Query psy10057
Match_columns 99
No_of_seqs 150 out of 303
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01800 SF3a120_C Ubiquitin-li 99.5 7.2E-14 1.6E-18 89.5 4.8 43 55-97 1-43 (76)
2 cd01794 DC_UbP_C dendritic cel 99.0 3.2E-10 7E-15 72.2 4.3 39 59-97 6-44 (70)
3 PTZ00044 ubiquitin; Provisiona 99.0 5.1E-10 1.1E-14 70.6 4.5 39 59-97 8-46 (76)
4 KOG0007|consensus 99.0 1.5E-10 3.3E-15 92.4 2.2 81 9-97 247-329 (341)
5 cd01807 GDX_N ubiquitin-like d 99.0 7E-10 1.5E-14 70.3 4.4 39 59-97 8-46 (74)
6 cd01813 UBP_N UBP ubiquitin pr 99.0 9.6E-10 2.1E-14 70.7 4.3 39 58-96 6-44 (74)
7 cd01802 AN1_N ubiquitin-like d 99.0 1E-09 2.2E-14 74.9 4.6 39 59-97 35-73 (103)
8 cd01791 Ubl5 UBL5 ubiquitin-li 98.9 2.7E-09 5.8E-14 68.7 6.1 39 59-97 9-47 (73)
9 cd01809 Scythe_N Ubiquitin-lik 98.9 3.5E-09 7.7E-14 65.4 5.8 38 60-97 9-46 (72)
10 cd01810 ISG15_repeat2 ISG15 ub 98.9 2.2E-09 4.7E-14 68.1 4.5 39 59-97 6-44 (74)
11 cd01798 parkin_N amino-termina 98.9 2.1E-09 4.6E-14 67.3 4.4 39 59-97 6-44 (70)
12 cd01793 Fubi Fubi ubiquitin-li 98.9 2.2E-09 4.8E-14 68.1 4.3 37 61-97 8-44 (74)
13 cd01796 DDI1_N DNA damage indu 98.9 2.4E-09 5.2E-14 67.9 4.3 39 60-98 8-46 (71)
14 cd01806 Nedd8 Nebb8-like ubiq 98.9 3.9E-09 8.5E-14 65.8 4.8 39 59-97 8-46 (76)
15 cd01797 NIRF_N amino-terminal 98.9 2.7E-09 5.8E-14 69.2 4.1 39 59-97 8-48 (78)
16 KOG0005|consensus 98.9 1.6E-09 3.5E-14 69.6 2.6 40 58-97 7-46 (70)
17 cd01803 Ubiquitin Ubiquitin. U 98.8 4.3E-09 9.4E-14 65.6 4.4 39 59-97 8-46 (76)
18 PF00240 ubiquitin: Ubiquitin 98.8 6.6E-09 1.4E-13 64.1 5.0 40 58-97 2-41 (69)
19 cd01804 midnolin_N Ubiquitin-l 98.8 1.4E-08 3E-13 65.5 6.2 38 60-97 10-47 (78)
20 cd01799 Hoil1_N Ubiquitin-like 98.8 9.7E-09 2.1E-13 66.4 4.3 37 60-97 11-47 (75)
21 cd01805 RAD23_N Ubiquitin-like 98.8 1.4E-08 3.1E-13 63.9 4.8 39 59-97 8-48 (77)
22 cd01812 BAG1_N Ubiquitin-like 98.7 1.5E-08 3.2E-13 62.7 4.3 38 60-97 8-45 (71)
23 cd01790 Herp_N Homocysteine-re 98.7 3E-08 6.5E-13 65.5 5.8 47 41-97 1-51 (79)
24 cd01792 ISG15_repeat1 ISG15 ub 98.7 2.5E-08 5.5E-13 64.2 5.4 39 59-97 10-50 (80)
25 KOG0003|consensus 98.7 2.4E-09 5.1E-14 75.6 0.5 40 58-97 7-46 (128)
26 KOG0004|consensus 98.7 7.9E-09 1.7E-13 76.0 1.9 40 58-97 7-46 (156)
27 smart00213 UBQ Ubiquitin homol 98.7 7.8E-08 1.7E-12 57.4 5.6 36 62-97 10-45 (64)
28 cd01808 hPLIC_N Ubiquitin-like 98.6 1.6E-07 3.5E-12 58.9 5.4 37 60-97 9-45 (71)
29 cd01763 Sumo Small ubiquitin-r 98.5 5.6E-07 1.2E-11 59.0 6.5 47 41-97 11-57 (87)
30 cd01769 UBL Ubiquitin-like dom 98.4 5.6E-07 1.2E-11 54.2 4.8 38 60-97 6-43 (69)
31 cd01795 USP48_C USP ubiquitin- 98.3 1.2E-06 2.6E-11 61.0 4.2 36 62-97 15-50 (107)
32 PF14560 Ubiquitin_2: Ubiquiti 98.2 1.1E-05 2.4E-10 52.5 7.3 48 42-97 2-49 (87)
33 cd01814 NTGP5 Ubiquitin-like N 98.2 1.6E-06 3.5E-11 61.0 3.2 48 41-97 4-58 (113)
34 TIGR00601 rad23 UV excision re 98.2 2.4E-06 5.3E-11 69.8 4.6 39 59-97 8-49 (378)
35 cd01789 Alp11_N Ubiquitin-like 97.9 6.4E-05 1.4E-09 49.2 6.6 36 61-96 12-47 (84)
36 cd01815 BMSC_UbP_N Ubiquitin-l 97.9 1E-05 2.3E-10 53.0 2.8 31 67-97 15-49 (75)
37 PF11976 Rad60-SLD: Ubiquitin- 97.8 0.00011 2.5E-09 45.5 6.3 46 42-97 1-47 (72)
38 KOG0001|consensus 97.8 7E-05 1.5E-09 44.1 4.8 39 59-97 7-45 (75)
39 KOG0011|consensus 97.6 4.5E-05 9.7E-10 62.0 3.5 41 58-98 7-49 (340)
40 cd00196 UBQ Ubiquitin-like pro 97.6 0.00013 2.9E-09 40.1 4.3 38 60-97 6-43 (69)
41 PF11543 UN_NPL4: Nuclear pore 97.5 0.00021 4.6E-09 46.8 4.8 45 41-96 4-48 (80)
42 PLN02560 enoyl-CoA reductase 97.3 0.00034 7.3E-09 55.9 4.6 38 60-97 9-50 (308)
43 KOG0010|consensus 97.1 0.00082 1.8E-08 57.1 4.9 46 41-97 15-60 (493)
44 KOG4248|consensus 96.5 0.003 6.4E-08 57.8 3.8 40 58-97 9-48 (1143)
45 cd01811 OASL_repeat1 2'-5' oli 95.7 0.036 7.9E-07 36.9 5.3 36 61-97 10-45 (80)
46 cd01788 ElonginB Ubiquitin-lik 95.6 0.018 3.9E-07 40.9 3.7 34 62-95 12-45 (119)
47 cd06406 PB1_P67 A PB1 domain i 95.5 0.032 6.8E-07 37.2 4.4 37 60-97 10-46 (80)
48 smart00166 UBX Domain present 95.4 0.11 2.3E-06 33.1 6.7 45 40-94 3-47 (80)
49 cd01770 p47_UBX p47-like ubiqu 95.2 0.065 1.4E-06 34.8 5.2 37 40-86 3-39 (79)
50 cd01767 UBX UBX (ubiquitin reg 94.9 0.093 2E-06 33.1 5.2 37 40-86 1-37 (77)
51 PF00789 UBX: UBX domain; Int 94.7 0.22 4.9E-06 31.4 6.6 40 41-90 6-45 (82)
52 cd01774 Faf1_like2_UBX Faf1 ik 94.5 0.25 5.3E-06 32.5 6.7 48 37-96 1-48 (85)
53 smart00295 B41 Band 4.1 homolo 94.4 0.19 4E-06 35.6 6.4 38 41-88 3-40 (207)
54 cd01777 SNX27_RA Ubiquitin dom 93.9 0.12 2.7E-06 34.9 4.3 44 41-94 1-44 (87)
55 PF13881 Rad60-SLD_2: Ubiquiti 93.9 0.23 5E-06 34.4 5.7 47 41-97 2-56 (111)
56 cd01801 Tsc13_N Ubiquitin-like 93.9 0.076 1.6E-06 33.7 3.1 28 69-96 20-48 (77)
57 KOG1872|consensus 93.5 0.083 1.8E-06 45.0 3.5 37 60-96 11-48 (473)
58 PF13019 Telomere_Sde2: Telome 93.0 0.33 7.2E-06 36.1 5.7 31 62-92 15-45 (162)
59 cd06411 PB1_p51 The PB1 domain 92.7 0.26 5.6E-06 32.7 4.3 35 63-97 8-42 (78)
60 smart00666 PB1 PB1 domain. Pho 92.7 0.46 1E-05 29.7 5.4 38 60-97 9-46 (81)
61 PF00564 PB1: PB1 domain; Int 92.7 0.62 1.4E-05 29.1 5.9 38 60-97 9-47 (84)
62 cd01771 Faf1_UBX Faf1 UBX doma 92.6 0.78 1.7E-05 29.8 6.4 44 41-95 4-47 (80)
63 cd01772 SAKS1_UBX SAKS1-like U 92.3 0.43 9.3E-06 30.6 4.9 36 41-86 4-39 (79)
64 cd06409 PB1_MUG70 The MUG70 pr 91.4 0.87 1.9E-05 30.5 5.7 37 60-96 9-48 (86)
65 PF09379 FERM_N: FERM N-termin 91.0 0.47 1E-05 29.4 4.0 30 59-88 4-33 (80)
66 KOG4495|consensus 91.0 0.34 7.4E-06 33.8 3.5 36 61-96 11-46 (110)
67 KOG3493|consensus 90.9 0.14 3E-06 33.4 1.5 35 60-94 10-44 (73)
68 cd01773 Faf1_like1_UBX Faf1 ik 90.2 2 4.4E-05 28.4 6.6 47 39-96 3-49 (82)
69 KOG0006|consensus 89.4 0.59 1.3E-05 38.9 4.2 36 62-97 14-49 (446)
70 cd06407 PB1_NLP A PB1 domain i 88.6 1.6 3.4E-05 28.6 5.1 38 59-96 7-45 (82)
71 cd05992 PB1 The PB1 domain is 88.5 1.6 3.4E-05 27.0 4.9 37 60-96 8-45 (81)
72 PF10302 DUF2407: DUF2407 ubiq 86.6 1.1 2.5E-05 30.2 3.6 34 64-97 14-51 (97)
73 smart00455 RBD Raf-like Ras-bi 84.2 4.5 9.7E-05 25.6 5.4 43 44-96 2-44 (70)
74 cd06410 PB1_UP2 Uncharacterize 83.4 4.5 9.6E-05 27.4 5.4 38 59-97 20-57 (97)
75 KOG4250|consensus 83.2 1.7 3.7E-05 38.9 4.1 37 61-97 324-360 (732)
76 PF02196 RBD: Raf-like Ras-bin 83.2 8.7 0.00019 24.2 6.4 42 43-94 2-43 (71)
77 KOG1769|consensus 81.5 8.8 0.00019 26.5 6.3 47 41-97 20-66 (99)
78 cd06408 PB1_NoxR The PB1 domai 80.2 9.6 0.00021 25.5 6.0 29 60-88 10-38 (86)
79 cd01760 RBD Ubiquitin-like dom 78.9 8.6 0.00019 24.7 5.3 43 44-96 2-44 (72)
80 PF11470 TUG-UBL1: GLUT4 regul 77.7 5.8 0.00013 25.1 4.2 38 60-97 5-42 (65)
81 PF14533 USP7_C2: Ubiquitin-sp 74.5 4 8.8E-05 30.6 3.3 32 58-89 129-160 (213)
82 cd06398 PB1_Joka2 The PB1 doma 74.2 12 0.00026 24.9 5.2 38 59-96 7-50 (91)
83 cd06396 PB1_NBR1 The PB1 domai 72.2 12 0.00027 24.7 4.8 30 59-88 7-38 (81)
84 PF08337 Plexin_cytopl: Plexin 70.2 11 0.00024 32.7 5.4 43 41-91 189-233 (539)
85 KOG0013|consensus 69.7 4.8 0.00011 31.5 2.8 38 60-97 155-192 (231)
86 cd06397 PB1_UP1 Uncharacterize 69.0 13 0.00029 24.9 4.4 38 59-96 7-44 (82)
87 KOG4572|consensus 63.3 10 0.00022 35.5 3.9 37 60-96 3-40 (1424)
88 KOG2689|consensus 61.2 15 0.00032 29.8 4.1 38 41-88 210-247 (290)
89 PF14836 Ubiquitin_3: Ubiquiti 59.8 28 0.00061 23.4 4.7 33 62-95 14-46 (88)
90 KOG3439|consensus 56.9 24 0.00052 25.1 4.1 34 63-96 46-79 (116)
91 PRK05738 rplW 50S ribosomal pr 55.7 12 0.00026 24.9 2.4 44 48-91 6-50 (92)
