BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10057
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2VDN6|SF3A1_BOVIN Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1
Length = 793
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 12 LDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLR 71
+++EP KK+++E+SL+PE+ FL + P V+ V VPNM DK EWKLNGQ L +L L
Sbjct: 676 MEDEPASKKLKTEDSLMPEEEFLRRNKGP-VSIKVQVPNMQDKTEWKLNGQVLVFTLPLT 734
Query: 72 TSVTALKSQIHDLIGMPAGKQKLHLD 97
V+ +K +IH+ GMPAGKQKL +
Sbjct: 735 DQVSVIKVKIHEATGMPAGKQKLQYE 760
>sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1
Length = 793
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 12 LDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLR 71
+++EP KK+++E+SL+PE+ FL + P V+ V VPNM DK EWKLNGQ L +L L
Sbjct: 676 MEDEPTSKKLKTEDSLMPEEEFLRRNKGP-VSIKVQVPNMQDKTEWKLNGQVLVFTLPLT 734
Query: 72 TSVTALKSQIHDLIGMPAGKQKLHLD 97
V+ +K +IH+ GMPAGKQKL +
Sbjct: 735 DQVSVIKVKIHEATGMPAGKQKLQYE 760
>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1
Length = 791
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 19 KKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALK 78
KK+++E+SL+PE+ FL + P V+ V VPNM DK EWKLNGQ L +L L V+ +K
Sbjct: 681 KKLKTEDSLMPEEEFLRRNKGP-VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIK 739
Query: 79 SQIHDLIGMPAGKQKLHLD 97
+IH+ GMPAGKQKL +
Sbjct: 740 VKIHEATGMPAGKQKLQYE 758
>sp|Q86A14|SF3A1_DICDI Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum
GN=sf3a1 PE=3 SV=1
Length = 760
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 14 EEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTS 73
EEP KK++ ++ LIPE V+L P N+ V M DK ++L S
Sbjct: 653 EEPQSKKLKIDDVLIPESVWLQNNPNP---VNLTV-EMADK------SNIYQITLQPTDS 702
Query: 74 VTALKSQIHDLIGMPAGKQKLH 95
++ LK +I +L GMP KQKL
Sbjct: 703 ISLLKEKIKELNGMPTNKQKLQ 724
>sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana
GN=At1g14650 PE=1 SV=2
Length = 785
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 24 EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSL-DLRTSVTALKSQIH 82
E +L+PE FL++ P T V PN D GQ + +++ L +V +LK +I
Sbjct: 686 ESALVPEDQFLAQHPGP-ATIRVSKPNEND-------GQFMEITVQSLSENVGSLKEKIA 737
Query: 83 DLIGMPAGKQKL 94
I +PA KQKL
Sbjct: 738 GEIQIPANKQKL 749
>sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus (strain YJ016) GN=uvrB
PE=3 SV=2
Length = 676
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 17 VGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTA 76
+G +S + + + V LSK+A P++++NV+ P +K KL Q + DL + A
Sbjct: 600 LGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEITKLEAQMYKHAQDLEFELAA 659
Query: 77 LK 78
K
Sbjct: 660 QK 661
>sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus (strain CMCP6) GN=uvrB
PE=3 SV=1
Length = 676
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 17 VGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTA 76
+G +S + + + V LSK+A P++++NV+ P +K KL Q + DL + A
Sbjct: 600 LGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEITKLEAQMYKHAQDLEFELAA 659
Query: 77 LK 78
K
Sbjct: 660 QK 661
>sp|Q8X6I9|YAGT_ECO57 Putative xanthine dehydrogenase YagT iron-sulfur-binding subunit
OS=Escherichia coli O157:H7 GN=yagT PE=3 SV=1
Length = 229
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 40 PNVTFNVVVPNMTDKPE-----WKLNGQTLSLSLDLRTS-VTALKSQIHDLIGMPAG 90
P+ T VP T PE K+NG+T L +D RT+ + AL+ +H LIG G
Sbjct: 43 PHSTLAASVPAATPAPEIMPLTLKVNGKTEQLEVDTRTTLLDALRENLH-LIGTKKG 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,376,221
Number of Sequences: 539616
Number of extensions: 1373399
Number of successful extensions: 2935
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2881
Number of HSP's gapped (non-prelim): 55
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)