Query psy10057
Match_columns 99
No_of_seqs 150 out of 303
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:48:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1we7_A SF3A1 protein; structur 99.9 7.8E-28 2.7E-32 163.2 10.2 80 17-97 2-81 (115)
2 1we6_A Splicing factor, putati 99.8 1.8E-20 6.1E-25 125.9 8.8 74 16-97 2-77 (111)
3 1wju_A NEDD8 ultimate buster-1 99.2 2.4E-11 8.1E-16 82.1 6.9 51 41-97 15-65 (100)
4 3plu_A Ubiquitin-like modifier 99.2 6.2E-11 2.1E-15 79.5 6.7 39 59-97 29-67 (93)
5 2kjr_A CG11242; UBL, ubiquitin 99.2 1.3E-10 4.3E-15 77.0 7.9 49 41-97 15-63 (95)
6 2ojr_A Ubiquitin; lanthide-bin 99.2 7.1E-11 2.4E-15 79.0 6.4 74 14-97 5-81 (111)
7 3phx_B Ubiquitin-like protein 99.1 2.2E-10 7.4E-15 71.3 7.0 47 41-97 4-50 (79)
8 1uh6_A Ubiquitin-like 5; beta- 99.1 2.7E-10 9.2E-15 76.9 6.1 39 59-97 36-74 (100)
9 2kk8_A Uncharacterized protein 99.1 2E-10 6.7E-15 73.8 5.0 40 58-97 17-56 (84)
10 4eew_A Large proline-rich prot 99.0 6.1E-10 2.1E-14 70.6 7.0 51 36-97 13-63 (88)
11 2kj6_A Tubulin folding cofacto 99.0 7.2E-10 2.5E-14 73.7 7.5 49 41-97 14-62 (97)
12 4dwf_A HLA-B-associated transc 99.0 6.4E-10 2.2E-14 70.7 6.9 39 59-97 13-51 (90)
13 2klc_A Ubiquilin-1; ubiquitin- 99.0 6.2E-10 2.1E-14 73.5 7.0 56 30-97 15-70 (101)
14 4dbg_A Ranbp-type and C3HC4-ty 99.0 5.6E-10 1.9E-14 76.0 6.9 55 37-97 18-72 (105)
15 1v5o_A 1700011N24RIK protein; 99.0 8.6E-10 2.9E-14 72.7 6.8 51 41-97 7-57 (102)
16 1wh3_A 59 kDa 2'-5'-oligoadeny 99.0 1.5E-09 5E-14 68.4 7.5 47 41-97 7-53 (87)
17 2dzm_A FAS-associated factor 1 99.0 4.4E-10 1.5E-14 75.4 5.0 38 59-96 16-53 (100)
18 2hj8_A Interferon-induced 17 k 99.0 1.5E-09 5.1E-14 69.5 7.1 47 41-97 4-50 (88)
19 2dzi_A Ubiquitin-like protein 99.0 2E-09 7E-14 66.5 7.4 47 41-97 7-53 (81)
20 2faz_A Ubiquitin-like containi 99.0 1.4E-09 4.9E-14 67.2 6.5 47 41-97 2-50 (78)
21 2wyq_A HHR23A, UV excision rep 99.0 1.9E-09 6.3E-14 67.5 7.0 49 38-97 3-54 (85)
22 3v6c_B Ubiquitin; structural g 99.0 1.8E-09 6.3E-14 69.2 7.1 47 41-97 17-63 (91)
23 3dbh_I NEDD8; cell cycle, acti 99.0 1.5E-09 5.1E-14 68.2 6.5 47 41-97 12-58 (88)
24 4fbj_B NEDD8; effector-HOST ta 99.0 7.7E-10 2.6E-14 70.9 4.9 39 59-97 8-46 (88)
25 3mtn_B UBA80, ubcep1, ubiquiti 98.9 2.2E-09 7.5E-14 66.7 6.7 47 41-97 3-49 (85)
26 2uyz_B Small ubiquitin-related 98.9 1.9E-09 6.5E-14 66.9 6.0 39 59-97 11-49 (79)
27 3n3k_B Ubiquitin; hydrolase, p 98.9 1.8E-09 6.3E-14 67.2 5.7 39 59-97 11-49 (85)
28 1sif_A Ubiquitin; hydrophobic 98.9 1E-09 3.6E-14 70.3 4.7 40 58-97 16-55 (88)
29 1ndd_A NEDD8, protein (ubiquit 98.9 2.8E-09 9.4E-14 64.7 6.3 38 60-97 9-46 (76)
30 2kd0_A LRR repeats and ubiquit 98.9 1.6E-09 5.6E-14 69.4 5.4 40 58-97 18-57 (85)
31 1wyw_B Ubiquitin-like protein 98.9 2.6E-09 8.8E-14 69.8 6.3 47 41-97 21-67 (97)
32 2kan_A Uncharacterized protein 98.9 4.2E-09 1.4E-13 68.8 7.2 46 41-97 15-60 (94)
33 1wgd_A Homocysteine-responsive 98.9 2.9E-09 9.8E-14 68.6 6.2 47 41-97 7-57 (93)
34 1wjn_A Tubulin-folding protein 98.9 3.6E-09 1.2E-13 69.0 6.7 50 41-97 9-58 (97)
35 4hcn_B Polyubiquitin, ubiquiti 98.9 3.3E-09 1.1E-13 69.1 6.3 47 41-97 22-68 (98)
36 2bwf_A Ubiquitin-like protein 98.9 5.2E-09 1.8E-13 64.1 6.7 38 60-97 12-49 (77)
37 1wy8_A NP95-like ring finger p 98.9 6.4E-09 2.2E-13 65.8 7.3 47 41-97 7-55 (89)
38 2lxa_A Ubiquitin-like protein 98.9 8.9E-10 3E-14 71.9 3.3 39 59-97 9-50 (87)
39 2kdb_A Homocysteine-responsive 98.9 3.3E-09 1.1E-13 70.7 6.2 51 36-97 19-73 (99)
40 1wgg_A Ubiquitin carboxyl-term 98.9 3E-09 1E-13 69.8 5.8 38 60-97 15-53 (96)
41 3a9j_A Ubiquitin; protein comp 98.9 5E-09 1.7E-13 63.5 6.4 38 60-97 9-46 (76)
42 3u30_A Ubiquitin, linear DI-ub 98.9 4.6E-09 1.6E-13 74.0 7.1 55 32-97 12-66 (172)
43 3rt3_B Ubiquitin-like protein 98.8 7.5E-09 2.6E-13 71.7 7.1 39 59-97 89-127 (159)
44 4b6w_A Tubulin-specific chaper 98.8 4.5E-09 1.6E-13 68.2 5.6 38 59-96 12-49 (86)
45 3k9o_B Ubiquitin, UBB+1; E2-25 98.8 7.2E-09 2.5E-13 66.4 6.4 39 59-97 9-47 (96)
46 1v6e_A Cytoskeleton-associated 98.8 6.8E-09 2.3E-13 67.5 6.3 48 41-97 7-54 (95)
47 2kdi_A Ubiquitin, vacuolar pro 98.8 7.4E-09 2.5E-13 69.8 6.6 39 59-97 17-55 (114)
48 3m62_B UV excision repair prot 98.8 2.5E-09 8.4E-14 71.1 4.1 39 59-97 9-47 (106)
49 1v86_A DNA segment, CHR 7, way 98.8 2.7E-09 9.4E-14 69.7 4.1 46 41-97 17-62 (95)
50 1v5t_A 8430435I17RIK protein; 98.8 3.6E-09 1.2E-13 68.3 4.6 36 60-95 15-51 (90)
51 1ttn_A DC-UBP, dendritic cell- 98.8 9.7E-09 3.3E-13 68.0 6.7 47 41-97 23-69 (106)
52 1yx5_B Ubiquitin; proteasome, 98.8 1.1E-08 3.8E-13 66.3 6.4 38 60-97 9-46 (98)
53 3vdz_A Ubiquitin-40S ribosomal 98.8 1.4E-08 4.6E-13 68.0 6.9 39 59-97 43-81 (111)
54 2fnj_B Transcription elongatio 98.8 5E-09 1.7E-13 72.6 4.8 37 61-97 10-47 (118)
55 1wgh_A Ubiquitin-like 3, HCG-1 98.8 1.6E-08 5.3E-13 69.5 7.1 47 41-97 16-70 (116)
56 1wx8_A Riken cDNA 4931431F19; 98.8 1.2E-08 4.1E-13 65.7 6.1 37 61-97 26-62 (96)
57 4a20_A Ubiquitin-like protein 98.8 1.2E-08 4.1E-13 67.9 5.8 49 38-97 17-68 (98)
58 4ajy_B Transcription elongatio 98.8 7.9E-09 2.7E-13 71.8 5.0 37 61-97 11-47 (118)
59 1t0y_A Tubulin folding cofacto 98.8 2.4E-08 8.3E-13 68.0 7.2 48 41-97 6-53 (122)
60 1uel_A HHR23B, UV excision rep 98.7 1.3E-08 4.4E-13 66.0 5.4 38 60-97 9-49 (95)
61 2l7r_A Ubiquitin-like protein 98.7 1E-08 3.5E-13 66.4 4.8 37 61-97 27-63 (93)
62 1yqb_A Ubiquilin 3; structural 98.7 2.4E-08 8.3E-13 65.8 6.5 46 41-97 22-67 (100)
63 1wxv_A BAG-family molecular ch 98.7 3.3E-08 1.1E-12 63.3 6.9 37 61-97 16-57 (92)
64 3u30_A Ubiquitin, linear DI-ub 98.7 2.6E-08 8.7E-13 70.2 6.7 39 59-97 104-142 (172)
65 3rt3_B Ubiquitin-like protein 98.7 1.4E-08 4.7E-13 70.3 5.1 38 59-96 10-48 (159)
66 2gow_A HCG-1 protein, ubiquiti 98.7 2.2E-08 7.6E-13 69.5 6.1 47 41-97 17-71 (125)
67 1j8c_A Ubiquitin-like protein 98.7 5.1E-08 1.7E-12 66.9 7.4 46 41-97 32-77 (125)
68 3m63_B Ubiquitin domain-contai 98.7 6.1E-09 2.1E-13 68.9 2.5 38 60-97 36-73 (101)
69 3b1l_X E3 ubiquitin-protein li 98.1 2E-09 6.8E-14 66.1 0.0 39 59-97 8-46 (76)
70 3l0w_B Monoubiquitinated proli 98.7 2.4E-08 8.2E-13 71.5 5.5 39 59-97 8-46 (169)
71 2xzm_9 RPS31E; ribosome, trans 98.7 2.4E-09 8E-14 79.4 0.0 39 59-97 8-46 (189)
72 1wx7_A Ubiquilin 3; ubiquitin- 98.7 6.2E-08 2.1E-12 63.8 6.9 46 41-97 17-62 (106)
73 3b08_A Polyubiquitin-C, ubiqui 98.7 7.7E-08 2.6E-12 65.1 7.2 39 59-97 84-122 (152)
74 1v2y_A 3300001G02RIK protein; 98.6 2.2E-08 7.6E-13 67.7 4.3 47 41-97 7-68 (105)
75 3q3f_A Ribonuclease/ubiquitin 98.6 3.5E-08 1.2E-12 72.6 4.8 39 59-97 113-151 (189)
76 3b08_A Polyubiquitin-C, ubiqui 98.6 9.7E-08 3.3E-12 64.6 6.5 38 60-97 9-46 (152)
77 1se9_A Ubiquitin family; ubiqu 98.6 3.8E-08 1.3E-12 68.8 4.1 47 41-97 16-70 (126)
78 2kzr_A Ubiquitin thioesterase 98.6 5.6E-08 1.9E-12 62.0 4.4 44 43-97 2-46 (86)
79 3u5e_m 60S ribosomal protein L 98.6 7.5E-09 2.6E-13 70.7 0.0 39 59-97 8-46 (128)
80 1wf9_A NPL4 family protein; be 98.5 1.6E-07 5.6E-12 62.4 5.4 45 42-97 8-53 (107)
81 3ai5_A Yeast enhanced green fl 98.5 4.9E-08 1.7E-12 76.6 3.3 61 26-97 219-279 (307)
82 3shq_A UBLCP1; phosphatase, hy 98.5 1.2E-07 4.1E-12 74.2 5.4 36 60-95 13-48 (320)
83 2daf_A FLJ35834 protein; hypot 98.5 2.7E-07 9.2E-12 64.2 6.5 47 41-97 15-62 (118)
84 3u5c_f 40S ribosomal protein S 98.5 1.6E-08 5.4E-13 72.1 0.0 39 59-97 8-46 (152)
85 1x1m_A Ubiquitin-like protein 98.4 2.9E-07 9.8E-12 61.0 5.3 50 41-97 12-73 (107)
86 2dzj_A Synaptic glycoprotein S 98.4 1.5E-07 5.1E-12 61.0 3.4 38 60-97 19-60 (88)
87 4efo_A Serine/threonine-protei 98.4 3.3E-07 1.1E-11 61.4 5.1 39 60-98 22-60 (94)
88 1wia_A Hypothetical ubiquitin- 98.3 8.8E-07 3E-11 56.9 5.5 44 41-97 7-50 (95)
89 2io1_B Small ubiquitin-related 98.2 2.5E-06 8.5E-11 56.0 6.1 47 41-97 7-53 (94)
90 1oqy_A HHR23A, UV excision rep 98.2 1E-06 3.5E-11 70.4 4.0 47 41-97 7-56 (368)
91 1wm3_A Ubiquitin-like protein 98.2 6.2E-06 2.1E-10 51.2 6.4 46 42-97 2-47 (72)
92 2io0_B Small ubiquitin-related 98.1 1.1E-05 3.6E-10 52.8 6.5 47 41-97 5-51 (91)
93 3a4r_A Nfatc2-interacting prot 98.0 1.8E-05 6.3E-10 50.0 6.9 47 41-97 7-54 (79)
94 2d07_B Ubiquitin-like protein 98.0 1.7E-05 5.9E-10 51.7 6.8 47 41-97 17-63 (93)
95 2k8h_A Small ubiquitin protein 97.9 3.4E-05 1.1E-09 52.3 6.9 47 41-97 26-72 (110)
96 1wz0_A Ubiquitin-like protein 97.9 3.2E-05 1.1E-09 51.8 6.4 47 41-97 24-70 (104)
97 2eke_C Ubiquitin-like protein 97.8 4.8E-05 1.6E-09 51.3 5.9 46 41-97 31-76 (106)
98 2pjh_A Protein NPL4, nuclear p 97.3 0.00014 4.8E-09 46.3 2.7 46 41-97 4-49 (80)
99 3kyd_D Small ubiquitin-related 97.1 0.0017 5.8E-08 44.5 6.5 47 41-97 40-86 (115)
100 3pge_A SUMO-modified prolifera 96.8 0.003 1E-07 46.8 6.5 46 41-97 29-74 (200)
101 1oey_A P67-PHOX, neutrophil cy 96.4 0.011 3.9E-07 38.4 6.3 45 41-97 5-49 (83)
102 3uf8_A Ubiquitin-like protein 96.3 0.0085 2.9E-07 43.8 6.1 47 41-98 21-67 (209)
103 3tix_A Ubiquitin-like protein 96.1 0.0084 2.9E-07 45.0 5.3 46 41-97 57-102 (207)
104 2kc2_A Talin-1, F1; FERM, adhe 95.8 0.017 5.7E-07 40.2 5.2 38 43-90 13-50 (128)
105 3qx1_A FAS-associated factor 1 95.6 0.071 2.4E-06 33.3 7.2 46 39-95 5-50 (84)
106 2dzk_A UBX domain-containing p 94.9 0.13 4.4E-06 34.0 7.2 45 41-95 13-57 (109)
107 4e71_A Plexin-B2, MM1; transme 94.3 0.09 3.1E-06 35.9 5.3 43 41-91 11-55 (111)
108 2kvr_A Ubiquitin carboxyl-term 94.1 0.068 2.3E-06 36.7 4.5 35 63-97 57-91 (130)