92 KOG2086|consensus 52.8 41 0.00088 28.3 5.5 47 41-97 305-352 (380)
93 smart00144 PI3K_rbd PI3-kinase 52.2 61 0.0013 21.8 5.5 48 27-84 4-51 (108)
94 PF02192 PI3K_p85B: PI3-kinase 51.0 25 0.00053 23.0 3.3 22 64-85 2-23 (78)
95 KOG3784|consensus 50.2 38 0.00083 28.7 5.0 38 41-88 107-144 (407)
96 smart00314 RA Ras association 49.4 46 0.001 20.9 4.4 31 60-90 14-44 (90)
97 cd01817 RGS12_RBD Ubiquitin do 48.5 56 0.0012 21.3 4.6 40 45-94 3-42 (73)
98 COG3697 CitX Phosphoribosyl-de 47.3 19 0.00041 27.4 2.6 21 31-51 29-49 (182)
99 PF00788 RA: Ras association ( 47.3 66 0.0014 19.7 6.0 45 42-92 3-47 (93)
100 smart00143 PI3K_p85B PI3-kinas 45.8 28 0.0006 22.9 2.9 25 64-88 2-27 (78)
101 PF00794 PI3K_rbd: PI3-kinase 45.5 86 0.0019 20.6 5.8 38 37-84 13-50 (106)
102 cd01768 RA RA (Ras-associating 44.1 78 0.0017 19.7 6.6 31 60-90 11-41 (87)
103 PF12754 Blt1: Cell-cycle cont 42.8 8.1 0.00018 31.5 0.0 27 71-97 103-144 (309)
104 PTZ00380 microtubule-associate 42.6 1.2E+02 0.0026 21.5 6.6 51 33-91 20-70 (121)
105 PF00276 Ribosomal_L23: Riboso 41.6 9.5 0.00021 25.2 0.2 30 62-91 21-50 (91)
106 PF14533 USP7_C2: Ubiquitin-sp 40.9 44 0.00096 25.0 3.7 29 62-90 34-62 (213)
107 cd01787 GRB7_RA RA (RAS-associ 37.1 83 0.0018 21.0 4.2 30 60-89 11-40 (85)
108 KOG4583|consensus 36.7 26 0.00056 29.4 2.0 49 41-97 9-59 (391)
109 PF08817 YukD: WXG100 protein 36.1 93 0.002 19.4 4.2 29 61-89 12-40 (79)
110 PF07984 DUF1693: Domain of un 34.8 38 0.00083 27.8 2.7 37 60-97 22-58 (320)
111 CHL00030 rpl23 ribosomal prote 34.8 42 0.00091 22.6 2.5 43 49-91 7-49 (93)
112 PF12436 USP7_ICP0_bdg: ICP0-b 33.8 1.9E+02 0.004 22.1 6.3 57 31-95 167-223 (249)
113 PF09865 DUF2092: Predicted pe 33.3 1.2E+02 0.0026 23.1 5.1 46 44-89 53-107 (214)
114 COG0299 PurN Folate-dependent 32.9 76 0.0016 24.4 3.9 37 42-85 134-173 (200)
115 PHA02575 1 deoxynucleoside mon 31.9 2E+02 0.0043 22.4 6.1 58 26-85 165-225 (227)
116 KOG3157|consensus 31.7 28 0.00061 27.5 1.4 27 73-99 187-213 (244)
117 PF14619 SnAC: Snf2-ATP coupli 31.7 23 0.0005 22.5 0.8 16 19-34 56-74 (74)
118 KOG3206|consensus 31.7 60 0.0013 25.5 3.2 29 67-95 18-46 (234)
119 PF08783 DWNN: DWNN domain; I 31.5 64 0.0014 20.9 2.9 23 65-87 13-36 (74)
120 PRK12280 rplW 50S ribosomal pr 31.4 52 0.0011 24.4 2.7 45 47-91 8-52 (158)
121 cd01775 CYR1_RA Ubiquitin doma 30.6 1.2E+02 0.0025 20.9 4.2 33 58-90 9-41 (97)
122 KOG1434|consensus 30.3 1E+02 0.0023 25.3 4.5 45 41-90 134-178 (335)
123 cd08072 MPN_archaeal Mov34/MPN 29.7 1.5E+02 0.0033 20.0 4.7 30 36-68 84-116 (117)
124 PF07533 BRK: BRK domain; Int 29.3 33 0.00071 20.3 1.1 9 31-39 31-39 (46)
125 TIGR03636 L23_arch archaeal ri 29.0 49 0.0011 21.5 2.0 31 62-92 15-45 (77)
126 PF11620 GABP-alpha: GA-bindin 28.7 52 0.0011 22.3 2.1 29 63-91 4-32 (88)
127 COG5154 BRX1 RNA-binding prote 27.9 1.1E+02 0.0024 24.3 4.1 60 33-93 100-168 (283)
128 TIGR02080 O_succ_thio_ly O-suc 27.8 1.8E+02 0.0039 23.3 5.5 36 31-69 262-304 (382)
129 PF12436 USP7_ICP0_bdg: ICP0-b 27.3 72 0.0016 24.4 3.0 40 57-97 81-120 (249)
130 COG0544 Tig FKBP-type peptidyl 27.3 1.3E+02 0.0028 25.4 4.7 59 25-85 192-273 (441)
131 TIGR01682 moaD molybdopterin c 27.1 1E+02 0.0023 19.0 3.3 24 63-86 17-41 (80)
132 PRK05841 flgE flagellar hook p 27.1 83 0.0018 27.8 3.7 48 33-90 240-296 (603)
133 COG3900 Predicted periplasmic 27.0 93 0.002 24.8 3.6 35 56-90 100-143 (262)
134 PRK14548 50S ribosomal protein 26.3 54 0.0012 21.7 1.9 44 49-92 8-52 (84)
135 cd07857 STKc_MPK1 Catalytic do 26.3 36 0.00078 25.6 1.2 24 61-84 308-331 (332)
136 KOG3076|consensus 26.1 94 0.002 24.1 3.4 26 61-86 154-182 (206)
137 PF14847 Ras_bdg_2: Ras-bindin 24.9 1.3E+02 0.0028 20.6 3.6 30 60-89 9-38 (105)
138 PF13650 Asp_protease_2: Aspar 24.9 42 0.0009 20.1 1.1 35 58-92 4-38 (90)
139 TIGR01687 moaD_arch MoaD famil 24.6 1.3E+02 0.0028 18.7 3.4 24 62-86 16-39 (88)
140 cd05484 retropepsin_like_LTR_2 24.0 47 0.001 20.9 1.2 31 59-89 7-37 (91)
141 PF11490 DNA_pol3_a_NII: DNA p 23.6 93 0.002 19.8 2.6 27 54-80 23-49 (117)
142 PRK08114 cystathionine beta-ly 23.2 2.6E+02 0.0057 23.0 5.7 37 31-70 274-317 (395)
143 TIGR00824 EIIA-man PTS system, 23.1 2.3E+02 0.0051 18.9 4.6 35 62-96 29-64 (116)
144 PHA03420 E4 protein; Provision 23.1 1E+02 0.0023 22.3 2.9 20 41-70 117-136 (137)
145 PF08766 DEK_C: DEK C terminal 23.1 51 0.0011 19.4 1.2 23 71-93 20-42 (54)
146 TIGR01325 O_suc_HS_sulf O-succ 22.9 2.1E+02 0.0046 22.7 5.0 36 31-69 264-306 (380)
147 cd01818 TIAM1_RBD Ubiquitin do 22.3 2.4E+02 0.0053 18.6 4.6 33 60-92 8-40 (77)
148 PF10952 DUF2753: Protein of u 22.2 34 0.00074 25.0 0.3 16 32-47 108-123 (140)
149 PRK08453 fliD flagellar cappin 22.2 94 0.002 27.9 3.1 26 60-85 136-161 (673)
150 PRK07582 cystathionine gamma-l 22.1 2.3E+02 0.0049 22.5 5.0 36 31-69 258-300 (366)
151 smart00592 BRK domain in trans 21.5 53 0.0011 19.3 1.0 9 31-39 29-37 (45)
152 PRK05967 cystathionine beta-ly 21.1 1.3E+02 0.0028 24.8 3.5 36 31-69 274-316 (395)
153 KOG2507|consensus 20.9 1.2E+02 0.0026 26.3 3.4 41 41-91 314-354 (506)
154 cd00754 MoaD Ubiquitin domain 20.7 1.8E+02 0.0039 17.4 3.4 23 63-85 17-39 (80)
155 PRK07811 cystathionine gamma-s 20.1 1.6E+02 0.0034 23.7 3.7 36 31-69 272-314 (388)
No 1
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.47 E-value=7.2e-14 Score=89.49 Aligned_cols=43 Identities=58% Similarity=1.000 Sum_probs=41.8
Q ss_pred CCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 55 PEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 55 ~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+|||+|++++|+|++++||++||++|++.+|||+++|+|+|+
T Consensus 1 ~~~~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 1 PEWKLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred CCcccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 6899999999999999999999999999999999999999986
No 2
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.03 E-value=3.2e-10 Score=72.22 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=37.3
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++++|+|++.|||+|+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 469999999999999999999999999999999999996
No 3
>PTZ00044 ubiquitin; Provisional
Probab=99.01 E-value=5.1e-10 Score=70.56 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=37.4
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 469999999999999999999999999999999999986
No 4
>KOG0007|consensus
Probab=99.00 E-value=1.5e-10 Score=92.36 Aligned_cols=81 Identities=32% Similarity=0.471 Sum_probs=73.2
Q ss_pred CCCCCCCCCCcccCC-CCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEec-CCccHHHHHHHHHHHhC
Q psy10057 9 EPQLDEEPVGKKIRS-EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLD-LRTSVTALKSQIHDLIG 86 (99)
Q Consensus 9 ~~~~~~~P~~Kr~k~-e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~-~tdTV~~LK~kI~e~~G 86 (99)
.++.+++|.+|+.+. ++.|+||.+|++.|++ ++++.|+.++ ..+|+++.+++. .+..|..||+||.+..+
T Consensus 247 p~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~-------~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~ 318 (341)
T KOG0007|consen 247 PSPEEGDPRSKLDKSDEFALLPEADFLAGVPG-PVSIQVSRPV-------PADGQVIKITVQSLSENVASLKEKIADESQ 318 (341)
T ss_pred CCCCCCCChhhcchhhhhhccchhhhhccCCC-Ccceeccccc-------CCCCceeeeccccccccccccccccccccc
Confidence 344667788999988 6899999999999999 9999999998 467999999998 99999999999999999
Q ss_pred CCCCceEEEee
Q psy10057 87 MPAGKQKLHLD 97 (99)
Q Consensus 87 IP~~kQkL~~~ 97 (99)
|++++|++.|.
