RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10055
(124 letters)
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 36.7 bits (85), Expect = 2e-05
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 27 DPCEEHDPCKHGGICISTDSG-PICECRNLDFEGIYCEKVE 66
+PC +PC++ G C+ST C+C F G C E
Sbjct: 2 NPCCS-NPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPE 41
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 36.0 bits (83), Expect = 5e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 26 LDPCEEHDPCKHGGICISTDS-GPICECRNLDFEGIYCEKVE 66
++PC PC+H GIC+ C+C + G C E
Sbjct: 2 VNPCCY-YPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 38.6 bits (90), Expect = 7e-05
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 100 RELIIGDRQTGKTALAIDTIINQKR 124
+ + G GKT L ++ I N +
Sbjct: 70 KIGLFGGAGVGKTVLIMELINNVAK 94
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 37.1 bits (86), Expect = 2e-04
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 100 RELIIGDRQTGKTALAIDTIINQKR 124
RELIIGDRQTGKT++AIDTIINQKR
Sbjct: 70 RELIIGDRQTGKTSIAIDTIINQKR 94
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 32.7 bits (75), Expect = 7e-04
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
D CE + PC +GG C + C C FEG CE
Sbjct: 4 DQCESN-PCLNGGSCKDDINSYECWCPF-GFEGKNCE 38
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 32.9 bits (75), Expect = 9e-04
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLD-FEGIYCEKVEI 67
+ C H G+C+ ++ C + + G C+ ++
Sbjct: 5 PLSHD-GYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 45
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 32.0 bits (73), Expect = 0.002
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 26 LDPCEEH-DPCKHGGICISTDSGPICECRNLDFEGIYCE 63
+D C +PC+H G CI+T C+C + G CE
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCE 40
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 31.6 bits (72), Expect = 0.002
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
D C PC H G C+ + CEC F G C+
Sbjct: 1 DECAS-SPCLHNGRCLDKINEFQCECPT-GFTGHLCQ 35
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 31.7 bits (72), Expect = 0.002
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65
C C G C+ T + C+C F G+ CE++
Sbjct: 2 AACTNT-SCSGHGECVETINNYTCKCDP-GFSGLKCEQI 38
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 31.6 bits (72), Expect = 0.002
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
D CE PC++ G C C C FEG CE
Sbjct: 1 DQCETS-PCQNQGKCKDGLGEYTCTCLE-GFEGKNCE 35
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 31.7 bits (72), Expect = 0.002
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEKV 65
C++ C G C+ T C C F G CE V
Sbjct: 2 ASCQD-MSCSKQGECLETIGNYTCSCYP-GFYGPECEYV 38
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 31.6 bits (72), Expect = 0.002
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
+ C +PC++ C+ C C +EG++CE
Sbjct: 2 NECVS-NPCQNDATCLDQIGEFQCICMP-GYEGVHCE 36
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 31.6 bits (72), Expect = 0.003
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCE 63
D C PC++GG C IC C FEG CE
Sbjct: 3 DQCAS-SPCQNGGSCKDQLQSYICFCLP-AFEGRNCE 37
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 33.5 bits (76), Expect = 0.003
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 100 RELIIGDRQTGKTALAIDTIINQK 123
R LI+ + GKT L + +
Sbjct: 45 RGLIVAPPKAGKTMLLQNIAQSIA 68
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 31.0 bits (70), Expect = 0.004
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 33 DPCKHGGICISTDSGPICECRNLD-FEGIYCE 63
C +GG C C+ + F G CE
Sbjct: 4 PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 35
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 31.0 bits (70), Expect = 0.005
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 28 PCEEHDPCKHGGICISTDS--GPICECRNLDFEGIYCEKVEI 67
P C +GG+C+ +S C C + G C+ ++
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVI-GYSGDRCQTRDL 47
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 30.6 bits (69), Expect = 0.007
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 27 DPC--EEHDPCKHGGIC-ISTDSGPICECRNLDFEGIYCEKVEI 67
C + C G + + P C C + G CE+V++
Sbjct: 6 SRCPKQYKHYCIKGRCRFVVAEQTPSCVCDE-GYIGARCERVDL 48
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 32.2 bits (73), Expect = 0.009
Identities = 20/24 (83%), Positives = 23/24 (95%)
Query: 100 RELIIGDRQTGKTALAIDTIINQK 123
RELIIGDRQTGKTA+A DTI+NQ+
Sbjct: 69 RELIIGDRQTGKTAVATDTILNQQ 92
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 28.6 bits (64), Expect = 0.039
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 24 SVLDPC--EEHDPCKHGGIC-ISTDSGPICECRNLDFEGIYCEKVEI 67
S + C C HG + + P C C + + G CE ++
Sbjct: 2 SHFNDCPDSHTQFCFHGTCRFLVQEDKPACVCHS-GYVGARCEHADL 47
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 26.3 bits (58), Expect = 0.26
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRNLDFEGIYCEK 64