109 1wj4_A KIAA0794 protein; UBX d 94.0 0.17 5.8E-06 34.3 6.3 44 41-95 43-86 (124)
110 2jxx_A Nfatc2-interacting prot 93.9 0.26 8.9E-06 32.4 6.9 47 41-97 25-72 (97)
111 3v7o_A Minor nucleoprotein VP3 93.9 0.011 3.6E-07 45.0 0.0 38 60-97 29-66 (227)
112 2r2o_A Plexin-B1; effector dom 93.8 0.11 3.7E-06 36.8 5.2 47 41-91 24-72 (138)
113 4e74_A Plexin-A4; RBD, structu 93.7 0.094 3.2E-06 36.0 4.6 44 41-91 13-58 (117)
114 3h6n_A Plexin-D1; structural g 92.3 0.27 9.1E-06 34.3 5.3 42 41-90 4-47 (127)
115 1s3s_G P47 protein; AAA ATPase 91.7 0.37 1.3E-05 32.6 5.4 46 40-95 51-97 (127)
116 3kuz_A Plexin-C1; structural g 91.5 0.55 1.9E-05 32.7 6.1 47 41-91 19-72 (126)
117 2cr5_A Reproduction 8; UBX dom 91.5 0.71 2.4E-05 30.2 6.5 44 41-95 23-66 (109)
118 4eut_A Serine/threonine-protei 89.3 0.6 2.1E-05 35.2 5.2 38 61-98 321-358 (396)
119 4da1_A Protein phosphatase 1K, 89.3 0.07 2.4E-06 41.6 0.0 46 41-97 30-75 (389)
120 3ix6_A TS, tsase, thymidylate 88.5 0.087 3E-06 42.1 0.0 37 61-97 30-66 (360)
121 2ylm_A Ubiquitin carboxyl-term 88.4 0.54 1.9E-05 38.6 4.7 36 62-97 36-71 (530)
122 1vd2_A Protein kinase C, IOTA 87.5 3.6 0.00012 26.6 7.4 33 59-91 13-45 (89)
123 1h4r_A Merlin; FERM, neurofibr 86.4 1.6 5.5E-05 32.5 5.9 39 40-89 21-59 (314)
124 1ef1_A Moesin; membrane, FERM 86.3 1.6 5.5E-05 32.0 5.9 38 41-89 1-38 (294)
125 1q1o_A Cell division control p 86.3 1.9 6.4E-05 28.6 5.6 53 41-96 5-62 (98)
126 3ivf_A Talin-1; FERM domain, c 86.0 0.72 2.5E-05 35.4 3.9 49 30-89 75-123 (371)
127 2v1y_A Phosphatidylinositol-4, 85.9 2 7E-05 28.9 5.7 38 37-85 16-53 (108)
128 3qa8_A MGC80376 protein; kinas 85.4 0.6 2E-05 39.5 3.4 38 61-98 321-358 (676)
129 3qij_A Protein 4.1; cytoskelet 84.3 1.9 6.5E-05 32.3 5.5 39 41-89 17-55 (296)
130 3au4_A Myosin-X; protein-prote 82.9 3.6 0.00012 33.2 6.9 49 30-89 205-254 (555)
131 3ig3_A Plxna3 protein; plexin 82.7 2.2 7.6E-05 36.4 5.8 44 41-91 233-278 (627)
132 2l76_A Nfatc2-interacting prot 82.3 4.7 0.00016 26.6 6.1 46 41-97 21-66 (95)
133 2al3_A TUG long isoform; TUG U 82.1 3 0.0001 27.2 5.1 46 42-97 10-55 (90)
134 3goe_A DNA repair protein RAD6 80.4 3.7 0.00013 26.6 4.9 47 41-97 9-56 (82)
135 3hm6_X Plexin-B1; structural g 78.4 2.8 9.7E-05 35.9 5.0 59 24-91 245-305 (644)
136 1ip9_A BEM1 protein; ubiquitin 77.0 5.6 0.00019 25.8 5.1 29 60-88 20-48 (85)
137 3pvl_A Myosin VIIA isoform 1; 75.2 5.9 0.0002 33.3 6.1 52 28-89 250-301 (655)
138 4a3p_A Ubiquitin carboxyl-term 74.7 9.4 0.00032 27.5 6.4 33 63-95 141-174 (217)
139 1pqs_A Cell division control p 72.3 3.9 0.00013 25.7 3.4 34 63-96 3-41 (77)
140 2i1j_A Moesin; FERM, coiled-co 72.0 7.6 0.00026 32.1 5.9 38 41-89 4-41 (575)
141 3jyu_A Ubiquitin carboxyl-term 71.5 8.2 0.00028 28.1 5.5 34 63-96 153-187 (231)
142 4dxa_B KREV interaction trappe 62.8 8.1 0.00028 28.9 4.0 35 41-89 5-41 (322)
143 2y3a_A Phosphatidylinositol-4, 62.8 12 0.0004 33.8 5.5 37 38-85 49-85 (1092)
144 2qt7_A Receptor-type tyrosine- 57.2 4.4 0.00015 26.6 1.4 18 72-89 65-82 (91)
145 1wgr_A Growth factor receptor- 55.9 11 0.00039 24.7 3.4 31 60-90 18-48 (100)
146 2ylm_A Ubiquitin carboxyl-term 55.6 11 0.00038 30.8 3.9 33 58-90 447-479 (530)
147 2zjd_A Microtubule-associated 53.3 50 0.0017 22.4 7.3 59 32-95 27-86 (130)
148 3hhm_A Phosphatidylinositol-4, 48.2 27 0.00092 31.6 5.4 43 32-85 33-76 (1091)
149 3ivf_A Talin-1; FERM domain, c 45.8 27 0.00092 26.4 4.5 35 41-86 3-37 (371)
150 3tca_A Amyloid beta A4 precurs 43.4 52 0.0018 23.3 5.5 32 60-91 43-74 (291)
151 3tve_T 50S ribosomal protein L 38.5 22 0.00074 22.9 2.5 44 48-91 8-51 (92)
152 3he4_B Synzip5; heterodimeric 37.9 21 0.00071 20.3 2.1 15 71-85 2-16 (46)
153 1wgk_A Riken cDNA 2900073H19 p 36.3 79 0.0027 20.6 5.1 41 41-85 11-56 (114)
154 1w26_A Trigger factor, TF; cha 34.1 1.1E+02 0.0036 24.1 6.4 59 25-85 192-274 (432)
155 2bps_A YUKD protein; ubiquitin 32.9 90 0.0031 19.4 5.3 30 60-89 15-44 (81)
156 3gxs_A Phenylacetate-coenzyme 30.1 98 0.0033 19.0 5.5 55 26-89 13-82 (109)
157 2juo_A GA-binding protein alph 29.8 41 0.0014 21.9 2.7 31 63-93 4-34 (89)
158 4gmv_A RAS-associated and plec 29.1 85 0.0029 23.7 4.8 30 60-89 40-69 (281)
159 1vq8_S 50S ribosomal protein L 28.7 22 0.00076 22.6 1.3 44 48-91 8-52 (85)
160 3po0_A Small archaeal modifier 28.4 66 0.0022 19.2 3.5 24 62-85 18-41 (89)
161 3r8s_T 50S ribosomal protein L 28.3 30 0.001 22.2 1.9 44 48-91 13-57 (93)
162 2qjl_A URM1, ubiquitin-related 27.5 1.1E+02 0.0038 18.8 5.3 41 42-85 2-45 (99)
163 1wgy_A RAP guanine nucleotide 27.3 1E+02 0.0035 20.2 4.5 45 41-95 9-53 (104)
164 2al6_A Focal adhesion kinase 1 27.1 75 0.0026 24.2 4.3 39 43-87 9-47 (375)
165 1vjk_A Molybdopterin convertin 26.8 65 0.0022 19.9 3.3 44 37-85 6-50 (98)
166 3vow_A Probable DNA DC->DU-edi 26.7 38 0.0013 24.7 2.4 17 31-49 105-121 (190)
167 1t11_A Trigger factor, TF; hel 25.8 81 0.0028 24.5 4.3 59 25-85 195-277 (392)
168 2c7h_A RBBP6, retinoblastoma-b 24.8 1.3E+02 0.0045 19.1 4.5 27 63-89 19-46 (86)
169 3ukw_C Bimax1 peptide; arm rep 23.3 21 0.00071 18.4 0.3 11 12-22 16-26 (28)
170 1ffv_A CUTS, iron-sulfur prote 22.8 53 0.0018 22.9 2.5 20 57-76 8-27 (163)
171 4gdk_A Ubiquitin-like protein 22.2 1.3E+02 0.0046 18.9 4.2 32 65-96 23-54 (91)
172 3v4k_A DNA DC->DU-editing enzy 21.4 50 0.0017 24.3 2.2 16 32-49 120-135 (203)
173 1dd4_C 50S ribosomal protein L 21.2 78 0.0027 17.4 2.5 16 75-90 19-34 (40)
174 3j21_T 50S ribosomal protein L 21.0 42 0.0014 21.3 1.5 45 47-91 8-53 (86)
175 4hti_A Receptor-type tyrosine- 20.7 1.1E+02 0.0037 20.1 3.5 17 73-89 73-89 (99)
176 2zjr_Q 50S ribosomal protein L 20.7 27 0.00092 22.6 0.5 29 63-91 24-52 (95)
177 1n62_A Carbon monoxide dehydro 20.1 65 0.0022 22.5 2.5 20 57-76 8-27 (166)
No 1
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.95 E-value=7.8e-28 Score=163.15 Aligned_cols=80 Identities=48% Similarity=0.772 Sum_probs=77.7
Q ss_pred CCcccCCCCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 17 VGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 17 ~~Kr~k~e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
.+||+|+|++|+||++||++|+| +|+|+|++|+.+++++|+|+|++++|+|++++||++||++|++.+|||+++|||+|
T Consensus 2 ~~k~~~~~~~l~~e~~~l~~~~~-~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 2 SSGSSGTEDSLMPEEEFLRRNKG-PVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp CCSCCCGGGSCCCHHHHHHHCCS-CEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred CccccCCccccCCHHHHHHhCCC-CEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 58999999999999999999999 99999999999899999999999999999999999999999999999999999998
Q ss_pred e
Q psy10057 97 D 97 (99)
Q Consensus 97 ~ 97 (99)
+
T Consensus 81 ~ 81 (115)
T 1we7_A 81 E 81 (115)
T ss_dssp T
T ss_pred C
Confidence 5
No 2
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.83 E-value=1.8e-20 Score=125.93 Aligned_cols=74 Identities=32% Similarity=0.473 Sum_probs=67.9
Q ss_pred CCCcccCC-CCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecC-CccHHHHHHHHHHHhCCCCCceE
Q psy10057 16 PVGKKIRS-EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDL-RTSVTALKSQIHDLIGMPAGKQK 93 (99)
Q Consensus 16 P~~Kr~k~-e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~-tdTV~~LK~kI~e~~GIP~~kQk 93 (99)
-.+||+|+ |++|+||++||++||+ +++|.|++|+++ +|++++++|++ ++||++||++|++.+|||+++||
T Consensus 2 ~~~k~~~~~~~~l~~e~~~l~~~~~-~i~i~Vk~~~~~-------~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr 73 (111)
T 1we6_A 2 SSGSSGKFDESALVPEDQFLAQHPG-PATIRVSKPNEN-------DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQK 73 (111)
T ss_dssp CCCCCCSCCGGGCCCHHHHHHHCCS-CEEEEECCTTCS-------SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE
T ss_pred CccccccCCccccCcHHHHHHhCCC-cEEEEEEecccC-------CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE
Confidence 36899995 5799999999999999 999999999653 48999999997 99999999999999999999999
Q ss_pred EEee
Q psy10057 94 LHLD 97 (99)
Q Consensus 94 L~~~ 97 (99)
|+|+
T Consensus 74 L~~~ 77 (111)
T 1we6_A 74 LSGK 77 (111)
T ss_dssp EECS
T ss_pred EEEC
Confidence 9985
No 3
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=2.4e-11 Score=82.12 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=46.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
-.+|+|.+|+.-. .|++++|+|++++||++||++|++++|+|+++|||+|+
T Consensus 15 ~ati~V~~~~~~~------~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 15 IATIEVFLPPRLK------KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp EEEEEEECCTTTC------CSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred eEEEEEEecCCCC------CCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 6799999998432 37899999999999999999999999999999999996
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.17 E-value=6.2e-11 Score=79.47 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=37.3
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|+++|||++||++|++++|+|+++|||+|+
T Consensus 29 ~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 29 RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 469999999999999999999999999999999999996
No 5
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.16 E-value=1.3e-10 Score=77.01 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=43.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|.|...+ +.|++++++|++++||++||++|++.+|||+++|||+|.