T Consensus 319 i~~~~q~~~~~ 329 (341)
T KOG0007|consen 319 IPANKQKLRGE 329 (341)
T ss_pred cchhheeeccC
Confidence 99999999874
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=98.98 E-value=7e-10 Score=70.26 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=37.1
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|..++||++||++|++++|+|++.|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 359999999999999999999999999999999999986
No 6
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.95 E-value=9.6e-10 Score=70.69 Aligned_cols=39 Identities=33% Similarity=0.330 Sum_probs=37.0
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
|++|+++.++|++++||++||++|++.+|+|+++|||+|
T Consensus 6 k~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 6 KWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 356999999999999999999999999999999999997
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=98.95 E-value=1e-09 Score=74.90 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=37.5
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++|+|++++||++||++|++++|||+++|||+|+
T Consensus 35 l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 35 LTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 569999999999999999999999999999999999986
No 8
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.94 E-value=2.7e-09 Score=68.73 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=37.2
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+.|+.+.++|++++||++||++|+++.|+++++|||+|+
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 569999999999999999999999999999999999986
No 9
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.92 E-value=3.5e-09 Score=65.39 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=36.3
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+++++++++++||++||++|++.+|+|++.|||.|+
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 9 DSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 48899999999999999999999999999999999986
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.90 E-value=2.2e-09 Score=68.11 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=37.3
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++++++++++||++||++|+++.|+|+++|+|+|+
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 569999999999999999999999999999999999986
No 11
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.90 E-value=2.1e-09 Score=67.26 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=37.4
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++++|+|+++|+|+|+
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 469999999999999999999999999999999999996
No 12
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=98.89 E-value=2.2e-09 Score=68.07 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=35.1
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+++++++|++++||++||++|++++|+|+++|||+|+
T Consensus 8 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 8 QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 3589999999999999999999999999999999996
No 13
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.89 E-value=2.4e-09 Score=67.87 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=36.9
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV 98 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~ 98 (99)
+|+++.++|++++||++||++|++++|+|++.|||+|+-
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G 46 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNG 46 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 588999999999999999999999999999999999973
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.87 E-value=3.9e-09 Score=65.80 Aligned_cols=39 Identities=21% Similarity=0.504 Sum_probs=36.9
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.+++++++||++||++|++++|+|++.|||+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 359999999999999999999999999999999999986
No 15
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.87 E-value=2.7e-09 Score=69.22 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=35.6
Q ss_pred ccCcE-EEEE-ecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQT-LSLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqt-i~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++ ++++ +.+++||++||++|++++|||+++|||+|+
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 46887 6895 899999999999999999999999999996
No 16
>KOG0005|consensus
Probab=98.85 E-value=1.6e-09 Score=69.55 Aligned_cols=40 Identities=20% Similarity=0.486 Sum_probs=38.4
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+.|.++++++|+|+.+|++|++++|||+.+|||+|.
T Consensus 7 tLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~ 46 (70)
T KOG0005|consen 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYA 46 (70)
T ss_pred eeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhc
Confidence 4789999999999999999999999999999999999986
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.85 E-value=4.3e-09 Score=65.60 Aligned_cols=39 Identities=28% Similarity=0.599 Sum_probs=36.9
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 359999999999999999999999999999999999986
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=98.84 E-value=6.6e-09 Score=64.10 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=38.1
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.++|+++.++|.+++||+.||++|++++|+|++.|+|+|+
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 3689999999999999999999999999999999999986
No 19
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.82 E-value=1.4e-08 Score=65.50 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=36.3
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+..+++|++++||++||++|+++.|+++++|||+|+
T Consensus 10 ~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 10 TGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 58899999999999999999999999999999999986
No 20
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.77 E-value=9.7e-09 Score=66.41 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=35.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|.+++++|++++||++||++|++++|||++.||| |+
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~ 47 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI 47 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec
Confidence 57899999999999999999999999999999999 75
No 21
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.76 E-value=1.4e-08 Score=63.90 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=36.8
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCC--CCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGM--PAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GI--P~~kQkL~~~ 97 (99)
++|++++++|++++||+.||++|++++|+ ++++|||+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 35889999999999999999999999999 9999999986
No 22
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.74 E-value=1.5e-08 Score=62.73 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=36.2
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|++..++|+.++||++||++|++.+|+|++.|||.|+
T Consensus 8 ~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 8 GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 38899999999999999999999999999999999986
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.74 E-value=3e-08 Score=65.45 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=39.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCcE--EEEEecCCccHHHHHHHHHHHhC--CCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQT--LSLSLDLRTSVTALKSQIHDLIG--MPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqt--i~l~v~~tdTV~~LK~kI~e~~G--IP~~kQkL~~~ 97 (99)
+|+|.|..|+ |+. +++++++++||++||++|++..+ .++++|||+|.
T Consensus 1 ~i~l~IK~~~----------~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 1 PVTLLIKSPN----------QKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred CeEEEEECCC----------CCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 4889999886 445 55666899999999999999885 55899999996
No 24
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.74 E-value=2.5e-08 Score=64.22 Aligned_cols=39 Identities=38% Similarity=0.474 Sum_probs=36.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE--Eee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL--HLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL--~~~ 97 (99)
++|+++++++++++||++||++|+++.|+++++||| .|+
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~ 50 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDS 50 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccC
Confidence 359999999999999999999999999999999999 553
No 25
>KOG0003|consensus
Probab=98.73 E-value=2.4e-09 Score=75.62 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=38.3
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|.|+|++++|++++||.+||++|+++.|||+++|+|+|+
T Consensus 7 ~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~ 46 (128)
T KOG0003|consen 7 TLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (128)
T ss_pred EeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhc
Confidence 4789999999999999999999999999999999999986
No 26
>KOG0004|consensus
Probab=98.68 E-value=7.9e-09 Score=75.96 Aligned_cols=40 Identities=28% Similarity=0.599 Sum_probs=38.1
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|.|++++++|++++||+++|++||+.+|||+++|||+|+
T Consensus 7 ~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifa 46 (156)
T KOG0004|consen 7 TLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (156)
T ss_pred hccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhh
Confidence 3789999999999999999999999999999999999986
No 27
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.66 E-value=7.8e-08 Score=57.42 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=33.9
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+++.++|++++||++||++|++.+|+|+++|+|.|+
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 378899999999999999999999999999999986
No 28
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.57 E-value=1.6e-07 Score=58.94 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=34.2
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+. ++++++++||++||++|++++|+++++|||.|+
T Consensus 9 ~g~~-~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 9 KDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred CCCE-EEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4764 899999999999999999999999999999986
No 29
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.49 E-value=5.6e-07 Score=59.03 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=42.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|.|+-+ +|+.+.+.|..+++++.||++++++.|+++++|||+|+
T Consensus 11 ~i~I~v~~~----------~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~ 57 (87)
T cd01763 11 HINLKVKGQ----------DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD 57 (87)
T ss_pred eEEEEEECC----------CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 577777643 49999999999999999999999999999999999996
No 30
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.42 E-value=5.6e-07 Score=54.24 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=36.3
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+.+.+.+.++.||+.||++|++++|+++++|+|.|+
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA 43 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 69999999999999999999999999999999999885
No 31
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.26 E-value=1.2e-06 Score=60.96 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=33.5
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
...+++|.+++||++||.+|++.+|+++.+|+|+|+
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 357889999999999999999999999999999986
No 32
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.19 E-value=1.1e-05 Score=52.52 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=39.9
Q ss_pred eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|.|.|..++.. ++.....++.+.||++||.+|+..+|+|++.|+|.+-
T Consensus 2 v~l~It~~~~~--------~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 2 VKLFITSSNSK--------QRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEEEESSSS--------SSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEEEEEeCCCC--------CeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 56677776532 4688899999999999999999999999999999874
No 33
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.17 E-value=1.6e-06 Score=60.95 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=39.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHH-----HHhCCC--CCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIH-----DLIGMP--AGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~-----e~~GIP--~~kQkL~~~ 97 (99)
.|.|+.++++..| .-.+.+.+++||++||++|+ +++|+| +++|||+|+
T Consensus 4 ~~e~kfrl~dg~d---------igp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys 58 (113)
T cd01814 4 QIEIKFRLYDGSD---------IGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA 58 (113)
T ss_pred cEEEEEEccCCCc---------cCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence 6889999986543 44567889999999999999 556677 999999996
No 34
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.16 E-value=2.4e-06 Score=69.83 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=37.1
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhC---CCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIG---MPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~G---IP~~kQkL~~~ 97 (99)
++|+++.|+|+.++||++||++|++..| +++++|||+|.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~ 49 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS 49 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC
Confidence 5699999999999999999999999999 99999999996
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.89 E-value=6.4e-05 Score=49.16 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=32.0
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
.......++++.||+.||++|+..+|++++.|||.+
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l 47 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQL 47 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEE
Confidence 445666799999999999999999999999999964
No 36
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=97.88 E-value=1e-05 Score=53.04 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=26.4
Q ss_pred Eec-CCccHHHHHHHHHHHh--CCC-CCceEEEee
Q psy10057 67 SLD-LRTSVTALKSQIHDLI--GMP-AGKQKLHLD 97 (99)
Q Consensus 67 ~v~-~tdTV~~LK~kI~e~~--GIP-~~kQkL~~~ 97 (99)
+|. .++||++||++|+++. |++ +++|||+|+
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~ 49 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHC 49 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence 444 6799999999999995 575 999999996
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=97.79 E-value=0.00011 Score=45.50 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=41.4
Q ss_pred eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC-CceEEEee
Q psy10057 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA-GKQKLHLD 97 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~-~kQkL~~~ 97 (99)
|+|.|+.. +|+.+.+.|..+++++.|+++++++.|++. ++.+|.|+
T Consensus 1 I~i~v~~~----------~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd 47 (72)
T PF11976_consen 1 ITIKVRSQ----------DGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD 47 (72)
T ss_dssp EEEEEEET----------TSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET
T ss_pred CEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC
Confidence 56777764 488999999999999999999999999999 99999986
No 38
>KOG0001|consensus
Probab=97.77 E-value=7e-05 Score=44.10 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=36.8
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+.|+++.+.+..+++|..+|.+|+...|++..+|+|.|+
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~ 45 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFG 45 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEEC
Confidence 569999999999999999999999999999999999875
No 39
>KOG0011|consensus
Probab=97.64 E-value=4.5e-05 Score=62.01 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=39.0
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhC--CCCCceEEEeec
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIG--MPAGKQKLHLDV 98 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~G--IP~~kQkL~~~~ 98 (99)
+|.|++++++|.+++||..||.+|+...| .|+++|||+|..
T Consensus 7 tL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~G 49 (340)
T KOG0011|consen 7 TLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSG 49 (340)
T ss_pred eccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecc
Confidence 58899999999999999999999999999 999999999974
No 40
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.63 E-value=0.00013 Score=40.10 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=35.4
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+...+.+..++||+.||++|.++.|++++.|+|.++
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN 43 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC
Confidence 58899999999999999999999999999999999875
No 41
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.51 E-value=0.00021 Score=46.81 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
.+.|+|+.|+ | +..|++++++|++.|+++|++.++++.+.|.|+.
T Consensus 4 ~milRvrS~d----------G-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~ 48 (80)
T PF11543_consen 4 SMILRVRSKD----------G-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSK 48 (80)
T ss_dssp --EEEEE-SS----------E-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BS
T ss_pred cEEEEEECCC----------C-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEe
Confidence 5789999885 4 7788999999999999999999999999998854
No 42
>PLN02560 enoyl-CoA reductase
Probab=97.32 E-value=0.00034 Score=55.87 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=34.3
Q ss_pred cCcEE---EEEecCCccHHHHHHHHHHHhCC-CCCceEEEee
Q psy10057 60 NGQTL---SLSLDLRTSVTALKSQIHDLIGM-PAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti---~l~v~~tdTV~~LK~kI~e~~GI-P~~kQkL~~~ 97 (99)
+|+.+ +|++++++||++||.+|+++.|+ ++++|||.+.