PC C HG CI C+CR+ +EG +C++
Sbjct: 9 HPCASL-CCGHGT-CIDGIGSFSCDCRS-GWEGRFCQR 43
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 24.3 bits (53), Expect = 1.0
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 26 LDPCEEHDPCKHGGICISTDSGPICECRN---LDFEGIYCEKV 65
+D C++ D C +C++ + G C+C LD C+ V
Sbjct: 1 IDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKAV 41
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 26.3 bits (57), Expect = 1.4
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 47 GPI----CEC---RNLDFEGIYCEKVEISVVRAISMRVRGSR 81
GPI C C + FEG CE+ + V ++ VR R
Sbjct: 50 GPIKDYECACGKYKRQRFEGKVCERCGVEVTKS---IVRRYR 88
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 24.0 bits (52), Expect = 1.8
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 28 PCEEHDPCKHGGIC-ISTDSGPICECRNLDFEGIYCE 63
+ + C HG + S C C + G+ CE
Sbjct: 7 SSDMNGYCLHGQCIYLVDMSQNYCRCEV-GYTGVRCE 42
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.5 bits (54), Expect = 1.9
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 102 LIIGDRQTGKTALA 115
L++G R+TGK+++
Sbjct: 33 LVLGLRRTGKSSII 46
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 24.7 bits (54), Expect = 2.5
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 1 MSENRNCTALCSDCQYCHYSVENSVL 26
+S+N++ + Q ++ V+
Sbjct: 63 LSKNKSIICYYNTYQVVQFNRLPLVV 88
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 23.8 bits (51), Expect = 3.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 27 DPCEEHDPCKHGGIC-----ISTDSGPICECRNLDFEGIYCE 63
E+ C +GG C +S S +C+C+ F G C
Sbjct: 7 AEKEKT-FCVNGGECFMVKDLSNPSRYLCKCQP-GFTGARCT 46
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 183
Score = 24.6 bits (53), Expect = 3.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 92 GAGMDPPSRELIIGDRQTGKTALAI 116
AG PP+R L+ G G A+A
Sbjct: 23 AAGTVPPARVLVFGVGVAGLQAIAT 47
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 24.9 bits (53), Expect = 3.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 102 LIIGDRQTGKTALA 115
L+ GDR TGK+
Sbjct: 32 LVFGDRGTGKSTAV 45
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 23.2 bits (50), Expect = 3.5
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECR 53
D C+E D CKHG CI+TD CEC
Sbjct: 6 DECKEPDVCKHG-QCINTDGSYRCECP 31
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 122
Score = 24.3 bits (53), Expect = 3.9
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 36 KHGGICISTDSGPICECRNLDFEGIY 61
G I D + + + +Y
Sbjct: 59 GSGSGLIIPDQWEDDKDSVVGKQNVY 84
>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein
BC3120 {Bacillus cereus [TaxId: 1396]}
Length = 403
Score = 24.6 bits (53), Expect = 4.6
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 13 DCQYCHYSVENSVLDPCEEHDP 34
D Q + +V N++++ + ++
Sbjct: 133 DIQSVNENVYNNIIEYIKANNS 154
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 22.8 bits (49), Expect = 4.9
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECRN---LDFEGIYCE 63
D C+E GG CI+T C C L+ + C+
Sbjct: 4 DECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 22.4 bits (48), Expect = 5.1
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECR 53
D CE C +C + C C
Sbjct: 3 DECENGGFCSG--VCHNLPGTFECICG 27
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 24.3 bits (51), Expect = 5.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 92 GAGMDPPSRELIIGDRQTGKTALAIDTIINQ 122
G G++ S + G+ +TGK+ L +
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTC 58
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 23.8 bits (50), Expect = 6.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 92 GAGMDPPSRELIIGDRQTGKTALAIDTIIN 121
G+ L+ G TGKT +I + N
Sbjct: 20 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 49
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 22.1 bits (47), Expect = 7.3
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 26 LDPCEEHDPCKHGGICISTDSGPICECR 53
+D C G C++T C+C
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCD 30
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 22.1 bits (47), Expect = 8.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 27 DPCEEHDPCKHGGICISTDSGPICECR 53
D C+ GG+C +T+ CEC
Sbjct: 3 DECQRDPLLCRGGVCHNTEGSYRCECP 29
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 23.5 bits (49), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 97 PPSRE---LIIGDRQTGKTALAI 116
PPS +++G GK+AL I
Sbjct: 2 PPSETHKLVVVGGGGVGKSALTI 24
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
subsp. Thermus thermophilus [TaxId: 271]}
Length = 110
Score = 22.9 bits (49), Expect = 9.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 70 VRAISMRVRGSRKKLRLI 87
+AI+ VR S +K+RL+
Sbjct: 3 AKAIARYVRISPRKVRLV 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,634
Number of extensions: 22441
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 117
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)