T Consensus 15 ~v~l~It~s~--------~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 15 FIKVNVSNSH--------NDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEEESS--------CSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred eEEEEEEECC--------CCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 6888888754 346799999999999999999999999999999999985
No 6
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.15 E-value=7.1e-11 Score=78.97 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCCCCcccCCCCC-CCcHH--HHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 14 EEPVGKKIRSEES-LIPEQ--VFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 14 ~~P~~Kr~k~e~~-L~pE~--~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
-+|.+||.+.++. .+.|+ -|+.-++...+.|.|... +|+++.++|++++||++||++|++.+|+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~----------~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 74 (111)
T 2ojr_A 5 IDTNNDGWIEGDELYIDTNNDGWIEGDELLAMQIFVKTL----------TGKTITLEVEPSDTIENVKAKIQDKEGIPPD 74 (111)
T ss_dssp CCTTCSSSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECS----------SSCEEEEEECTTCBHHHHHHHHHHHHCCCTT
T ss_pred eecCCCceecCCEEEEeecccccccCCCCCeEEEEEEcC----------CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcc
Confidence 4789999998764 34444 476666543688888753 4889999999999999999999999999999
Q ss_pred ceEEEee
Q psy10057 91 KQKLHLD 97 (99)
Q Consensus 91 kQkL~~~ 97 (99)
+|||+|+
T Consensus 75 ~qrLi~~ 81 (111)
T 2ojr_A 75 QQRLIFA 81 (111)
T ss_dssp TEEEEET
T ss_pred cEEEEEC
Confidence 9999985
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.11 E-value=2.2e-10 Score=71.26 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=42.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++.|.|... +|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus 4 ~m~i~Vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 4 PLSILVRNN----------KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp CEEEEEECT----------TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CEEEEEEeC----------CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 477777754 58999999999999999999999999999999999996
No 8
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.06 E-value=2.7e-10 Score=76.91 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=37.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++|+|+++|||++||++|++++|||+++|||+|+
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 458999999999999999999999999999999999986
No 9
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.05 E-value=2e-10 Score=73.80 Aligned_cols=40 Identities=33% Similarity=0.558 Sum_probs=37.8
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.++|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus 17 ~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 17 NLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp ETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4579999999999999999999999999999999999985
No 10
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.04 E-value=6.1e-10 Score=70.60 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=43.8
Q ss_pred hCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 36 KMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 36 ~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
..+. .+.|.|.. ++|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus 13 ~~~~-~m~i~Vk~----------~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 13 EEPD-SLEVLVKT----------LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp --CC-EEEEEEEE----------TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCC-eEEEEEEc----------CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4556 67777775 358999999999999999999999999999999999995
No 11
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.04 E-value=7.2e-10 Score=73.74 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=43.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|.|...+. .++.++++|++++||++||++|++++|||+++|||+|.
T Consensus 14 ~v~l~It~s~~--------~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 14 SVHLHITHANL--------KSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CEEEEEEETTS--------SCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEEECCC--------CceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 68888888543 35789999999999999999999999999999999985
No 12
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.04 E-value=6.4e-10 Score=70.75 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=37.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.|+|.+++||++||++|++++|+|+++|||+|+
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 458999999999999999999999999999999999995
No 13
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.03 E-value=6.2e-10 Score=73.51 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=43.5
Q ss_pred HHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 30 EQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 30 E~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+.|...-+. .+.|.|... |+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 15 ~~~~~~~~~~-~m~I~Vk~~-----------g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 15 ENLYFQGHPK-IMKVTVKTP-----------KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp --------CC-CEEEEEECS-----------SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cccccCCCCC-eEEEEEEeC-----------CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 7788888888 788888753 5688999999999999999999999999999999985
No 14
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.03 E-value=5.6e-10 Score=75.98 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=45.6
Q ss_pred CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|...|+++|.+=+... | +.+++|+|++++||+.||++|++++|||+++|||+|+
T Consensus 18 ~~~~~i~l~v~v~d~~s---~---~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 18 SPTQDIRLWVSVEDAQM---H---TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp --CCCEEEEEEEEESSS---C---CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCcEEEEEEEEccCC---C---CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 34338999999865432 2 4799999999999999999999999999999999986
No 15
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=8.6e-10 Score=72.68 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=45.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|.+++. .++|++++++|++++||++||++|++++|||+++|||+|+
T Consensus 7 ~m~I~Vk~~~~------~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 7 GMLITVYCVRR------DLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CEEEEEEECCC------CCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred eEEEEEEECCC------CcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 37788888753 2568999999999999999999999999999999999985
No 16
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=1.5e-09 Score=68.38 Aligned_cols=47 Identities=26% Similarity=0.478 Sum_probs=42.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus 7 ~m~i~Vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 7 GIQVFVKNP----------DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp SEEEEEEET----------TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CEEEEEEcC----------CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 677777754 48899999999999999999999999999999999985
No 17
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=4.4e-10 Score=75.41 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=36.1
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
++|++++|+|++++||++||++|++++|||+++|||+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 45999999999999999999999999999999999986
No 18
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.98 E-value=1.5e-09 Score=69.46 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=41.9
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus 4 ~m~I~Vk~~----------~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 4 PLSILVRNN----------KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp EEEEEEEET----------TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred cEEEEEECC----------CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 466777754 48899999999999999999999999999999999986
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=2e-09 Score=66.46 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=41.9
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 7 ~m~i~vk~~----------~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 7 GMQLTVKAL----------QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp SEEEEEEET----------TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred cEEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 577777753 48899999999999999999999999999999999985
No 20
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.97 E-value=1.4e-09 Score=67.20 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=41.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEE-EEE-ecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTL-SLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti-~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+++ +++ |++++||++||++|++++|+|+++|||+|+
T Consensus 2 ~m~i~Vk~~----------~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 2 SMWIQVRTM----------DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp CEEEEEEET----------TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred cEEEEEEEC----------CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 466777754 47785 899 999999999999999999999999999985
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.97 E-value=1.9e-09 Score=67.51 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=43.0
Q ss_pred CCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHH---hCCCCCceEEEee
Q psy10057 38 ATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDL---IGMPAGKQKLHLD 97 (99)
Q Consensus 38 pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~---~GIP~~kQkL~~~ 97 (99)
|+ .+.|.|... +|++++++|++++||++||++|+++ +|+|+++|||+|+
T Consensus 3 ~~-~m~i~vk~~----------~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 3 PM-AVTITLKTL----------QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp -C-CEEEEEEET----------TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred Cc-eEEEEEEEC----------CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 55 678888764 4889999999999999999999998 8999999999985
No 22
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.97 E-value=1.8e-09 Score=69.15 Aligned_cols=47 Identities=23% Similarity=0.478 Sum_probs=42.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|.. ++|+++.++|.+++||++||++|++++|+|+++|||+|+
T Consensus 17 ~m~i~Vk~----------~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 17 SMQIFVNT----------LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp SEEEEEEC----------TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEe----------CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 56677764 358999999999999999999999999999999999996
No 23
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.97 E-value=1.5e-09 Score=68.19 Aligned_cols=47 Identities=17% Similarity=0.408 Sum_probs=42.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+++.|+|++++||++||++|++.+|+|+++|||+|+
T Consensus 12 ~m~i~vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 12 SMLIKVKTL----------TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp CEEEEEECT----------TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred cEEEEEEcC----------CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 577777743 58899999999999999999999999999999999995
No 24
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.95 E-value=7.7e-10 Score=70.93 Aligned_cols=39 Identities=21% Similarity=0.504 Sum_probs=37.1
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 469999999999999999999999999999999999985
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.95 E-value=2.2e-09 Score=66.71 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=41.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus 3 ~m~i~vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 3 HMQIFVKTL----------TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp CEEEEEECT----------TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEcC----------CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 466667654 48899999999999999999999999999999999985
No 26
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.94 E-value=1.9e-09 Score=66.93 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=37.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|.+++||+.||++|+++.|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 458999999999999999999999999999999999996
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=1.8e-09 Score=67.23 Aligned_cols=39 Identities=28% Similarity=0.548 Sum_probs=36.8
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 358899999999999999999999999999999999985
No 28
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=1e-09 Score=70.32 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=37.8
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+++|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus 16 ~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 16 TLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp ETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4569999999999999999999999999999999999985
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.92 E-value=2.8e-09 Score=64.70 Aligned_cols=38 Identities=18% Similarity=0.483 Sum_probs=36.3
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 48899999999999999999999999999999999985
No 30
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.92 E-value=1.6e-09 Score=69.36 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=37.5
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+++|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 18 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 18 KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 3569999999999999999999999999999999999985
No 31
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.91 E-value=2.6e-09 Score=69.81 Aligned_cols=47 Identities=13% Similarity=0.329 Sum_probs=42.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|+. ++|++++|+|.+++||+.||++|+++.|||+++|||+|+
T Consensus 21 ~m~I~Vk~----------~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 21 YIKLKVIG----------QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp EEEEEEEC----------TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cEEEEEEe----------CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 57777764 358999999999999999999999999999999999996
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.91 E-value=4.2e-09 Score=68.79 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=41.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +| +++++|++++||++||++|++++|+|+++|||+|+
T Consensus 15 ~~~I~Vk~~----------~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 15 KIHVTVKFP----------SK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp CEEEEEECS----------SC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred CEEEEEEcC----------Cc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 577777753 35 89999999999999999999999999999999985
No 33
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=2.9e-09 Score=68.61 Aligned_cols=47 Identities=32% Similarity=0.299 Sum_probs=41.5
Q ss_pred ceEEEEEeCCCCCCCCCcccCc--EEEEEecCCccHHHHHHHHHHHh--CCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQ--TLSLSLDLRTSVTALKSQIHDLI--GMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gq--ti~l~v~~tdTV~~LK~kI~e~~--GIP~~kQkL~~~ 97 (99)
.+.|.|..++ |+ +++|+|++++||++||++|++.+ |+|+++|||+|.
T Consensus 7 ~m~i~Vk~~~----------~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 7 GVTLLVKSPN----------QRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CCEEEEECSS----------SSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEEEEeCC----------CCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 6888888764 44 78888889999999999999999 999999999995
No 34
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.90 E-value=3.6e-09 Score=68.99 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=46.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|.+|+. ++|+.+.+.++.+.||+.||.+|+..+|+|+++|||+|.