T Consensus 9 ~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~ 50 (308)
T PLN02560 9 SGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLP 50 (308)
T ss_pred CCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEe
Confidence 47777 79999999999999999999996 8999999974
No 43
>KOG0010|consensus
Probab=97.10 E-value=0.00082 Score=57.07 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=40.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|.|+|..|++ ...|.|..+.||..||+.|..++++++++|+|+|+
T Consensus 15 ~irV~Vkt~~d-----------k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfa 60 (493)
T KOG0010|consen 15 LIRVTVKTPKD-----------KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYA 60 (493)
T ss_pred eeEEEEecCCc-----------ceeEecccchHHHHHHHHHHHhcCCChhHeeeeec
Confidence 37777777753 56789999999999999999999999999999996
No 44
>KOG4248|consensus
Probab=96.45 E-value=0.003 Score=57.84 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=38.3
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+.++.++.+...+||.++|+.|.+..+|+.++|||+|+
T Consensus 9 tld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~ 48 (1143)
T KOG4248|consen 9 TLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQ 48 (1143)
T ss_pred ecccceeEEEechHHHHHHHHHHHHHhcccccccceeeec
Confidence 4789999999999999999999999999999999999996
No 45
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=95.73 E-value=0.036 Score=36.91 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=32.6
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+...++.|.+..+|..||++|...-|++- .|||+|.
T Consensus 10 ~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQ 45 (80)
T cd01811 10 YSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQ 45 (80)
T ss_pred CCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEee
Confidence 55788999999999999999999999876 9999985
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=95.56 E-value=0.018 Score=40.94 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=31.6
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.++-+++..++||-+||.+|+..+..|++.|||+
T Consensus 12 TTiF~dakes~tVlelK~~iegI~k~pp~dQrL~ 45 (119)
T cd01788 12 TTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY 45 (119)
T ss_pred eEEEeecCCcccHHHHHHHHHHHhcCChhHheee
Confidence 3677799999999999999999999999999997
No 47
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.49 E-value=0.032 Score=37.15 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=34.4
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++ +|.|.|+...+.+.|+++|.+++++|++.-+|+|.
T Consensus 10 ~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYk 46 (80)
T cd06406 10 KY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYK 46 (80)
T ss_pred EE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEec
Confidence 35 99999999999999999999999999999999984
No 48
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.41 E-value=0.11 Score=33.13 Aligned_cols=45 Identities=9% Similarity=0.162 Sum_probs=35.8
Q ss_pred CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057 40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94 (99)
Q Consensus 40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL 94 (99)
+..+|+|++|| |+.+...+..++||++|.+-|....+.....-.|
T Consensus 3 ~~~~I~iRlPd----------G~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L 47 (80)
T smart00166 3 DQCRLQIRLPD----------GSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTL 47 (80)
T ss_pred CeEEEEEEcCC----------CCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEE
Confidence 36899999996 8899999999999999999996655554444333
No 49
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.23 E-value=0.065 Score=34.76 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=32.7
Q ss_pred CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC
Q psy10057 40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG 86 (99)
Q Consensus 40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G 86 (99)
|..+|+|++|| |+.+...+..++||++|.+-|....+
T Consensus 3 p~t~iqiRlpd----------G~r~~~rF~~~~tv~~l~~~v~~~~~ 39 (79)
T cd01770 3 PTTSIQIRLAD----------GKRLVQKFNSSHRVSDVRDFIVNARP 39 (79)
T ss_pred CeeEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHHhCC
Confidence 36889999995 88999999999999999999998653
No 50
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.89 E-value=0.093 Score=33.12 Aligned_cols=37 Identities=11% Similarity=0.316 Sum_probs=32.0
Q ss_pred CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC
Q psy10057 40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG 86 (99)
Q Consensus 40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G 86 (99)
|..+|+|++|| |+.+...+..++||++|.+-|.....
T Consensus 1 p~t~i~iRlpd----------G~~~~~~F~~~~tl~~l~~fv~~~~~ 37 (77)
T cd01767 1 PTTKIQIRLPD----------GKRLEQRFNSTHKLSDVRDFVESNGP 37 (77)
T ss_pred CcEEEEEEcCC----------CCEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 35889999996 88899999999999999999986643
No 51
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=94.70 E-value=0.22 Score=31.35 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
.++|+|++|+ |+.+...+..++||..|.+-|....+.+..
T Consensus 6 ~~~I~vRlpd----------G~~l~~~F~~~~tl~~l~~~v~~~~~~~~~ 45 (82)
T PF00789_consen 6 VVRIQVRLPD----------GSRLQRRFPKSDTLQDLYDFVESQLFSPEE 45 (82)
T ss_dssp EEEEEEEETT----------STEEEEEEETTSBHHHHHHHHHHHHHCTTT
T ss_pred EEEEEEECCC----------CCEEEEEECCcchHHHHHHHHHHhcCCCCC
Confidence 7899999995 889999999999999999999988765554
No 52
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.53 E-value=0.25 Score=32.53 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
+|+ .++|.|++|+ |+.+.-.+..++||+.|.+-|+.. +-.+..-.|++
T Consensus 1 ~~~-~~~I~iRlp~----------G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t 48 (85)
T cd01774 1 APD-TVKIVFKLPN----------GTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVT 48 (85)
T ss_pred CCc-eEEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEec
Confidence 466 8999999996 889999999999999999999754 33445555544
No 53
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=94.44 E-value=0.19 Score=35.65 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMP 88 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP 88 (99)
++.++|.+|+ |.+.++.++.++||.+|-+.|..+.||.
T Consensus 3 ~~~~~V~l~d----------g~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLD----------GTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecC----------CCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 7999999985 7799999999999999999999999994
No 54
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=93.93 E-value=0.12 Score=34.87 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=39.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL 94 (99)
+|.|.|.+|| |+++++++..+|+.+.|=+.+..+.|||.+-++.
T Consensus 1 ~V~L~V~Lpd----------g~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 1 DVELRIALPD----------KATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred CeEEEEEccC----------CCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 4789999996 8999999999999999999999999999876654
No 55
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=93.90 E-value=0.23 Score=34.39 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=35.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCc-EEEEEecCCccHHHHHHHHHHHh--C-----CCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQ-TLSLSLDLRTSVTALKSQIHDLI--G-----MPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gq-ti~l~v~~tdTV~~LK~kI~e~~--G-----IP~~kQkL~~~ 97 (99)
.|.|+..+. +|. +..+.+++++||++||++|...- + ..++..||+|.
T Consensus 2 ~i~lkf~l~----------~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~ 56 (111)
T PF13881_consen 2 KIELKFRLA----------DGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA 56 (111)
T ss_dssp SEEEEEEET----------TS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET
T ss_pred eEEEEEEEe----------CCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC
Confidence 477888876 377 88899999999999999999754 1 34567888874
No 56
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=93.86 E-value=0.076 Score=33.67 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.6
Q ss_pred cCCccHHHHHHHHHHHhC-CCCCceEEEe
Q psy10057 69 DLRTSVTALKSQIHDLIG-MPAGKQKLHL 96 (99)
Q Consensus 69 ~~tdTV~~LK~kI~e~~G-IP~~kQkL~~ 96 (99)
+++.||++||..|+...+ +++++|||.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~ 48 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRL 48 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEe
Confidence 478899999999999986 6899999964
No 57
>KOG1872|consensus
Probab=93.48 E-value=0.083 Score=44.95 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=34.0
Q ss_pred cCcEEEEE-ecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 60 NGQTLSLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 60 ~Gqti~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
.|+...++ ++..+|+..+|+++...+|+++++||+.+
T Consensus 11 ~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~v 48 (473)
T KOG1872|consen 11 GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMV 48 (473)
T ss_pred cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEE
Confidence 38888887 89999999999999999999999999876
No 58
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=93.04 E-value=0.33 Score=36.06 Aligned_cols=31 Identities=39% Similarity=0.562 Sum_probs=29.0
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCce
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ 92 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQ 92 (99)
.++.+.++.+.||++|+++|.+.++++...|
T Consensus 15 ~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~ 45 (162)
T PF13019_consen 15 PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQ 45 (162)
T ss_pred CeEEeeCCCCCcHHHHHHHHHhhcCCCccce
Confidence 5899999999999999999999999999986
No 59
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=92.75 E-value=0.26 Score=32.70 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=32.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+.|.++...+.++|+++|.+++.++++.-+|+|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 67788899999999999999999999999999985
No 60
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.71 E-value=0.46 Score=29.67 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=33.8
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|.+..+.++...+.++|+++|++++++..+..+|.|.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 37799999999999999999999999998777888774
No 61
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=92.65 E-value=0.62 Score=29.05 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=32.2
Q ss_pred cCcEEE-EEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLS-LSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~-l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|.... +.+..+.+...|+++|.+++|++.+.-+|.|.
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 355666 89998889999999999999999888888774
No 62
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.57 E-value=0.78 Score=29.82 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=36.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.++|+|++|+ |+.+.-....+++++.|.+-|... |.+...-+|.
T Consensus 4 ~~~i~iRlP~----------G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~ 47 (80)
T cd01771 4 ISKLRVRTPS----------GDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLL 47 (80)
T ss_pred eEEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEe
Confidence 6899999996 889999999999999999999764 6666655554
No 63
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.35 E-value=0.43 Score=30.59 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=31.5
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG 86 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G 86 (99)
...|+|++|| |+.+.-.+..++||++|.+-|....+
T Consensus 4 ~~~i~iRlp~----------G~~~~~~F~~~~tl~~v~~fV~~~~~ 39 (79)
T cd01772 4 ETRIQIRLLD----------GTTLKQTFKAREQLAAVRLFVELNTG 39 (79)
T ss_pred EEEEEEECCC----------CCEEEEEeCCCChHHHHHHHHHHcCC
Confidence 4789999996 88999999999999999999986654
No 64
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.37 E-value=0.87 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=32.7
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCC---CceEEEe
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPA---GKQKLHL 96 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~---~kQkL~~ 96 (99)
.|+++-+.+.++..+..|++.|..++|+.. +.-.|.|
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 499999999999999999999999999887 4556666
No 65
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.02 E-value=0.47 Score=29.44 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=28.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMP 88 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP 88 (99)
|||.+.+++|+.+.|+..|=++|.++.||.
