEDGAGMDPPS-RELIIGDRQTGKTALAI 116
Y ++ SV +A + + ++ + +D + + ++ I D+Q G + +
Sbjct: 191 AYASDQAHSSVEKA--GLISLVK--MKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 25.8 bits (57), Expect = 2.8
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
C G CI C+CR+ +EG +C++
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRS-GWEGRFCQR 50
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 26.2 bits (57), Expect = 3.4
Identities = 7/23 (30%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 102 LIIGDRQTGKTALAIDTIINQKR 124
L++G R+ GK++L + +N++
Sbjct: 35 LLLGIRRVGKSSL-LRAFLNERP 56
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 25.6 bits (57), Expect = 3.8
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 97 PPSRE---LIIGDRQTGKTALAI 116
P S+ I+G R GK++L I
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTI 24
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 25.6 bits (56), Expect = 5.0
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
D C +GG C C C EG CE
Sbjct: 211 DKANCSTTCFNGGTCFYPGK---CICPP-GLEGEQCE 243
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 25.2 bits (56), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 95 MDPPSRE----LIIGDRQTGKTALAI 116
MDPP E +++G GK+AL I
Sbjct: 2 MDPPPSETHKLVVVGGGGVGKSALTI 27
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 25.6 bits (56), Expect = 5.9
Identities = 8/54 (14%), Positives = 15/54 (27%)
Query: 1 MSENRNCTALCSDCQYCHYSVENSVLDPCEEHDPCKHGGICISTDSGPICECRN 54
+ C LC++ C + C E + + + I R
Sbjct: 311 AKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRG 364
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 25.2 bits (54), Expect = 7.6
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 2 SENRNCTALCSDCQ-----YCHYSVENSVLDPCEEHDPCKHGG----ICISTDSGPICEC 52
N C+ +C+D + C + CE+ D C+ +C++ + G C+C
Sbjct: 5 DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQC 64
Query: 53 RN 54
Sbjct: 65 EE 66
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 24.9 bits (55), Expect = 7.6
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 95 MDPPSRE---LIIGDRQTGKTALAI 116
M S + ++ G GK++L +
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVL 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,896,490
Number of extensions: 107050
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 181
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)