T Consensus 9 ~v~l~I~~~~~-------~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 9 LLTLKIKCSNQ-------PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp EEEEEEEESSC-------SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred cEEEEEEecCC-------CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 79999999854 368999999999999999999999999999999999986
No 35
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.3e-09 Score=69.14 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=42.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+++.|+|++++||++||++|++++|+|+++|||+|+
T Consensus 22 ~m~I~Vk~~----------~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 22 PMQIFVKTL----------TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp CCEEEEEET----------TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 577777754 48899999999999999999999999999999999985
No 36
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.89 E-value=5.2e-09 Score=64.06 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=36.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 38899999999999999999999999999999999986
No 37
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=6.4e-09 Score=65.81 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCCCCCCCcccC-cEEEE-EecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNG-QTLSL-SLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~G-qti~l-~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +| +++++ +|++++||++||++|++.+|+|+++|||+|+
T Consensus 7 ~m~i~Vk~~----------~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 7 GMWIQVRTI----------DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp CEEEEEEET----------TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred cEEEEEEEC----------CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 577777764 37 69999 5999999999999999999999999999985
No 38
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=8.9e-10 Score=71.94 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=35.8
Q ss_pred ccCcEEEEEec--CCccHHHHHHHH-HHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLD--LRTSVTALKSQI-HDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~--~tdTV~~LK~kI-~e~~GIP~~kQkL~~~ 97 (99)
++|++++|+|+ +++||++||++| ++.+|+|+++|||+|+
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 56888988866 999999999999 9999999999999996
No 39
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.89 E-value=3.3e-09 Score=70.67 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=40.6
Q ss_pred hCCCCceEEEEEeCCCCCCCCCcccCc--EEEEEecCCccHHHHHHHHHHH-hCCC-CCceEEEee
Q psy10057 36 KMATPNVTFNVVVPNMTDKPEWKLNGQ--TLSLSLDLRTSVTALKSQIHDL-IGMP-AGKQKLHLD 97 (99)
Q Consensus 36 ~~pg~~v~i~V~~P~~~~k~ewkL~Gq--ti~l~v~~tdTV~~LK~kI~e~-~GIP-~~kQkL~~~ 97 (99)
..++ .+.|.|+.++ |+ +++|+|++++||++||++|+++ .|+| +++|||+|+
T Consensus 19 ~~~~-~m~I~VK~~~----------g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 19 FQGH-PVTLIIKAPN----------QKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp -----CEEEEEECTT----------SSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred CCCC-eEEEEEEcCC----------CCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 3456 7999999864 44 6899999999999999999997 5666 599999995
No 40
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.88 E-value=3e-09 Score=69.81 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=35.7
Q ss_pred cCcEE-EEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTL-SLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti-~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+++ .|+|++++||++||++|++.+|||+++|||+|.
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK 53 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 38899 699999999999999999999999999999985
No 41
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.88 E-value=5e-09 Score=63.53 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=36.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 48899999999999999999999999999999999985
No 42
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.88 E-value=4.6e-09 Score=74.04 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=43.7
Q ss_pred HHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 32 VFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 32 ~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+....+. .+.|.|.. ++|++++|+|++++||++||++|++.+|+|+++|||+|+
T Consensus 12 ~~~~~~~~-~m~i~Vk~----------~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 66 (172)
T 3u30_A 12 SGLVPRGS-HMQIFVKT----------LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 66 (172)
T ss_dssp -------C-CEEEEEEE----------TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCCCCC-cEEEEEEe----------CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 34445556 78888874 359999999999999999999999999999999999985
No 43
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.85 E-value=7.5e-09 Score=71.71 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=37.3
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus 89 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 89 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 469999999999999999999999999999999999996
No 44
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.84 E-value=4.5e-09 Score=68.23 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=35.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
+.++...+.+++++||++||+||++.+|||+++|||+|
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~ 49 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQL 49 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEE
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 34667889999999999999999999999999999997
No 45
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.84 E-value=7.2e-09 Score=66.39 Aligned_cols=39 Identities=28% Similarity=0.599 Sum_probs=36.8
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.|+|++++||++||++|++++|+|+++|||+|+
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 358899999999999999999999999999999999985
No 46
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.84 E-value=6.8e-09 Score=67.53 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=41.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|.|...+.. ..++++|++++||++||++|++.+|||+++|||+|.
T Consensus 7 ~v~l~I~~~~~~---------~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 7 GVMVFISSSLNS---------FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEEEETTSS---------SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEEEEECCCC---------eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 478888874321 468899999999999999999999999999999985
No 47
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=7.4e-09 Score=69.82 Aligned_cols=39 Identities=31% Similarity=0.588 Sum_probs=37.3
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 569999999999999999999999999999999999985
No 48
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.5e-09 Score=71.13 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=37.2
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.|+|++++||++||++|++++|+|+++|||+|+
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 469999999999999999999999999999999999996
No 49
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.83 E-value=2.7e-09 Score=69.67 Aligned_cols=46 Identities=24% Similarity=0.443 Sum_probs=40.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.++|+|.. +|+++.|+|++++||++||++|++.+|||+++|||+|.
T Consensus 17 ~~~i~Vk~-----------~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 17 LVDLKIIW-----------NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp CEEEEEEE-----------TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred eEEEEEEE-----------CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 46666653 37899999999999999999999999999999999984
No 50
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.82 E-value=3.6e-09 Score=68.26 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=34.7
Q ss_pred cCcEEEE-EecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 60 NGQTLSL-SLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 60 ~Gqti~l-~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
+|++++| +|++++||++||++|++++|||+++|||+
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 4889999 99999999999999999999999999999
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.82 E-value=9.7e-09 Score=67.99 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=42.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|+.. +|+++.++|..++||++||++|++++|+|+++|||+|+
T Consensus 23 ~m~I~Vk~~----------~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 23 ECQLRLRLS----------TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp SEEEEEEET----------TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred eEEEEEEcC----------CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 577888754 48999999999999999999999999999999999985
No 52
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.80 E-value=1.1e-08 Score=66.26 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=36.2
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 9 ~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 48899999999999999999999999999999999985
No 53
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.80 E-value=1.4e-08 Score=68.01 Aligned_cols=39 Identities=28% Similarity=0.599 Sum_probs=37.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.|+|.+++||+.||++|++++|+|+++|||+|+
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 358999999999999999999999999999999999985
No 54
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.80 E-value=5e-09 Score=72.58 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=34.8
Q ss_pred Cc-EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQ-TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gq-ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+ +++|+|.+++||++||++|++++|||+++|||+|+
T Consensus 10 ~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 10 HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 54 69999999999999999999999999999999986
No 55
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.79 E-value=1.6e-08 Score=69.55 Aligned_cols=47 Identities=11% Similarity=0.218 Sum_probs=41.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHH------HhCC--CCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHD------LIGM--PAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e------~~GI--P~~kQkL~~~ 97 (99)
.+.|+|.. ++|++++|+|++++||++||++|++ ++|+ |+++|||+|+
T Consensus 16 ~m~I~vKt----------l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~ 70 (116)
T 1wgh_A 16 MINLRLIL----------VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 70 (116)
T ss_dssp SEEEEEEC----------SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET
T ss_pred eEEEEEEe----------CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC
Confidence 67777774 4589999999999999999999999 6785 6999999996
No 56
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.79 E-value=1.2e-08 Score=65.74 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=35.5
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 7799999999999999999999999999999999985
No 57
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.77 E-value=1.2e-08 Score=67.92 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCCceEEEEEeCCCCCCCCCcccCcEEEE--EecCCccHHHHHHHH-HHHhCCCCCceEEEee
Q psy10057 38 ATPNVTFNVVVPNMTDKPEWKLNGQTLSL--SLDLRTSVTALKSQI-HDLIGMPAGKQKLHLD 97 (99)
Q Consensus 38 pg~~v~i~V~~P~~~~k~ewkL~Gqti~l--~v~~tdTV~~LK~kI-~e~~GIP~~kQkL~~~ 97 (99)
++ .+.|.|... +|+++++ +|++++||+.||++| ++..|+|+++|||+|+
T Consensus 17 ~~-~m~I~VKtl----------~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 17 NA-AVHLTLKKI----------QAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp -C-CEEEEEEEC----------SSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred CC-CEEEEEEcC----------CCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 44 688888754 5777666 566999999999999 8888999999999996
No 58
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.76 E-value=7.9e-09 Score=71.77 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=34.8
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
..++.++|.+++||.+||++|++++|||+++|||+|+
T Consensus 11 ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 3489999999999999999999999999999999986
No 59
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.76 E-value=2.4e-08 Score=67.97 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=41.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|.|...+.. ..++++|++++||++||++|++.+|||+++|||+|.
T Consensus 6 ~v~l~V~~~~~~---------~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 6 VYDLEITTNATD---------FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp EEEEEEEESSCC---------SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred EEEEEEEECCCC---------ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 588888874321 368899999999999999999999999999999985
No 60
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.75 E-value=1.3e-08 Score=65.98 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=36.0
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHH---hCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDL---IGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~---~GIP~~kQkL~~~ 97 (99)
+|+++.++|++++||++||++|++. +|+|+++|||+|+
T Consensus 9 ~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 9 QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 5889999999999999999999999 8999999999985
No 61
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.74 E-value=1e-08 Score=66.45 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=35.5
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 6799999999999999999999999999999999985
No 62
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=2.4e-08 Score=65.77 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=40.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+ +.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 22 ~m~I~Vk~~----------~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 22 LIKVTVKTP----------KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEEECS----------SCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred eEEEEEEcC----------CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 577777753 365 6899999999999999999999999999999985
No 63
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.73 E-value=3.3e-08 Score=63.31 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=34.4
Q ss_pred CcEEEEEecCC-----ccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLR-----TSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~t-----dTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+++.++|+++ +||++||++|++.+|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 67889999985 99999999999999999999999985
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.72 E-value=2.6e-08 Score=70.19 Aligned_cols=39 Identities=28% Similarity=0.599 Sum_probs=37.3
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|.+++||++||++|++++|||+++|||+|+
T Consensus 104 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 104 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 569999999999999999999999999999999999985
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.72 E-value=1.4e-08 Score=70.34 Aligned_cols=38 Identities=39% Similarity=0.490 Sum_probs=36.5
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE-e
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH-L 96 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~-~ 96 (99)
++|++++++|++++||++||++|++.+|+|+++|||+ |
T Consensus 10 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 48 (159)
T 3rt3_B 10 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVH 48 (159)
T ss_dssp TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEc
Confidence 4699999999999999999999999999999999999 7
No 66
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.72 E-value=2.2e-08 Score=69.46 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHH------HhCCC--CCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHD------LIGMP--AGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e------~~GIP--~~kQkL~~~ 97 (99)
.+.|+|... +|++++|+|++++||++||++|++ ++|+| +++|||+|+
T Consensus 17 ~m~I~vktl----------~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 17 MINLRLILV----------SGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp CEEEEEECT----------TSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred eEEEEEEeC----------CCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 477777754 488999999999999999999999 78984 899999996
No 67
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.70 E-value=5.1e-08 Score=66.91 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... |++++|+|++++||++||++|++.+|||+++|||+|+
T Consensus 32 ~m~I~Vk~~-----------g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 32 IIKVTVKTP-----------KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp CEEEEEECS-----------SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred cEEEEEEeC-----------CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 588888752 6689999999999999999999999999999999985
No 68
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.1e-09 Score=68.88 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=36.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 48899999999999999999999999999999999996
No 69
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.14 E-value=2e-09 Score=66.09 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=36.7
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 358899999999999999999999999999999999986
No 70
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.68 E-value=2.4e-08 Score=71.55 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=37.2
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 469999999999999999999999999999999999986
No 71
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.67 E-value=2.4e-09 Score=79.37 Aligned_cols=39 Identities=36% Similarity=0.387 Sum_probs=0.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+|++++|+|++++||++||++|++.+|||+++|||+|+
T Consensus 8 L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 8 LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 569999999999999999999999999999999999996
No 72
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=6.2e-08 Score=63.82 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=39.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|... +|+ +.|+|+.++||++||++|++++||++++|||+|+
T Consensus 17 ~m~I~Vk~~----------~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 17 LIKVTVKTP----------KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEEECS----------SCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred eEEEEEEeC----------CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 466777653 355 6899999999999999999999999999999985
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.65 E-value=7.7e-08 Score=65.09 Aligned_cols=39 Identities=28% Similarity=0.599 Sum_probs=37.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.++|.+++||+.||++|++++|+|+++|||+|+
T Consensus 84 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 84 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 468999999999999999999999999999999999985
No 74
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.64 E-value=2.2e-08 Score=67.70 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=41.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC---------------CceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA---------------GKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~---------------~kQkL~~~ 97 (99)
.+.|+|. +|+|++++|+|++++||++||++|++++|+|+ ++|+|+|+
T Consensus 7 ~M~I~Vk----------~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~ 68 (105)
T 1v2y_A 7 GMTVRVC----------KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA 68 (105)
T ss_dssp SEEEEEE----------CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS
T ss_pred cEEEEEE----------ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC
Confidence 4667776 47799999999999999999999999999988 45699986
No 75
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.61 E-value=3.5e-08 Score=72.63 Aligned_cols=39 Identities=28% Similarity=0.599 Sum_probs=37.2
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++|+|++++||++||++|++.+|||+++|||+|+
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 469999999999999999999999999999999999986
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.60 E-value=9.7e-08 Score=64.61 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=36.2
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|++++++|++++||++||++|++.+|+|+++|+|+|+
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~ 46 (152)
T 3b08_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 48899999999999999999999999999999999985
No 77
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.58 E-value=3.8e-08 Score=68.80 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=41.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEE-EEEecCCccHHHHHHHH-----HHHhCCCC--CceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTL-SLSLDLRTSVTALKSQI-----HDLIGMPA--GKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti-~l~v~~tdTV~~LK~kI-----~e~~GIP~--~kQkL~~~ 97 (99)
.+.|+|... +|+.+ .+++++++||++||++| ++++|+|+ ++|||+|+
T Consensus 16 ~~~i~~kt~----------~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 16 QLEIKFRLT----------DGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp CEEEEEEET----------TSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred cEEEEEEEC----------CCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 678888864 58788 79999999999999999 67789997 89999996
No 78
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.57 E-value=5.6e-08 Score=62.00 Aligned_cols=44 Identities=27% Similarity=0.472 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCCCCCcccCcEEEEE-ecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 43 TFNVVVPNMTDKPEWKLNGQTLSLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 43 ~i~V~~P~~~~k~ewkL~Gqti~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+.+ +|+.+ ++ |+.++||++||++|++++|||+++|+|.|+
T Consensus 2 ~i~vr~~----------~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 2 RVRCKAK----------GGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp CEEEEET----------TEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEES
T ss_pred EEEEEcC----------CCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeC
Confidence 4667765 37655 76 999999999999999999999999999986
No 79
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.56 E-value=7.5e-09 Score=70.70 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=0.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|++++|+|++++||++||++|++.+|||+++|+|+|+
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 469999999999999999999999999999999999986
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.50 E-value=1.6e-07 Score=62.42 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=38.7
Q ss_pred eEEEEEeCCCCCCCCCcccCcEEEEEec-CCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLD-LRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~-~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+.|+|+.+ +|+. .|+|+ +++||++||++|++++|||++.|+|+|.