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~ 33 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLK 33 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTS
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCC
Confidence 469999999999999999999999999986
No 66
>KOG4495|consensus
Probab=91.00 E-value=0.34 Score=33.82 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=32.3
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
-.+|-++...+.||-+||.+++..+.=|+|.|||+-
T Consensus 11 kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~k 46 (110)
T KOG4495|consen 11 KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYK 46 (110)
T ss_pred ceeEEeecCccccHHHHHHHHHHHHhCCCcchheee
Confidence 347778999999999999999999999999999963
No 67
>KOG3493|consensus
Probab=90.91 E-value=0.14 Score=33.43 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.6
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL 94 (99)
-|+.+.+.+.+.|||+.+|..|+.++|--++|..|
T Consensus 10 LGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl 44 (73)
T KOG3493|consen 10 LGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVL 44 (73)
T ss_pred cCceEEEEeCCcccccCHHHHHHHhhCCChhHhHH
Confidence 48889999999999999999999999988887655
No 68
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.25 E-value=2 Score=28.42 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=39.7
Q ss_pred CCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 39 TPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 39 g~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
||--.|+|++|+ |+.+.-.+..++++..|..-|+. .|.+.+.-+|+-
T Consensus 3 ~~~t~i~vRlP~----------G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t 49 (82)
T cd01773 3 GPKARLMLRYPD----------GKREQIALPEQAKLLALVRHVQS-KGYPNERFELLT 49 (82)
T ss_pred CCeeEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEec
Confidence 346789999996 88999999999999999999988 577878777753
No 69
>KOG0006|consensus
Probab=89.38 E-value=0.59 Score=38.92 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.5
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
..++|+|+.+..|..||+-++.++|+|+++-|.+|+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFa 49 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFA 49 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEe
Confidence 356778889999999999999999999999999996
No 70
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=88.57 E-value=1.6 Score=28.61 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=32.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCC-CceEEEe
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPA-GKQKLHL 96 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~-~kQkL~~ 96 (99)
.+|.++.+.++++.+...|+++|.++.++.. +.-.|.|
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 3578999999999999999999999999865 4555555
No 71
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=88.46 E-value=1.6 Score=26.98 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=30.6
Q ss_pred cCcEEEEEec-CCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 60 NGQTLSLSLD-LRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 60 ~Gqti~l~v~-~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
+|.+..+.+. .+.+..+|+++|.+++++....-+|.|
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y 45 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY 45 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence 3668888888 899999999999999998865555555
No 72
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=86.55 E-value=1.1 Score=30.24 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.1
Q ss_pred EEEEec--CCccHHHHHHHHHHHhC--CCCCceEEEee
Q psy10057 64 LSLSLD--LRTSVTALKSQIHDLIG--MPAGKQKLHLD 97 (99)
Q Consensus 64 i~l~v~--~tdTV~~LK~kI~e~~G--IP~~kQkL~~~ 97 (99)
+.|++. .+.||..||..|.+..+ ..-..+||+|+
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~ 51 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYA 51 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeec
Confidence 455555 88999999999999994 44456777775
No 73
>smart00455 RBD Raf-like Ras-binding domain.
Probab=84.20 E-value=4.5 Score=25.62 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=36.6
Q ss_pred EEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 44 FNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 44 i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
++|-+|| |+...+.+-++.||.++=++|.++.|+.++.-.+..
T Consensus 2 ~~v~LP~----------~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~ 44 (70)
T smart00455 2 CKVHLPD----------NQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRL 44 (70)
T ss_pred eEEECCC----------CCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5677875 899999999999999999999999999877665543
No 74
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=83.45 E-value=4.5 Score=27.38 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=34.3
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
..|.+..+.|+-+.+..+|++++.+..++..+ ..|.|.
T Consensus 20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 57999999999999999999999999999887 777774
No 75
>KOG4250|consensus
Probab=83.22 E-value=1.7 Score=38.92 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=34.4
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+..+.+-+++..|+.+++++|+..+|||.+.|-|.|+
T Consensus 324 ~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e 360 (732)
T KOG4250|consen 324 ATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFE 360 (732)
T ss_pred ceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeee
Confidence 5678888899999999999999999999999999987
No 76
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=83.17 E-value=8.7 Score=24.25 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057 43 TFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94 (99)
Q Consensus 43 ~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL 94 (99)
.+.|-+|| ||...+.+-+..||.+.=+++-++-|+.++.-.+
T Consensus 2 ~~~v~LP~----------~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V 43 (71)
T PF02196_consen 2 TCRVHLPN----------GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDV 43 (71)
T ss_dssp EEEEEETT----------TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEE
T ss_pred eEEEECCC----------CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEE
Confidence 46889996 8899999999999999999999999988876443
No 77
>KOG1769|consensus
Probab=81.47 E-value=8.8 Score=26.53 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
-|+|+|.= + +|.++.+.|..+.+...|..-..++.|+..+.-|+.|+
T Consensus 20 hi~LKV~g---q-------d~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFd 66 (99)
T KOG1769|consen 20 HINLKVKG---Q-------DGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFD 66 (99)
T ss_pred eEEEEEec---C-------CCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEEC
Confidence 48888773 2 38899999999999999999999999999999999986
No 78
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=80.22 E-value=9.6 Score=25.52 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=26.9
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMP 88 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP 88 (99)
+|.++.+.|+++-+...|.++|.++.|+.
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47799999999999999999999999994
No 79
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=78.86 E-value=8.6 Score=24.66 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=36.7
Q ss_pred EEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 44 FNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 44 i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
++|.+|| |+...+.|.+..||.++=+++.++-|+.++.-.|.+
T Consensus 2 ~~V~LPn----------g~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~ 44 (72)
T cd01760 2 CRVYLPN----------GQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFL 44 (72)
T ss_pred EEEECcC----------CCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5788885 889999999999999999999999999887665543
No 80
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=77.66 E-value=5.8 Score=25.07 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=27.6
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+...+.|.++.++.+|=+....++|+.+++=.|.|+
T Consensus 5 ~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~ 42 (65)
T PF11470_consen 5 NFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHN 42 (65)
T ss_dssp TS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEET
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEEC
Confidence 58899999999999999999999999999997777664
No 81
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=74.46 E-value=4 Score=30.61 Aligned_cols=32 Identities=9% Similarity=0.283 Sum_probs=23.0
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
+.-|--..+-|.+.++++++|+||+.++|++-
T Consensus 129 ~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 129 RTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp -EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred ccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 56677778888999999999999999999874
No 82
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=74.17 E-value=12 Score=24.92 Aligned_cols=38 Identities=11% Similarity=0.335 Sum_probs=28.6
Q ss_pred ccCcEEEEEecC-----CccHHHHHHHHHHHhCCCC-CceEEEe
Q psy10057 59 LNGQTLSLSLDL-----RTSVTALKSQIHDLIGMPA-GKQKLHL 96 (99)
Q Consensus 59 L~Gqti~l~v~~-----tdTV~~LK~kI~e~~GIP~-~kQkL~~ 96 (99)
.+|-++-+.++. +.+...|+++|.+.+.|+. ..-.|.|
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y 50 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY 50 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 346677777774 5799999999999999987 3434444
No 83
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=72.16 E-value=12 Score=24.74 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=27.2
Q ss_pred ccCcEEEEEecC--CccHHHHHHHHHHHhCCC
Q psy10057 59 LNGQTLSLSLDL--RTSVTALKSQIHDLIGMP 88 (99)
Q Consensus 59 L~Gqti~l~v~~--tdTV~~LK~kI~e~~GIP 88 (99)
.+|.++.+.+++ +-+..+|++.|..+.++.
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 468899999998 669999999999999998
No 84
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.15 E-value=11 Score=32.75 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=31.9
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK 91 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k 91 (99)
+++|+|.+-+. ++..+.+.|--.|||+.+|+||-+.. +.|.++
T Consensus 189 ~ltl~v~~~~~--------~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~ 233 (539)
T PF08337_consen 189 TLTLNVVPQEE--------GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQ 233 (539)
T ss_dssp EEEEEEECTTT--------SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGG
T ss_pred EEEEEEEecCC--------CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCC
Confidence 67788763321 24458899999999999999999986 677665
No 85
>KOG0013|consensus
Probab=69.72 E-value=4.8 Score=31.52 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=34.2
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++..+.+.+...|||..+|.+++.+.|+.+.-|+..|.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~S 192 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFS 192 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeecc
Confidence 47788889999999999999999999999999998774
No 86
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=69.02 E-value=13 Score=24.90 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=31.9
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
++|-+..+.++-.-+-..|++||...+.+|..+--+.|
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 56778888888888999999999999999987655544
No 87
>KOG4572|consensus
Probab=63.35 E-value=10 Score=35.46 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=32.2
Q ss_pred cCcEEEEEec-CCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 60 NGQTLSLSLD-LRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 60 ~Gqti~l~v~-~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
.|+++++++. .+.|+..||..|+.+.|+....|-|.-
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~ 40 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLD 40 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeee
Confidence 5999999998 567999999999999999988877653
No 88
>KOG2689|consensus
Probab=61.20 E-value=15 Score=29.78 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMP 88 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP 88 (99)
.-+|+|++|+ |+|++.++....+...|+.-|....|..
T Consensus 210 ~crlQiRl~D----------G~Tl~~tF~a~E~L~~VR~wVd~n~~~~ 247 (290)
T KOG2689|consen 210 QCRLQIRLPD----------GQTLTQTFNARETLAAVRLWVDLNRGDG 247 (290)
T ss_pred ceEEEEEcCC----------CCeeeeecCchhhHHHHHHHHHHhccCC
Confidence 4789999884 9999999999999999999999887643
No 89
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=59.76 E-value=28 Score=23.40 Aligned_cols=33 Identities=9% Similarity=0.280 Sum_probs=26.1
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
..++..+..+|||+.|...+.+.+.| ...-||.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW 46 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLW 46 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-Cccceeh
Confidence 47888999999999999999999999 5566774
No 90
>KOG3439|consensus
Probab=56.86 E-value=24 Score=25.07 Aligned_cols=34 Identities=3% Similarity=0.112 Sum_probs=30.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
.-...|++++|++.+-..|...++++++.|-..|
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflY 79 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLY 79 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEE
Confidence 3456889999999999999999999999998776
No 91
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=55.72 E-value=12 Score=24.95 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=34.8
Q ss_pred eCCCCCCCCCccc-CcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 48 VPNMTDKPEWKLN-GQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 48 ~P~~~~k~ewkL~-Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
-|-..+|+-.-+. ...+++.|+...|=.++|+-|+..+|+.+.+
T Consensus 6 ~P~~TEKs~~~~e~~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~ 50 (92)
T PRK05738 6 RPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVES 50 (92)
T ss_pred ccccCHHHHHhHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceeE
Confidence 3444555555555 5799999999999999999999999987754
No 92
>KOG2086|consensus
Probab=52.75 E-value=41 Score=28.27 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=37.8
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh-CCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI-GMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~-GIP~~kQkL~~~ 97 (99)
.-+|+|.+.| |.-+.+.+..+.||+.||.-|...- |++.+-+-|.++
T Consensus 305 tTsIQIRLan----------G~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~ 352 (380)
T KOG2086|consen 305 TTSIQIRLAN----------GTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMA 352 (380)
T ss_pred cceEEEEecC----------CceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeec
Confidence 6788898875 7778889999999999999998876 566666777654
No 93
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=52.15 E-value=61 Score=21.82 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=35.0
Q ss_pred CCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHH
Q psy10057 27 LIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDL 84 (99)
Q Consensus 27 L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~ 84 (99)
..||.-+.....+ .+.|.|...+. -+..++.++.++++.+|-+.+-.+
T Consensus 4 ~~p~~~~~k~~~~-~i~v~i~~~~~---------~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 4 SLPEPLPLKTIAN-KILIVVHLEKD---------QQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred ccCcchhccccCC-eEEEEEEEccC---------ceeEEEEECCCCCHHHHHHHHHHH
Confidence 3455555544556 78888888653 346899999999999998877766
No 94
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=50.99 E-value=25 Score=22.99 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=18.2
Q ss_pred EEEEecCCccHHHHHHHHHHHh
Q psy10057 64 LSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 64 i~l~v~~tdTV~~LK~kI~e~~ 85 (99)
|+++++.++|+++||+.+-++.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 6889999999999999877664
No 95
>KOG3784|consensus
Probab=50.16 E-value=38 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.516 Sum_probs=34.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMP 88 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP 88 (99)
-|++.|.+|| |+.+++++..++|-+.+=.-|+.+.|++
T Consensus 107 ~v~l~v~lpn----------g~~i~i~~~~s~tt~~vl~~v~~kl~l~ 144 (407)
T KOG3784|consen 107 EVELDVFLPN----------GEKITINCLVSDTASLVLKSVCRKLGLP 144 (407)
T ss_pred eeEEEEEccC----------CceEEEEEEecccHHHHHHHHHhhcCCc
Confidence 4899999974 8999999999999999889999999998
No 96
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=49.40 E-value=46 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=28.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
++...+|.|..++|+.+|=..+.+++|+..+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 5778999999999999999999999999865
No 97
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=48.48 E-value=56 Score=21.31 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=32.8
Q ss_pred EEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057 45 NVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94 (99)
Q Consensus 45 ~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL 94 (99)
+|.+|| |+.-.+.+-+..||.++=.++-++-|+..+--.+
T Consensus 3 rV~LPd----------g~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~v 42 (73)
T cd01817 3 RVILPD----------GSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDL 42 (73)
T ss_pred EEECCC----------CCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEE
Confidence 466775 8888999999999999999999999987665433
No 98
>COG3697 CitX Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) [Coenzyme metabolism / Lipid metabolism]
Probab=47.35 E-value=19 Score=27.35 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.9
Q ss_pred HHHHhhCCCCceEEEEEeCCC
Q psy10057 31 QVFLSKMATPNVTFNVVVPNM 51 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~ 51 (99)
.+||.+|++|-|+|+|..|..