T Consensus 8 M~irvrs~----------~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 8 TMLRVRSR----------DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp EEEEEECS----------SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred EEEEEECC----------CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 56777754 4755 78999 9999999999999999999999999764
No 81
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.50 E-value=4.9e-08 Score=76.63 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=49.0
Q ss_pred CCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 26 SLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 26 ~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.++.|-......++ .+.|.|+.. +|+++.++|++++||++||++|++++|||+++|||+|+
T Consensus 219 ~llvE~~~A~~~~~-~MqI~VKtl----------~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 219 MVLLEFVTAAGITG-SMQIFVKTL----------TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp EEEEEEEEEESSCC-CEEEEEECT----------TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eeeeeehhccCCCC-eEEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 34444444444556 677777753 58899999999999999999999999999999999985
No 82
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.50 E-value=1.2e-07 Score=74.17 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=35.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
+|++++|+|++++||++||++|++.+|||+++|||+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi 48 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL 48 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence 599999999999999999999999999999999998
No 83
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=2.7e-07 Score=64.17 Aligned_cols=47 Identities=26% Similarity=0.495 Sum_probs=42.8
Q ss_pred ceEEEEE-eCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVV-VPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~-~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.++|+|. +|+ |+.++++++++.||++||+.|++..|+|++.|||+|+
T Consensus 15 ~itvkv~l~~~----------~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 15 LATVKVVLIPV----------GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp CEEEEEEETTT----------CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred cEEEEEEEcCC----------CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 5888887 553 6799999999999999999999999999999999996
No 84
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.48 E-value=1.6e-08 Score=72.05 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=0.0
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++|+++.|+|++++||++||++|++.+|||+++|||+|+
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 468999999999999999999999999999999999986
No 85
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.44 E-value=2.9e-07 Score=61.01 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=39.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEe--------cCC-ccHHHHHHHHHHHh--CCCCCc-eEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSL--------DLR-TSVTALKSQIHDLI--GMPAGK-QKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v--------~~t-dTV~~LK~kI~e~~--GIP~~k-QkL~~~ 97 (99)
.+.|.|...+.+. +++++|+| .++ +||+.||++|++++ |+|+++ |||+|.
T Consensus 12 ~~~i~Vk~~~~~~-------~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 12 DWHLAVKLADQPL-------APKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCEEEEETTCTT-------SCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred ceEEEEEeCCCCC-------ccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 4777887654210 16788884 444 99999999999999 999999 999985
No 86
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=1.5e-07 Score=61.04 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=32.9
Q ss_pred cCcEE--EE-EecCCccHHHHHHHHHHH-hCCCCCceEEEee
Q psy10057 60 NGQTL--SL-SLDLRTSVTALKSQIHDL-IGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti--~l-~v~~tdTV~~LK~kI~e~-~GIP~~kQkL~~~ 97 (99)
.|+.. +| +|++++||++||++|++. .|+++++|||+|.
T Consensus 19 ~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 19 KTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp SSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred CCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 35443 68 999999999999999995 8999999999974
No 87
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.41 E-value=3.3e-07 Score=61.38 Aligned_cols=39 Identities=8% Similarity=0.059 Sum_probs=36.6
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV 98 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~ 98 (99)
.++.+++.+.+++||..+|++|++++|||+.+|+|+|+.
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 378999999999999999999999999999999999974
No 88
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.33 E-value=8.8e-07 Score=56.86 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+.|.|.. ++|+.+.++|++++||++||++|++++ +++|||+|.
T Consensus 7 ~m~i~Vk~----------~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~ 50 (95)
T 1wia_A 7 GINVRLKF----------LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQ 50 (95)
T ss_dssp SEEEEEEE----------TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEET
T ss_pred eEEEEEEe----------CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEEC
Confidence 57777764 358899999999999999999999998 999999985
No 89
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.24 E-value=2.5e-06 Score=56.04 Aligned_cols=47 Identities=13% Similarity=0.325 Sum_probs=42.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+- .+|+.+.+.|..+++++.|+++++++.|+++++|||+|+
T Consensus 7 ~i~ikVk~----------~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd 53 (94)
T 2io1_B 7 HINLKVAG----------QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 53 (94)
T ss_dssp EEEEEEEC----------TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred eEEEEEEC----------CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC
Confidence 56777763 358899999999999999999999999999999999996
No 90
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.19 E-value=1e-06 Score=70.40 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=41.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHH---HhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHD---LIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e---~~GIP~~kQkL~~~ 97 (99)
.+.|.|+. ++|++++|+|..++||++||.+|++ ++|||+++|||+|.
T Consensus 7 ~M~I~VKt----------l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 7 AVTITLKT----------LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp CCCEEEEE----------TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred eEEEEEEe----------CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 46666764 3589999999999999999999999 57899999999996
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.16 E-value=6.2e-06 Score=51.16 Aligned_cols=46 Identities=13% Similarity=0.323 Sum_probs=41.1
Q ss_pred eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+|+|+- .+|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus 2 i~lkV~~----------~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 2 INLKVAG----------QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp EEEEEEC----------TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred EEEEEEC----------CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 5666663 358899999999999999999999999999999999996
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.07 E-value=1.1e-05 Score=52.84 Aligned_cols=47 Identities=13% Similarity=0.335 Sum_probs=42.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+.. +|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus 5 ~i~ikVk~~----------~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 5 HINLKVAGQ----------DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp EEEEEEECT----------TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET
T ss_pred eEEEEEECC----------CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 577777742 48899999999999999999999999999999999996
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.04 E-value=1.8e-05 Score=50.02 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=42.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCc-EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQ-TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gq-ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+.. +|+ .+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus 7 ~i~ikV~~~----------~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 7 ELRLRVQGK----------EKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp CEEEEEECS----------STTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET
T ss_pred EEEEEEEeC----------CCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 577777743 485 89999999999999999999999999999999996
No 94
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.02 E-value=1.7e-05 Score=51.73 Aligned_cols=47 Identities=13% Similarity=0.325 Sum_probs=42.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+. .+|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus 17 ~i~ikV~~----------~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 63 (93)
T 2d07_B 17 HINLKVAG----------QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 63 (93)
T ss_dssp EEEEEEEC----------TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred eEEEEEEC----------CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 57777773 248899999999999999999999999999999999996
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.91 E-value=3.4e-05 Score=52.34 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=43.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+.. +|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus 26 ~I~IkVk~~----------~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd 72 (110)
T 2k8h_A 26 LVAVKVVNA----------DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD 72 (110)
T ss_dssp CEEEEEEET----------TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS
T ss_pred eEEEEEECC----------CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 688888854 48899999999999999999999999999999999996
No 96
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.89 E-value=3.2e-05 Score=51.80 Aligned_cols=47 Identities=13% Similarity=0.335 Sum_probs=42.8
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+.. +|+.+.+.|..+++++.|++.++++.|++++.|||+|+
T Consensus 24 ~I~IkVk~~----------~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd 70 (104)
T 1wz0_A 24 HINLKVAGQ----------DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 70 (104)
T ss_dssp CEEEEEECS----------SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS
T ss_pred eEEEEEECC----------CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 688888843 48899999999999999999999999999999999996
No 97
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=97.79 E-value=4.8e-05 Score=51.32 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+- +|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus 31 ~I~IkV~~-----------~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd 76 (106)
T 2eke_C 31 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 76 (106)
T ss_dssp EEEEEEEC-----------SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred eEEEEEec-----------CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC
Confidence 57777763 28899999999999999999999999999999999996
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.28 E-value=0.00014 Score=46.27 Aligned_cols=46 Identities=11% Similarity=0.289 Sum_probs=39.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
++.|+|+-|+ | +..|+|+.++||++|+++|++.++++.+.|.|.++
T Consensus 4 ~m~lRvrs~~----------G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~ 49 (80)
T 2pjh_A 4 SIIIRVQSPD----------G-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYIN 49 (80)
T ss_dssp CCCCEEECSS----------E-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCS
T ss_pred cEEEEEECCC----------C-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEec
Confidence 4667888774 4 67788999999999999999999999999887664
No 99
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.06 E-value=0.0017 Score=44.48 Aligned_cols=47 Identities=13% Similarity=0.339 Sum_probs=42.5
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
-|+|+|+.. +|+.+.+.|..+++++.|++.++++.|++.+++||.|+
T Consensus 40 ~I~LKV~~q----------dg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD 86 (115)
T 3kyd_D 40 YIKLKVIGQ----------DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 86 (115)
T ss_dssp EEEEEEECT----------TSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET
T ss_pred eEEEEEEcC----------CCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEEC
Confidence 688888743 48899999999999999999999999999999999996
No 100
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.003 Score=46.81 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=41.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
-|+|+|+. +|+.+.+.+..+++++.|+..++++.|++.+++||.|+
T Consensus 29 ~I~LkV~~-----------~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd 74 (200)
T 3pge_A 29 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 74 (200)
T ss_dssp CEEEEEEC-----------SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET
T ss_pred eEEEEEec-----------CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC
Confidence 58888851 38899999999999999999999999999999999996
No 101
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.38 E-value=0.011 Score=38.41 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=40.9
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+++|+|++- -+|.|.|+...+.++|+++|.++++++++.-+|+|.
T Consensus 5 ~~~VKV~~~------------~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 5 AYTLKVHYK------------YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp CEEEEEESS------------SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred cEEEEEEEE------------EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 688999874 299999999999999999999999999999999984
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.31 E-value=0.0085 Score=43.77 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=41.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV 98 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~ 98 (99)
.|+|+|+. +|+.+.+.+..++++..|++..+++.|++.+++||.|+-
T Consensus 21 ~i~ikv~~-----------~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG 67 (209)
T 3uf8_A 21 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG 67 (209)
T ss_dssp EEEEEEEC-----------SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT
T ss_pred cEEEEEEc-----------CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC
Confidence 57888872 277899999999999999999999999999999999963
No 103
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0084 Score=45.02 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=41.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
-|+|+|+ . +|+.+.+.|..+++++.|++.+.++.|++.+++||+|+
T Consensus 57 ~InLKVk--~---------dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD 102 (207)
T 3tix_A 57 HINLKVS--D---------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD 102 (207)
T ss_dssp EEEEEEE--C---------SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET
T ss_pred cEEEEEe--c---------CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 5777775 1 38899999999999999999999999999999999996
No 104
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.76 E-value=0.017 Score=40.23 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 43 TFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 43 ~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
.|+|++|+ |+..++.|+-+.+|+.++..|+.+.||+..
T Consensus 13 ~LkV~llD----------g~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLD----------GTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTT----------SCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCC----------CCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 57888874 889999999999999999999999999855
No 105
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.57 E-value=0.071 Score=33.32 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=38.5
Q ss_pred CCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 39 TPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 39 g~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.+..+|+|++|+ |+.+.-.+..++||.+|.+-|.. .|.+....+|.
T Consensus 5 ~~~~~i~iRlpd----------G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~ 50 (84)
T 3qx1_A 5 EPVSKLRIRTPS----------GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLL 50 (84)
T ss_dssp CCEEEEEEECTT----------SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEE
T ss_pred CCeEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEE
Confidence 346899999995 88888899999999999999988 67776666665
No 106
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.89 E-value=0.13 Score=34.05 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=38.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.++|+|++|+ |+.+.-.+..++||++|++-|....+.+...-.|.
T Consensus 13 ~t~IqIRlpd----------G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~ 57 (109)
T 2dzk_A 13 IARIQFRLPD----------GSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLA 57 (109)
T ss_dssp CEEEEEECSS----------SCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEE
T ss_pred cEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEE
Confidence 6999999995 88999999999999999999999877665554443
No 107
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.26 E-value=0.09 Score=35.86 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=30.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK 91 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k 91 (99)
+++|+|..+.. .++.+.+.|-..|||+.+|+||-+.. |.|.++
T Consensus 11 ~ltl~v~~~~~--------~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~ 55 (111)
T 4e71_A 11 PLTVSVIVQDE--------GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSC 55 (111)
T ss_dssp EEEEEEEETTS--------CCCCEEEEEETTCBHHHHHHHHHHHHTC------
T ss_pred EEEEEEEecCC--------CCCceeeeeeccCcHHHHHHHHHHHHHcCCcccc
Confidence 67888877642 25678889999999999999999986 777764
No 108
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.09 E-value=0.068 Score=36.75 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=31.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
..++-|.-+.+++.||+.|.+.+|+|+++|||.+-
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 56788999999999999999999999999999753
No 109
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=93.97 E-value=0.17 Score=34.33 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=37.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.++|+|++|+ |..+.-.+..++||..|.+-|... |.+...-.|.