T Consensus 29 ~~~L~~~~~pLvSfT~~aPGp 49 (182)
T COG3697 29 REWLKRYPLPLVSFTVNAPGP 49 (182)
T ss_pred HHHHHhCCCCeEEEEEecCCc
Confidence 489999999999999999964
No 99
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=47.34 E-value=66 Score=19.75 Aligned_cols=45 Identities=7% Similarity=0.066 Sum_probs=33.2
Q ss_pred eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCce
Q psy10057 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ 92 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQ 92 (99)
..|+|-..+... .....+|.|..++|+.+|=..+.+++||..+-+
T Consensus 3 ~~lrVy~~~~~~------~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~ 47 (93)
T PF00788_consen 3 GVLRVYDGDGSP------GSTYKTIKVSSSTTAREVIEMALEKFGLAEDPS 47 (93)
T ss_dssp EEEEEEETTSSS------CCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGG
T ss_pred eEEEEEcCCCCC------CccEEEEEECCCCCHHHHHHHHHHHhCCCCCCC
Confidence 456777664321 124889999999999999999999999944433
No 100
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=45.84 E-value=28 Score=22.93 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEecCCccHHHHHHHHHHHh-CCC
Q psy10057 64 LSLSLDLRTSVTALKSQIHDLI-GMP 88 (99)
Q Consensus 64 i~l~v~~tdTV~~LK~kI~e~~-GIP 88 (99)
+.++|..+.|++++|+.+-+.. .+|
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~P 27 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKMP 27 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhCC
Confidence 6789999999999999886664 344
No 101
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=45.47 E-value=86 Score=20.58 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=29.5
Q ss_pred CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHH
Q psy10057 37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDL 84 (99)
Q Consensus 37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~ 84 (99)
.++ .+.|+|...+ ++..++|.++.++|++.|-+.+..+
T Consensus 13 ~~~-~i~v~v~~~~---------~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 13 QNN-KIKVSVHFEN---------SQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp SSS-EEEEEEEETT---------CSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred CCC-eEEEEEEEcC---------CCcEEEEEECCCCCHHHHHHHHHHH
Confidence 455 7888888873 3678999999999999988877666
No 102
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=44.06 E-value=78 Score=19.66 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=27.8
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
.|...+|.|..++|..+|=..+.+++|+..+
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~ 41 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDD 41 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCC
Confidence 4778999999999999999999999998843
No 103
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=42.81 E-value=8.1 Score=31.49 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHH----------HhCCCCCceE-----EEee
Q psy10057 71 RTSVTALKSQIHD----------LIGMPAGKQK-----LHLD 97 (99)
Q Consensus 71 tdTV~~LK~kI~e----------~~GIP~~kQk-----L~~~ 97 (99)
+.+|.+||+.+++ .+++|.+|.| |.|.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~ 144 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYK 144 (309)
T ss_dssp ------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheec
Confidence 6899999999999 8899999999 8875
No 104
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=42.57 E-value=1.2e+02 Score=21.47 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=38.0
Q ss_pred HHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 33 FLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 33 fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
-.++||+ -|.|-|.=- .. . +.+..-+=|+.+.||+.+..-|..+.++.+++
T Consensus 20 Ir~kyPd-rIPVIvEk~--~~-s----~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k 70 (121)
T PTZ00380 20 LQAKYPG-HVAVVVEAA--EK-A----GSKVHFLALPRDATVAELEAAVRQALGTSAKK 70 (121)
T ss_pred HHHHCCC-ccEEEEeec--CC-C----CCceEEEEcCCCCcHHHHHHHHHHHcCCChhH
Confidence 4568999 787777642 21 1 13444446999999999999999999999998
No 105
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=41.55 E-value=9.5 Score=25.18 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=27.2
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
...++.|++..|=-++|+-|+..+|+.+.+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~ 50 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKK 50 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeE
Confidence 689999999999999999999999987654
No 106
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=40.95 E-value=44 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=19.4
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
+.+.+-|+.+.||++|-+.++.+.+++.+
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~ 62 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEE 62 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcC
Confidence 57888999999999999999999998776
No 107
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=37.09 E-value=83 Score=21.03 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.2
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
+|.+.+|.|+.+.|++.+=+.+.++.+...
T Consensus 11 Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~ 40 (85)
T cd01787 11 DGASKSLEVDERMTARDVCQLLVDKNHCQD 40 (85)
T ss_pred CCCeeEEEEcCCCcHHHHHHHHHHHhCCCC
Confidence 488999999999999999999999887543
No 108
>KOG4583|consensus
Probab=36.72 E-value=26 Score=29.41 Aligned_cols=49 Identities=33% Similarity=0.420 Sum_probs=37.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh-CCCC-CceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI-GMPA-GKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~-GIP~-~kQkL~~~ 97 (99)
+|++-|..||-- =+.++|++++.-||+.||..++..+ +=|. -.|||+|.
T Consensus 9 ~v~lliks~Nq~--------y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYs 59 (391)
T KOG4583|consen 9 PVTLLIKSPNQS--------YKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYS 59 (391)
T ss_pred ceEEEecCCCcc--------ccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhh
Confidence 799999999853 3468888899999999999988776 3222 35777764
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=36.13 E-value=93 Score=19.39 Aligned_cols=29 Identities=28% Similarity=0.615 Sum_probs=22.5
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
|+.+-+.++..-+|+.|-..|.+..+++.
T Consensus 12 ~~~~Dl~lP~~vpv~~li~~l~~~~~~~~ 40 (79)
T PF08817_consen 12 GRQVDLALPADVPVAELIPELVELLGLPG 40 (79)
T ss_dssp --EEEEEEETTSBTTHHHHHHHHHS---S
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcc
Confidence 78999999999999999999999988644
No 110
>PF07984 DUF1693: Domain of unknown function (DUF1693) ; InterPro: IPR012937 This domain occurs in many hypothetical proteins. It also occurs in some prion-like proteins.
Probab=34.77 E-value=38 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=32.7
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+--+|+|.+.+-|..|++++.++ ||++..-||-.+
T Consensus 22 rgnfPTl~v~l~~LI~~Vr~~L~~~-GI~VkdVRLNGs 58 (320)
T PF07984_consen 22 RGNFPTLEVRLKDLIQVVRDRLEER-GIPVKDVRLNGS 58 (320)
T ss_pred CCCceeEEeeHHHHHHHHHHHHHHc-CCCccceEEecc
Confidence 4778999999999999999999988 999999888543
No 111
>CHL00030 rpl23 ribosomal protein L23
Probab=34.77 E-value=42 Score=22.56 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=34.3
Q ss_pred CCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 49 PNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 49 P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
|-..+|+-..+..+.+++.|+...+=.++|+-|+..+|+-+.+
T Consensus 7 PivTEKs~~l~e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~ 49 (93)
T CHL00030 7 PVFTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIA 49 (93)
T ss_pred ceeCHHHHHhhHCCEEEEEECCCCCHHHHHHHHHHHhCCeEEE
Confidence 4455666666667899999999999999999999999865543
No 112
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=33.84 E-value=1.9e+02 Score=22.15 Aligned_cols=57 Identities=7% Similarity=0.178 Sum_probs=37.3
Q ss_pred HHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 31 QVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.+|+..--. .|.|.+.-=..+. +..+++++....|-..|-++|.+++|+.+.+-||.
T Consensus 167 ~~Yy~~l~n-rv~V~f~~~~~~~-------~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 167 KEYYDFLYN-RVEVEFKPKDNPN-------DPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHH-EEEEEEEETTSTT----------EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHHhC-eEEEEEEECCCCC-------CCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 455554444 4666665433222 23888999999999999999999999999988874
No 113
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=33.28 E-value=1.2e+02 Score=23.11 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=33.7
Q ss_pred EEEEeCCCCCCCCCcccCcEEEE---------EecCCccHHHHHHHHHHHhCCCC
Q psy10057 44 FNVVVPNMTDKPEWKLNGQTLSL---------SLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 44 i~V~~P~~~~k~ewkL~Gqti~l---------~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
|+|....+....++-.||+++++ .++...||..+=+.+.+++||..
T Consensus 53 lr~~~~gd~~~~~~~yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~ 107 (214)
T PF09865_consen 53 LRIDRRGDGADREFYYDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIEL 107 (214)
T ss_pred EEEEEEcCCcceEEEECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCc
Confidence 44555555556688899999998 23445789988899999999653
No 114
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.90 E-value=76 Score=24.45 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCCCCCCcccCcEEE---EEecCCccHHHHHHHHHHHh
Q psy10057 42 VTFNVVVPNMTDKPEWKLNGQTLS---LSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~Gqti~---l~v~~tdTV~~LK~kI~e~~ 85 (99)
.|+...--.+++ |-.|. +.+...||.++|.+||++.+
T Consensus 134 ~TVH~V~e~vD~-------GpII~Q~~Vpv~~~Dt~etl~~RV~~~E 173 (200)
T COG0299 134 CTVHFVTEGVDT-------GPIIAQAAVPVLPGDTAETLEARVLEQE 173 (200)
T ss_pred cEEEEEccCCCC-------CCeEEEEeeeecCCCCHHHHHHHHHHHH
Confidence 566665544443 54432 35568899999999999876
No 115
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=31.86 E-value=2e+02 Score=22.40 Aligned_cols=58 Identities=24% Similarity=0.189 Sum_probs=43.2
Q ss_pred CCCcHHHHHhhCCCCceEEEEEeCCC---CCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh
Q psy10057 26 SLIPEQVFLSKMATPNVTFNVVVPNM---TDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 26 ~L~pE~~fl~~~pg~~v~i~V~~P~~---~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
--..|-+|+..+-| ..|+|.=|.. .--+|=.|+....-+.+..+.|+++|.++|....
T Consensus 165 Rf~nEie~lre~Gg--~iV~V~R~~~~vd~H~SE~gLd~~~~D~vI~NdGtleeL~~qV~~ll 225 (227)
T PHA02575 165 RQDHEMELVRAMGA--TVIHVVRDTGLVDTHSTEAGLPIQPGDIVITNNGTLEELKSKILNLI 225 (227)
T ss_pred CChhHHHHHHHcCC--EEEEEecCCCCccCCCCccCCCCCCCCEEEEcCCCHHHHHHHHHHHh
Confidence 35569999999888 6777776652 2234666777777778888899999999987653
No 116
>KOG3157|consensus
Probab=31.75 E-value=28 Score=27.48 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHhCCCCCceEEEeecC
Q psy10057 73 SVTALKSQIHDLIGMPAGKQKLHLDVS 99 (99)
Q Consensus 73 TV~~LK~kI~e~~GIP~~kQkL~~~~~ 99 (99)
+...||+.|.+++|||+++-.|+.|.|
T Consensus 187 ~L~~~r~~ic~~lg~~~dq~eLSMGMS 213 (244)
T KOG3157|consen 187 VLVKLRESICKKLGIPADQVELSMGMS 213 (244)
T ss_pred HHHHHHHHHHHHhCCChHHhhhhcccc
Confidence 467899999999999999988887754
No 117
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=31.74 E-value=23 Score=22.53 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=11.9
Q ss_pred cccCCC---CCCCcHHHHH
Q psy10057 19 KKIRSE---ESLIPEQVFL 34 (99)
Q Consensus 19 Kr~k~e---~~L~pE~~fl 34 (99)
+|.|.+ ++-++|++||
T Consensus 56 ~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 56 KRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred cccccccccCCCCCHHHhC
Confidence 666654 5778899997
No 118
>KOG3206|consensus
Probab=31.68 E-value=60 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.9
Q ss_pred EecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 67 SLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 67 ~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.++.+.||..+|.|+.-.+|.+++..+|.
T Consensus 18 r~~~~ltl~q~K~KLe~~~G~~~~~M~l~ 46 (234)
T KOG3206|consen 18 RLSNSLTLAQFKDKLELLTGTEAESMELE 46 (234)
T ss_pred hcCCcCcHHHHHhhhhhhhCCCccceEEE
Confidence 56678899999999999999999988883
No 119
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=31.55 E-value=64 Score=20.89 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=16.6
Q ss_pred EEEec-CCccHHHHHHHHHHHhCC
Q psy10057 65 SLSLD-LRTSVTALKSQIHDLIGM 87 (99)
Q Consensus 65 ~l~v~-~tdTV~~LK~kI~e~~GI 87 (99)
+|.++ ..-+|++||..|.++.++
T Consensus 13 ~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 13 TITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT-
T ss_pred EEEECCCeeEHHHHHHHHHHHhCC
Confidence 44444 467999999999877655
No 120
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=31.38 E-value=52 Score=24.35 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=35.8
Q ss_pred EeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 47 VVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 47 ~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
.-|-..+|+-..+....++|.|+...+=-.+|.-|+..+|+.+..
T Consensus 8 k~PviTEKs~~l~e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~ 52 (158)
T PRK12280 8 KKPILTEKSYSLMSKNVYTFKVDRRANKIEIKKAVEFIFKVKVLK 52 (158)
T ss_pred hccccCHHHHhhhhCCEEEEEECCCCCHHHHHHHHHHHhCCceEE
Confidence 345556666556666789999999999999999999999987654
No 121
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=30.60 E-value=1.2e+02 Score=20.90 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=28.2
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
+-||.-.++.++++.||++|=..+..+..++.+
T Consensus 9 r~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 9 RSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred ecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 345777899999999999999999999988774
No 122
>KOG1434|consensus
Probab=30.32 E-value=1e+02 Score=25.33 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=35.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
...++||+|-.-+ .+.|+.+-|+-+-|-.+..+|+ |.++.++.++
T Consensus 134 tLcVt~QlPr~~G----g~~Gk~ifIDTEgtFrpdRi~~-IAe~~~~d~d 178 (335)
T KOG1434|consen 134 TLCVTVQLPREMG----GVGGKAIFIDTEGTFRPDRIKD-IAERFKVDPD 178 (335)
T ss_pred EEEEEeecchhhC----CCCceEEEEecCCccchHHHHH-HHHHhCCCHH
Confidence 5788999996533 5789999999999999999976 6677776554
No 123
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme. This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=29.66 E-value=1.5e+02 Score=20.02 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=22.5
Q ss_pred hCCCCceEEEEEeCCCCCCCCCc---ccCcEEEEEe
Q psy10057 36 KMATPNVTFNVVVPNMTDKPEWK---LNGQTLSLSL 68 (99)
Q Consensus 36 ~~pg~~v~i~V~~P~~~~k~ewk---L~Gqti~l~v 68 (99)
..+| .+-+-|.+|..+ ..|+ .+|+.++++|
T Consensus 84 ~~~~-~~~lIvs~~~~~--~~~~a~~~~g~~~~~~v 116 (117)
T cd08072 84 SKTG-LVHIIVGYPYDE--DDWRAYDSDGEPVELEV 116 (117)
T ss_pred hcCC-CEEEEEECcCCC--CCEEEEecCCCEEeeeE
Confidence 4588 788999998632 3555 8899998876
No 124
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=29.34 E-value=33 Score=20.27 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=7.4
Q ss_pred HHHHhhCCC
Q psy10057 31 QVFLSKMAT 39 (99)
Q Consensus 31 ~~fl~~~pg 39 (99)
++||.+||+
T Consensus 31 ~~WL~~~P~ 39 (46)
T PF07533_consen 31 EEWLEEHPG 39 (46)
T ss_dssp HHHHHH-TT
T ss_pred HHHHHHCcC
Confidence 599999999
No 125
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.03 E-value=49 Score=21.51 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=27.4
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCce
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ 92 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQ 92 (99)
+.+++.|+...+=.++|.-|+..+|+.+.+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~V 45 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKV 45 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEE
Confidence 6899999999999999999999999876543
No 126
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=28.67 E-value=52 Score=22.33 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=22.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
.|...++...++++||..++.+.|+.-+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~ 32 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSD 32 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCC
Confidence 67778889999999999999999987554
No 127
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.91 E-value=1.1e+02 Score=24.34 Aligned_cols=60 Identities=17% Similarity=0.363 Sum_probs=39.7
Q ss_pred HHhhCCCCceEEEEEeCCCCCCCCCcccCcE-------EEE--EecCCccHHHHHHHHHHHhCCCCCceE
Q psy10057 33 FLSKMATPNVTFNVVVPNMTDKPEWKLNGQT-------LSL--SLDLRTSVTALKSQIHDLIGMPAGKQK 93 (99)
Q Consensus 33 fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqt-------i~l--~v~~tdTV~~LK~kI~e~~GIP~~kQk 93 (99)
|+++-|. -.||...+-|.-.-.|-+++|.. +++ +.+..--..-+|+.|+.-+|||.+.-|
T Consensus 100 ~~ar~pn-GptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arr 168 (283)
T COG5154 100 MGARIPN-GPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARR 168 (283)
T ss_pred eeccCCC-CCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccc
Confidence 6777887 57777777676444455655544 333 233344566788999999999998644
No 128
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=27.79 E-value=1.8e+02 Score=23.34 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=26.3
Q ss_pred HHHHhhCCCCceEEEEEeCCCCCCCCCcc-------cCcEEEEEec
Q psy10057 31 QVFLSKMATPNVTFNVVVPNMTDKPEWKL-------NGQTLSLSLD 69 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~~~k~ewkL-------~Gqti~l~v~ 69 (99)
.+||+.||. |. +|.-|..++.+...+ -|..+++++.
T Consensus 262 a~~L~~~p~--v~-~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 304 (382)
T TIGR02080 262 VEYLQTQPL--VK-KIYYPGLPDHPGHEIAARQQKGFGAMLSFELK 304 (382)
T ss_pred HHHHHhCCC--ee-EEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence 579999987 54 788888776655442 4668888885
No 129
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=27.33 E-value=72 Score=24.42 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=28.5
Q ss_pred CcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 57 WKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 57 wkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+|.| .-++-|..+++|++|=..|.++.|.|.+..-+.|+
T Consensus 81 q~L~~-iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyE 120 (249)
T PF12436_consen 81 QTLRY-IGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYE 120 (249)
T ss_dssp TEEEE-EEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEE
T ss_pred CEEEE-EeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEE
Confidence 45666 44567899999999999999999999998777775
No 130
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=27.29 E-value=1.3e+02 Score=25.42 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=43.2
Q ss_pred CCCCc--HHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecC---------------------CccHHHHHHHH
Q psy10057 25 ESLIP--EQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDL---------------------RTSVTALKSQI 81 (99)
Q Consensus 25 ~~L~p--E~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~---------------------tdTV~~LK~kI 81 (99)
++++| |+..+-+-.|-.+.|.|.+|.. -..-.|-|+..++.|.. .+|+..||+.|
T Consensus 192 ~~fipgFe~~LvG~k~Ge~k~i~vtFP~d--y~a~~LaGK~a~F~V~vkeVk~~elpEldDEfAk~~~~~~tL~~Lk~~~ 269 (441)
T COG0544 192 GRFIPGFEDQLVGMKAGEEKDIKVTFPED--YHAEELAGKEATFKVKVKEVKKRELPELDDEFAKKLGEEDTLEELKEKL 269 (441)
T ss_pred CCchhhHHhhhccCcCCCeeEEEEEcccc--cchhHhCCCceEEEEEEEEEeecCCCCCCHHHHHhcCccccHHHHHHHH
Confidence 57888 8899999999888999999953 12335888877765532 23788888888
Q ss_pred HHHh
Q psy10057 82 HDLI 85 (99)
Q Consensus 82 ~e~~ 85 (99)
+...
T Consensus 270 r~~l 273 (441)
T COG0544 270 RKNL 273 (441)
T ss_pred HHHH
Confidence 7653
No 131
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=27.10 E-value=1e+02 Score=19.01 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=19.4
Q ss_pred EEEEEecCC-ccHHHHHHHHHHHhC
Q psy10057 63 TLSLSLDLR-TSVTALKSQIHDLIG 86 (99)
Q Consensus 63 ti~l~v~~t-dTV~~LK~kI~e~~G 86 (99)
...++++.. .||..|++.+.++++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p 41 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGP 41 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCc
Confidence 457788765 899999999988874
No 132
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=27.08 E-value=83 Score=27.85 Aligned_cols=48 Identities=8% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCC---------ccHHHHHHHHHHHhCCCCC
Q psy10057 33 FLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLR---------TSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 33 fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~t---------dTV~~LK~kI~e~~GIP~~ 90 (99)
.+....+..|+|+|.-+ +|++..++.... -|++.||.+|++++|+.-+
T Consensus 240 ~~~~~~~~~~~i~~~~~----------~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~~~ 296 (603)
T PRK05841 240 PIDAITNRKLNITIQKE----------DGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLDLN 296 (603)
T ss_pred ccccCCCCeEEEEEecC----------CCcEEEEEEeecCccccCCceeechhhhhhhhhccccccc
Confidence 33333354676666543 377777766544 4789999999999986543
No 133
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=27.00 E-value=93 Score=24.83 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=27.1
Q ss_pred CCcccCcEEEE---------EecCCccHHHHHHHHHHHhCCCCC
Q psy10057 56 EWKLNGQTLSL---------SLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 56 ewkL~Gqti~l---------~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
|--.+|++++| .++.-.||..|=++|.+++||+.-
T Consensus 100 e~~fDGktftl~gknln~YaqieapgTiD~lvdei~~kyG~~lp 143 (262)
T COG3900 100 EFYFDGKTFTLLGKNLNFYAQIEAPGTIDELVDEIDDKYGITLP 143 (262)
T ss_pred EEEecCcEEEEEcCcccceeeccCCCcHHHHHHHHHhhcCCCcc
Confidence 45577888876 345557999999999999998653
No 134
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.35 E-value=54 Score=21.65 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCCCCCCCCccc-CcEEEEEecCCccHHHHHHHHHHHhCCCCCce
Q psy10057 49 PNMTDKPEWKLN-GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ 92 (99)
Q Consensus 49 P~~~~k~ewkL~-Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQ 92 (99)
|-..+|+-+.+. ...+++.|+...+=..+|+-|+..+|+.+.+-
T Consensus 8 PviTEK~~~~~e~~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~V 52 (84)
T PRK14548 8 PLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKV 52 (84)
T ss_pred cccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEE
Confidence 334455555555 46999999999999999999999999876543
No 135
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=26.26 E-value=36 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.8
Q ss_pred CcEEEEEecCCccHHHHHHHHHHH
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDL 84 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~ 84 (99)
+.+.++++...||..+||++|++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
T cd07857 308 QKPFDFSFESEDSMEELRDMIIEE 331 (332)
T ss_pred cccccCCccccccHHHHHHHHhhc
Confidence 667778888999999999999874
No 136
>KOG3076|consensus
Probab=26.11 E-value=94 Score=24.09 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=20.8
Q ss_pred CcEEEE---EecCCccHHHHHHHHHHHhC
Q psy10057 61 GQTLSL---SLDLRTSVTALKSQIHDLIG 86 (99)
Q Consensus 61 Gqti~l---~v~~tdTV~~LK~kI~e~~G 86 (99)
|+.|.. .|..+||+++|.+||++.+.