T Consensus 43 ~t~IqIRlPd----------G~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~ 86 (124)
T 1wj4_A 43 KAQLMLRYPD----------GKREQITLPEQAKLLALVKHVQSK-GYPNERFELL 86 (124)
T ss_dssp EEEEEEECTT----------SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEE
T ss_pred cEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEe
Confidence 7999999995 888999999999999999999876 6665555554
No 110
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=93.87 E-value=0.26 Score=32.37 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=40.8
Q ss_pred ceEEEEEeCCCCCCCCCcccC-cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNG-QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~G-qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+-.+ | +.+.+.|..+++++.|.....++.|++.+.-||.|+
T Consensus 25 ~I~LkV~~~d----------g~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD 72 (97)
T 2jxx_A 25 QLQLRVQGKE----------KHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD 72 (97)
T ss_dssp EEEEEEEESS----------SSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET
T ss_pred eEEEEEEcCC----------CCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 5777777542 6 489999999999999999999999999999999885
No 111
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=93.86 E-value=0.011 Score=45.03 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
+|+.+.+.|..+++++.|++.++++.|++.+++|+.|+
T Consensus 29 dGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFD 66 (227)
T 3v7o_A 29 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 66 (227)
T ss_dssp --------------------------------------
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEEC
Confidence 48899999999999999999999999999999999996
No 112
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.84 E-value=0.11 Score=36.78 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=34.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK 91 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k 91 (99)
+++|+|.++...+- -..+.+.+.|--.|||+.+|+||-+.. |+|.++
T Consensus 24 ~ltl~v~~~~~~~~----~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySq 72 (138)
T 2r2o_A 24 PLTLNALLAVGPGA----GEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQ 72 (138)
T ss_dssp EEEEEEEEC-----------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGG
T ss_pred EEEEEEEccCCccc----ccCCceeEEEeccccHHHHHHHHHHHHHcCCcccc
Confidence 78888887643210 024679999999999999999999997 677654
No 113
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.75 E-value=0.094 Score=36.02 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK 91 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k 91 (99)
+++|+|..+... ++..+.+.|-..|||+.+|+||-+.. |+|.++
T Consensus 13 ~ltl~v~~~~~~-------~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~ 58 (117)
T 4e74_A 13 TLVLSCVSPDNA-------NSPEVPVKILNCDTITQVKEKILDAIFKNVPCSH 58 (117)
T ss_dssp EEEEEECCC-----------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGG
T ss_pred EEEEEEEccCCC-------CCCceEeeeecCCchHHHHHHHHHHHhcCCCccc
Confidence 678887665421 35678889999999999999999986 777764
No 114
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=92.30 E-value=0.27 Score=34.29 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=33.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAG 90 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~ 90 (99)
+++|+|.+++. ++..+.+.|-..|||+.+|+||-+.. |+|.+
T Consensus 4 ~ltl~~~~~~~--------~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S 47 (127)
T 3h6n_A 4 PRNLNVSFQGC--------GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYS 47 (127)
T ss_dssp EEEEEEEEETS--------CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGG
T ss_pred EEEEEEEecCC--------CCCceeeeeeccCchhhhhHHHHHHHhccCCcc
Confidence 57888877432 35568889989999999999999986 67765
No 115
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=91.68 E-value=0.37 Score=32.64 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=36.3
Q ss_pred CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh-CCCCCceEEE
Q psy10057 40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI-GMPAGKQKLH 95 (99)
Q Consensus 40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~-GIP~~kQkL~ 95 (99)
+..+|+|++|+ |+.+.-.+..++||++|++-|.... +.....-.|.
T Consensus 51 ~~t~IqIRlpd----------G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~ 97 (127)
T 1s3s_G 51 PTTNIQIRLAD----------GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLM 97 (127)
T ss_dssp CCCCEEEEETT----------TTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEE
T ss_pred CcEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEe
Confidence 37999999995 8889999999999999999998863 3444444443
No 116
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.46 E-value=0.55 Score=32.68 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=35.5
Q ss_pred ceEEEEEe---CCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh----CCCCCc
Q psy10057 41 NVTFNVVV---PNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI----GMPAGK 91 (99)
Q Consensus 41 ~v~i~V~~---P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~----GIP~~k 91 (99)
+++|+|.+ |...+ .-..+.+.+.|-..|||+.+|+||-+.. |.|.+.
T Consensus 19 tLtL~vv~~~~~~~~~----~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~ 72 (126)
T 3kuz_A 19 TVALNVVFEKIPENES----ADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGL 72 (126)
T ss_dssp EEEEEEEECCCTTSSC----SCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSS
T ss_pred EEEEEEEeeccCCCcC----cCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCC
Confidence 68999988 54321 1134678889999999999999998874 787764
No 117
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.46 E-value=0.71 Score=30.24 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=35.2
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.++|+|++|+ |+.+.-.+..++||..|.+-|... +.....-+|.
T Consensus 23 ~~~IqiRlpd----------G~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~ 66 (109)
T 2cr5_A 23 VVTVALRCPN----------GRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLS 66 (109)
T ss_dssp EEEEEEECTT----------SCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEE
T ss_pred cEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEE
Confidence 7999999995 888888999999999999999865 4444444443
No 118
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=89.33 E-value=0.6 Score=35.19 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=34.1
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV 98 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~ 98 (99)
-....+.+....|+.+++++|++.+||+++.|.|.|..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~ 358 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 358 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSS
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcC
Confidence 45777888899999999999999999999999999864
No 119
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=89.32 E-value=0.07 Score=41.57 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
-|+|+|+- +|+.+.+.+..+++++.|+....++.|++.+++|+.|+
T Consensus 30 ~i~lkv~~-----------~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~ 75 (389)
T 4da1_A 30 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 75 (389)
T ss_dssp ---------------------------------------------------------
T ss_pred cEEEEEec-----------CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 57777752 27789999999999999999999999999999999986
No 120
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=88.46 E-value=0.087 Score=42.13 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
|+.+.+.|..+++++.|++.++++.|++.+.+|+.|+
T Consensus 30 g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFd 66 (360)
T 3ix6_A 30 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 66 (360)
T ss_dssp -------------------------------------
T ss_pred CcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 7799999999999999999999999999999999986
No 121
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=88.40 E-value=0.54 Score=38.59 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=32.2
Q ss_pred cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
...++.|.-++|++.||++|.+.+|+|+++|||..-
T Consensus 36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 71 (530)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEE
Confidence 345789999999999999999999999999999753
No 122
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=87.51 E-value=3.6 Score=26.59 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=29.6
Q ss_pred ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
++|..+.+.++++-+...|.++|.+..++..++
T Consensus 13 ~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~ 45 (89)
T 1vd2_A 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQ 45 (89)
T ss_dssp SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSC
T ss_pred eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 457899999999999999999999999988665
No 123
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=86.40 E-value=1.6 Score=32.48 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=34.6
Q ss_pred CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
.+++++|.+++ | ++.++++.++|+.+|=+.|.++.||.-
T Consensus 21 ~~~~~~V~lld----------g-~~~~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 21 KTFTVRIVTMD----------A-EMEFNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp CEEEEEEECSS----------C-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred CeeEEEEEeCC----------c-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 38999999974 6 788999999999999999999999874
No 124
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=86.34 E-value=1.6 Score=32.02 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
+|+++|.+++ | ++.++++.++|+.+|=+.|.++.||.-
T Consensus 1 ~i~~~V~l~d----------~-~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 1 TISVRVTTMD----------A-ELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp CEEEEEEETT----------E-EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred CEEEEEEECC----------c-eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 5889999974 5 678999999999999999999999864
No 125
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=86.31 E-value=1.9 Score=28.64 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=38.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc-----eEEEe
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK-----QKLHL 96 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k-----QkL~~ 96 (99)
.|.|+|..-+...+ .-.+.+++|-|+.+-+..+|.+||.+++++..+. -||.|
T Consensus 5 sikVKv~y~~~~~~---~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkY 62 (98)
T 1q1o_A 5 SILFRISYNNNSNN---TSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 62 (98)
T ss_dssp CEEEEEEECSSCSS---CCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEE
T ss_pred cEEEEEEecCcccc---cccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEE
Confidence 67777777543211 1225589999999999999999999999876333 36665
No 126
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=85.96 E-value=0.72 Score=35.36 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=42.1
Q ss_pred HHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 30 EQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 30 E~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
++.-|...+. ++.++|.+|+ |+...+.++.++|+.+|=+.|.++.||.-
T Consensus 75 ~~~~l~~~~~-~~~~~V~l~d----------g~~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 75 NGDTMEYRKK-QRPLKIRMLD----------GTVKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp TTCEEEEEEC-EEEEEEECTT----------SCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred CCceeeccCc-eeEEEEECcC----------CCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 4455667777 8999999985 77999999999999999999999999863
No 127
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=85.87 E-value=2 Score=28.86 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh
Q psy10057 37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
.|. .|.|.+-+|| |=.+++++..+.|+++||+.+-++.
T Consensus 16 ~~~-~v~v~~LlPn----------Gi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 16 MPP-RILVECLLPN----------GMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp CCS-EEEEEEECTT----------SCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred CCC-cEEEEEEcCc----------EEEEEEEeeccccHHHHHHHHHHHH
Confidence 456 8999999996 7899999999999999999887764
No 128
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=85.37 E-value=0.6 Score=39.55 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=34.2
Q ss_pred CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057 61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV 98 (99)
Q Consensus 61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~ 98 (99)
++..++.+....|+.+|+.+|++.+||+.+.|.|++..
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~ 358 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQAS 358 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhcc
Confidence 56667889999999999999999999999999998764
No 129
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=84.29 E-value=1.9 Score=32.26 Aligned_cols=39 Identities=5% Similarity=0.078 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
.+.++|.+++ |+..+++|+.++|+.+|=+.|.++.||.-
T Consensus 17 ~~~~~V~lld----------gt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 17 QGHCKVSLLD----------DTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp CCEEEEECTT----------SCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred eEEEEEEccC----------CCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 6889999875 77999999999999999999999999863
No 130
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=82.90 E-value=3.6 Score=33.19 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=40.9
Q ss_pred HHHHHhh-CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 30 EQVFLSK-MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 30 E~~fl~~-~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
-.|+.+. +.. ++.++|.+++ |...++.++.++|+++|=+.|.++.||..
T Consensus 205 ~~Ei~a~~~~~-~~~~~V~l~d----------g~~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 205 RDEIEALIHRQ-EMTSTVYCHG----------GGSCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp HHHHHHHHTTC-CEEEEEEETT----------SCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhCC-CcceEEEecC----------CCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 3555553 444 7999999984 77899999999999999999999999975
No 131
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=82.67 E-value=2.2 Score=36.43 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=34.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK 91 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k 91 (99)
+++|+|..|.. .+++.+.+.|--.|||+.+|+||-+.. |.|.++
T Consensus 233 ~ltL~v~~~~~-------~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~ 278 (627)
T 3ig3_A 233 TLTLHCVCPES-------EGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQ 278 (627)
T ss_dssp EEEEEEECTTT-------C--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGG
T ss_pred eEEEEEeccCC-------CCCCceeeEeeccCcHHHHHHHHHHHHHcCCCccc
Confidence 68888876642 136789999999999999999999986 777654
No 132
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=82.28 E-value=4.7 Score=26.57 Aligned_cols=46 Identities=9% Similarity=0.245 Sum_probs=41.3
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.|+|+|+. +|..+.+.+-.++..+.|.+-..++.|+.++.-|+.|+
T Consensus 21 ~IniKV~~-----------~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfD 66 (95)
T 2l76_A 21 LFPLKIRC-----------RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFG 66 (95)
T ss_dssp CEEEEEEC-----------SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEET
T ss_pred eEEEEEEc-----------CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEEC
Confidence 58888882 27899999999999999999999999999999999985
No 133
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.11 E-value=3 Score=27.25 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=39.9
Q ss_pred eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~ 97 (99)
.+|.|-.|+ |+..++.|.++.++.+|=+.-.+++|+.+++=.|.|+
T Consensus 10 m~v~Vl~~n----------~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~ 55 (90)
T 2al3_A 10 SAVSVLAPN----------GRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ 55 (90)
T ss_dssp CCEEEECTT----------SCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET
T ss_pred cEEEEEcCC----------CcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC
Confidence 467888775 8899999999999999989999999999988877764
No 134
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=80.35 E-value=3.7 Score=26.62 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=38.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC-ceEEEee
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG-KQKLHLD 97 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~-kQkL~~~ 97 (99)
-||+-.+--..+ -+.+.|.++.+|+.|=.....+.||+++ .-+|.|+
T Consensus 9 ~~~~~~~~~~~~----------dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 9 LITLLLRSSKSE----------DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp EEEEEEEESSSC----------CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET
T ss_pred HHHHhhhccCCC----------CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc
Confidence 466666654322 5788999999999999999999999999 9999986
No 135
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=78.44 E-value=2.8 Score=35.92 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=39.0
Q ss_pred CCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057 24 EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK 91 (99)
Q Consensus 24 e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k 91 (99)
|+-|+-|+ --..+++|+|..+...+ ....+.+.+.|--.|||+.+|+||-+.. |.|.++
T Consensus 245 E~~LLre~-----ie~~~ltL~v~~~~~~~----~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~ 305 (644)
T 3hm6_X 245 DNRLLRED-----VEYRPLTLNALLAVGPG----AGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQ 305 (644)
T ss_dssp SSSBCCSC-----CCCCEEEEEEECC-----------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHhhhhh-----ccceeEEEEEeecCccc----cCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCccc
Confidence 55666553 11226888887653211 1234678889999999999999999886 777765
No 136
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=76.96 E-value=5.6 Score=25.83 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=26.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMP 88 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP 88 (99)
++-.+.|-|+.+-+...||+||.++..+.
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35599999999999999999999999883
No 137
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=75.16 E-value=5.9 Score=33.30 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=41.3
Q ss_pred CcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 28 IPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 28 ~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
-.-.|+.+.-.+.++.++|.+++ |...+++|+.++|+.+|=+.|.++.|+.-
T Consensus 250 Ps~~Ei~Ai~~~~~i~~~V~llD----------gt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 250 PSWLELQATKSKKPIMLPVTFMD----------GTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp CCHHHHHHHHHTCCEEEEEEETT----------SCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred CCHHHHHHHHcCCceEEEEEecC----------CceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 33556665322337999999985 77999999999999999999999999753
No 138
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=74.68 E-value=9.4 Score=27.48 Aligned_cols=33 Identities=9% Similarity=0.376 Sum_probs=28.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCC-ceEEE
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAG-KQKLH 95 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~-kQkL~ 95 (99)
.+++.+.-++||.+|+.++...++|+.+ +-||.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW 174 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW 174 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEE
Confidence 4667788999999999999999999997 67774
No 139
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=72.28 E-value=3.9 Score=25.72 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=28.3
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCC-----CCceEEEe
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMP-----AGKQKLHL 96 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP-----~~kQkL~~ 96 (99)
+++|-|+++-+..+|.+||.+++++. .+.-||.|
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkY 41 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 41 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEE
Confidence 68889999999999999999999975 35556655
No 140
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.96 E-value=7.6 Score=32.12 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=33.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
+|.++|.+++ | ++.|.|+.++|+..|=+.|...+||.-
T Consensus 4 ~i~v~V~llD----------g-t~e~~vd~~tt~~ell~~V~~~LgL~e 41 (575)
T 2i1j_A 4 SMNVRVTTMD----------A-ELEFAIQQTTTGKQLFDQVVKTIGLRE 41 (575)
T ss_dssp EEEEEEECSS----------C-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred eEEEEEEeCC----------C-eEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 7999999974 5 678999999999999999999999864
No 141
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=71.55 E-value=8.2 Score=28.13 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=28.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCC-ceEEEe
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAG-KQKLHL 96 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~-kQkL~~ 96 (99)
.+++.+.-++||.+|+.++...++|+.+ +-||..
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~ 187 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWN 187 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 3556678889999999999999999998 688853
No 142
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=62.82 E-value=8.1 Score=28.92 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=28.8
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecC--CccHHHHHHHHHHHhCCCC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDL--RTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~--tdTV~~LK~kI~e~~GIP~ 89 (99)
.+.|.|.++| |+.+.++++. ++|+++|- +..||+.
T Consensus 5 ~~~i~V~l~d----------g~~~~~~i~~~~~tt~~el~----e~lgL~~ 41 (322)
T 4dxa_B 5 FEKVRIYRMD----------GSYRSVELKHGNNTTVQQIM----EGMRLSQ 41 (322)
T ss_dssp CCEEEEECTT----------SCEEEEECTTGGGCCHHHHH----TTSSCCT
T ss_pred ceEEEEEEEC----------CcEEEEEEcCCCCCcHHHHH----HHhCcCc
Confidence 6899999974 8899999998 99999993 4577754
No 143
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=62.79 E-value=12 Score=33.80 Aligned_cols=37 Identities=11% Similarity=0.362 Sum_probs=33.1
Q ss_pred CCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh
Q psy10057 38 ATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 38 pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
++ .|.|..-+|| |-.++|+|..+.||++||+.|-++.
T Consensus 49 ~~-~v~vd~LLPn----------Gi~i~~~v~~~~Tl~~iK~~lw~~A 85 (1092)
T 2y3a_A 49 DG-AISVDFLLPT----------GIYIQLEVPREATISYIKQMLWKQV 85 (1092)
T ss_dssp CS-EEEEEEECTT----------CCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred CC-ceEEEEECCC----------ceEEEEEecCcccHHHHHHHHHHHH
Confidence 35 8999999996 8899999999999999999988773
No 144
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=57.19 E-value=4.4 Score=26.62 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHHhCCCC
Q psy10057 72 TSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 72 dTV~~LK~kI~e~~GIP~ 89 (99)
..+...|.+|+.++||-.
T Consensus 65 ~~a~~~k~~Le~~~G~~I 82 (91)
T 2qt7_A 65 QQAGLVKSELEAQTGLQI 82 (91)
T ss_dssp HHHHHTHHHHHHHHTSCE
T ss_pred HHHHHhHHHHHHhhCeEE
Confidence 456678999999999753
No 145
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=55.93 E-value=11 Score=24.69 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=27.1
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
+|...+|.|+.++|++.|=+.+.++.+...+
T Consensus 18 Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 18 DGACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp TSCEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 5899999999999999999999998875543
No 146
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=55.59 E-value=11 Score=30.79 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=29.6
Q ss_pred cccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG 90 (99)
Q Consensus 58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~ 90 (99)
+.-|.-..+.|....|++++|+||+.++|++..
T Consensus 447 ~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 447 GTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp CEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred cccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 467888999999999999999999999998854
No 147
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=53.35 E-value=50 Score=22.42 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHhhCCCCceEEEEE-eCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 32 VFLSKMATPNVTFNVV-VPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 32 ~fl~~~pg~~v~i~V~-~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.-.++||+ -|.|.|. .++...-| -|+ .-.+-|+.+.||+.+-.-|..+.++.+++--..
T Consensus 27 ~ir~kyP~-kIPVIvEk~~~s~~~P--~Ld--k~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl 86 (130)
T 2zjd_A 27 LIREQHPT-KIPVIIERYKGEKQLP--VLD--KTKFLVPDHVNMSELIKIIRRRLQLNANQAFFL 86 (130)
T ss_dssp HHHHHCTT-EEEEEEEECTTCCSSC--CCS--CCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEE
T ss_pred HHHHhCCC-ceEEEEEEcCCCCcCc--ccc--ccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEE
Confidence 45668999 8999995 43321001 122 234568889999999999999999999875433
No 148
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=48.19 E-value=27 Score=31.57 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHhhCCCCc-eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh
Q psy10057 32 VFLSKMATPN-VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 32 ~fl~~~pg~~-v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
-|-. ++.+. |.|..-+|| |-.+.++|..+.||+.||+.+-.+.
T Consensus 33 ~w~~-~~~~~~i~vd~LLPn----------Gi~i~l~v~~~~tl~~iK~~lw~~a 76 (1091)
T 3hhm_A 33 LWGI-HLMPPRILVECLLPN----------GMIVTLECLREATLITIKHELFKEA 76 (1091)
T ss_dssp -----------EEEEEECTT----------SCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred hhcC-CCCCCceEEEEEcCC----------CeEEEEEecCCCcHHHHHHHHHHHH
Confidence 4443 43325 899999995 7799999999999999999887765
No 149
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=45.80 E-value=27 Score=26.44 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=30.0
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG 86 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G 86 (99)
.++|+|.++ +.+-++.++++.||..+-.+|.++..
T Consensus 3 ~~~~~~~~~-----------~~~~~~~f~~~~~v~~~~~~i~e~~~ 37 (371)
T 3ivf_A 3 ALSLKISIG-----------NVVKTMQFEPSTMVYDACRMIRERIP 37 (371)
T ss_dssp CEEEEEEET-----------TEEEEEEECTTCBHHHHHHHHHTTCG
T ss_pred cEEEEEEec-----------ceeEEEEECCCCCHHHHHHHHHHhcc
Confidence 588999997 34788999999999999999988873
No 150
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=43.40 E-value=52 Score=23.29 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=28.0
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
+|.+.++.|+++.|+..|=+.+.++.++..+.
T Consensus 43 d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 43 DSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred CCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 37899999999999999999999999977654
No 151
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=38.54 E-value=22 Score=22.93 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=33.7
Q ss_pred eCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 48 VPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 48 ~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
-|-..+|+--.+.-+++++.|+..++=-.+|+-|+..+|+.+.+
T Consensus 8 ~P~iTEKa~~~~e~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~ 51 (92)
T 3tve_T 8 APVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVK 51 (92)
T ss_dssp EECCSHHHHTTTTTTEEEEEECTTCCHHHHHHHHHHHTTCCEEE
T ss_pred ccccCHHHHHHhhCCEEEEEECCCCCHHHHHHHHHHHhCCceee
Confidence 34444554444555799999999999999999999999977643
No 152
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.88 E-value=21 Score=20.28 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.1
Q ss_pred CccHHHHHHHHHHHh
Q psy10057 71 RTSVTALKSQIHDLI 85 (99)
Q Consensus 71 tdTV~~LK~kI~e~~ 85 (99)
+.||..||..|++.+
T Consensus 2 sntvkelknyiqele 16 (46)
T 3he4_B 2 SNTVKELKNYIQELE 16 (46)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 568999999999864
No 153
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=36.25 E-value=79 Score=20.60 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCCCCCCcccC-c-EEEEEecC---CccHHHHHHHHHHHh
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNG-Q-TLSLSLDL---RTSVTALKSQIHDLI 85 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~G-q-ti~l~v~~---tdTV~~LK~kI~e~~ 85 (99)
...|+|.+|..-. .+.| + .+.++++. ..||+.|-+.|.+++
T Consensus 11 ~M~v~V~~~~~Lr----~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~ 56 (114)
T 1wgk_A 11 PLCVKVEFGGGAE----LLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL 56 (114)
T ss_dssp CEEEEEEECTTTG----GGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT
T ss_pred CcEEEEEEchHHH----HHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 4889999996432 3555 3 66778773 259999988888776
No 154
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=34.12 E-value=1.1e+02 Score=24.13 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=40.9
Q ss_pred CCCCc--HHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecC----------------------CccHHHHHHH
Q psy10057 25 ESLIP--EQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDL----------------------RTSVTALKSQ 80 (99)
Q Consensus 25 ~~L~p--E~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~----------------------tdTV~~LK~k 80 (99)
+.++| |+.++-+..|-.++|.|..|..-+. -.+.|+++.++|.. -+|+..||+.
T Consensus 192 g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~--~~lag~~~~F~V~v~~v~~~~lpeldDEfak~~~~~~~tleelk~~ 269 (432)
T 1w26_A 192 GRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA--ENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAE 269 (432)
T ss_dssp CCSCTTHHHHSSSCCSSCEEEEEEECCTTCSC--TTTSSCEEEEEEECCEECCEECCCCSHHHHTTTTCSSCCHHHHHHH
T ss_pred CCcchHHHHHhCCCCCCCEEEEEECCchhhCC--CCCCCceEEEEEEEEEEeccCCCCcchHHHHHhCccCCCHHHHHHH
Confidence 46777 6777778888677788777754332 24778888776542 2678888888
Q ss_pred HHHHh
Q psy10057 81 IHDLI 85 (99)
Q Consensus 81 I~e~~ 85 (99)
|.+..
T Consensus 270 ir~~l 274 (432)
T 1w26_A 270 VRKNM 274 (432)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 155
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=32.87 E-value=90 Score=19.44 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=27.8
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
+|+++-|.++..-||..|.+-+.+.+++..
T Consensus 15 ~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~ 44 (81)
T 2bps_A 15 NGSVFDLRLSDYHPVKKVIDIAWQAQSVSM 44 (81)
T ss_dssp TCCEEEEEEETTSBTTHHHHHHHHHSCCCS
T ss_pred CCceEEEECCCchhHHHHHHHHHHHhCCCc
Confidence 588999999999999999999999999775
No 156
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=30.11 E-value=98 Score=18.98 Aligned_cols=55 Identities=13% Similarity=0.312 Sum_probs=32.5
Q ss_pred CCCcHH--HHHhhCCCCceE--EEEEeCCCCCCCCCcccCcEEEEEec-CC----------ccHHHHHHHHHHHhCCCC
Q psy10057 26 SLIPEQ--VFLSKMATPNVT--FNVVVPNMTDKPEWKLNGQTLSLSLD-LR----------TSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 26 ~L~pE~--~fl~~~pg~~v~--i~V~~P~~~~k~ewkL~Gqti~l~v~-~t----------dTV~~LK~kI~e~~GIP~ 89 (99)
+++|.+ +-|..||+ |. ..|.++.. + .|..+.+-|. .. +....|++.|.+.+|+++
T Consensus 13 nv~P~eIE~~l~~~p~--v~~~~~v~v~~~----~---~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 82 (109)
T 3gxs_A 13 NIFPIQIETILLQFKE--LGSDYLITLETA----E---SNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTP 82 (109)
T ss_dssp EECHHHHHHHHHTCTT--EEEEEEEEEEEE----T---TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred EECHHHHHHHHHhCCC--cCCcEEEEEEcC----C---CceEEEEEEEEcCccccchhHHHHHHHHHHHHHHHhhCCce
Confidence 456654 56777988 53 45556642 1 2444444333 22 234578888888889986
No 157
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=29.76 E-value=41 Score=21.93 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=26.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCCceE
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAGKQK 93 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQk 93 (99)
.+.-.++.+.++++||+.++.++|+.-+.-.