T Consensus 154 G~iI~q~~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 154 GPIIAQMAVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred CCceEEEeeeecCCCCHHHHHHHHHHHHH
Confidence 666654 55689999999999998874
No 137
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=24.91 E-value=1.3e+02 Score=20.56 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=23.2
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
+|++-+++|.--.+-.+||.++-.++|+.-
T Consensus 9 dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 9 DGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp TTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 599999999988888999999999999876
No 138
>PF13650 Asp_protease_2: Aspartyl protease
Probab=24.90 E-value=42 Score=20.14 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=29.5
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCce
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ 92 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQ 92 (99)
+++|+.+.+-++.-.++..|-..+.++.|+....+
T Consensus 4 ~vng~~~~~liDTGa~~~~i~~~~~~~l~~~~~~~ 38 (90)
T PF13650_consen 4 KVNGKPVRFLIDTGASISVISRSLAKKLGLKPRPK 38 (90)
T ss_pred EECCEEEEEEEcCCCCcEEECHHHHHHcCCCCcCC
Confidence 46799999999988888888899999999877655
No 139
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=24.58 E-value=1.3e+02 Score=18.75 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=19.4
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhC
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIG 86 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~G 86 (99)
+.+.++++ ..||..|.+.|.+++.
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p 39 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYP 39 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCc
Confidence 45777776 7899999999988863
No 140
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=23.97 E-value=47 Score=20.88 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=27.2
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
++|+.+.+-|+.-+++.-|-++...+.|.++
T Consensus 7 Ing~~i~~lvDTGA~~svis~~~~~~lg~~~ 37 (91)
T cd05484 7 VNGKPLKFQLDTGSAITVISEKTWRKLGSPP 37 (91)
T ss_pred ECCEEEEEEEcCCcceEEeCHHHHHHhCCCc
Confidence 5799999999999999999999999998664
No 141
>PF11490 DNA_pol3_a_NII: DNA polymerase III polC-type N-terminus II; InterPro: IPR024754 This domain is found in the N-terminal region of DNA polymerase III polC subunit A. DNA polymerase polC-type III enzyme functions as the 'replicase' in low G + C Gram-positive bacteria []. The domain is also found in chromosomal replication initiator protein DnaA.
Probab=23.63 E-value=93 Score=19.80 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=21.6
Q ss_pred CCCCcccCcEEEEEecCCccHHHHHHH
Q psy10057 54 KPEWKLNGQTLSLSLDLRTSVTALKSQ 80 (99)
Q Consensus 54 k~ewkL~Gqti~l~v~~tdTV~~LK~k 80 (99)
+..|.++|..+.|.|........||.+
T Consensus 23 ~~~~~~~~~~l~i~v~~~~~~~~lk~~ 49 (117)
T PF11490_consen 23 NAKPEFEGNKLIIKVPNEIEAEHLKKK 49 (117)
T ss_pred hCCeEEECCEEEEEeCCHHHHHHHHHh
Confidence 357888999999999877666788876
No 142
>PRK08114 cystathionine beta-lyase; Provisional
Probab=23.22 E-value=2.6e+02 Score=22.98 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=26.7
Q ss_pred HHHHhhCCCCceEEEEEeCCCCCCCCCcc-------cCcEEEEEecC
Q psy10057 31 QVFLSKMATPNVTFNVVVPNMTDKPEWKL-------NGQTLSLSLDL 70 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~~~k~ewkL-------~Gqti~l~v~~ 70 (99)
.+||+.||. | -+|--|..++.|...+ .|..+++++..
T Consensus 274 a~~L~~hp~--V-~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 274 AEWLAEHPE--V-ARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred HHHHHcCCC--E-eEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 479999997 4 3788887776665443 47789998863
No 143
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=23.12 E-value=2.3e+02 Score=18.94 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=27.1
Q ss_pred cEEEEEecCCccHHHHHHHHHHHh-CCCCCceEEEe
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLI-GMPAGKQKLHL 96 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~-GIP~~kQkL~~ 96 (99)
+..++++.+.+++++++++|.+.. .++.+.+-|++
T Consensus 29 ~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivl 64 (116)
T TIGR00824 29 NVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFL 64 (116)
T ss_pred CeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 377888889999999999998876 47666665544
No 144
>PHA03420 E4 protein; Provisional
Probab=23.11 E-value=1e+02 Score=22.30 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=12.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDL 70 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~ 70 (99)
.||++|.|+| |-.++|++.+
T Consensus 117 TVTVTvgv~N----------GpEltLtFql 136 (137)
T PHA03420 117 TVTVTVGVGN----------GPELTLTFQL 136 (137)
T ss_pred EEEEEEecCC----------CCeEEEEEEc
Confidence 5666666665 5556666554
No 145
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=23.06 E-value=51 Score=19.41 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=14.8
Q ss_pred CccHHHHHHHHHHHhCCCCCceE
Q psy10057 71 RTSVTALKSQIHDLIGMPAGKQK 93 (99)
Q Consensus 71 tdTV~~LK~kI~e~~GIP~~kQk 93 (99)
+.|...|+..+++++|+.-..+|
T Consensus 20 ~vT~k~vr~~Le~~~~~dL~~~K 42 (54)
T PF08766_consen 20 TVTKKQVREQLEERFGVDLSSRK 42 (54)
T ss_dssp G--HHHHHHHHHHH-SS--SHHH
T ss_pred HhhHHHHHHHHHHHHCCCcHHHH
Confidence 45788999999999998876543
No 146
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=22.93 E-value=2.1e+02 Score=22.74 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=25.7
Q ss_pred HHHHhhCCCCceEEEEEeCCCCCCCCCc-------ccCcEEEEEec
Q psy10057 31 QVFLSKMATPNVTFNVVVPNMTDKPEWK-------LNGQTLSLSLD 69 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~~~k~ewk-------L~Gqti~l~v~ 69 (99)
.+||+.||+ |. .|..|..++.+... .-|..+++++.
T Consensus 264 a~~L~~~p~--v~-~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 264 AEWLQAQPQ--VQ-AVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHcCCC--cc-EEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 479999997 44 67788776665433 24778888886
No 147
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=22.33 E-value=2.4e+02 Score=18.62 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=28.5
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCce
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ 92 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQ 92 (99)
||+..++.|.+.+|+.++=+-+..+-|+.++.-
T Consensus 8 n~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh 40 (77)
T cd01818 8 DNQPVLTYLRPGMSVEDFLESACKRKQLDPMEH 40 (77)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHhcCCChhHh
Confidence 488999999999999999999888888877654
No 148
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=22.18 E-value=34 Score=24.99 Aligned_cols=16 Identities=19% Similarity=0.357 Sum_probs=11.6
Q ss_pred HHHhhCCCCceEEEEE
Q psy10057 32 VFLSKMATPNVTFNVV 47 (99)
Q Consensus 32 ~fl~~~pg~~v~i~V~ 47 (99)
+|+.+||.|.|.=.|+
T Consensus 108 ~F~KRHPNP~iA~~vq 123 (140)
T PF10952_consen 108 DFMKRHPNPEIARLVQ 123 (140)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 8999999965543333
No 149
>PRK08453 fliD flagellar capping protein; Validated
Probab=22.18 E-value=94 Score=27.88 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=23.3
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHh
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
.|++++|+|....|++.|+++|=+..
T Consensus 136 ~G~~~sIdi~~gtTL~~L~~~INd~~ 161 (673)
T PRK08453 136 QGKDYAIDIKAGMTLGDVAQSITDAT 161 (673)
T ss_pred CCEEEEEEeCCCCcHHHHHHHhcCCC
Confidence 59999999999999999999998543
No 150
>PRK07582 cystathionine gamma-lyase; Validated
Probab=22.06 E-value=2.3e+02 Score=22.46 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=24.8
Q ss_pred HHHHhhCCCCceEEEEEeCCCCCCCCCcc-------cCcEEEEEec
Q psy10057 31 QVFLSKMATPNVTFNVVVPNMTDKPEWKL-------NGQTLSLSLD 69 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~~~k~ewkL-------~Gqti~l~v~ 69 (99)
.+||+.||. |. .|..|..++.+...+ -|..+++++.
T Consensus 258 a~~L~~~p~--v~-~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 258 AELLAGHPA--VR-GVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred HHHHHhCCC--cc-EEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 589999998 43 577777665553222 4778999885
No 151
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=21.48 E-value=53 Score=19.30 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=8.1
Q ss_pred HHHHhhCCC
Q psy10057 31 QVFLSKMAT 39 (99)
Q Consensus 31 ~~fl~~~pg 39 (99)
..||+.||+
T Consensus 29 ~~WL~~~p~ 37 (45)
T smart00592 29 ERWLEENPE 37 (45)
T ss_pred HHHHhcCCC
Confidence 489999999
No 152
>PRK05967 cystathionine beta-lyase; Provisional
Probab=21.11 E-value=1.3e+02 Score=24.75 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=27.2
Q ss_pred HHHHhhCCCCceEEEEEeCCCCCCCCCcc-------cCcEEEEEec
Q psy10057 31 QVFLSKMATPNVTFNVVVPNMTDKPEWKL-------NGQTLSLSLD 69 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~~~k~ewkL-------~Gqti~l~v~ 69 (99)
.+||+.||. |. +|--|..++.|...+ .|..+++++.
T Consensus 274 A~~L~~hp~--v~-~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK05967 274 ARWLEGRPD--VA-RVLHPALPSFPGHEIWKRDFSGASGIFSFVLA 316 (395)
T ss_pred HHHHHhCCC--Cc-EEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 689999998 43 788898777766543 3678888885
No 153
>KOG2507|consensus
Probab=20.92 E-value=1.2e+02 Score=26.31 Aligned_cols=41 Identities=10% Similarity=0.311 Sum_probs=34.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
-+.|+|+||+ |.+++=.++.++-..++|+.|....+|..+.
T Consensus 314 ~~rLqiRLPd----------Gssfte~Fps~~vL~~vr~yvrq~~~i~~g~ 354 (506)
T KOG2507|consen 314 DVRLQIRLPD----------GSSFTEKFPSTSVLRMVRDYVRQNQTIGLGA 354 (506)
T ss_pred eeEEEEecCC----------ccchhhcCCcchHHHHHHHHHHhcccccccc
Confidence 6899999995 8888889999999999999999777765543
No 154
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=20.75 E-value=1.8e+02 Score=17.45 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=18.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHh
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
.+.++++...||.+|.+.+.++.
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~ 39 (80)
T cd00754 17 EEELELPEGATVGELLDALEARY 39 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHC
Confidence 46667766789999999998775
No 155
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.08 E-value=1.6e+02 Score=23.66 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=26.6
Q ss_pred HHHHhhCCCCceEEEEEeCCCCCCCCCcc-------cCcEEEEEec
Q psy10057 31 QVFLSKMATPNVTFNVVVPNMTDKPEWKL-------NGQTLSLSLD 69 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P~~~~k~ewkL-------~Gqti~l~v~ 69 (99)
.+||+.||+ |. .|..|..++.|...+ -|..+++++.
T Consensus 272 a~~L~~~p~--v~-~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 272 AEFLAGHPE--VS-TVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred HHHHHhCCC--ee-EEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 479999998 54 578888776666443 4778999886
Done!