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~ 34 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHE 34 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCe
Confidence 5666888999999999999999998876543
No 158
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=29.07 E-value=85 Score=23.73 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=25.5
Q ss_pred cCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~ 89 (99)
+|.+++|.|+++.|+++|=+.+.++.+...
T Consensus 40 D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~ 69 (281)
T 4gmv_A 40 DDSSKTMMVDERQTVRQVLDNLMDKSHCGY 69 (281)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence 378999999999999999888888877543
No 159
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=28.73 E-value=22 Score=22.58 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=33.0
Q ss_pred eCCCCCCCCCccc-CcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 48 VPNMTDKPEWKLN-GQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 48 ~P~~~~k~ewkL~-Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
-|-..+|+--.+. .+++++.|+...+=-.+|+-|+..+|+.+.+
T Consensus 8 ~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~ 52 (85)
T 1vq8_S 8 HPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQ 52 (85)
T ss_dssp EECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEE
T ss_pred ccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceE
Confidence 3444444433444 4689999999999999999999999987654
No 160
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=28.39 E-value=66 Score=19.21 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=20.0
Q ss_pred cEEEEEecCCccHHHHHHHHHHHh
Q psy10057 62 QTLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 62 qti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
....++++...||+.|.+.+..+.
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~ 41 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAH 41 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHC
Confidence 567888877789999999998775
No 161
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=28.33 E-value=30 Score=22.25 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=32.4
Q ss_pred eCCCCCCCCCccc-CcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 48 VPNMTDKPEWKLN-GQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 48 ~P~~~~k~ewkL~-Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
-|-..+|+--.+. ..+++|.|+..++=-.+|+-|+..+|+.+.+
T Consensus 13 ~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~ 57 (93)
T 3r8s_T 13 APHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEV 57 (93)
T ss_dssp EECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCE
T ss_pred ccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEE
Confidence 3444444333333 2689999999999999999999999987754
No 162
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=27.54 E-value=1.1e+02 Score=18.81 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCCCCCCcccC-cEEEEEec--CCccHHHHHHHHHHHh
Q psy10057 42 VTFNVVVPNMTDKPEWKLNG-QTLSLSLD--LRTSVTALKSQIHDLI 85 (99)
Q Consensus 42 v~i~V~~P~~~~k~ewkL~G-qti~l~v~--~tdTV~~LK~kI~e~~ 85 (99)
.+|+|.+...-. -.++| +.++++++ ...||+.|.+.+.++.
T Consensus 2 M~i~V~~fa~lr---e~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 2 VNVKVEFLGGLD---AIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEEEETTGG---GGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEEEchHHH---HHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 357777775321 12323 45677776 5679999999998886
No 163
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.34 E-value=1e+02 Score=20.25 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=35.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057 41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95 (99)
Q Consensus 41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~ 95 (99)
.|...|-+|+ ..-+++-+..+.|+.+|+.-+.++.+..-+.+.|.
T Consensus 9 ~i~~~Vy~~D----------hsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv 53 (104)
T 1wgy_A 9 EIFCHVYITE----------HSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALV 53 (104)
T ss_dssp CCCEEEECSS----------SCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEEEecc----------CceEEEEEeccchHHHHHHHHHHHhcCCccceEEE
Confidence 3667787774 34788888999999999999999998766566664
No 164
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=27.13 E-value=75 Score=24.21 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=31.4
Q ss_pred EEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCC
Q psy10057 43 TFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGM 87 (99)
Q Consensus 43 ~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GI 87 (99)
.++|-+|+. ..+|...++.++.+.|+.+|=+.|.++.||
T Consensus 9 ~l~V~l~~g------~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL 47 (375)
T 2al6_A 9 VFHYFENSS------EPTTWASIIRHGDATDVRGIIQKIVDCHKV 47 (375)
T ss_dssp EECCCCCSS------CGGGCEEEEEECTTCBHHHHHHHHHHHTTC
T ss_pred eEEEEecCC------CCCCceEEEEeCCCCCHHHHHHHHHHHcCC
Confidence 455667642 134559999999999999999999999998
No 165
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=26.83 E-value=65 Score=19.86 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=29.5
Q ss_pred CCCCceEEEEEeCCCCCCCCCcccC-cEEEEEecCCccHHHHHHHHHHHh
Q psy10057 37 MATPNVTFNVVVPNMTDKPEWKLNG-QTLSLSLDLRTSVTALKSQIHDLI 85 (99)
Q Consensus 37 ~pg~~v~i~V~~P~~~~k~ewkL~G-qti~l~v~~tdTV~~LK~kI~e~~ 85 (99)
|-| .++|+|.+=..-. ...| ....++++...||+.|.+.+....
T Consensus 6 ~~~-~~~v~V~~FA~lr----e~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 6 HHG-SVKVKVKYFARFR----QLAGVDEEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp ----CEEEEEEECTHHH----HHHSSSEEEEEECTTCBHHHHHHHHHHHC
T ss_pred ccC-cEEEEEEEhHHHH----HHhCCCeEEEECCCCCCHHHHHHHHHhHC
Confidence 456 8899999874211 1233 467788877789999999988764
No 166
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=26.69 E-value=38 Score=24.66 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.5
Q ss_pred HHHHhhCCCCceEEEEEeC
Q psy10057 31 QVFLSKMATPNVTFNVVVP 49 (99)
Q Consensus 31 ~~fl~~~pg~~v~i~V~~P 49 (99)
.+||++|++ |+|+|-+-
T Consensus 105 a~FL~~~~~--v~L~If~a 121 (190)
T 3vow_A 105 AEFLARHSN--VNLTIFTA 121 (190)
T ss_dssp HHHHHHCTT--EEEEEEEE
T ss_pred HHHHHhCCC--eEEEEEEE
Confidence 389999999 99988765
No 167
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=25.80 E-value=81 Score=24.51 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=41.5
Q ss_pred CCCCc--HHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecC----------------------CccHHHHHHH
Q psy10057 25 ESLIP--EQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDL----------------------RTSVTALKSQ 80 (99)
Q Consensus 25 ~~L~p--E~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~----------------------tdTV~~LK~k 80 (99)
+.++| |+.++-+..|-.++|.|..|.+-. .-.+.|+++.++|.. -+|+..||+.
T Consensus 195 g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~--~~~laGk~~~F~V~v~~i~~~~lpeldDEfak~~~~~~~tleelk~~ 272 (392)
T 1t11_A 195 GRMIPGFEDGIVGKTKGMEFVIDVTFPEDYH--AENLKGKAAKFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAE 272 (392)
T ss_dssp CCBSTTSGGGTTTCCSSCCCCEEEECCTTCS--CTTTSSCEEEECCCEEEEEEEECCCCSTGGGGGGSTTTTHHHHHHHH
T ss_pred CCcchhHHHHhCCCCCCCEEEEEEeCccccc--cCCCCCCeEEEEEEEEEEEcCCCCCcCHHHHHHhCccCCCHHHHHHH
Confidence 45666 677788888878888888885322 224678888776531 2678889988
Q ss_pred HHHHh
Q psy10057 81 IHDLI 85 (99)
Q Consensus 81 I~e~~ 85 (99)
|.+..
T Consensus 273 ir~~l 277 (392)
T 1t11_A 273 VRKNM 277 (392)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 168
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=24.80 E-value=1.3e+02 Score=19.14 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEec-CCccHHHHHHHHHHHhCCCC
Q psy10057 63 TLSLSLD-LRTSVTALKSQIHDLIGMPA 89 (99)
Q Consensus 63 ti~l~v~-~tdTV~~LK~kI~e~~GIP~ 89 (99)
.-++.++ ..-+|.+||..|.++.++-.
T Consensus 19 ~~~v~fdG~~Isv~dLKr~I~~~~kl~~ 46 (86)
T 2c7h_A 19 YDTVTFDGLHISLCDLKKQIMGREKLKA 46 (86)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHTCCT
T ss_pred cceEEEcCCEEEHHHHHHHHHHHhCCCC
Confidence 3445555 56799999999999987743
No 169
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=23.33 E-value=21 Score=18.38 Aligned_cols=11 Identities=55% Similarity=0.679 Sum_probs=8.7
Q ss_pred CCCCCCCcccC
Q psy10057 12 LDEEPVGKKIR 22 (99)
Q Consensus 12 ~~~~P~~Kr~k 22 (99)
.+++|+.||.|
T Consensus 16 edeepprkrkr 26 (28)
T 3ukw_C 16 EDEEPPRKRKR 26 (28)
T ss_dssp GGGSCCSSCCC
T ss_pred cccCcchhhhc
Confidence 56789999876
No 170
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=22.80 E-value=53 Score=22.88 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.7
Q ss_pred CcccCcEEEEEecCCccHHH
Q psy10057 57 WKLNGQTLSLSLDLRTSVTA 76 (99)
Q Consensus 57 wkL~Gqti~l~v~~tdTV~~ 76 (99)
+.+||+.+++++++..|+.+
T Consensus 8 ~~vNG~~~~~~v~~~~tLLd 27 (163)
T 1ffv_A 8 VNVNGKAQEKAVEPRTLLIH 27 (163)
T ss_dssp EEETTEEEEEEECTTCBHHH
T ss_pred EEECCEEEEEecCCCCcHHH
Confidence 45789999999998888764
No 171
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=22.21 E-value=1.3e+02 Score=18.89 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=26.2
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057 65 SLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96 (99)
Q Consensus 65 ~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~ 96 (99)
.+-|+.+.||+.+..-|..+..+.+++--..|
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFly 54 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIY 54 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEE
Confidence 46788899999999999999999887654443
No 172
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=21.39 E-value=50 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.8
Q ss_pred HHHhhCCCCceEEEEEeC
Q psy10057 32 VFLSKMATPNVTFNVVVP 49 (99)
Q Consensus 32 ~fl~~~pg~~v~i~V~~P 49 (99)
+||+.||+ |+|+|-+-
T Consensus 120 ~FL~~~~~--v~L~If~a 135 (203)
T 3v4k_A 120 KFISKNKH--VSLCIKTA 135 (203)
T ss_pred HHHhhCCC--eEEEEEEE
Confidence 89999999 99988764
No 173
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=21.18 E-value=78 Score=17.37 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCCC
Q psy10057 75 TALKSQIHDLIGMPAG 90 (99)
Q Consensus 75 ~~LK~kI~e~~GIP~~ 90 (99)
+.|-..|++++|+++.
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4666788888999864
No 174
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.04 E-value=42 Score=21.34 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=33.5
Q ss_pred EeCCCCCCCCCccc-CcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 47 VVPNMTDKPEWKLN-GQTLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 47 ~~P~~~~k~ewkL~-Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
..|-..+|+-..+. .+++++.|+...+=-.+|+-|+..+|+.+.+
T Consensus 8 k~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~ 53 (86)
T 3j21_T 8 IRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEK 53 (86)
T ss_dssp EECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEE
T ss_pred hccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceE
Confidence 44555554433343 3689999999999999999999999987644
No 175
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=20.74 E-value=1.1e+02 Score=20.10 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHhCCCC
Q psy10057 73 SVTALKSQIHDLIGMPA 89 (99)
Q Consensus 73 TV~~LK~kI~e~~GIP~ 89 (99)
.+...|.+|++++||-.
T Consensus 73 ~a~~~K~~Le~~tG~~I 89 (99)
T 4hti_A 73 ATVDNKDKLEETSGLKI 89 (99)
T ss_dssp HHHHTHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHhhCeEE
Confidence 46679999999999743
No 176
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=20.65 E-value=27 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=25.7
Q ss_pred EEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057 63 TLSLSLDLRTSVTALKSQIHDLIGMPAGK 91 (99)
Q Consensus 63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~k 91 (99)
.+++.|++..|=-++|+-|+..+|+.+.+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~ 52 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIG 52 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceE
Confidence 48999999999999999999999987654
No 177
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=20.11 E-value=65 Score=22.48 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.7
Q ss_pred CcccCcEEEEEecCCccHHH
Q psy10057 57 WKLNGQTLSLSLDLRTSVTA 76 (99)
Q Consensus 57 wkL~Gqti~l~v~~tdTV~~ 76 (99)
+.+||+.+++++++..|+.+
T Consensus 8 ~~vNG~~~~~~v~~~~tLLd 27 (166)
T 1n62_A 8 LTINGHPVEALVEPRTLLIH 27 (166)
T ss_dssp EEETTEEEEEEECTTCBHHH
T ss_pred EEECCEEEEEecCCCCcHHH
Confidence 45789999999998888774
Done!